lowQualScore : 111 22222 111 33 222222222222222222222222222222222222 1111111111 1111111111111111 111111111 111111 2222222222 111 11 1111111 11
lowQualScore : 4 4 3 0 2 66 666 77777 77 555 3 1 333 33 1 1 7777 66 111 2 11 888 22 3333 1 333333333333333333333333333333333333 2 2 0000000000 66 555555 1 2222222222222222 5555 2 0 44 444444444 0 0 111111111 0 55 0 333 0 0 0 0 1 11 1 333333 11 44 1 1 2 1111111111 1 1 777 22 22 333 0 55 1 3 1 2 1 22 555555555 4444444 1 55 1 1 2 1 1 1 1 77 77 2 2 2 2 77
lowQualScore : . . . . . .. ... ..... .. ... . . ... .. . . .... .. ... . .. ... .. .... . .................................... . . .......... .. ...... . ................ .... . . .. ......... . . ......... . .. . ... . . . . . .. . ...... .. .. . . . .......... . . ... .. .. ... . .. . . . . . .. ......... ....... . .. . . . . . . . .. .. . . . . ..
lowQualScore : 0 0 6 7 6 11 777 22222 99 999 6 2 666 77 1 1 9999 44 999 2 55 111 00 1111 5 666666666666666666666666666666666666 4 6 1111111111 99 000000 8 6666666666666666 9999 6 9 77 333333333 9 9 222222222 9 99 9 555 9 9 9 9 2 88 3 444444 99 77 4 4 9 6666666666 4 4 555 11 22 000 8 00 7 4 1 2 1 66 444444444 4444444 1 00 1 1 1 1 1 9 9 11 33 2 2 2 2 44
consensus : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCG--GTTTTTATCATTACTT-TTTCTT--ATT-N-TTATT-AA-GGTC---TT-CCGT-T-T--CCAA--CGG---AA-GA--CCTTAT---T--G----T-TA---TT---TTA---A----G------T---T-----TTCT-C--T-A-----T-ATT------ATT-ATT--------A------G----GTC-T-T--CC---------GT-T-T--C-----NA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---TA-T--T--CTT-A-AG-TT----------T-T-TTTT-T--CTA--T---TATTAT-ATTA-TT-AA-GGTC-T-T--CC---------GTT-T--CN-A-A--CGG-A-A-GA-CCTT-ATT-G-TTT--TTN-TT-AGG-T-TTC-TTTTTCCCTATTA
Reference ( gi|8 ) : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACG--GTTTTTATTATTA-TT-ATTCTT--ATT-C-TTATT-AA-GGTC---T--CCGT-T-T--CCAA--CGG---AA-GA--CCTTAT---T--G----T-TA---TT---TTA---A----G------T---T-----TTCT-C--T-A-----T-ATT------ATT-ATT--------A------G----GTC-T-T--CC---------GT-T-T--C-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---TA-T--T--CTT-A-AG-TT----------T-T-TTAT-T--CTA--T---TATTAT-ATTA-TT-AA-GGTC-T-T--CC---------GTT-T--CC-A-A--CGG-A-A-GA-CCTT-ATT-G-TTT--TTG-TT-AGG-T-TTC-TTTTTCCTTATTA
gi|21 : GTCTCCC-AAA-CGAAGTTAGGGGACTTA-TTGTTTTTGTACG--GTTTTTAT
gi|22 : aaGTCTCCC-AAAACGAAGTTTGGAGACTTA-TTG--TTTGTACG--GTTCTTATT
gi|26 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA---ATTTTTGCTCG--GTTCT
gi|28 : aGTCTCCC-AAA-CGAAGTTTGGAGACTTATTTATTTTT
gi|29 : tGTCTTCC-AAA-TGAAGTGTGGAGACTTA-TTGTTTTTGtttca
gi|31 : aGTCTCCC-AAA-CGAAGTCTGGAGACTTA-TTTATTTTGTctcc
gi|23 : GTCTCCC-AAG-CGAAGTTT-GAGACTTA-TTGTTTTGCTCCG--GT
gi|33 : aGTCTCCCCAAA-CGAAGCTTGGAGACTTA-TTTTTacctt
gi|25 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACG--GTTCTTA
gi|32 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGAGTTTG
gi|2 : A-TTACTTTTGTCC-----TTCTATTATTA-TT------------------TT-AA-GGTC---TTTCCGT-T-T--CCAA--CGG---AA-GA--CCTT-T---T--G----T-TT---TTG--TTA---G----G------A---T-----TTCT-T--T-c
gi|3 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccttctcatgttattgttataaaagtcttccatttcacaccaaagcccgtatagtgagttctttaagTATTTTTGAAAGTTGCTTGTACCCTTC-TTCATTGTT--ATTGC-TTATA-AA-AGTC---TT-CCAT-T-T--CACA--CCA---AA-GC--CCATAG---T--GAGTCT-TA---AA---TTA---C----T------T---T-----TTCC-C--TTC-----T-ATT------AGT-ATT--------AA-----G----GTC-T-T--CC---------GT-T-T--C-----CA-AA-C-GG---AA-G-ACC-TT-AT-T--G-T---TT-T--TTGTTC-A-GG-TG----------T-C-TT-T-C--CTA--T---ttcctt
gi|5 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaaGTGCA--GTCTTAA--ATTACTT-TTTCTTCTATT-TATTATTTAA-GGTC---T--CCGT-T-T--TCAA--CGG---AA-GA--CCTTAT---T--G------TA---TTTC-TTA---A----G------T---T-----TT-T-A--T-C-----T-ATT------ATT-
gi|4 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtataGTGCA--GTCTTAA--ATTACTT-TTTCTTCTATT-TATTATTTAA-GGTC---T--CCGT-T-T--TCAA--CGG---AA-GA--CCTTAT---T--G------TA---TTTC-TTA---A----G------T---T-----TT-T-A--T-C-----T-ATT------ATT-
gi|10 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtataTTTTATC--TA-TA-CTTTTT--AT--A-TTATT-AAAGGTCATAT--CCGT-T-T--CACA--CGG---AA-GA--CCTTA
gi|3 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataaTTCT---ATT-A-GTATT-AA-GGTC---TT-CCGT-T-T--CCAAA-CGG---AA-GA--CCTTAT---T--G----T-T----TT---TT
gi|1 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtacccttcttcattgttattgcttataaaagtcttccatttcacaccaaagcccatagtgagtcttaaattactttttcccTTCTT--ATT-C---ATT-AA-GGTC---TT-CCGT-T-TT-CCAA--CGG---AA-GA--CC-TAT---T--G----TGTA---TTA--TTC---G----G------T---T-----TTAT-T--T-T-----T-CTTC-----ATT-ATT--------gttcaggtgtctttcctat
gi|6 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaaagcccttatcgcgagtcttaaattactttttctcttTT--ATT-G-TTATT-AA-AGTC---TT-CCAT-T-T--CACA--CCA---AA-GC--CCGTAT---A--G----T-GAG--TC---TTA---A----A------T---TACTTTTTCC-C--T-------T-ATT------ATTTATT--------A------G-----TC-T-T--CC---------GT-T-T--C-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---TT-T--T--GTT-A-GG-TT----------TCT-TTTT-C--CTA--T---TAttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|2 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgTT--ATT-G-TTATA-AA-AGTC---TT-CCAT-T-T--CACA--CCA---AA-GC--CCGTAT---A--G----T-GAGTTCT---TTA---A----GATTAC-T---T-----TTGT-CCTT-C-----T-ATT------ATT-ATTTTA-----A------G----GTC-T-TT-CC---------GT-T-T--C-----CA-A--C-GG---AA-G-ACC-TT--T-T--G-T---TT-T--T--GTT-A-GGATT----------T-C-TTTT-T--C
gi|5 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccttctcatgTT--ATT-G-TTAT--AA-CGTC---TTTCCAT-T-T--CCAC--CA----AA-GC--CCGTATAG-T--G----C-AG---TC---TTA---A----A------T---TACTTTTTCTTC--T-A-----T--TT------ATT-ATTTA------A------G----GTC-T----CC---------GT-T-T--T-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---AT-T--T--CTT-A-AG--T----------T-T-TTA--T--CTA--T---TATTctt
gi|4 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgTT--ATT-G-TTAT--AA-CGTC---TTTCCAT-T-T--CCAC--CA----AA-GC--CCGTATAG-T--G----C-AG---TC---TTA---A----A------T---TACTTTTTCTTC--T-A-----T--TT------ATT-ATTTA------A------G----GTC-T----CC---------GT-T-T--T-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---AT-T--T--CTT-A-AG--T----------T-T-TTA--T--CTA--T---TATT
gi|9 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgTT--ATT-G-TTATA-AA-CGTC---TTTCCAT-T-T--C-AA--CAGCCAAA-GC--CCTTAT---A--G----T-GA---GTGC-TTA---AATTAG------C---T-----TTTT-C--C-C-----T-TTT------ATT-ATT--------AATTAA-G----GTC-T-TTTCCA--------GT-T-T--C-----CA-A--C-GA---AA-G-ACC-TA-AT-T--G-T---TA-T--T--CTT-A-AG-TT----------T-T-T--C-T--CTA--
gi|13 : gccatttttaaaaatggacggccattttgaaattttttcaaaagttgcgtgtaggcccttctcatgT--ACT-A-TTATT-AA-GGTC---TT-CCGT-T-T--CCAA--CGG---AA-GA--CCTTA----T--G----T-TA---TTC--TTA---A----G------T---T-----TT-T-T--T-A-----T-gttctt
gi|11 : ttctgattgtctaa--ATT-C-ATAT--AA-GGTC---T--TCGT-T-T--GAAA--CGG---AA-GA---CTTAA---A--A----T-AA---------TA---A----A----------------TTCG-C--T-A-----CAATC------GCT-ATA--------A------G----GTC-T-T--CC---------GT-C-T--G-----AATA--C-GG---AA-G-ACC-TT-c
gi|16 : tatc-TTATT-AA-GGTT---T--CCGT-T-T--CCA----GG---AA-G---CCTTAT---T--G----T-TA---TTC--TTA---A----G------T---T-----TT-T-T--T-A-----T--CT------ATT-Attacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|7 : -TTATT-GA-AGTC---TT-CCGT-TAT--CCAA--CGG---TA-GAACCTTTATGTTT--G----T-TAGGTTT---CT----------------T---T-----TTCC-C--T-A-----T-CTT------ATT-ATT--------
gi|24 : -TTACTGAA-GGTC---TT-CCGT-C-T--TCAA--CGG---AA-GA--CCTCAT---T--A----T-Ttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|11 : taTATC-AA-GGTC---TT-CCGTAT-T--CAGA--CGG---AA-GA--CCTTAT---A--G----C-GA---TT---GTAGCGA----A------T---T-----T-----------------ATT------ATT--TT--------A------A----GTC-T-T--CC---------GT-T-T--C-----AA-A--C--G---AA-G-ACC-TT-AT-ttcg
gi|30 : TATT-AA-GGTCCT-T--CCGT-T-T--CCAA--CGG---AA-GA--CCTTAT---T--G----T-atgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|20 : ATT-AA-GGTC---TT-CCGT-T-T--CCAA--CGG---AA-GA--CCTTAT---T--G----T-TA---TT---CTT---C----G------G---T-----TTCT-
gi|15 : ATT-AA-GGTC---TT-CCGT-T-TT-CCAA--CGG---AA-GA--CCTTTT---T--G----T-TA---TTC--TTA---A----G------T---TTC---TTCT-C--T-A-----t
gi|14 : attaTT-AA-GGTC---TT-CCGT-T-TTTCCAA--CGG---AA-GA--CCTTAT---T--G----T-TA---TTC--TTA---A----G------T---T-----TTTT-C--T-A-----T--CT------ATT-
gi|12 : T-AA-GGTC---TT-CCGT-T-TTTCCAA--CGG---AA-GA--CCTTATA--T--G----T-GA---TTGTCTTA---T----GGTTTCTT---T-----TTCT-C--T-------T-ATT------ATT-A----------A------G----GTC-T-T--TCTTCTTTCTTGT-T-T--C-----CA-A--C-TG---GA-G-ACC-TTAAT-T--GTT---TA-T--TA-CTT-A-AG-TT----------T-T-TT
gi|12 : T-AA-GGTC---TT-CCGT-T-G--GAAAAACGG---AA-GA--CCTTAtcttaggt
gi|5 : T-AA-GGTC---TT-CCGT-T-G--AAAA--CGG---A--GA--CCTTAtatgtgattgtcttatggtttctttttctcttattattaaggtctttcttctttcttgtttccaactggagaccttaattgtttattacttaagtttttttcttaggt
gi|4 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtatagtgcagtcttaaattactttttcttctatttattattT-AA-GGTC---TT-CCGT-T-G--AAAA--CGG---A--GA--CCTTAttgtatttcttaagtttttatctattatt
gi|13 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtatagtgcagtcttaaattactttttcttctatttattattT-AA-GGTC---TT-CCGT-T-G--GAAA--CGG---AA-GA--CCTTAttgtatttcttaagtttttatctattatt
gi|3 : ttctgattgtctaatactattatT-AA-GGTC---TT-CCGT-T-T--GGAAA-CGG---AA-GA--CCTTAtgttattcttaagtttttttatc
gi|14 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtacccttcttcattgttattgcttataaaagtcttccatttcacaccaaagcccatagtgagtcttaaattactttttcccttctattagtatT-AA-GGTC---TT-CCGT-T-G--GAAAAACGG---AA-GA--CCTTAttgttttttgttcaggtgtctttcctat
gi|20 : tT-AA-GGTC---TT-CCGT-T-G--GAAA--CGG---AA-GA--CCTTAttgttattcttaagttttttctatctatt
gi|30 : atT-AA-GGTC---TT-CCGT-T-G--GAAA--CGG---AAGGA--CCTTAttgttattcttcggtttctt
gi|2 : tat-AA-GGTC---TT-CCGT-T-G--GAAA--CGG---AAAGA--CCTTAttgt
gi|15 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccttctcatgttattgttataaaagtcttccatttcacaccaaagcccgtatagtgagttctttaagattacttttgtccttctattattattt-AA-GGTC---TT-CCGT-T-G--GAAAA-CGG---AA-GA--CCTTAttgtttttgttaggatttctttttcctt
gi|19 : attaat-GGTC---TA-CCGT-T-CA-CCAA--CGG---AA-GA--CCTTAT---TAGA----T-TAC--TT---CTT---A----G------T---T-----TTCT-C--T-A-----T-tttgttattcttaagtttcttctcta
gi|18 : TT---T--CCGT-T-T--CCAA--CAG---AA-GA--CC---T---T--G----T-TA---TT---CTAT--T----G------TTTCT-----TTTT-C--T-C-----T-ATT------ATT-t
gi|17 : gt--CCAA--CGG---AA-GA--CCTTAT---T--G----T-TT---TT---GTA---A----G------G---T-----TTCT-T--T-
gi|1 : tttttcatctgc---AA-GC--CCTTAT---C--G----C-GAG--TC---TTA---A----A------T---TACTTTTTCT-C--T-T-----TTCTT------ATTCATT--------AA-----G----GTC-T-T--CC---------GT-T-TT-C-----CA-A--C-GG---AA-G-ACC--T-AT-T--G-TG--TA-T--T--ATT-C-GG-TT----------T-TATTTT-T--CT---T---CATTAT-TTTT-TT-ttttctatt
gi|10 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaAT---T--A----C-TA---TT---ATA---A-----------T---T-----TTAT-C--T-A-----T-ACTTTTTATATT-ATT--------AAA----G----GTCATAT--CC---------GT-T-T--C-----AC-A--C-GG---AA-G-ACC-TT-Atcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|10 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaa------T---T-----ATCT-C--T-AAATGTT-ATT------GTT-ATT--------AATAAAAG----TTCAT-T--CC---------AC-T-T--CAGTCTCA-A----------A-A-ACCATT-AT-A--G-TAAGTAAG--T--CTT-A-AA-TTACTATTATAAT-T-TTAT----CTA--TACTTTTTAT-ATTA-TT-AAAGGTCATAT--CC---------GTT-T--CA-C-A--CGG-A-A-GA-CCTT-A
gi|2 : tattgaatatattttatgatataagttgcgcgtactactcgacc-----TTCT-C----A-----T-GTT------ATT-GTT--------ATAAA--A----GTC-T-T--CC---------AT-T-T--C-----AC-A--C-CA---AA-G-CCC-GT-AT-A--G-T---GAGT--T--CTTTA-AGATTAC--------T-T-TTGT-C--CTT--C---TATTATTATT--TT-AA-GGTC-T-TT-CC---------GTT-T--CC-A-A--CGG-A-A-GA-CCTT--TT-G-TTT--TTG-TT-AGGAT-TTC-TTTTTCCT
gi|5 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagccc-----TTCT-C----A-----T-GTT------ATT-GTT--------A------TAAC-GTC-T-TT-CC---------AT-T-T--C-----CA-C--C-A----AA-G-CCC-GT-AT-A--G-TG--CA-G--T--CTT-A-AA-TTACT-------T-T-TTCT-T--CTA--T---T----T-ATTA-TTTAA-GGTC-T----CC---------GTT-T--TC-A-A--CGG-A-A-GA-CCTT-ATT-G-TAT--TTC-TT-AAG-T-T---TTTATC--TATTA
gi|4 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccc-----TTCT-C----A-----T-GTT------ATT-GTT--------A------TAAC-GTC-T-TT-CC---------AT-T-T--C-----CA-C--C-A----AA-G-CCC-GT-AT-A--G-TG--CA-G--T--CTT-A-AA-TTACT-------T-T-TTCT-T--CTA--T---T----T-ATTA-TTTAA-GGTC-T----CC---------GTT-T--TC-A-A--CGG-A-A-GA-CCTT-ATT-G-TAT--TTC-TT-AAG-T-T---TTTATC--TATTAtt
gi|13 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccc-----TTGT-C--T-AA----T-ACT------ATT-ATT--------AA-----G----GTC-T-T--CC---------GT-T-T--C-----CA-A--C-GG---AA-G-ACC-TT-A--T--G-T---TA-T--T--CTT-A-AG-TT----------T-T-TTtt
gi|9 : ttctga-----TTCT-C----A-----T-GTT------ATT-GTT--------A------TAAACGTC-T-TT-CC---------AT-T-T--C------A-A--C-AGCCAAA-G-CCC-TT-AT-A--G-T---GA-G--TG-CTT-A-AA-TTAGC-------T-T-TTTC-C--CTT--T---TATTAT--TAA-TT-AA-GGTC-T-TTTCCA--------GTT-T--CC-A-A--CGA-A-A-GA-CCTA-ATT-G-TTA--TTC-TT-AAG-T-TTT-TCTCTtatc
gi|3 : gccatttttaaaaatggacggccattttgaaattttttcaaaagttgcgtgtaggcccT-C--T-T-----C-ATT------GTT-ATTGCTTATAAA------A----GTC-T-T--CC---------AT-T-T--C-----AC-A--C-CA---AA-G-CCC-AT-AG-T--G------A-G--T--CTT-A-AA-TTAC--------T-T-TTTC-C--CTT--C---TATTAG---TA-TT-AA-GGTC-T-T--CC---------GTT-T--CCAA-A--CGG-A-A-GA-CCTT-ATT-GTTTT--TTG-TTCAGG-T-GTC-TTTagttctt
gi|6 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtaccct-----T-ATT------GTT-ATT--------A------AA---GTC-T-T--CC---------AT-T-T--C-----AC-A--C-CA---AA-G-CCC-GT-AT-A--G-T---GA-G--T--CTT-A-AA-TT----------A-C-TTTT-T--CCC--T---TATTAT--TTA-TT-A---GTC-T-T--CC---------GTT-T--CC-A-A--CGG-A-A-GA-CCTT-ATT-G-TTT--TTG-TT-AGG-T-TTC-TTTTTCC-TATTAcctat
gi|15 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgt-ATT------A---ATT--------AA-----G----GTC-T-T--CC---------GT-T-TT-C-----CA-A--C-GG---AA-G-ACC-TT-TT-T--G-T---TA-T--T--CTT-A-AG-TT----------T-C-TT-C-T--CTA--
gi|30 : T------ATT-A----------A------G----GTCCT-T--CC---------GT-T-T--C-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---
gi|24 : T------ATT-ACTGA------A------G----GTC-T-T--CC---------GT-C-T--T-----CA-A--C-GG---AA-G-ACC-TC-AT-T--A-T---T--T--T--C
gi|20 : ------ATT-A----------A------G----GTC-T-T--CC---------GT-T-T--C-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---TA-T--T--CTT-C-GG-TT----------T-C-TTg
gi|24 : ------ATA-ATG--------A------G----GTC-T-T--CC---------GT-T-G--A-----AG-A--C-GG---AA-G-ACC-TT-
gi|16 : tattactgTT-ATT--------A------A----GGT-T-T--CC---------GT-T-T--C-----CA------GG---AA-G--CC-TT-AT-T--G-T---TA-T--T--CTT-A-AG-TT----------T-T-TTTA-T--CTA--T---TAtttcg
gi|7 : TT-ATTG-------A------A----GTC-T-T--CC---------GT-TAT--C-----CA-A--C-GG---TA-GAACC-TT-TA-T--G-T------T--T--GTT-A-GG-TT----------T-C-TTTT-TCCCTATCT---TATTAT--TTA-TT-
gi|12 : T-ATA--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-AAAC-GG---AA-G-ACC-TT-Acaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|11 : T-ATA--------A------G----GTC-T-T--C----------GT-T-T--G-----AA-A--C-GG---AA-G-AC--TT-AA-A--A-T---AA-T---------A-AA-TT----------C-G-CTA-----CAA--T---CGCTAT-A--------A-GGTC-T-T--CC---------GTC-T--GA-ATA--CGG-A-A-GA-CCTT-tgtgattgtcttatggtttctttttctcttattattaaggtctttcttctttcttgtttccaactggagaccttaattgtttattacttaagtttttttcttaggt
gi|6 : tatc-ATA--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-A--C-GG---AA-G-ACtgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|5 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgttattgttattaaagtcttccatttcacaccaaagcccgtatagtgagtcttaaattactttttcccttattatttatta-ATA--------A------G----GTC-T-T--CC---------GT-T-G--A-----AA-A--C-GG----A-G-ACC-TT-Atgtttttgttaggtttctttttcctatta
gi|4 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtatagtgcagtcttaaattactttttcttctatttattatt-ATA--------A------G----GTC-T-T--CC---------GT-T-G--A-----AA-A--C-GG----A-G-ACC-TT-Atgtatttcttaagtttttatctattatt
gi|13 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtatagtgcagtcttaaattactttttcttctatttattatt-ATA--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-A--C-GG---AA-G-ACC-TT-Atgtatttcttaagtttttatctattatt
gi|3 : ttctgattgtctaatactattat-ATA--------A------G----GTC-T-T--CC---------GT-T-T--G-----GA-AA-C-GG---AA-G-ACC-TT-Agttattcttaagtttttttatc
gi|14 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtacccttcttcattgttattgcttataaaagtcttccatttcacaccaaagcccatagtgagtcttaaattactttttcccttctattagtat-ATA--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-AAAC-GG---AA-G-ACC-TT-Atgttttttgttcaggtgtctttcctat
gi|20 : t-ATA--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-A--C-GG---AA-G-ACC-TT-Atgttattcttaagttttttctatctatt
gi|9 : at-ATT--------A------G----GTC-T-T--TC---------GT-T-G--G-----AA-A--CTGGAA-AA-G-ACC-TT-Atgttattcttcggtttctt
gi|30 : gccatttttaaaaatggacggccattttgaaattttttcaaaagttgcgtgtaggcccttctcatgttattgttataaacgtctttccatttcaacagccaaagcccttatagtgagtgcttaaattagctttttcccttttattattaat-ATA--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-A--C-GG---AAGG-ACC-TT-Atgttattcttaagtttttctctagttctt
gi|1 : tatT--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-AA-C-GG---AA-G-ACC-TT-AA-T--G-tgt
gi|2 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaaagcccttatcgcgagtcttaaattactttttctcttttcttatt--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-A--C-GGA--AA-G-ACC-TT-Attgtgtattattcggttttatttttcttcattattttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|12 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccttctcatgttattgttataaaagtcttccatttcacaccaaagcccgtatagtgagttctttaagattacttttgtccttctattattattt--------A------G----GTC-T-T--CC---------GT-T-TTTC-----CA-A--C-GG---AA-G-ACC-TT-ATAT--G-T---GA-TTGT--CTT-ATGG-TT----------T-C-TTTT-T--CTC--T--------T-ATTA-TT-AA-GGTC-T-T--TCTTCTTTCTTGTT-T--CC-A-A--CTG-G-A-GA-CCTTAATT-G-TTTA-TTACTT-AAG-T-TTT-TTTCTtttgtttttgttaggatttctttttcctt
gi|14 : ta--------A------G----GTC-T-T--CC---------GT-T-TTTC-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---TA-T--T--CTT-A-AG-TT----------T-T-TTCTAT--CTA--T---Ttaggt
gi|11 : tta--------A------G----GTC-T-T--CC---------GTAT-T--C-----AG-A--C-GG---AA-G-ACC-TT-AT-A--G-C---GA-T--T--GT----AG-----------------CGAA-T--TTA--T---TATT--------TT-AA--GTC-T-T--CC---------GTT-T--CA-A-A--C-G-A-A-GA-CCTT-AT
gi|15 : tatca--------A------G----GTC-T-T--CC---------GT-T-G--G-----AA-AA-C-GG---AA-G-ACC-TT-Aatgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|19 : attaat------G----GTC-T-A--CC---------GT-T-CA-C-----CA-A--C-GG---AA-G-ACC-TT-AT-TAGA-T---TACT--T--CTT---AG-TT----------T-T----C-T--CTA--T---Tttttgttattcttaagtttcttctcta
gi|18 : ----GTT-T-T--CC---------GT-T-T--C-----CA-A--C-AG---AA-G-ACC-TT-GT-T--A-TTC-TA-T--T--GTT------TC----------T-T-TTTC-T--CTA--T---TATT
gi|17 : TT-T-T--TC---------AT-C-TGCC-----CA-A--C-GG---AA-G-ACC-TT-AT-T--G-T---TT-T--T--GTA-A-GG-TTTC--------T-T-TTTT-T--CTA--T---T
gi|1 : ---AA-G-CCC-TT-AT-C--G-C---GA-G--T--CTT-A-AA-TTAC--------T-T-TTTC-T--CTT--T---TCTTAT--TCA-TT-AA-GGTC-T-T--CC---------GTT-TT-CC-A-A--CGG-A-A-GA-CC-T-ATT-G-TGTA-TTA-TT-CGG-T-TTTATTTTTCTTCATTA
gi|13 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtcca-T--CTA--A---TACTAT---TA-TT-AA-GGTC-T-T--CC---------GTT-T--CC-A-A--CGG-A-A-GA-CCTT-A-T-G-TTA--TTC-TT-AAG-T-TTT-TTTATCttttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|24 : ttctgattgT-ATTA-CTGAA-GGTC-T-T--CC---------GTC-T--TC-A-A--CGG-A-A-GA-CCTC-ATT-A-TTT--TCG-
gi|15 : -ATTAATT-AA-GGTC-T-T--CC---------GTT-TT-CC-A-A--CGG-A-A-GA-CCTT-TTT-G-TTA--TTC-TT-AAG-T-TTC-TTCT
gi|16 : TTA-TT-AA-GGT--T-T--CC---------GTT-T--CC-A-----GG-A-A-G--CCTT-ATT-G-TTA--TTC-TT-AAG-T-TTT-TTTATC--TATTActa
gi|7 : TTA-TT-GA-AGTC-T-T--CC---------GTTAT--CC-A-A--CGG-T-A-GAACCTT---T-A-TGT--TTG-TT-AGG-T-TTC-TTTTTCCCTAT
gi|30 : TA-TT-AA-GGTCCT-T--CC---------GTT-T--CC-A-A--CGG-A-A-GA-CCTT-ATT-G-Tcttattatttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|24 : TA-AT-GA-GGTC-T-T--CC---------GTT-G--AA-G-A--CGG-A-A-GA-CCTT-
gi|19 : tattactgTA-AT-AA-GGTC-T-T--CC---------GTTGG--TG-A-A--CGG-T-A-GA-CCttttcg
gi|20 : A-TT-AA-GGTC-T-T--CC---------GTT-T--CC-A-A--CGG-A-A-GA-CCTT-ATT-G-TTA--TTC-TT-CGG-T-TTC-TTgattacttcttagttttctctatt
gi|14 : -TT-AA-GGTC-T-T--CC---------GTT-TTTCC-A-A--CGG-A-A-GA-CCTT-ATT-G-TTA--TTC-TT-AAG-T-TTT-TTCT
gi|6 : T-AA-GGTC-T-T--CC---------GTT-G--GA-A-A--CGG-A-A-GA-Catctatt
gi|12 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgttattgttattaaagtcttccatttcacaccaaagcccgtatagtgagtcttaaattactttttcccttattatttattaT-AA-GGTC-T-T--CC---------GTT-G--GA-A-AAACGG-A-A-GA-CCTT-Attgtttttgttaggtttctttttcctatta
gi|5 : T-AA-GGTC-T-T--CC---------GTT-G--AA-A-A--CGG---A-GA-CCTT-Atatgtgattgtcttatggtttctttttctcttattattaaggtctttcttctttcttgtttccaactggagaccttaattgtttattacttaagtttttttcttaggt
gi|4 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtatagtgcagtcttaaattactttttcttctatttattattT-AA-GGTC-T-T--CC---------GTT-G--AA-A-A--CGG---A-GA-CCTT-Attgtatttcttaagtttttatctattatt
gi|13 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgttattgttataacgtctttccatttccaccaaagcccgtatagtgcagtcttaaattactttttcttctatttattattT-AA-GGTC-T-T--CC---------GTT-G--GA-A-A--CGG-A-A-GA-CCTT-Attgtatttcttaagtttttatctattatt
gi|3 : ttctgattgtctaatactattatT-AA-GGTC-T-T--CC---------GTT-TG-GA-A-A--CGG-A-A-GA-CCTT-Atgttattcttaagtttttttatc
gi|14 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtacccttcttcattgttattgcttataaaagtcttccatttcacaccaaagcccatagtgagtcttaaattactttttcccttctattagtatT-AA-GGTC-T-T--CC---------GTT-G--GA-A-AAACGG-A-A-GA-CCTT-Attgttttttgttcaggtgtctttcctat
gi|20 : tT-AA-GGTC-T-T--CC---------GTT-G--GA-A-A--CGG-A-A-GA-CCTT-Attgttattcttaagttttttctatctatt
gi|30 : atT-AA-GGTC-T-T--CC---------GTT-G--GA-A-A--CGG-A-AGGA-CCTT-Attgttattcttcggtttctt
gi|10 : tatT-AA-GGTC-T-T--CC---------GTG-T--GA-A-A--CGG-ATATGA-CCTT-ttgt
gi|2 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataattttatctatactttttatattatta-AA-GGTC-T-T--CC---------GTT-G--GA-A-A--CGGAA-A-GA-CCTT-A
gi|15 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccttctcatgttattgttataaaagtcttccatttcacaccaaagcccgtatagtgagttctttaagattacttttgtccttctattattattt-AA-GGTC-T-T--CC---------GTT-G--GA-A-AA-CGG-A-A-GA-CCTT-Attgtttttgttaggatttctttttcctt
gi|1 : attaatA-GGTC-T-T--CC---------GTT-G--GA-A-AA-CGG-A-A-GA-CCTT-AAT-G-tttgttattcttaagtttcttctcta
gi|19 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaaagcccttatcgcgagtcttaaattactttttctcttttcttatt-GGTC-T-A--CC---------GTT-CA-CC-A-A--CGG-A-A-GA-CCTT-ATTAG-ATTACTTC-TT-AGT-T-TTC-TCTattgtgtattattcggttttatttttcttcattattttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|18 : GTT-T-T--CC---------GTT-T--CC-A-A--CAG-A-A-GA-CCTT-GTT-A--TT--CTA-TT---G-T-TTC-TTTTTCTCTATTAatt
gi|17 : TT-T-T--TC---------ATC-TGCCC-A-A--CGG-A-A-GA-CCTT-ATT-G-TTT--TTG-TA-AGG-T-TTC-TTTTTTTCTATTtt
gi|11 : --CGA-A-A-GA-CCTT-ATT---TAT--CTA-TT---G-TATTC-TTTTTCCT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|27 ): TTGTAAATTCGTCGAAAGTAGCTCGGATTCACTGAAATAAGATT
Alignments
lowQualScore : 1 111 11 444444444444444444444444444444444444444444 11111111 33333333333333333 111111111 1111 111111 1
lowQualScore : 3 3 3 0 1 88 5 4 2 1 5 6 000 3 3 11 44 44 555 333333333333333333333333333333333333333333 5 11111111 22222222222222222 2 33 222222222 33 5555 55 0 2 2 1 2 77777777 2 2 0000 33 6666 333333 777 2 4 4 4 3 3 3 3 3 88 1 3 1 4 777 1 4 4 1
lowQualScore : . . . . . .. . . . . . . ... . . .. .. .. ... .......................................... . ........ ................. . .. ......... .. .... .. . . . . . ........ . . .... .. .... ...... ... . . . . . . . . . .. . . . . ... . . . .
lowQualScore : 6 6 6 2 0 00 0 0 5 0 8 7 666 3 3 22 66 66 888 555555555555555555555555555555555555555555 7 77777777 55555555555555555 7 44 555555555 44 0000 00 7 7 7 1 9 77777777 9 9 0000 99 1111 444444 000 0 4 4 4 6 6 6 6 6 66 0 6 3 0 111 8 4 4 4
consensus : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCNNTACTTNTTNTTATTGTTATTAAGGTC-T-T-CCGT-T-T--C--CAACGGAAGA--CCTTA---T--T--GTNA---TT---TTA---A----G------TT-----TTCT-CTA-----TATTATTATT--------A------G-GTC-TT--CC---------GTTT--CCAA-CG-GAAGACC-TT-ATTG-T---TA-T-T-CTT-AAGTT----T--T----TTT----N-TCTAT---TATTATATT-ATT-AA-GGTC-T-T-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTT-TT--GTTAGG-TTTC-TTTTTCCCTATTA
Reference ( family-3682 ) : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTTTTATCATTACTTTTTCTTATTNTTATTAAGGTC-T-T-CCGT-T-T--C--CAACGGAAGA--CCTTA---T--T--GTTA---TT---TTA---A----G------TT-----TTCT-CTA-----TATTATTATT--------A------G-GTC-TT--CC---------GTTT--CNAA-CG-GAAGACC-TT-ATTG-T---TA-T-T-CTT-AAGTT----T--T----TTT----T-TCTAT---TATTATATT-ATT-AA-GGTC-T-T-CCG-TT-T--CNAACGGAAGA-CCTTATTGTTT-TT--NTTAGG-TTTC-TTTTTCCCTATTA
gi|1 : T--CC---------ATTT--TAAGTCC-AAAGCCC-TT-ATCG-C---GA-G-T-CTT-AAATT----A--C----TTT----T-TCTCT---TTTCTTATTCATT-AA-GGTC-T-T-CCGTTT-T--CCAACGGAAGA-CC-TATTGTGTATT--ATTCGG-TTTTATTTTTCTTCATTA
gi|10 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaagga------TT-----ATCT-CTAAATGTTATTGTTATT--------AATAAAAG-TTCATT--CC---------ACTT--CAGT-CTCAAAAACCATT-ATAG-TAAGTAAG-T-CTT-AAATTACTAT--TATAATTT----TATCTATACTTTTTATATT-ATT-AAAGGTCATAT-CCG-TT-T--CACACGGAAGA-CCTTAttttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|10 : tattgaatatattttatgatataagttgcgcgtactactcgaccTTTTATCTATACTTTTTAT-ATTATTA--AAGGTCATAT-CCGT-T-T--C--ACACGGAAGA--CCTTA---
gi|11 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataaTATCAAGGTC-T-T-CCGTAT-T--C--AGACGGAAGA--CCTTA---T--A--GCGA---TT---GTAGCGA----A------TT-----T-------------ATTATT-TT--------A------A-GTC-TT--CC---------GTTT--CAAA-C--GAAGACC-TT-AT
gi|11 : TTATTATT-TTAAG-TC-T-T-CCGT-T-T--C--AAAC-GAAGA--CCTTA---TA-T--G--A---AT---TTA---C----G------------------------------ATTATT--------A------A-GAC-----AC---------G----------CG-AAAGACC-TT-AT---T---TA-TCT-ATT-GTATT----C--T----TTT----T-CCTatgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|12 : tatcaaggtcttccgtattcagacggaagaccttatagcgattgtagcgaatTAAGGTC-T-T-CCGT-T-TTTC--CAACGGAAGA--CCTTA---TA-T--GTGA---TTGTCTTA---T----GGTTTCTTT-----TTCT-CT------TATTATTA----------A------G-GTC-TT--TCTTCTTTCTTGTTT--CCAA-CT-GGAGACC-TTAATTGTT---TA-T-TACTT-AAGTT----T--T----TTT----C-Tcta
gi|13 : -----TTGT-CTAA----TACTATTATT--------AA-----G-GTC-TT--CC---------GTTT--CCAA-CG-GAAGACC-TT-A-TG-T---TA-T-T-CTT-AAGTT----T--T----TTT----A-TCtaggt
gi|14 : ttctga--------A------G-GTC-TT--CC---------GTTTTTCCAA-CG-GAAGACC-TT-ATTG-T---TA-T-T-CTT-AAGTT----T--T----TTC----TATCTAT---T
gi|15 : ttaATTAAGGTC-T-T-CCGT-T-TT-C--CAACGGAAGA--CCTTT---T--T--GTTA---TTC--TTA---A----G------TTTC---TTCT-CTA-----
gi|16 : attaTTATT--------A------A-GGT-TT--CC---------GTTT--CCA---G-GAAG-CC-TT-ATTG-T---TA-T-T-CTT-AAGTT----T--T----TTT----A-TCTAT---TA
gi|17 : TT-T-T-TCA-TC-TGCCCAACGGAAGA-CCTTATTGTTT-TT--GTAAGG-TTTC-TTTTTTTCTATT
gi|18 : GTT-T-T-CCG-TT-T--CCAACAGAAGA-CCTTGTTA-TT-CT--ATT--G-TTTC-TTTTTCTCTATTA
gi|19 : GGTC-T-A-CCGT-T-CA-C--CAACGGAAGA--CCTTA---T--TAGATTAC--TT---CTT---A----G------TT-----TTCT-CTA-----Ttt
gi|2 : -----TTCT-C-A-----TGTTATTGTT--------ATAAA--A-GTC-TT--CC---------ATTT--CACA-CC-AAAGCCC-GT-ATAG-T---GAGT-T-CTTTAAGAT----TACT----TTTGTCCT-TCTAT---TATTAT--T--TT-AA-GGTC-T-TTCCG-TT-T--CCAACGGAAGA-CCTT-TTGTTT-TT--GTTAGGATTTC-TTTTTCCTTt
gi|20 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagccc-ATT-AA-GGTC-T-T-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTA-TT--CTTCGG-TTTC-TT
gi|21 : GTCTCCC-AAA-CGAAGTTAGGGGACTTA-TTGTTTTTGTACGGTTTTTAT
gi|22 : aaGTCTCCC-AAAACGAAGTTTGGAGACTTA-TTG--TTTGTACGGTTCTTAT
gi|23 : GTCTCCC-AAG-CGAAGTTT-GAGACTTA-TTGTTTTGCTCCGGTt
gi|24 : aTATT-ACTGAA-GGTC-T-T-CCG-TC-T--TCAACGGAAGA-CCTCATTATTT-Tacctt
gi|25 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTCTTAcg
gi|26 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA---ATTTTTGCTCGGTTCT
gi|28 : aGTCTCCC-AAA-CGAAGTTTGGAGACTTATTTATTTTTTTTC
gi|29 : tGTCTTCC-AAA-TGAAGTGTGGAGACTTA-TTGTTTTTGCTCa
gi|3 : aT-CTT-----CATTGTTATTGCTTATAAA------A-GTC-TT--CC---------ATTT--CACA-CC-AAAGCCC-AT-AGTG------A-G-T-CTT-AAATTAC--T--T----TTT----C-CCTTC---TATTAG--T-ATT-AA-GGTC-T-T-CCG-TT-TC-CAAACGGAAGA-CCTTATTGTTT-TTTGTTCAGG-TGTC-TTT---CCTATc
gi|30 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtaccctTATTAAGGTCCT-T-CCGT-T-T--C--CAACGGAAGA--CCTTA---T--T--GT
gi|31 : GTCTCCC-AAA-CGAAGTCTGGAGACTTA-TTTATTTTGT
gi|32 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGAGTTTG
gi|33 : GTCTCCCCAAA-CGAAGCTTGGAGACTTA-TTTTTc
gi|4 : TTATTGTTAT-AACGTC-T-TTCCAT-T-T--C--CACCA-AAGC--CCGTA---TAGT--GCAG---TC---TTA---A----A------TTACTTTTTCTTCTA-----T-TTATTATTTA------A------G-GTC-T---CC---------GTTT--TCAA-CG-GAAGACC-TT-ATTG-T---AT-T-T-CTT-AAG------T--T----TTT----A-TCTAT---TATT
gi|5 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatgTTATTGTTAT-AACGTC-T-TTCCAT-T-T--C--CACCA-AAGC--CCGTA---TAGT--GCAG---TC---TTA---A----A------TTACTTTTTCTTCTA-----T-TTATTATTTA------A------G-GTC-T---CC---------GTTT--TCAA-CG-GAAGACC-TT-ATTG-T---AT-T-T-CTT-AAG------T--T----TTT----A-TCTAT---TATT
gi|6 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcccttctcatg-----TATTGTTATT--------A------AAGTC-TT--CC---------ATTT--CACA-CC-AAAGCCC-GT-ATAG-T---GA-G-T-CTT-AAATT----A--C----TTT----T-TCCCT---TATTAT-TT-ATT-A---GTC-T-T-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTT-TT--GTTAGG-TTTC-TTTTT-CCTATTA
gi|7 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgtTT-ATT-GA-AGTC-T-T-CCG-TTAT--CCAACGGTAGAACCTT--TATGT-TT--GTTAGG-TTTC-TTTTTCCCTAT
gi|7 : TTATTGAAGTC-T-T-CCGT-TAT--C--CAACGGTAGAACCTTTATGTT--T--GTTAGGTTT---CT----------------TT-----TTCC-CTA-----TCTTATTATT--------T------A-TTC-AC--CC----------TTT--CT---CG-AAAGcttattatttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|8 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTTTTATTATTA-TTATTCTTATTCTTATTAAGGTC-T---CCGT-T-T--C--CAACGGAAGA--CCTTA---T--T--GTTA---TT---TTA---A----G------TT-----TTCT-CTA-----TATTATTATT--------A------G-GTC-TT--CC---------GTTT--CCAA-CG-GAAGACC-TT-ATTG-T---TA-T-T-CTT-AAGTT----T--T----TTA----T-TCTAT---TATTATATT-ATT-AA-GGTC-T-T-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTT-TT--GTTAGG-TTTC-TTTTTCCTTATTAccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|9 : TTATTGTTATAAACGTC-T-TTCCAT-T-T--CAACAGCCAAAGC--CCTTA---T--A--GTGA---GTGC-TTA---AATTAG------CT-----TTTT-CCC-----TTTTATTATT--------AATTAA-G-GTC-TTTTCCA--------GTTT--CCAA-CG-AAAGACC-TA-ATTG-T---TA-T-T-CTT-AAGTT----T--T----TCT----C-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TTGTAAATTCGTCGAAAGTAGCTCGGATTCACTGAAATAAGATT
Alignments
lowQualScore : 22 11111 11111 77777777777777777777777777777777777777777777777777777777 2222222222222222222 111111111 111 2
lowQualScore : 3 3 3 0 1 22 6 1 77 1 7 99999 44444 3 88 44444 22 3 00000000000000000000000000000000000000000000000000000000 6 888 3 888888 2 9999999999999999999 2 7777 222222222 55 33 0 0 2 0 2 2 222 5 2 2 222 33 2 1 6666 0 6 4 88 3 3 3 55 3 3 1 3 3 44 4 4 0
lowQualScore : . . . . . .. . . .. . . ..... ..... . .. ..... .. . ........................................................ . ... . ...... . ................... . .... ......... .. .. . . . . . . ... . . . ... .. . . .... . . . .. . . . .. . . . . . .. . . .
lowQualScore : 6 6 6 2 0 00 7 0 55 0 3 11111 33333 6 66 11111 88 3 66666666666666666666666666666666666666666666666666666666 2 555 7 222222 7 8888888888888888888 5 1111 555555555 99 44 9 9 4 5 7 5 777 3 7 5 000 77 7 0 5555 3 0 4 66 6 6 6 00 6 6 3 6 6 77 0 0 1
consensus : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAACGGAAGACC-TTAT--T--GCGA-----TT---TT-----A---A----G------TT------------TTCT-CTA-TATT------A-TTATT--------A-----G----GTC-T-T--CC---------GTTT--C--CAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT---T--TTT-TNTC----TATTATTAT-TTATT-AAGGTCTT--CC-G-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
Reference ( family-3682 ) : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCNNTACTTNT--TNTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAACGGAAGACC-TTAT--T--GTNA-----TT---TT-----A---A----G------TT------------TTCT-CTA-TATT------A-TTATT--------A-----G----GTC-T-T--CC---------GTTT--C--CAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT---T--TTT-TNTC----TATTATTATATTATT-AAGGTCTT--CC-G-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
gi|1 : AAGCCCTT-ATCG-CGA-G-T-CTT-AAATTAC-T--TTT-TCTC----TTTTCTTAT-TCATT-AAGGTCTT--CC-GTTT-T--CC-AACGGAAGA-CC-TATTG-TGTATTATT-CGG-TTTTATTTTTCTTCATTA
gi|10 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaCTTATCTCTA---AA--TGTTATTGTTATTAATAAAAGTTCAT-T-CCAC-TT--CAGTCTCAA----AAACCATTAT--A--GTAAGTAAGTC---TT-----A---A----A------TTACTATTATAATTTTAT-CTA-TACTTTTTATA-TTATT--------AAA---G----GTCATAT--CC---------GTTT--C--ACACGGAAGACCTT-Attttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|10 : tattgaatatattttatgatataagttgcgcgtactactcgacTTTTATCTATACTTTT--TAT-ATTATTA--AA-----GGTCATAT-CCGT-TT--C-----ACACGGAAGACC-TTA
gi|11 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataaTATCAA-----GGTC-T-T-CCGTATT--C-----AGACGGAAGACC-TTAT--A--GCGA-----TT---GT-----AGCGA----A------TT------------T---------ATT------A-TT-TT--------A-----A----GTC-T-T--CC---------GTTT--C--AAAC-GAAGACCTT-AT
gi|11 : TTATTATT-TTAA-----G-TC-T-T-CCGT-TT--C-----AAAC-GAAGACC-TTA---T--ATGA-----AT---TT-----A---C----G---------------------------------------A-TTATT--------A-----A----GAC------AC---------G-----------CGAAAGACCTT-AT---TTA-TCT-ATT-GTATT---C--TTT-TTCC----Tatgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|12 : tatcaaggtcttccgtattcagacggaagaccttatagcgattgtagcgaatTAA-----GGTC-T-T-CCGT-TTTTC-----CAACGGAAGACC-TTATA-T--GTGA-----TTGTCTT-----A---T----GGTTTCTTT------------TTCT-CT--TATT------A-TTA----------A-----G----GTC-T-T--TCTTCTTTCTTGTTT--C--CAACTGGAGACCTTAATTGTTTA-T-TACTT-AAGTT---T--TTT-TCTcta
gi|13 : ------------TTGT-CTAATACT------A-TTATT--------AA----G----GTC-T-T--CC---------GTTT--C--CAACGGAAGACCTT-A-TG-TTA-T-T-CTT-AAGTT---T--TTT-TATC----taggt
gi|14 : ttctga--------A-----G----GTC-T-T--CC---------GTTTTTC--CAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT---T--TTTCTATC----TATT
gi|15 : ttaATT------AATTA----------A-----G----GTC-T-T--CC---------GTTTT-C--CAACGGAAGACCTT-TTTG-TTA-T-T-CTT-AAG-T---T--TCT-TCTC----TA
gi|16 : -TTATT--------A-----A----GGT-T-T--CC---------GTTT--C--CA--GGAAG-CCTT-ATTG-TTA-T-T-CTT-AAGTT---T--TTT-TATC----TATTA
gi|17 : TTTT--TC-A-TC-TGCCC-AACGGAAGA-CCTTATTG-TTT-TTGTA-AGG-TTTC-TTTTTTTCTATT
gi|18 : GTTTT--CC-G-TT-T--CC-AACAGAAGA-CCTTGTTA--TT-CTATT---G-TTTC-TTTTTCTCTATTA
gi|19 : -----GGTC-T-A-CCGT-TCA-C-----CAACGGAAGACC-TTAT--TAGATTAC----TT---CT-----T---A----G------TT------------TTCT-CTA-Ttt
gi|2 : ------------TTCT-C-A-TGTT------A-TTGTT--------ATAAA-A----GTC-T-T--CC---------ATTT--C--ACACCAAAGCCCGT-ATAG-TGAGT-T-CTTTAAGAT---TACTTT-TGTCCTTCTATTATTAT--T-TT-AAGGTCTTT-CC-G-TT-T--CC-AACGGAAGA-CCTT-TTG-TTT-TTGTT-AGGATTTC-TTTTTCCTTt
gi|20 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccATT-AAGGTCTT--CC-G-TT-T--CC-AACGGAAGA-CCTTATTG-TTA-TTCTT-CGG-TTTC-TT
gi|21 : GTCTCCC-AAA-CGAAGTTAGGGGACTTA-TTGTTTTTGTACGGTTTTTAT
gi|22 : aaGTCTCCC-AAAACGAAGTTTGGAGACTTA-TTG--TTTGTACGGTTCTTAT
gi|23 : GTCTCCC-AAG-CGAAGTTT-GAGACTTA-TTGTTTTGCTCCGGTt
gi|24 : aTATTACTGAAGGTCTT--CC-G-TC-T--TC-AACGGAAGA-CCTCATTA-TTT-TCGacctt
gi|25 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTCTTA
gi|26 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA---ATTTTTGCTCGGTTCT
gi|28 : aGTCTCCC-AAA-CGAAGTTTGGAGACTTATTTATTTTTTTTC
gi|29 : tGTCTTCC-AAA-TGAAGTGTGGAGACTTA-TTGTTTTTGCTCa
gi|3 : aT-CTT-CATT------G-TTATTGCTTATAAA-----A----GTC-T-T--CC---------ATTT--C--ACACCAAAGCCCAT-AGTG---A-G-T-CTT-AAATTAC-T--TTT-TCCC----TTCTATTAG--TATT-AAGGTCTT--CC-G-TT-T--CCAAACGGAAGA-CCTTATTGTTTT-TTGTTCAGG-TGTC-TTT---CCTATc
gi|30 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtaccctTATTAA-----GGTCCT-T-CCGT-TT--C-----CAACGGAAGACC-TTAT--T--GT
gi|31 : GTCTCCC-AAA-CGAAGTCTGGAGACTTA-TTTATTTTGT
gi|32 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGAGTTTG
gi|33 : GTCTCCCCAAA-CGAAGCTTGGAGACTTA-TTTTTc
gi|4 : CTTCTCATGTTATTGTTAT-AA-----CGTC-T-TTCCAT-TT--C-----CACCA-AAGCCC-GTATAGT--GCAG-----TC---TT-----A---A----A------TTACTTT-------TTCTTCTA-T-TT------A-TTATTTA------A-----G----GTC-T----CC---------GTTT--T--CAACGGAAGACCTT-ATTG-TAT-T-T-CTT-AAG-----T--TTT-TATC----TATTATT
gi|5 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccCTTCTCATGTTATTGTTAT-AA-----CGTC-T-TTCCAT-TT--C-----CACCA-AAGCCC-GTATAGT--GCAG-----TC---TT-----A---A----A------TTACTTT-------TTCTTCTA-T-TT------A-TTATTTA------A-----G----GTC-T----CC---------GTTT--T--CAACGGAAGACCTT-ATTG-TAT-T-T-CTT-AAG-----T--TTT-TATC----TATTATT
gi|6 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcc-TATT------G-TTATT--------A-----AA---GTC-T-T--CC---------ATTT--C--ACACCAAAGCCCGT-ATAG-TGA-G-T-CTT-AAATT---A--CTT-TTTC----CCTTATTAT-TTATT-A--GTCTT--CC-G-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTT-CCTATTA
gi|7 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgtTTATT-GAAGTCTT--CC-G-TTAT--CC-AACGGTAGAACCTT--TA-TGT-TTGTT-AGG-TTTC-TTTTTCCCTAT
gi|8 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTTTTATTATTA-TTAT--TCTTATTCTTATTAA-----GGTC-T---CCGT-TT--C-----CAACGGAAGACC-TTAT--T--GTTA-----TT---TT-----A---A----G------TT------------TTCT-CTA-TATT------A-TTATT--------A-----G----GTC-T-T--CC---------GTTT--C--CAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT---T--TTT-ATTC----TATTATTATATTATT-AAGGTCTT--CC-G-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCTTATTActtattatttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|9 : AATGGACGGCC-ATTT--T--GAAA-----TT---TTTTCAAA---A----G------TTGCGTGTAGGCCCTTCT-C-A-TGTT------A-TTGTT--------A-----TAAACGTC-T-TT-CC---------ATTT--CAACAGCCAAAGCCCTT-ATAG-TGA-G-TGCTT-AAATTAGCT--TTT-TCCC----TTTTATTAT-TAATT-AAGGTCTTTTCCAG-TT-T--CC-AACGAAAGA-CCTAATTG-TTA-TTCTT-AAG------TTTTTCTCTA
gi|9 : gccatttttaaaCTTCTCATGTTATTGTTATAAA-----CGTC-T-TTCCAT-TT--CAA---CAGCCAAAGCCC-TTAT--A--GTGA-----GTGC-TT-----A---AATTAG------CT------------TTTT-CCC-TTTT------A-TTATT--------AATTAAG----GTC-T-TTTCCA--------GTTT--C--CAACGAAAGACCTA-ATTG-TTA-T-T-CTT-AAGTT---T--TTC-TCTgttctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TTGTAAATTCGTCGAAAGTAGCTCGGATTCACTGAAATAAGATT
Alignments
lowQualScore : 11111 111 222222222222222222222 11111 444444444444444444444444444444 22222222222222 111111111
lowQualScore : 3 3 3 0 1 1 0 9 00000 8 444 4 99 000000000000000000000 777 88888 2 666666666666666666666666666666 0 77777 3 888888 2 66666666666666 2 2 5555 333333333 66 0 2 2 1 2 2 2 2 3 77 33 2 1 7777 5 4 3 3 3 3 55 3 3 1 3 4 66 4 4 1
lowQualScore : . . . . . . . . ..... . ... . .. ..................... ... ..... . .............................. . ..... . ...... . .............. . . .... ......... .. . . . . . . . . . .. .. . . .... . . . . . . .. . . . . . .. . . .
lowQualScore : 6 6 6 2 0 0 1 1 00000 0 555 0 55 000000000000000000000 000 66666 7 444444444444444444444444444444 5 55555 5 888888 9 77777777777777 7 7 5555 333333333 33 1 5 9 6 9 9 9 9 4 99 99 9 0 1111 7 4 6 6 6 6 00 6 6 3 6 0 22 4 4 4
consensus : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGCGATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
Reference ( family-3682 ) : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGCGATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
gi|1 : AAGCCCTT-ATCG-CGA-G-T-CTT-AAATTACT--TTT-TCTC----TTTTCTTAT-TCATT-AAGGTC-TT-CCGTTT-T--CC-AACGGAAGA-CC-TATTG-TGTATTATT-CGG-TTTTATTTTTCTTCATTA
gi|10 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaCTTATCTCTAA-----ATGTTATTGTTATTAATAAAAGTTCAT-T-CCAC-TT--CAGTCTCAAAAACCATTATAGTAAGTAAGTCTTAAAT--TACTATT-----ATA---A-----------TT-----TTAT-CTA-TACTTTTTATA-TTATT--------AAA---G-GTCATAT--CC---------GTTT--CACACGGAAGACCTT-Attttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|10 : tattgaatatattttatgatataagttgcgcgtactactcgacTTTTATCTATACTTTTTATATTATTA-----AA-----GGTCATAT-CCGT-TT--C-----ACA----C------GGAAG---ACCTTA--
gi|11 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataaTATCAA-----GGTC-T-T-CCGTATT--C-----AGA----C------GGAAG---ACCTTA--T--AGCGATT-----GTAGCGA----A------TT--------------TATT------A-TT-TT--------A-----A-GTC-T-T--CC---------GTTT--CAAAC-GAAGACCTT-AT
gi|11 : TTATTATT-TTAA-----G-TC-T-T-CCGT-TT--C-----AAA----C-------GAAG---ACCTTA-----TATGAAT-----TTA---C----G--------------------------------A-TTATT--------A-----A-GAC------AC---------G---------CGAAAGACCTT-AT---TTA-TCT-ATT-GTATT--C--TTT-TTCC----Tatgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|12 : tatcaaggtcttccgtattcagacggaagaccttatagcgattgtagcgaatTAA-----GGTC-T-T-CCGT-TTTTC-----CAA----C------GGAAG---ACCTTA--TA-TGTGATTGTC--TTA---T----GGTTTCTTT-----TTCT-CT--TATT------A-TTA----------A-----G-GTC-T-T--TCTTCTTTCTTGTTT--CCAACTGGAGACCTTAATTGTTTA-T-TACTT-AAGTT--T--TTT-TCTcta
gi|13 : -----TTGT-CTAATACT------A-TTATT--------AA----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-A-TG-TTA-T-T-CTT-AAGTT--T--TTT-TATC----taggt
gi|14 : ttctga--------A-----G-GTC-T-T--CC---------GTTTTTCCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTTCTATC----TATT
gi|15 : ttaATT------AATTA----------A-----G-GTC-T-T--CC---------GTTTT-CCAACGGAAGACCTT-TTTG-TTA-T-T-CTT-AAG-T--T--TCT-TCTC----TA
gi|16 : -TTATT--------A-----A-GGT-T-T--CC---------GTTT--CCA--GGAAG-CCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TATC----TATTA
gi|17 : TT-TT-TCA-TC-TGCCC-AACGGAAGA-CCTTATTG-TTT-TTGTA-AGG-TTTC-TTTTTTTCTATT
gi|18 : GTT-TT-CCG-TT-T--CC-AACAGAAGA-CCTTGTTA--TT-CTATT---G-TTTC-TTTTTCTCTATTA
gi|19 : -----GGTC-T-A-CCGT-TCA-C-----CAA----C------GGAAG---ACCTTA--T--TA-GATTACTTCTT----A----G------TT-----TTCT-CTA-Ttt
gi|2 : -----TTCT-C-A-TGTT------A-TTGTT--------ATAAA-A-GTC-T-T--CC---------ATTT--CACACCAAAGCCCGT-ATAG-TGAGT-T-CTTTAAGAT--TACTTT-TGTCCTTCTATTATTAT-TT--T-AAGGTC-TTTCCG-TT-T--CC-AACGGAAGA-CCTT-TTG-TTT-TTGTT-AGGATTTC-TTTTTCCTTt
gi|20 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTA-TTCTT-CGG-TTTC-TT
gi|21 : GTCTCCC-AAA-CGAAGTTAGGGGACTTA-TTGTTTTTGTACGGTTTTTAT
gi|22 : aaGTCTCCC-AAAACGAAGTTTGGAGACTTA-TTG--TTTGTACGGTTCTTAT
gi|23 : GTCTCCC-AAG-CGAAGTTT-GAGACTTA-TTGTTTTGCTCCGGTt
gi|24 : a-TTACTGAAGGTC-TT-CCG-TC-T--TC-AACGGAAGA-CCTCATTA-TTT-TCGacctt
gi|25 : taTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTCTTA
gi|26 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA---ATTTTTGCTCGGTTCT
gi|28 : aGTCTCCC-AAA-CGAAGTTTGGAGACTTATTTATTTTTTTTC
gi|29 : tGTCTTCC-AAA-TGAAGTGTGGAGACTTA-TTGTTTTTGCTCa
gi|3 : aT-CTT-CATT------G-TTATTGCTTATAAA-----A-GTC-T-T--CC---------ATTT--CACACCAAAGCCCAT-AGTG---A-G-T-CTT-AAATTACT--TTT-TCCC----TTCTATTAG-T-ATT-AAGGTC-TT-CCG-TT-T--CCAAACGGAAGA-CCTTATTGTTTT-TTGTTCAGG-TGTC-TTT---CCTATc
gi|30 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtaccctTATT-AAGGTCCTT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-T
gi|31 : GTCTCCC-AAA-CGAAGTCTGGAGACTTA-TTTATTTTGT
gi|32 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGAGTTTG
gi|33 : GTCTCCCCAAA-CGAAGCTTGGAGACTTA-TTTTTc
gi|4 : CTTCTCATGTTATTGTTAT-AA-----CGTC-T-TTCCAT-TT--C-----CAC----C------A-AAG---CCCGTA--TAGTGCAGTC-----TTA---A----A------TTACTTTTTCTTCTA-T-TT------A-TTATTTA------A-----G-GTC-T----CC---------GTTT--TCAACGGAAGACCTT-ATTG-TAT-T-T-CTT-AAG----T--TTT-TATC----TATTATT
gi|5 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccCTTCTCATGTTATTGTTAT-AA-----CGTC-T-TTCCAT-TT--C-----CAC----C------A-AAG---CCCGTA--TAGTGCAGTC-----TTA---A----A------TTACTTTTTCTTCTA-T-TT------A-TTATTTA------A-----G-GTC-T----CC---------GTTT--TCAACGGAAGACCTT-ATTG-TAT-T-T-CTT-AAG----T--TTT-TATC----TATTATT
gi|6 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcc-TATT------G-TTATT--------A-----AAGTC-T-T--CC---------ATTT--CACACCAAAGCCCGT-ATAG-TGA-G-T-CTT-AAATT--A--CTT-TTTC----CCTTATTAT-TTATT-A--GTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTT-CCTATTA
gi|7 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgt-TTATT-GAAGTC-TT-CCG-TTAT--CC-AACGGTAGAACCTT--TA-TGT-TTGTT-AGG-TTTC-TTTTTCCCTAT
gi|8 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTTTTATTATTATTATTC---TTATTCTTATTAA-----GGTC-T---CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGTTATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-ATTC----TATTATTATATTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCTTATTActtattatttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|9 : CTTCTCATGTTATTGTTATAAA-----CGTC-T-TTCCAT-TT--CAA---CAG----C------CAAAG---CCCTTA--T--AGTGAGTGC---TTA---AATTAG------CT-----TTTT-CCC-TTTT------A-TTATT--------AATTAAG-GTC-T-TTTCCA--------GTTT--CCAACGAAAGACCTA-ATTG-TTA-T-T-CTT-AAGTT--T--TTC-TCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TTGTAAATTCGTCGAAAGTAGCTCGGATTCACTGAAATAAGATT
Alignments
lowQualScore : 11111 111 222222222222222222222 11111 444444444444444444444444444444 22222222222222 111111111
lowQualScore : 3 3 3 0 1 1 0 9 00000 8 444 4 99 000000000000000000000 777 88888 2 666666666666666666666666666666 0 77777 3 888888 2 66666666666666 2 2 5555 333333333 66 0 2 2 1 2 2 2 2 3 77 33 2 1 7777 5 4 3 3 3 3 55 3 3 1 3 4 66 4 4 1
lowQualScore : . . . . . . . . ..... . ... . .. ..................... ... ..... . .............................. . ..... . ...... . .............. . . .... ......... .. . . . . . . . . . .. .. . . .... . . . . . . .. . . . . . .. . . .
lowQualScore : 6 6 6 2 0 0 1 1 00000 0 555 0 55 000000000000000000000 000 66666 7 444444444444444444444444444444 5 55555 5 888888 9 77777777777777 7 7 5555 333333333 33 1 5 9 6 9 9 9 9 4 99 99 9 0 1111 7 4 6 6 6 6 00 6 6 3 6 0 22 4 4 4
consensus : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGCGATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
Reference ( family-3682 ) : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGCGATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
gi|1 : AAGCCCTT-ATCG-CGA-G-T-CTT-AAATTACT--TTT-TCTC----TTTTCTTAT-TCATT-AAGGTC-TT-CCGTTT-T--CC-AACGGAAGA-CC-TATTG-TGTATTATT-CGG-TTTTATTTTTCTTCATTA
gi|10 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaattttgaattctttgaaatatttgctataaaaggatccattttaagtccaCTTATCTCTAA-----ATGTTATTGTTATTAATAAAAGTTCAT-T-CCAC-TT--CAGTCTCAAAAACCATTATAGTAAGTAAGTCTTAAAT--TACTATT-----ATA---A-----------TT-----TTAT-CTA-TACTTTTTATA-TTATT--------AAA---G-GTCATAT--CC---------GTTT--CACACGGAAGACCTT-Attttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|10 : tattgaatatattttatgatataagttgcgcgtactactcgacTTTTATCTATACTTTTTATATTATTA-----AA-----GGTCATAT-CCGT-TT--C-----ACA----C------GGAAG---ACCTTA--
gi|11 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataaTATCAA-----GGTC-T-T-CCGTATT--C-----AGA----C------GGAAG---ACCTTA--T--AGCGATT-----GTAGCGA----A------TT--------------TATT------A-TT-TT--------A-----A-GTC-T-T--CC---------GTTT--CAAAC-GAAGACCTT-AT
gi|11 : TTATTATT-TTAA-----G-TC-T-T-CCGT-TT--C-----AAA----C-------GAAG---ACCTTA-----TATGAAT-----TTA---C----G--------------------------------A-TTATT--------A-----A-GAC------AC---------G---------CGAAAGACCTT-AT---TTA-TCT-ATT-GTATT--C--TTT-TTCC----Tatgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|12 : tatcaaggtcttccgtattcagacggaagaccttatagcgattgtagcgaatTAA-----GGTC-T-T-CCGT-TTTTC-----CAA----C------GGAAG---ACCTTA--TA-TGTGATTGTC--TTA---T----GGTTTCTTT-----TTCT-CT--TATT------A-TTA----------A-----G-GTC-T-T--TCTTCTTTCTTGTTT--CCAACTGGAGACCTTAATTGTTTA-T-TACTT-AAGTT--T--TTT-TCTcta
gi|13 : -----TTGT-CTAATACT------A-TTATT--------AA----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-A-TG-TTA-T-T-CTT-AAGTT--T--TTT-TATC----taggt
gi|14 : ttctga--------A-----G-GTC-T-T--CC---------GTTTTTCCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTTCTATC----TATT
gi|15 : ttaATT------AATTA----------A-----G-GTC-T-T--CC---------GTTTT-CCAACGGAAGACCTT-TTTG-TTA-T-T-CTT-AAG-T--T--TCT-TCTC----TA
gi|16 : -TTATT--------A-----A-GGT-T-T--CC---------GTTT--CCA--GGAAG-CCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TATC----TATTA
gi|17 : TT-TT-TCA-TC-TGCCC-AACGGAAGA-CCTTATTG-TTT-TTGTA-AGG-TTTC-TTTTTTTCTATT
gi|18 : GTT-TT-CCG-TT-T--CC-AACAGAAGA-CCTTGTTA--TT-CTATT---G-TTTC-TTTTTCTCTATTA
gi|19 : -----GGTC-T-A-CCGT-TCA-C-----CAA----C------GGAAG---ACCTTA--T--TA-GATTACTTCTT----A----G------TT-----TTCT-CTA-Ttt
gi|2 : -----TTCT-C-A-TGTT------A-TTGTT--------ATAAA-A-GTC-T-T--CC---------ATTT--CACACCAAAGCCCGT-ATAG-TGAGT-T-CTTTAAGAT--TACTTT-TGTCCTTCTATTATTAT-TT--T-AAGGTC-TTTCCG-TT-T--CC-AACGGAAGA-CCTT-TTG-TTT-TTGTT-AGGATTTC-TTTTTCCTTt
gi|20 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTA-TTCTT-CGG-TTTC-TT
gi|21 : GTCTCCC-AAA-CGAAGTTAGGGGACTTA-TTGTTTTTGTACGGTTTTTAT
gi|22 : aaGTCTCCC-AAAACGAAGTTTGGAGACTTA-TTG--TTTGTACGGTTCTTAT
gi|23 : GTCTCCC-AAG-CGAAGTTT-GAGACTTA-TTGTTTTGCTCCGGTt
gi|24 : a-TTACTGAAGGTC-TT-CCG-TC-T--TC-AACGGAAGA-CCTCATTA-TTT-TCGacctt
gi|25 : taTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTCTTA
gi|26 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA---ATTTTTGCTCGGTTCT
gi|28 : aGTCTCCC-AAA-CGAAGTTTGGAGACTTATTTATTTTTTTTC
gi|29 : tGTCTTCC-AAA-TGAAGTGTGGAGACTTA-TTGTTTTTGCTCa
gi|3 : aT-CTT-CATT------G-TTATTGCTTATAAA-----A-GTC-T-T--CC---------ATTT--CACACCAAAGCCCAT-AGTG---A-G-T-CTT-AAATTACT--TTT-TCCC----TTCTATTAG-T-ATT-AAGGTC-TT-CCG-TT-T--CCAAACGGAAGA-CCTTATTGTTTT-TTGTTCAGG-TGTC-TTT---CCTATc
gi|30 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtaccctTATT-AAGGTCCTT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-T
gi|31 : GTCTCCC-AAA-CGAAGTCTGGAGACTTA-TTTATTTTGT
gi|32 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGAGTTTG
gi|33 : GTCTCCCCAAA-CGAAGCTTGGAGACTTA-TTTTTc
gi|4 : CTTCTCATGTTATTGTTAT-AA-----CGTC-T-TTCCAT-TT--C-----CAC----C------A-AAG---CCCGTA--TAGTGCAGTC-----TTA---A----A------TTACTTTTTCTTCTA-T-TT------A-TTATTTA------A-----G-GTC-T----CC---------GTTT--TCAACGGAAGACCTT-ATTG-TAT-T-T-CTT-AAG----T--TTT-TATC----TATTATT
gi|5 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccCTTCTCATGTTATTGTTAT-AA-----CGTC-T-TTCCAT-TT--C-----CAC----C------A-AAG---CCCGTA--TAGTGCAGTC-----TTA---A----A------TTACTTTTTCTTCTA-T-TT------A-TTATTTA------A-----G-GTC-T----CC---------GTTT--TCAACGGAAGACCTT-ATTG-TAT-T-T-CTT-AAG----T--TTT-TATC----TATTATT
gi|6 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagcc-TATT------G-TTATT--------A-----AAGTC-T-T--CC---------ATTT--CACACCAAAGCCCGT-ATAG-TGA-G-T-CTT-AAATT--A--CTT-TTTC----CCTTATTAT-TTATT-A--GTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTT-CCTATTA
gi|7 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagccctctcatgt-TTATT-GAAGTC-TT-CCG-TTAT--CC-AACGGTAGAACCTT--TA-TGT-TTGTT-AGG-TTTC-TTTTTCCCTAT
gi|8 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTTTTATTATTATTATTC---TTATTCTTATTAA-----GGTC-T---CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGTTATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-ATTC----TATTATTATATTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCTTATTActtattatttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|9 : CTTCTCATGTTATTGTTATAAA-----CGTC-T-TTCCAT-TT--CAA---CAG----C------CAAAG---CCCTTA--T--AGTGAGTGC---TTA---AATTAG------CT-----TTTT-CCC-TTTT------A-TTATT--------AATTAAG-GTC-T-TTTCCA--------GTTT--CCAACGAAAGACCTA-ATTG-TTA-T-T-CTT-AAGTT--T--TTC-TCT
blockSeqs : C A T A A C . A AT A TT AACAGCCA . TAG C GTCTTATGGTTTCTTT CTAA A . A GCTTATAAA A . TTT TTCTTTCTT TT A T T G C A T T AC AC C T CTTC A G C T . A GC A A A T . CA A . T
blockSeqs : . . . C T T . . TT . A ACACGG . TAG T GCTTAAATTAGCT TCTA A . . AATTAA . . T A T . . T . . . . T . . . C . . . . . . . . . . G . . A . . C
blockSeqs : . . . A T . . TT . . AGACGG . TA T TTAAATTACTTT TCTA A . . ATAAA . . T . . . . T . . . . T . . . A . . . . . . . . . . A . . A . . C
blockSeqs : . . . T T . . TT . . CAACGG . T C TTAAATTACTTT CTA A . . TAA . . T . . . . T . . . . T . . . A . . . . . . . . . . A . . C . . C
blockSeqs : . . . T A . . T . . CAACGG . T C ACTTCTTAGTT CTT G . . TAA . . T . . . . T . . . . T . . . C . . . . . . . . . . A . . A . . C
blockSeqs : . . . T . . . T . . CAACGG . T T GTAGCGAATT CTA A . . AA . . T . . . . T . . . . A . . . A . . . . . . . . . . A . . A . . .
blockSeqs : . . . A . . . T . . AAACG . T T TTAAGTT CCC A . . A . . T . . . . G . . . . T . . . G . . . . . . . . . A . . A . . .
blockSeqs : . . . . . . A . . CACCA . . . TTACG CT A . . A . . T . . . . A . . . . T . . . C . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . CACCA . CA T . . A . . T . . . . A . . . . T . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . A . . T . . . . G . . . . T . . . A . . . . . . . . . .
blockSeqs : . . . . A . . T . . . . T . . . . . . . . T .
blockSeqs : . . . A . . . . . . . T . . . . . . . . T
blockSeqs : . A . . . . . . . . . . . . . . . . C
blockSeqs : A . . . . . .
blockSeqs : .
blockSeqCons : ***** CAACGG*************** *** TA*** TTAAATTCTTT******************* ****** A************* T*** **
originalCons : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--C-----CAA----C------GGAAG---ACCTTA--T--TGCGATT-----TTA---A----G------TT-----TTCT-CTA-TATT------A-TTATT--------A-----G-GTC-T-T--CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
finalCons : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCTCATGTTATTGTTATTAA-----GGTC-T-T-CCGT-TT--CCAACGG---------------AAG---ACCTTATA---TGCGATTTTAAATTCTTT-------------------TTCT-CTA-TATT------A-TTATTA-------------G-GTC-TT---CC---------GTTT--CCAACGGAAGACCTT-ATTG-TTA-T-T-CTT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CC-AACGGAAGA-CCTTATTG-TTT-TTGTT-AGG-TTTC-TTTTTCCCTATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TTGTAAATTCGTCGAAAGTAGCTCGGATTCACTGAAATAAGATT
Alignments
lowQualScore : 1 11111111111 333333333333333333333333333333333333333333333 111 1111 111111111
lowQualScore : 3 3 3 0 1 1 5 5 4 8 99999 7 3 0 3 55 77777777777 1 55 999999999999999999999999999999999999999999999 6 222 2 888888 5 33 66 5555 2 5555 111111111 77 4 2 33 2 5 2 2 2 2 6666666 2 1 6666 8 5 4 4 4 4 66 4 3 5 4 5 5
lowQualScore : . . . . . . . . . . ..... . . . . .. ........... . .. ............................................. . ... . ...... . .. .. .... . .... ......... .. . . .. . . . . . . ....... . . .... . . . . . . .. . . . . . .
lowQualScore : 6 6 6 2 0 0 0 0 4 2 11111 3 6 9 6 00 99999999999 9 66 000000000000000000000000000000000000000000000 2 222 9 222222 3 55 99 3333 4 3333 888888888 99 7 4 77 7 3 7 7 7 7 7777777 7 0 5555 0 7 4 4 4 4 11 4 6 0 9 7 7
consensus : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCT-CAT-GTTATTG-TTATTAA-----GGTC-T-T-CCGT-TT--C-----CAACGGAAGACC-TTATA-TGCGA-----TC---TTA---AATTA-CT-------TT------TTCT-CT-A-T-ATT------A-TTA-TT--A----GGTC-T-T--CC---------GTTT--CCAA-CGGAAGACCTT-ATT--G-TTA-T-T-C-TT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTT-TTGTTAGG-TTTC-TTTTTCCCTATTA
Reference ( family-3682 ) : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTNCGGTTCTTATCTNTACTTCT-CAT-GTTATTG-TTATTAA-----GGTC-T-T-CCGT-TT--C-----CAACGGAAGACC-TTATA-TGCGA-----TT---TTA---AATT--CT-------TT------TTCT-CT-A-T-ATT------A-TTA-TT--A----GGTC-T-T--CC---------GTTT--CCAA-CGGAAGACCTT-ATT--G-TTA-T-T-C-TT-AAGTT--T--TTT-TNTC----TATTATTAT-TTATT-AAGGTC-TT-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTT-TTGTTAGG-TTTC-TTTTTCCCTATTA
gi|1 : A-----TT---TTG---AATT--CT-------TTGAAATATTTG-CT-A-T-A--------A---A-----A----GGA----T--CC---------ATTT--TAAGTCCAAAGCCCTT-ATC--G-CGA-G-T-C-TT-AAATTACT--TTT-TCTC----TTTTCTTAT-TCATT-AAGGTC-TT-CCGTTT-T--CCAACGGAAGA-CC-TATTGTGTATTATTCGG-TTTTATTTTTCTTCATTA
gi|10 : cagtgattcatacctcccttctccctttattgactcctacaaaaatgattcgtaaacccaacttgaccccagagacccaaatgatgcagtatattttggcagtacctacatttctgtataggcggccatttaaaaaatgcgaccaaatttttttttttatgctagaaatgcaaatcggggtcaccaattacctaggaaaaaaatggttgaaatccgacaactccttcaattttacgttttgacgccattttgaattggccacaccattttttgaaagtgacggacaaaCTTATCTCTAA------AT-GTTATTG-TTATTAATAAAAGTTCAT-T-CCAC-TT--CAGTCTCAA----AAACCATTATA--GTAAGTAAGTC---TTA---AATTA-CTATTATAATT------TTAT-CT-A-T-ACTTTTTATA-TTA-TT--AAA--GGTCATAT--CC---------GTTT--CACA-CGGAAGACCTT-Attttttttcttaactcgatttctctcccaaacgcctggacggattttcaggaaatttttcaaggatgggtgtatattggtcctggaaagatgaaataatatttcgtgtgatggcgacacttccaggtctgagaatattgacgatttctgattttcagaagtctcatttttgtgatgaaatgatctccgtactactcaagatatcttctttccccaatttacacggaagatagacaaaggactgaagtttatacctattgatctcaaagtctctagcttaaaaagcgccgatgcgcggagggcttaaaaaatcgaatttgaaaagtgtccgatttttttttatgtttttctcgataactcttactcataaatatatttggataaaatgtaaattagggccagaaagggtcaaagtttttataacatatctttt
gi|10 : tattgaatatattttatgatataagttgcgcgtactactcgacTTTTATCTATACTTTT-TAT-ATTATTA------AA-----GGTCATAT-CCGT-TT--C-----ACACGGAAGACC-TTA
gi|11 : tattgaatatattttatgatataagttgcgcgtactactcgaccttatctctaaatgttattgttattaataaaagttcattccacttcagtctcaaaaaccattatagtaagtaagtcttaaattactattataaTATCAA-----GGTC-T-T-CCGTATT--C-----AGACGGAAGACC-TTATA--GCGA-----TT---GTAGCGAATT-----------------------------T-ATT------A-TT--TT--A----AGTC-T-T--CC---------GTTT--CAAA-C-GAAGACCTT-AT
gi|11 : TTATTA-TT-TTAA-----G-TC-T-T-CCGT-TT--C-----AAAC-GAAGACC-TTATA-TG-------------------AATT-----------------------------T-ACG------A-TTA-TT--A----AGAC------AC---------G----------CGAAAGACCTT-AT-----TTA-TCT-A-TT-GTATT--C--TTT-TTCC----Tatgaatttacgattattaagacacgcgaaagaccttatttatctattgtattctttttcctcta
gi|12 : tatcaaggtcttccgtattcagacggaagaccttatagcgattgtagcgaatTAA-----GGTC-T-T-CCGT-TTTTC-----CAACGGAAGACC-TTATA-TGTGA-----TTGTCTTATG-GTTT--CT-------TT------TTCT-CT---T-ATT------A-TTA-----A----GGTC-T-T--TCTTCTTTCTTGTTT--CCAA-CTGGAGACCTTAATT--GTTTA-T-TAC-TT-AAGTT--T--TTT-TCTcta
gi|13 : TT--CT-------GA------TTGT-CT-AAT-ACT------A-TTA-TT--AA---GGTC-T-T--CC---------GTTT--CCAA-CGGAAGACCTT-A-T--G-TTA-T-T-C-TT-AAGTT--T--TTT-TATC----taggt
gi|14 : --A----GGTC-T-T--CC---------GTTTTTCCAA-CGGAAGACCTT-ATT--G-TTA-T-T-C-TT-AAGTT--T--TTTCTATC----TATT
gi|15 : tta-ATT------AATTA-----A----GGTC-T-T--CC---------GTTTT-CCAA-CGGAAGACCTT-TTT--G-TTA-T-T-C-TT-AAG-T--T--TCT-TCTC----TA
gi|16 : -TTA-TT--A----AGGT-T-T--CC---------GTTT--CCA---GGAAG-CCTT-ATT--G-TTA-T-T-C-TT-AAGTT--T--TTT-TATC----TATTA
gi|17 : TT-TT-TCA-TC-TGCCCAACGGAAGA-CCTTATTGTTT-TTGTAAGG-TTTC-TTTTTTTCTATT
gi|18 : GTT-TT-CCG-TT-T--CCAACAGAAGA-CCTTGTTA-TT-CTATT--G-TTTC-TTTTTCTCTATTA
gi|19 : ----GGTC-T-A--CC---------GTTCA-CCAA-CGGAAGACCTT-ATTAGA-TTACT-T-C-TT-AG--------TTT-TCTC----TATTtt
gi|2 : ------TTCT-C--A-T-GTT------A-TTG-TT--ATAAAAGTC-T-T--CC---------ATTT--CACA-CCAAAGCCCGT-ATA--G-TGAGT-T-C-TTTAAGAT--TACTTT-TGTCCTTCTATTATTAT-TT--T-AAGGTC-TTTCCG-TT-T--CCAACGGAAGA-CCTT-TTGTTT-TTGTTAGGATTTC-TTTTTCCTT
gi|20 : acagtgattcatacctccccttctccctttctgacactacaaaattgaatcgtgacccaacttgcccccaaacctaaattgatgccaagatttggcagtaacccatatttctgtatatggcggcagtttgaaaattggcggtctcaaaatgttttcttgatgctagaatgaaactagtggtcatcaacattaccctcgaaataaaatttggattcgaaatccaacaagctttaaaattttacgtttttgggcaccgccattttgaatgtccgcccatttttaaaattacggccatttgaaaatttttaaagttgctggtaagcccATT-AAGGTC-TT-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTA-TTCTTCGG-TTTC-TT
gi|21 : GTCTCCC-AAA-CGAAGTTAGGGGACTTA-TTGTTTTTGTACGGTTTTTAT
gi|22 : aaGTCTCCC-AAAACGAAGTTTGGAGACTTA-TTG--TTTGTACGGTTCTTAT
gi|23 : GTCTCCC-AAG-CGAAGTTTG-AGACTTA-TTGTTTTGCTCCGGTt
gi|24 : a-TTACTGAAGGTC-TT-CCG-TC-T--TCAACGGAAGA-CCTCATTATTT-TCGacctt
gi|25 : taTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTCTTA
gi|26 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA---ATTTTTGCTCGGTTCT
gi|28 : aGTCTCCC-AAA-CGAAGTTTGGAGACTTATTTATTTTTTTTC
gi|29 : tGTCTTCC-AAA-TGAAGTGTGGAGACTTA-TTGTTTTTGCTCa
gi|3 : aCTTCTTCATTGTTATTGCTTATAAA-----AGTC-T-T-CCAT-TT--C-----ACACCAAAGCCC---ATA--GTGAG----TC---TTA---AATTA-CT-------TT------TTCC-CTTC-T-ATT------A-GTA-TT--AA---GGTC-T-T--CC---------GTTT--CCAAACGGAAGACCTT-ATT--G-TTT-T-T-TGTT-CAGGT--G--TCT-TTCC----TATc
gi|30 : acagtgattcatacctccctttcccctttctgactactacaaaatgaatcgtggacacctaacttgcccccaaacctaaaatatgccaagatttgcacgtaacatattttctgtattatgcggccattttgtggaaaatggcggctcaaaatgtttttcttgatgctagaaatgactcagggtcattcacattacacctcgaaataaaaatttggttgaaatccaacaagctttaaattttacgttgtttgaccgccatttgaattggccgccatttttaaaattgacggccattttgaaaatatttttgaaagttgcttgtaccTATT-AAGGTCCTT-CCG-TT-T--CCAACGGAAGA-CCTTATTGT
gi|31 : GTCTCCC-AAA-CGAAGTCTGGAGACTTA-TTTATTTTGT
gi|32 : TCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGAGTTTG
gi|33 : GTCTCCCCAAA-CGAAGCTTGGAGACTTA-TTTTTc
gi|4 : CTTCT-CAT-GTTATTG-TTAT-AA-----CGTC-T-TTCCAT-TT--C-----CACCA-AAGCCC-GTATAGTGCAG-----TC---TTA---AATTA-CT-------TT------TTCTTCT-A-T--TT------A-TTA-TTTAA----GGTC-T----CC---------GTTT--TCAA-CGGAAGACCTT-ATT--G-TAT-T-T-C-TT-AAG----T--TTT-TATC----TATTATT
gi|5 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccCTTCT-CAT-GTTATTG-TTAT-AA-----CGTC-T-TTCCAT-TT--C-----CACCA-AAGCCC-GTATAGTGCAG-----TC---TTA---AATTA-CT-------TT------TTCTTCT-A-T--TT------A-TTA-TTTAA----GGTC-T----CC---------GTTT--TCAA-CGGAAGACCTT-ATT--G-TAT-T-T-C-TT-AAG----T--TTT-TATC----TATTATT
gi|6 : cagtgattcatacccccttctcccttctgactactacataaatgaatcgtggaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttcttataggcggccatgttttgaaaatgcggctcaaaatgttttcttcgatgcttagaaatggaactcggggtcatcatcattaccctcgaaataaaatttggttgaaatccaacaagcttaaaatttttacgatttttgaccgccttttgattggtcgccaatttttaaaagcttgacggcattttgaaaatttgaaagttgtgtgtagccCCTCT-CAT-GTTATTG-TTATTAA-----AGTC-T-T-CCAT-TT--C-----ACACCAAAGCCC-GTATA--GTGAG----TC---TTA---AATTA-CT-------TT------TTCC-CT---T-ATT------ATTTA-TT--A-----GTC-T-T--CC---------GTTT--CCAA-CGGAAGACCTT-ATT--G-TTT-T-T-G-TT-AGGTT--TC-TTT-TTCC----TATTA
gi|7 : acagtgattcatacctccttctccctttctgactactacaaaatgaattgtgaaccctaacttgaccccaaacctaaatgatgccaagattttggcagtaacccatatttctgtatatggcggccattttggaaatgggggctcaaaatgttttcttgatgctagaaatgaactcagggtcaccacattaccctcgaaaaaaatttggttgaaatccaacagctttaaaattttacgtttttaccgccattttgaattggccgccattttaaaatgacggccattttgaaatttttgaaagtgcgtgtagc-TTATT-GAAGTC-TT-CCG-TTAT--CCAACGGTAGAACCTT--TATGT-TTGTTAGG-TTTC-TTTTTCCCTAT
gi|8 : GTCTCCC-AAA-CGAAGTTTGGAGACTTA-TTGTTTTTGTACGGTTTTTATTATTATTATT-C----TTATTC-TTATTAA-----GGTC-T---CCGT-TT--C-----CAACGGAAGACC-TTAT--TGTTA-----TT---TTA---AGTT-------------------TTCT-CT-A-T-ATT------A-TTA-TT--A----GGTC-T-T--CC---------GTTT--CCAA-CGGAAGACCTT-ATT--G-TTA-T-T-C-TT-AAGTT--T--TTT-ATTC----TATTATTATATTATT-AAGGTC-TT-CCG-TT-T--CCAACGGAAGA-CCTTATTGTTT-TTGTTAGG-TTTC-TTTTTCCTTATTActtattatttattcaccctttctcgaaagccgctcgatcattttcataaaaatttcacaagaaacttattattaaaaaatgtatgtattactttttgttttgatgactcacttccggttcgacaatacgcacgattttgattttataggttattttgtccagatcgtttttctccaagatggataaagatagaaatttgcaaaattaatttttcatagtatgatagataaagattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataa
gi|9 : CTTCT-CAT-GTTATTG-TTATAAA-----CGTC-T-TTCCAT-TT--CAA---CAGCCAAAGCCC-TTATA--GTGA-----GTGC-TTA---AATTAGCT-------TT------TTCC-CT-T-TTATT------A-TTAATT--AA---GGTC-T-TTTCCA--------GTTT--CCAA-CGAAAGACCTA-ATT--G-TTA-T-T-C-TT-AAGTT--T--TTC-TCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TTGTAAATTCGTCGAAAGTAGCTCGGATTCACTGAAATAAGATT