lowQualScore : 444444444 2222 111 1 22222222222222 111111111 333333333333333333333333 11111 1 1111111111 111111111 1111 11 2222 1111 11111111111111 111111111 11111 33333333 3 2222 333333333333333333333333333333333333333333333333 33 22 222 11 111
lowQualScore : 2 2 2 2 000000000 77 3333 33 2 2 2 2 1 2 2 5 777 2 6666 2 6666 2 2 3 6666 44 3 1 3 33 0 6 6 44 11111111111111 3 77777 3 3 3 555 3 6666 6 2 77 6 111111111 5 2 77777 33 33 888888888888888888888888 2 2 00000 33 2 33 33 0 0 8888 2 99 999 2 66 33 2 2 3 2 66 33 1111111111 33 33 5555 444 2 000000000 33 2 2 55 2222 2 777777 2 33 4 2 22 2 77 22 0 8888888 2 2 2 4 2 444 777 6 2 1111 1 0000 1 66666666666666 1 222 33333 1 1 4 1 111111111 2 11111 7 2 33 7 5 33 2 2 33 55 33333333 33 2 2 7 2 999 2 2 33 2 2 5 5 5555 2 8888888 5 5 33 66 99 66 000000000000000000000000000000000000000000000000 88 3 44 6 11 3 6 0 00 3 44 9 6 3 6 66 88 3 3 3 1 777 666 55 11 777
lowQualScore : . . . . ......... .. .... .. . . . . . . . . ... . .... . .... . . . .... .. . . . .. . . . .. .............. . ..... . . . ... . .... . . .. . ......... . . ..... .. .. ........................ . . ..... .. . .. .. . . .... . .. ... . .. .. . . . . .. .. .......... .. .. .... ... . ......... .. . . .. .... . ...... . .. . . .. . .. .. . ....... . . . . . ... ... . . .... . .... . .............. . ... ..... . . . . ......... . ..... . . .. . . .. . . .. .. ........ .. . . . . ... . . .. . . . . .... . ....... . . .. .. .. .. ................................................ .. . .. . .. . . . .. . .. . . . . .. .. . . . . ... ... .. .. ...
lowQualScore : 7 7 7 7 999999999 66 2222 77 7 7 9 9 2 9 9 7 888 9 1111 9 1111 9 9 1 5555 22 1 2 3 88 6 7 7 22 44444444444444 1 11111 1 1 1 444 1 5555 2 4 33 2 444444444 7 9 11111 99 99 111111111111111111111111 9 9 00000 99 9 99 99 9 7 9999 9 66 333 7 33 77 7 7 3 7 33 77 7777777777 77 77 7777 777 7 000000000 44 5 5 99 5555 4 444444 2 11 2 1 99 1 55 99 1 9999999 1 1 1 4 1 555 000 7 1 9999 2 0000 9 11111111111111 4 555 66666 4 4 1 4 000000000 4 88888 5 5 44 5 0 44 5 5 44 22 55555555 44 5 5 3 7 333 7 7 77 7 7 3 3 0000 7 7777777 3 3 55 33 00 33 444444444444444444444444444444444444444444444444 55 1 22 2 99 1 2 8 99 1 22 2 2 1 2 66 55 1 6 6 1 888 444 44 99 666
consensus : AAATTTT-TT-GAA-GCA-GACCTAAGCCCTGGGCTTTTTC--TA-T---TT-TTAATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-AA----A-C----CAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAAT-AAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------G--GA---GGGG-G-TGGGTG-G-A--GT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGTAAA---------A--T-TA-T--GGT---CAA-G--T---AT-A--A-CCCG-AA--TAATC-CAGT-C--GTTCTAG-------TC-C-G-CTC-ACT-A-A-C---GATCGCT-CAT-T-AAGTCATAGAGAAC-AC-GAG-A-CGAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--ATT-ATCA-T---T-ATC--A-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTAT-AGA-TATTTTT-AAAAGCCAA-AGAAAAAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGCT---AAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
Reference ( gi|5 ) : AAATTTT-TT-GAA-GCA-GACCTAAGCCCTGGGCTTTTTT--C--T---TT-CTAATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-AA----A-C----CAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAAT-A-GCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTTT-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------G--GAA--GGGG-G-TGGGTG-G-A--GT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGTAAA---------A--T-TA-T--GGT---TAA-G--T---AT-A--A-CCCG-AA--TAATC-CAGA-C--GTTCTAG-------TC-C-G-TTC-ACT-A-A-C---GATGGCT-CAT-T-AAGTCATAGAGAAC-AC-GAG-A-TAAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--ATT-ATC--T---T-ATC--A-T-TCTGACGCTTGACTTCTG-TCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTAT-AG--TATTTTT-AAAAGCCAA-AGAAAAAAACTTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGCT---AA--CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|3 : AAATTTT-T--GAA-GCA-GACCTAAGCCCTGGGCTTTTTT--C--T---TTTCTAATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-AA----AAC----CAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATTTGAAAT-A-GCATTCTCGC-AT--ATTCT---ACCC-------A-GGAAAATT---T-ATCAACCCAAAGAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTTT-CCCTTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------G--GAA--GGGGGG-TGGGTG-G-A--GT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGTAAA---------A--T-TA-T--GGT---TAA-G--G---AT-A--A-CCCGAAA--TAATC-CAGA-C--GTTCTAG-------TC-C-G-TTC-ACTAA-A-C---GATGGCT-CAT-T-AAGTCATA-AGAACAAC-GAG-A-TAAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAGGTT-----T-AGT-AA--GG-ACATTTTGC--TGA--CTTTGTAAA-CAACG-AAAA--ATT-ATC--T---T-ATC--A-T-TCTGACGCTTGACTTCTGTTCTGTTT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT--AAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTAT-AG--TATTTTT-AAAAGCCAA-AG-AAAAAACTTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGCT---AAG-CCCGTTCGGACT-TTTTTTTTC--TTGA
gi|2 : gttggAAATTTT-TT-GAA-GCA-GACCTAAGCCCTGGGCTTTTTC--TATT---TT-TTAATCCT--AAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-AA----A-T----CAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAA-GCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATCACCCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A-----------------AGG-G-TGGGTG-G-A--GTAAG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGTAAA---------A--T-TA-TA-GGT---CAA-G--T---AT-A--A-CCCG-AA--TAATC-CAGT-C--GTTCTAG-------TC-C-G-TTCAACT-A-A-C---GATATCT-CATAT-AAGTCATAGAGAAC-AC-GAG-A-TGAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GGAACATTTTGCTTTGA----TTGTAAA-CAACG-AAAA--ATTAATCA-T---T-ATC--A-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TCAAAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGA-CATATATATCTCTG--CT-AAAACTAAGCAGTTAAA--------------AAG--T-A--TTTAT-AGA-TATTTTT-AAAAGCCAA-AGAAAAAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGCT---AAG-CCCG-ACGGAC--TTTTTTCT---TTGAa
gi|11 : gttgaAAATTTT-TT-GA--GCA-GATCTAAGCCCTGGGCTTTTCTA-T--T---TT-TTAATCCT--AAGCCC-G-A-AAACTT-TTTT-GTAAAGTCCAAG-TTGTAAAAG-TATAA-ACA-AA----A-C----CAA-AATGC-TGTATAGGCCTATT--CCAGG----AGTAACCTCTCA--TCAA-CAGTATT-GCAATAC--TCATATT-GAAAT-AAGCATTCTCGCCAT--ATTCT----CCC-------A-AGGAA-TT---T-ATCAACCCAA-GAGGA-TAAA---G---TTCC-GTA----TC-CACTTTTC-CCCTTTCA---------TA-TT-TCAA------T--CTTTC--TTCA---A-A--------G--GGGTGGGGG-G-GGGGTG-GGA--GT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTTTCAG--ACTTGTTG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGTAAA---------A----TA-T--GGT---CAA-G--TA--AT-A--A-CCCG-AA--TAATC-CAGT-C--GTTCTAG-------TC-C-G-CTC-ACT-A-A-C---GATGGCT-CAT-----ATCATAGAGAAC-AC-GAG-A-TGAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAGTT---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--ATT-ATCA-T---TAATC--A-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GTAGCT-TCGAC-T-AGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-ATCTCTATAAA--TATTTTTAAAAAGCCAA-AGAAAAAA--TTGGAAGAGAAAATTCA-TTAAT-TAA-A-TTTTAA-TGGAAAATA-TT--T-ATTTCAGAAA-G-a
gi|1 : ttgaAAATTTTCTT-GAA-GCA-GACCTAAGCCCTGGGTCTTTTT--C--TATTTT-TTAATC---TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTTTACA-AA----T-C----AAA-AATGC-TGTATAGGCCTATTTTCCAGG----AGTAACCTCTCA--TCAAACAGTATTTGCAATACA-TCATATT-GAAAT-AAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATCA-CCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTTCGCC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------A--G-------G-G-TGGGTG-GGA--GT-AAGTT--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTC-G--TT--TTCAT----G---TAGATTGTAAA---------AATTATA-T--GGT---CAA-G--T---AT-A--A-CCCG-AA--TAATC-CAG--C--GTTCTAG-------TC-C-G-TTCAACT-A-A-C---GATATCT-CAA-T-AAGTCATAGAGAAC-AC-GAG-A-TGAT-CCA--TC-GAGG---GG-----CTTGAAA-TT-ATTCGAG-T---------TAGG-T-----TAAGT-AAAGGA-ACATTTTGC-TTGA--CTTTGTAAACCAACG-AAAA--ATTAATCA-T---T-ATC--A-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGACCATATATATCTCTG--CT-AA--------------AACTAAGCAGTTAAAAAG--T-A--TTTAT-AGA-TATTTT---AAAGCCAA-AAGAAAAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-ATTGGAAAATA-TT--T-ATTTCAGAAAGG-AGCT---AAG-CCCG--AGGACGGTTATTTTTCCTTTGA
gi|4 : gttgaAAAATTT-TT-GAA-GCA-GACCTAAGCCCAGGGCTTTTTC--T--A---TT-TTAATCCT---AACCC-G-A-AAACTT-TTTTTGCCAGTTCCAAG-TTGTAAA-G-TATTT-ATA-AA----A-T----CAATAATGC-TGT-TAGGCCTATTT-CCCAG----AGTAACCCC--A--TCAA-CAGTATT-GCAATACA-TCATATT-GAAAT-AAGCATCCTCGCCAT--ATTCT---TACC-------A-AGGAAATT---TTATCAACCCAA-GAGGAATAAAAAAG---TTCC-ATA----TC-CACTTTTC-CC-TTTCA---------TA-TT-TCAAA-----TTTCTTTC--TTCA---A-A--------G--G-------------GGTG-G-A--GT-AG--T--TTCTTGCT----CCTAA--ACTT---TCCTGTCTCAGGGACTTGTCG--TCAT-CT-TGAT-G----CC--GCT----------TTCCG--TT--TTCAT----G---TA-AT-GTAAA---------A--T-TC-A--GGT---CAAAG--T---AT-A----CCCG-A---TA-TC-CAGT-C--GTTCTAG-------TC-C-G-CTC-ACT-A-A-C---GATGGCT-CAT----AACCATAGA-AAC-AC-GAG-A-TGAT-C-A--TT-GA-G---GG-----CT-G-AA-TT-ATTCGAG-T---------TGGG-T-----T-AGG-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--A-T-ATCA-T---TGATC--ATT-TCTGA-GCTTGAC-TCTGTTCTG-TT---AAAACGAATTCTCAAA--TC-AAGCGGCAGCT-TCGAC-TAAGACTCGATCAATGCTATCAAGGATGT-------GTAT-TTGA-ACTCTAAAAACTA-A--AG--CA-----------G--TTAAA--------------A--------------AAG--TAA--TTTAT-AGGATATTTTT-AAAAGCCAA-AGAAAAAAAATTGGAAGAGAAAAATCATTT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-GAAGCTGTAAG--CCCG-TCGGAC--TTTTTTTCT--TTGAa
gi|10 : tgaAAATTTT-TT-GAA-GCAGGACCT-AGCCCTGGGCTTTTCTA-T--T---TT-TTAATCC--TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TA-TT-AAA-AACGTGA-C----CAA-AATGC-TGTATAGGCCTATTT-CCAGG----AATAACCTCTCA----AG-CAGTATTTGCAATACA-TCATATT-GAAGTAA-GCATTCTCGCCAT--ATTCT---ACCC-------T-AGGAAATT---C-ATCAACTCAA-GAGGA-TAAAAT-G---TTCT-GTA----TC-CAC-TTTT-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA------------------AA--GGGG-G-TA---G-G-A--GT-AA--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCC--TCAT-CT-TCATAG-A--CC--GCT----------TTCCG--TT--TTCGT----G---TA-ATTGTAAA---------A--T-TA-T--GATTAATAA-GTTT---AT-A--A--CNN-NN--NNNNN-NNNN-N--NNNNNNN-------NN-N-N-NNN-NNN-N-N-N---NNNNNNN-NNN-N-NNNNNNNNNNNNNC-AG-GAG-G-CGAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAC-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--ATG-ATCA-T---T-ATC--A-T-TCTGACGCTTGACCTCTGTTCTG-TT---AAAATG-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCAAGGATGTGTACCCGGTAT-TTCA-ATTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTAT-AGA-TATTTTT-AAAAGCTAA-AGAAAAAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAa
gi|7 : gttgaAAAATCT-TT-GAA--CA-GACCTAAGCCC-GGGCTTTTTC--TATT---TT-TTAATC---TAAGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-AA----A-T----CAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAATA-A-GCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTTA-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-A--------G--G------GG-G-TGGG-----A--GT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGTAAA---------T--T-CA-T--GGT---AAA-G--T---AT-A--ATCCTG-AA--TAATC-CAG--T--GTTCT-G-------TC-T-C-TCC-AC----A-CTGTGATCGCT-C---T-AAGT-ATTCAGAAC-ACTGAG-A-TGAT-CCA--TCTGA-G---GG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAA--ATT-ATCA-T---T-AAC--A-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTAT-AGA-TATTTTT-AAAAAGCAACAGAAAGAGGATTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-CT---AA---CCG-TCGGAC--CTTTTTTTC--TT
gi|6 : ttgAAAATCT-TT-GAA--CA-GACCTAAGCCC-GGGCTTTTTC--TATT---TT-TTAATC---TAAGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-AA----A-T----CAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAATA-A-GCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTTA-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-A--------G--G------GG-G-TGGG-----A--GT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGTAAA---------T--T-CA-T--GGT---AAA-G--T---AT-A--ATCCTG-AA--TAATC-CAG--T--GTTCT-G-------TC-T-C-TCC-AC----A-CTGTGATCGCT-C---T-AAGT-ATTCAGAAC-ACTGAG-A-TGAT-CCA--TCTGA-G---GG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAA--ATT-ATCA-T---T-AAC--A-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTAT-AGA-TATTTTT-AAAAAGCAACAGAAAGAGGATTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-CT---AA---CCG-TCGGAC--CTTTTTTTC--TTtga
gi|12 : ttgAAATTTT-TT-GAAAGCA--ACCTAAGCCCTG--CCTTTTC--A--A---TT-TTAATCCC-TAAGCCCAG-G-AAACTT-ATT--GCCAA-TCCAAG-TTTCTAA-A-TAAAA-ACATAA----A-C----CAA-AATGC-TGTAGAG-CCTATT--CCAG-----AGTAAC-TCTCAGTCCAA-TAGTCATTGCAATCCACTCATAT--GAAAT-AAGCATTCT-GCCATGAATTCT------C-------A-A----------------ACCCAA-GAG----AAAAA-A---TTCC-GTA----TC-CACTTTTC-CC-TTTCA---------TA-TT--CAAA-----T--CTTTC--TTCA---ACA--------G--GA-----------GGATGCG-A---------T--TCCTTGCTT---C-TAA--ACTT---TC--GTCTCAA--ATTTGTCG--TCAT-CT-TGATAA-G--CC---CT----------TTCCG--TTTGTTCA---------TA-ATTGT-AA---------A--T-TACT--GGT---CAA-G--TAAAAT-ATTA-CCC--AA--TAATT-CAGT-C---TTCTAT-------TCACGG-CTC-ACT-A-A-C---GATCACT-CAT----AATCATAGA-AAC-AT-GAG-A-TA---CCA--TT-GA-G---GG-----CTTG-AA-TTAATTCGAG-T---------TAGT-T-----T-AGT-AA--GG-ACA-TTTGC-TT-A--CTTTGTAAA-CAACG-AAAA--ATG-TTC--------AT-----T-TCTGACGC-TGACTTCTG-TTCT-TT---AAAACG-ATTCCC-AATCTC-AAGC-GCACTC-TCGAC-TAA-AC----TCAAG-CTATCAAGGA----------GTAT-TTCA-GTTCT-AAACTT--AACAG--CA-----------AACTTAAA--------------A--------------AAG--T-G---TTAT-AGA-TA-TTTT-AAAAGCC-A-AGAAAAAGA-TTGGAAGAG-AAAATCG-TT--TCTAACA-TTTT-ATTGAAAAATA-TT--TAATTTCAGAAA-G-AGCT---AA--tga
gi|18 : tgaaAAATTTT-TTTGAA-GCA-GACCTGAGCCCTGGGCTTTTTC--TAGT---TT-TTAATCAT--AAGCCC-G-A-AAGATAATTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ATA-TA----A-C----CAA-AATGC-TGTATAGGCCTATTT-CAAAG----AGTAACCTCTCA--TCAG-Cg
gi|33 : gttgaAAATTTT-TT-GAA-GCA-GACCTAAGCCCTGGGCT
gi|26 : gttgaAAATTTT-TT--AA-GCA-AACGTAAGCCATGGGCT-TTTT--C--TAG-TT-TTATTC---TAAACCC-G-A-AAa
gi|38 : ttAAATTTT-TT-GAA-ACA-GACCTAAGCC
gi|9 : gggttgaAATTTT-TT-GAT-GCA-GATCTAAGCCCTGGGCTTTTTC--TAGT---TT-TTAATCCT--AAGCCT-A-A-AAACAA-TTTT-GCCAAGTCCAAG-TTCTAAA-G-TATAA-ACA-TA----A-C----CAA-AATGC-TGTATAGACCTTTTT-CCAGG----AGTAACCTCTCA--GCAG-CAGTATTTGCAGTACA-TCACATT-------A-GCATTCTCGCCAT--ATTCT---ACGT-------A-AGGAAATT---C-ATTAACCCAA-GAGGA-TAAAAA-G---TTCC-ATG----TC-CACATTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA------------------AA--GGGG-G-T---TG-G-A--GT-AG--T--TTTTAGCT----T-TAA--ACTTAAATC-TGTCTCAG--ACTTGTCA--TCTT-CT-TGATGG-G--CT--GCT----------CTCTG--TT--TTCAT----GTATTA-ATTGTAAA---------A--T-TA-T--GAT---TAA-G--T---AT-A--A-CTCG-AA--AAATT-CAGT-C--GTTGTAT-------TC-C-G-CCC-ACT-A-T-C---GATTGTT-CA--C-AAGTCCAAAAGAAC-TG-GAG-A-CAAT-CGA--TC-GA-G---GG-----CTTG-AA-TT-ATTCAAG-T---------CAGG-T-----TAAGTAAA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG-AAAA--ATT-ATCA-TTTAT-ATC--A-T-TCTGACGCTTGACTTCCGTTTTG-TT---AAAACA-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-GAAGA----ATCAAT-CGATCAAGG---------------------------AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTAT-AGA-TATCTTT-AAAAGCCAA-AGAAAAAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTGCAGAAA-A-AGCT---AAG-CCTG-TCGGAC--TTTTTTGT---TTGA
gi|8 : TT-TT-GAA-GC--GACCTA-GCCCTGGGTTTTTCTAAT--T---TT-TTAATCCT--ATGCC--G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAA--G-TATT--ACA-AA----A-T----CAA-A-TGCGTTTAT-GGCCTATAT-TCAGG----AGTAAATTC--A--TCAA-CA-TATTTGCAATACA-TCATA-----AAT-AAGCATT-TC-CCAT--ATTCT---ACC--------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CAC-TTTT-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AGGGGGGGGG--GGG--GGGG-G-GGGGGG-G-A--GT-AG--T--TTCTTG-T----C-T-A--ACTT------TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG---T--TTCAT----G---TA-ATTGTAAA---------A--T-TA-T--GGT---CAA-G------AT-A--A-CCCG-AA--TAATC-CAGCTC--GTTCTAG-------TC-G-C-TGC-ACT-ACA-C---GATGGC--CA--T-AAGTCATAGAGAA--AC-GAG-AGTGATCCCA--TC-GA-G---GG-----C-TG-AA-TT-ATTCGAG-T---------TAGG-G-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-C-ACG--AAA--ATT-ATC--------ATTGAA-TATCTGACGCTTGAC-TCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAA-GATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT--A--------------A--------------AAG--T-A--TTTAT-AGA-TATTTTT-AAAAGCCAA-AAGAAAAA--TTGGAAGAG-AAAATCA--T--T-TAACATTTTT-A-TGGAAAATATTT--T-ATTTC-GAAG-A-AGCT---AAGCCCCG-TCGGAC--TTTTTTCT---TTGAa
gi|22 : tgaaaCCTAAGCCCTGGGCCTTTTC--TAGT---TT-TTAATCCT---AACCC-GTATAAATAT-CATT-GCCAA-TCCAAGTTTGTTAA---------ATA-AA----A-CATAACAA-AATGC---TATAGGTCa
gi|13 : CCTGGGCTTTTTC--TAGT---TT-TTAATCCTATAAGCCC-G-A-AAACTA-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ACA-TA----A-C----CAA-AATGC-TGCATAGACCTATTT-CCAGGTCTGAGTAACCTTTCA--TCAG-CAGTATTTGCAATACA-TCACATT-------A-GCATTCTTGCCAT--ATTCT---ACCCCCACCACA-AGCCAATT---C-ATCAACCCAA-GAGGA-TAAAAA-G---TTCT-GTG----TC-CACTTTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------G--G-----GGG-G-TGGG-----A--GT-AG--T--TTTTTGCT----C-TAA--ATATAAATC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-GG-CC--GCT----------TTCCG--TT--TTCAT----A---TA-ATTGTAAA---------A--T-TA-T--GGTA--TAA-G--T---AT-A--A-CCTG-AA--TAATC-CAGT-T--GTTGTAT-------TC-C-G-CCC-ACT-A-T-C---GATTGCT-CAC---AAGTCGGAAGGAAC-AG-GAG-A-CGAT-CAA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------GATG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG-AATATGATA-A----T---T-ATC--A-T-TCTGACGCTTGACTTCCGTTCTG-TT---GAAGCG-ATTCTC-AA--TC-AAGT-GCAGCT-TTGAC-TAAGAC----TCA-----ATCAAGGATGC-------GTAT-TTCA-GTTCT-AAAACT--A--AG--CA-----------G--TT-ct
gi|15 : T--ATTCT---ACAC-------ATAGAAAATTCTTT-A-CAATCAAA-G-GAA-TAAAAA-AATATTGCAGTAATATTC-TACGCCCC-CT-TTTCAATTAATGAGTA-TTCTCAAAATACTT--ATTTCATTTCACACA-G--------GCTGAT--GAGG-G-AGAGTA-C-ATAGT-AG--TAATATTTGCTATATC-TAACAACTC----C-TGTTTAAAT-ACA-GTCG--TCAT-CT-T--T-G-GGTCT--GCTGGTGTACCATTTCTGAGTC--TTCGTTGACG---TA-ATAGTGAATCAGAACAAA--T-TC-T--GAT-------GC-T---ATGA--A-TCTG-AGATTAATC-C-TA-CTTGTTATAGCTGATGTTC-C-GACTC-CCT-A-ATC---GATCGCT-CAT---AACGGAT-GAAAAC-TG-GAG-A-------CG--TT-TA-G---GGACTCGCCTG-A---T-ATT-GAG-T---------TAGG-T-----TAAGT-AA---G-ACAATTTGCTTTGAATCTTCGCAAA-CAACGAAAAA--AAA-ATCA-T---T-ATC--A-----TGA-GC-TGACTT
gi|14 : acatcacattagttttatctttTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------G--GAA--GGGG-GGTGGGTG-GGA--GT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGTAAA---------A--T-TA-T--GGT---TAA-G--T---AT-A--A-CCCG-AA--TAATC-CAGA-C--GTTCTAG-------TC-C-G-TTC-ACT-A-A-C---GATGGCT-CAT-T-AAGTCATAGAGAAC-AC-GAGAA-TAAT-CCA--TC-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--AAT-ATCA-T---T-ATC--A-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTAT-AGA-TATTTTT-AAAAGCCAA-AG-AAAAAACTT-GAAGAGAAAAATCA-TT--T-TAACATTTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-gg
gi|19 : CTT---TC-TGTTTTAG--ACTTGTTGATCCATTCTCTGAT-GAG--ACTTGCT----------TTCCG--TT--TTCGT----G---TA----GTAAA---------A--T-TA-TTGGATG--TAA-G--T---AT-A--A--CCA-AA--TAATC-CAT--T--GTTATAT-------TC-C-G-
gi|20 : gAA---------A--T-TG-T--AAT---GGA-G--T---CT-A--A-ACCG-AA--TAATC-CAGT-C--GTTATAT-------TC-C-G-CTC-CCT-A-T-C---GATCGC--GAC----AGTCGGAGAGAAC-CG-GAG-A-CGG----------GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|21 : GT---TAA-C--T---AC-G--A-CCGG-GG--TA-TCATATA-T--ATTCCGC-------TC-C-A-TTG-ATT-T---C---TATCGCT-CAT---AAGTCGGAGAGAAC--C-GGG-A-GA----CG-----GA-G---GG-----TTAG-AATTT-ATTCGAG-T---------
gi|29 : gacT-A--A-CCCG-AA--TATTC-CAGT-C--ACTATAGT------TC-C-G-CTC-CCT-A-T-T---GAT
gi|23 : -CCTA-AA--TAACC-CAGT-C--GTTAT---------TC-C-G-CTC-ACG-A-G-C--------TT-CAT---GAGTCGGAGAGAAC-CG-GAG-A-CGGT---------GG-A---GG-----CTTG-AA-TT-ATTCGGG-T---------TAc
gi|25 : tCC-A-A-C---GATCGCTGCTT-TCAAGTCAGAGAAAAC-CG-GAG-A-CA-----------GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|28 : -C---GATCGCT-CAT---AATTCAGAGAGAAC-TG-GAG-A-TG-----------GA-G---GG-----CTTG-AA-TT-ATTCG
gi|31 : ctctgtGTCGGAGAGAAC-CG-GAG-A-CGG----------GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|27 : -GAG-A-AAAT-CGGAGTT-GA-GTATGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|37 : attccgcttactccgatg-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|36 : cggagacgg-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|40 : tcggagacgg-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TA
gi|39 : cggagacgg-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TA
gi|41 : cggagacgg-GA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|35 : cgaagacg-GA-G---GG-----CTTG-GA-TT-ATTCTAG-T---------TA
gi|34 : aaccggagacggA-G---GG-----CTTG-AA-TT-ATTCGAG-T---------TAGA-T-----
gi|16 : ggagtcgagtTTG-TA-AT-ATTTTAG-T---------TA-----------AGT-AA--GG-ACATTTTAC-TTGA--CTTCACAAA-CAACG-AAAA--ATG-ATCATT---T-ATC--A-T-TCTGACGCTTGATTTCCACTCTC-TT---AAAACA-ATTTTC-AA--TC-AAGC-GCAGCT-TCAAC-TAAGACT----CATT-CGATCATGGATGT-------GTAT-TTTG-GTCCT-AAAAAT--A--AG--CA-----------G--TT-GA--------------A--------------AAG--T-A--TTTATAAA--TATTTTT-AGAAGACAA-AGAAAAAGATCT-GAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAa
gi|17 : taaactatCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAA--ATG-ATC--------AT-----T-TCTGACGTTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCA--TATTC-------ACAT-TTCA-GTTCT-AAAACTTAA--AG--CA-----------G--T
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): CAGTCGTTATATTCCTCTCTCTGTCGATCGCTACATTTAATTTTCAGAGAGAAACTGGAGATGGAGGGTT
Unaligned ( gi|30 ): GACTCTATCAGGTAAGGAAAGTTAAACGTACTTTTGATATAAA
Unaligned ( gi|32 ): GGTATATAACATACGATGTGGATGTGAAATACACATGTA
Alignments
lowQualScore : 11 1 2222 11111111111111 111111111 3333333333333 2222222222222 1 1111111111 1111 11111 333333333 111111111 11111 1111 222222222222222222222222222222222222222222222222 11 111
lowQualScore : 2 2 2 2 2 55 2 0000 22 2 2 2 2 0 2 2 5 333 55555 2 2 2 2 6666 33 2 0 3 3 3 33 77777777777777 2 55555 2 2 2 555 2 6666 5 2 2 2 000000000 5 2 66666 33 33 444 2 0000000000000 1111111111111 2 33 33 0 8888 2 99 888 2 55 33 2 2 2 2 55 33 0000000000 33 33 5555 444 2 2 999999999 33 2 55 88 666 999 2 33 4 55 2 2 0 88888888 1 1 1 999 6 88888 2 3 8888 333 1 00000 3 111111111 1 33333 1 1 4 1 000000000 2 11111 7 2 33 7 4 33 2 2 4 444 7 2 2 2 888 2 2 33 2 2 5 5 2222 2 8888888 5 5 22 55 88 55 444444444444444444444444444444444444444444444444 77 2 33 2 2 5 2 5 4 2 2 33 8 5 2 5 2 77 2 3 3 55 99 4 00 444
lowQualScore : . . . . . .. . .... .. . . . . . . . . ... ..... . . . . .... .. . . . . . .. .............. . ..... . . . ... . .... . . . . ......... . . ..... .. .. ... . ............. ............. . .. .. . .... . .. ... . .. .. . . . . .. .. .......... .. .. .... ... . . ......... .. . .. .. ... ... . .. . .. . . . ........ . . . ... . ..... . . .... ... . ..... . ......... . ..... . . . . ......... . ..... . . .. . . .. . . . ... . . . . ... . . .. . . . . .... . ....... . . .. .. .. .. ................................................ .. . .. . . . . . . . . .. . . . . . .. . . . .. .. . .. ...
lowQualScore : 5 5 5 5 4 99 5 0000 99 5 5 7 7 5 7 7 3 333 33333 7 7 7 9 1111 99 9 4 1 1 4 99 11111111111111 9 99999 9 9 9 000 9 1111 7 9 9 9 777777777 3 7 77777 77 77 777 7 5555555555555 3333333333333 7 77 77 3 3333 7 00 888 5 99 44 5 5 5 5 99 44 9999999999 44 44 3333 444 5 5 444444444 22 4 66 11 555 777 2 11 2 00 0 0 6 11111111 9 9 9 000 0 55555 2 8 1111 222 4 99999 0 999999999 4 44444 3 3 0 3 777777777 2 11111 1 4 22 1 7 22 4 4 7 111 1 4 4 5 888 5 5 44 5 5 0 0 2222 5 1111111 0 0 77 99 44 99 777777777777777777777777777777777777777777777777 99 9 99 9 9 7 9 7 0 9 9 99 6 7 9 7 9 99 9 3 3 55 00 4 66 666
consensus : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATCGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
Reference ( family-3562 ) : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATCGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|1 : AAATTTTCTT-GAA-GCAG-ACCTAAGCCCTGGGTCTTTTTCTA--TTTTTTAATC---TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTTTACA-A---AT-CAAA-AATGC-TGTATAGGCCTATTTTCCAGG----AGTAACCTCTCA--TCAAACAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATC-ACCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTT-CGCC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------------AGGGTGGGTGGG---------AGT-AAGTT--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TT-CG--TT--TTCAT----G---TAGATTGTAAAA---------ATTATA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG--CGTTCTAG-------TC-C-G-TT---CAACTA-A---CGATATCT-CAA-T-AAG---TCATAGAGAAC-AC--GAGA-TGATCC-ATC-GAGGGG-----CTTGAAA-TT-ATTCGAG-T---------TAGG-T-----TAAGT-AAAGGA-ACATTTTGC-TTGA--CTTTGTAAACCAACG-AAAAATTAATCAT---T-ATCA-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGACCATATATATCTCTG--CT-AA--------------AACTAAGCAGTTAAAAAG--T-A--TTTATA-GATATTTT---AAAGCCAA-AA-GAA-AAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-ATTGGAAAATA-TT--T-ATTTCAGAAAGG-AGC--TAAG-CCCG--AGGACGGTTATTTTTCCTTTGA
gi|10 : gttgaAAATTTT-TT-GAA-GCAGGACCTA-GCCCTGGG-CTTTT-CTA--TTTTTTAATCCT--AAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTA-AAA-ACGTGA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AATAACCTCTCA----AG-CAGTATTTGCAATACA-TCATATT-GAAGTAAGCATTCTCGCCAT--ATTCT---ACCC-------T-AGGAAATT---C-ATCAACTCAA-GAGGA-TAAAAT-G---TTCT-GTA----TC-CACTTTT-C-C--TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----G--------GGGTAGG-------------AGT-AA--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCC--TCAT-CT-TCAT-A-GA-CC--GCT----------TTCCG--TT--TTCGT----G---TA-ATTGT-AAA---------AT--TA-T--GAT-TAATAAGTTT-AT-A--A-CNNNNN--NNNNNN-NN-NNNNNNNNN-------NN-N-N-NN---N-NNNN-N---NNNNNNNN-NNN-N-NNN---NNNNNNNNN-C-AG--GAGG-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAC-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATG-ATCAT---T-ATCA-T-TCTGACGCTTGACCTCTGTTCTG-TT---AAAATG-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCAAGGATGTGTACCCGGTAT-TTCA-ATTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCTAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAa
gi|11 : gttgaAAATTTT-TT-GA--GCAG-ATCTAAGCCCTGGG-CTTTT-CTA--TTTTTTAATCCT--AAGCCC-G-A-AAACTT-TTTT-GTAAAGTCCAAG-TTGTAAAAG-TATAA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATT--CCAGG----AGTAACCTCTCA--TCAA-CAGTATT-GCAATAC--TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT----CCC-------A-AGGAA-TT---T-ATCAACCCAA-GAGGA-TAAA---G---TTCC-GTA----TC-CACTTTT-C-CCCTTTCA---------TA-TT-TCAA------T--CTTTC--TTCA---A-AG-----GG--GTGGGGGGGGGGT-GGG--------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTTTCAG--ACTTGTTG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------A---TA-T--GGT-CAA---GTA--AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATGGCT-CAT-----A---TCATAGAGAAC-AC--GAGA-TGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAGTT---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---TAATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GTAGCT-TCGAC-T-AGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-ATCTCTATA-AATATTTTTAAAAAGCCAA-AG-AAA-AA-A-TTGGAAGAGAAAATTCA-TTAAT-TAA-A-TTTTAA-TGGAAAATA-TT--T-ATTTCAGAAA-G-
gi|12 : ttgaAAATTTT-TT-GAAAGCA--ACCTAAGCCCTG---CCTTTTCAA--TTTT--AATCCC-TAAGCCCAG-G-AAACTT-ATT--GCCAA-TCCAAG-TTTCTAA-A-TAAAA-ACATA---AA-CCAA-AATGC-TGTAGAG-CCTATT--CCAG-----AGTAAC-TCTCAGTCCAA-TAGTCATTGCAATCCACTCATAT--GAAATAAGCATTCT-GCCATGAATTCT------C-------A-A----------------ACCCAA-GAG----AAAAA-A---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT--CAAA-----T--CTTTC--TTCA---ACAG-----GA--G---GATGCGA----------------------T--TCCTTGCTT---C-TAA--ACTT---TC--GTCTCAA--ATTTGTCG--TCAT-CT-TGATAA-G--CC---CT----------TTCCG--TTTGTTCA---------TA-ATTGT--AA---------AT--TACT--GGT-CAA---GTAAAAT-ATTA-CCC-AA--TAATTC-AG-TC-TTCTAT-------TCACGG-CT---C-ACTA-A---CGATCACT-CAT----AA---TCATAGA-AAC-AT--GAGA-TA--CC-ATT-GA-GGG-----CTTG-AA-TTAATTCGAG-T---------TAGT-T-----T-AGT-AA--GG-ACA-TTTGC-TT-A--CTTTGTAAA-CAACG-AAAAATG-TTCAT----------T-TCTGACGC-TGACTTCTGTTCT--TT---AAAACG-ATTCCC-AATCTC-AAGC-GCACTC-TCGAC-TAA-AC----TCAAG-CTATCAAGGA----------GTAT-TTCA-GTTCT-AAACTT--AACAG--CA-----------AACTTAAA--------------A--------------AAG--T-G---TTATA-GATA-TTTT-AAAAGCC-A-AG-AAA-AAGA-TTGGAAGAG-AAAATCG-TT--TCTAACA-TTTT-ATTGAAAAATA-TT--TAATTTCAGAAA-G-AGC--TAAG-
gi|13 : tgaaCCTGGG-CTTTTTCTAG-TTTTT-AATCCTATAAGCCC-G-A-AAACTA-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ACA-T---AA-CCAA-AATGC-TGCATAGACCTATTT-CCAGGTCTGAGTAACCTTTCA--TCAG-CAGTATTTGCAATACA-TCACATT-------AGCATTCTTGCCAT--ATTCT---ACCCCCACCACA-AGCCAATT---C-ATCAACCCAA-GAGGA-TAAAAA-G---TTCT-GTG----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG---------G---GGGGTG----GG---------AGT-AG--T--TTTTTGCT----C-TAA--ATATAAATC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGATGG-G--CC--GCT----------TTCCG--TT--TTCAT----A---TA-ATTGT-AAA---------AT--TA-T--GGTATAA---GT---AT-A--A-CCTGAA--TAATCC-AG-TTGTTGTAT-------TC-C-G-CC---C-ACTA-T---CGATTGCT-CA--C-AAG---TCGGAAGGAAC-AG--GAGA-CGATCA-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------GATG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG--AATATG-ATAAT---T-ATCA-T-TCTGACGCTTGACTTCCGTTCTG-TT---GAAGCG-ATTCTC-AA--TC-AAGT-GCAGCT-TTGAC-TAAGACTCA---------ATCAAGGATGC-------GTAT-TTCA-GTTCT-AAAACT--A--AG--CA-----------G--TT-
gi|14 : TTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAAGG---GGGGTGGGT-GGG--------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GT---AT-A--A-CCCGAA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTA-A---CGATGGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGAATAATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAAAT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AA-A-CTTGAAGAGAAAAATCA-TT--T-TAACATTTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-
gi|15 : T--ATTCT---ACAC-------ATAGAAAATTCTTT-A-CAATCAAA-G-GAA-TAAAAA-AATATTGCAGTAATATTC-TACGCCC-C-CT-TTTCAATTAATGAGTA-TTCTCAAAATACTT--ATTTCATTTCACACA-GGCTGATGA--G---GGAGAGTAC-AT---------AGT-AG--TAATATTTGCTATATC-TAACAACTC----C-TGTTTAAAT-ACA-GTCG--TCAT-CT-T--T-G-GGTCT--GCTGGTGTACCATTTCTGAGTC--TTCGTTGACG---TA-ATAGT-GAATCAGAACAAAT--TC-T--GATGC------T---ATGA--A-TCTGAGATTAATCCTAC-TTGTTATAGCTGATGTTC-C-GACT---C-CCTA-AT--CGATCGCT-CAT---AAC---GGAT-GAAAAC-TG--GAGA-CG------TT-TA-GGGACTCGCCTG-A---T-ATT-GAG-T---------TAGG-T-----TAAGT-AA---G-ACAATTTGCTTTGAATCTTCGCAAA-CAACGAAAAAAAA-ATCAT---T-ATCA-----TGA-GC-TGACTT
gi|16 : acatcacattagttttatctttTTG-TA-AT-ATTTTAG-T---------TA-----------AGT-AA--GG-ACATTTTAC-TTGA--CTTCACAAA-CAACG-AAAAATG-ATCAT---TTATCA-T-TCTGACGCTTGATTTCCACTCTC-TT---AAAACA-ATTTTC-AA--TC-AAGC-GCAGCT-TCAAC-TAAGACTC-AT---T-CGATCATGGATGT-------GTAT-TTTG-GTCCT-AAAAAT--A--AG--CA-----------G--TT-GA--------------A--------------AAG--T-A--TTTATA-AATATTTTT-AGAAGACAA-AG-AAA-AAGA-TCTGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAgg
gi|17 : taaactatCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATG-ATCAT---T--------TCTGACGTTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCA--TATTC-------ACAT-TTCA-GTTCT-AAAACTTAA--AG--CA-----------G--T
gi|18 : AAATTTT-TTTGAA-GCAG-ACCTGAGCCCTGGG-CTTTTTCTAG-TTTTT-AATCAT--AAGCCC-G-A-AAGATAATTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ATA-T---AA-CCAA-AATGC-TGTATAGGCCTATTT-CAAAG----AGTAACCTCTCA--TCAG-C
gi|19 : gttgaCTT---TC-TGTTTTAG--ACTTGTTGATCCATTCTCTGAT-GAG--ACTTGCT----------TTCCG--TT--TTCGT----G---TA----GT-AAA---------AT--TA-TTGGATGTAA---GT---AT-A--A--CCAAA--TAATCC-A--TTGTTATAT-------TC-C-G-
gi|2 : gAAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTAT-TTTTT-AATCC--TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AA-TCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATCACCCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------------AGGGTGGGT-GG---------AGTAAG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-TA-GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-TT---CAACTA-A---CGATATCT-CATAT-AAG---TCATAGAGAAC-AC--GAGA-TGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GGAACATTTTGCTTTGA----TTGTAAA-CAACG-AAAAATTAATCAT---T-ATCA-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TCAAAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGA-CATATATATCTCTG--CT-AAAACTAAGCAGTTAAA--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-ACGGAC--TTTTTTCT---TTGA
gi|20 : gttgaAA---------AT--TG-T--AAT-GGA---GT---CT-A--A-ACCGAA--TAATCC-AG-TCGTTATAT-------TC-C-G-CT---C-CCTA-T---CGATCGC--GAC----AG---TCGGAGAGAAC-CG--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Ta
gi|21 : TAT-------TC-C-G-CT---CCATTG-ATTTCTATCGCT-CAT---AAG---TCGGAGAGAAC--CGGGAGA-CG---------GA-GGG-----TTAG-AATTT-ATTCGAG-T---------
gi|22 : gacgttaactacgaccggggtatcatataCCTAAGCCCTGGG-CCTTTTCTAG-TTTTT-AATCCT---AACCC-GTATAAATAT-CATT-GCCAA-TCCAAGTTTGTTAA-A-TA-AA-ACA-T---AA--CAA-AATGC---TATAGGTC
gi|23 : -CCTAAA--TAACCC-AG-TCGTTAT---------TC-C-G-CT---C-ACGA-G---C-----TT-CAT---GAG---TCGGAGAGAAC-CG--GAGA-CGGT-------GG-AGG-----CTTG-AA-TT-ATTCGGG-T---------TAct
gi|24 : tC-AG-TCGTTATAT-------TC-C-T-CT---C-TCTG-T---CGATCGCTACAT-T-TAATTTTCAGAGAGAA--ACTGGAGA-TG
gi|25 : CCA-A---CGATCGCTGCTT-TCAAG---TCAGAGAAAAC-CG--GAGA-CA---------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Tgagggtt
gi|26 : AAATTTT-TT--AA-GCAA-ACGTAAGCCATGGG-CTTTTTCTA--GTTTT-ATTC---TAAACCC-G-A-AA
gi|27 : ttGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|28 : attccgcttactccgatggagaaaatcggagttgagtat---CGATCGCT-CAT---AAT---TCAGAGAGAAC-TG--GAGA-TG---------GA-GGG-----CTTG-AA-TT-ATTCG
gi|29 : ctctgtT-A--A-CCCGAA--TATTCC-AG-TCACTATAGT------TC-C-G-CT---C-CCTA-T---TGATC
gi|3 : AAATTTT-T--GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTTCT--TTTCT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AAACCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATTTGAAATA-GCATTCTCGC-AT--ATTCT---ACCC-------A-GGAAAATT---T-ATCAACCCAAAGAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAAGG---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GG---AT-A--A-CCCGAAA-TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTA-AA--CGATGGCT-CAT-T-AAG---TCATA-AGAACAAC--GAGA-TAATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGGTT-----T-AGT-AA--GG-ACATTTTGC--TGA--CTTTGTAAA-CAACG-AAAAATT-ATC-T---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTGTTT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT--AAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-G-TATTTTT-AAAAGCCAA-AG-AAA-AAAC-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGC--TAAG-CCCGTTCGGACT-TTTTTTTTC--TTGA
gi|31 : gttggG---TCGGAGAGAAC-CG--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Ta
gi|33 : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CT
gi|34 : gttgaA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGA-T-----a
gi|35 : ggagtcgagt--GAGA-CGG--------GA-GGG-----CTTG-GA-TT-ATTCTAG-T---------TAa
gi|36 : aaccg--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|37 : tcg--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|38 : cgAAATTTT-TT-GAA-ACAG-ACCTAAGCC
gi|39 : gggttga--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TA
gi|4 : cgAAAATTT-TT-GAA-GCAG-ACCTAAGCCCAGGG-CTTTTTCTA--TTTT--AATCCT---AACCC-G-A-AAACTT-TTTTTGCCAGTTCCAAG-TTGTAAA-G-TATTT-ATA-A---AA-TCAATAATGC-TGT-TAGGCCTATTT-CCCAG----AGTAACCCC--A--TCAA-CAGTATT-GCAATACA-TCATATT-GAAATAAGCATCCTCGCCAT--ATTCT---TACC-------A-AGGAAATT---TTATCAACCCAA-GAGGAATAAAAAAG---TTCC-ATA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----TTTCTTTC--TTCA---A-AG-----G-------------GGT-GG---------AGT-AG--T--TTCTTGCT----CCTAA--ACTT---TCCTGTCTCAGGGACTTGTCG--TCAT-CT-TGAT-G----CC--GCT----------TTCCG--TT--TTCAT----G---TA-AT-GT-AAA---------AT--TC-A--GGT-CAAA--GT---AT-A----CCCGA---TA-TCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATGGCT-CAT----AA---CCATAGA-AAC-AC--GAGA-TGATC--ATT-GA-GGG-----CT-G-AA-TT-ATTCGAG-T---------TGGG-T-----T-AGG-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAA-T-ATCAT---TGATCATT-TCTGA-GCTTGAC-TCTGTTCTG-TT---AAAACGAATTCTCAAA--TC-AAGCGGCAGCT-TCGAC-TAAGACTCGATCAATGCTATCAAGGATGT-------GTAT-TTGA-ACTCTAAAAACTA-A--AG--CA-----------G--TTAAA--------------A--------------AAG--TAA--TTTATAGGATATTTTT-AAAAGCCAA-AGAAAA-AAAA-TTGGAAGAGAAAAATCATTT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-GAAGCTGTAAG-CCCG-TCGGAC--TTTTTTTCT--TTGA
gi|40 : tga--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAa
gi|41 : cg-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|5 : cgaagacgAAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTT-TC--TTTCT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATA-GCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-T-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAA-G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GT---AT-A--A-CCCGAA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTA-A---CGATGGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-TAATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATC-T---T-ATCA-T-TCTGACGCTTGACTTCTG-TCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-G-TATTTTT-AAAAGCCAA-AG-AAA-AAAACTTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGC--TAA--CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|6 : AAAATCT-TT-GAA--CAG-ACCTAAGCCC-GGG-CTTTTTCTA--TTTTTTAATC---TAAGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-A---AA-TCAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAA-TAAGCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTT-A-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-AG-----G--------GGGTGGG-------------AGT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGT-AAA---------TT--CA-T--GGT-AAA---GT---AT-A--ATCCTGAA--TAATCC-AG-T-GTTCT-G-------TC-T---CTCCAC-ACT--G---TGATCGCT-C---T-AAG---T-ATTCAGAAC-ACT-GAGA-TGATCC-ATCTGA-GGG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAAATT-ATCAT---T-AACA-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTATA-GATATTTTT-AAAAAGCAACAG-AAAGAGGA-TTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-C--TAA---CCG-TCGGAC--CTTTTTTTC--TT
gi|7 : ttgAAAATCT-TT-GAA--CAG-ACCTAAGCCC-GGG-CTTTTTCTA--TTTTTTAATC---TAAGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-A---AA-TCAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAA-TAAGCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTT-A-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-AG-----G--------GGGTGGG-------------AGT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGT-AAA---------TT--CA-T--GGT-AAA---GT---AT-A--ATCCTGAA--TAATCC-AG-T-GTTCT-G-------TC-T---CTCCAC-ACT--G---TGATCGCT-C---T-AAG---T-ATTCAGAAC-ACT-GAGA-TGATCC-ATCTGA-GGG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAAATT-ATCAT---T-AACA-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTATA-GATATTTTT-AAAAAGCAACAG-AAAGAGGA-TTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-C--TAA---CCG-TCGGAC--CTTTTTTTC--TTtga
gi|8 : ttgTT-TT-GAA-GC-G-ACCTA-GCCCTGGG--TTTTTCTAATTTTTT-AATCCT--ATGCC--G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAA--G-TATTA--CA-A---AA-TCAA-A-TGCGTTTAT-GGCCTATAT-TCAGG----AGTAAATTC--A--TCAA-CA-TATTTGCAATACA-TCATA-----AATAAGCATT-TC-CCAT--ATTCT---ACC--------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-C--TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GG--G---GGGGGGGGG-GGGGGGGGGGGAGT-AG--T--TTCTTG-T----C-TAA---CTT---T---GTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--T-CAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---G----AT-A--A-CCCGAA--TAATCC-AGCTCGTTCTAG-------TC---G-CTG--C-ACTACA---CGATGGC--CAT---AAG---TCATAGAGAA--AC--GAGAGTGATCCCATC-GA-GGG-----CT-G-AA-TT-ATTCGAG-T---------TAGG-G-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CA-CG-AAAA-TT-ATCAT---T-G-AA-TATCTGACGCTTGACT-CTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAA-GATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT--A--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-A--AGA-AAAA-TTGGAAGAG-AAAATCA--T--T-TAACATTTTT-A-TGGAAAATATTT--T-ATTTC-GAAG-A-AGC--TAAGCCCCG-TCGGAC--TTTTTTCT---TTGAtga
gi|9 : tgaaaAATTTT-TT-GAT-GCAG-ATCTAAGCCCTGGG-CTTTTTCTAG-TTTTT-AATCC--TAAGCCT-A-A-AAACAA-TTTT-GCCAAGTCCAAG-TTCTAAA-G-TATAA-ACA-T---AA-CCAA-AATGC-TGTATAGACCTTTTT-CCAGG----AGTAACCTCTCA--GCAG-CAGTATTTGCAGTACA-TCACATT-------AGCATTCTCGCCAT--ATTCT---ACGT-------A-AGGAAATT---C-ATTAACCCAA-GAGGA-TAAAAA-G---TTCC-ATG----TC-CACATTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A---------A--G---GGGGT---T-GG---------AGT-AG--T--TTTTAGCT----T-TAA--ACTTAAATC-TGTCTCAG--ACTTGTCA--TCTT-CT-TGATGG-G--CT--GCT----------CTCTG--TT--TTCAT----GTATTA-ATTGT-AAA---------AT--TA-T--GAT-TAA---GT---AT-A--A-CTCGAA--AAATTC-AG-TCGTTGTAT-------TC-C-G-CC---C-ACTA-T---CGATTGTT-CA--C-AAG---TCCAAAAGAAC-TG--GAGA-CAATCG-ATC-GA-GGG-----CTTG-AA-TT-ATTCAAG-T---------CAGG-T-----TAAGTAAA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG-AAAAATT-ATCATTTAT-ATCA-T-TCTGACGCTTGACTTCCGTTTTG-TT---AAAACA-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-GAAGA----ATCAAT-CGATCAAGG---------------------------AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATCTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTGCAGAAA-A-AGC--TAAG-CCTG-TCGGAC--TTTTTTGT---TTGAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GACTCTATCAGGTAAGGAAAGTTAAACGTACTTTTGATATAAA
Unaligned ( gi|32 ): GGTATATAACATACGATGTGGATGTGAAATACACATGTA
Alignments
lowQualScore : 11 1 2222 11111111111111 111111111 3333333333333 2222222222222 1 1111111111 1111 11111 333333333 111111111 11111 1111 222222222222222222222222222222222222222222222222 11 111
lowQualScore : 2 2 2 2 2 55 2 0000 22 2 2 2 2 0 2 2 5 333 55555 2 2 2 2 6666 33 2 0 3 3 3 33 77777777777777 2 55555 2 2 2 555 2 6666 5 2 2 2 000000000 5 2 66666 33 33 444 2 0000000000000 1111111111111 2 33 33 0 8888 2 99 888 2 55 33 2 2 2 2 55 33 0000000000 33 33 5555 444 2 2 999999999 33 2 55 88 666 999 2 33 4 55 2 2 0 88888888 1 1 1 999 6 88888 2 3 8888 333 1 00000 3 111111111 1 33333 1 1 4 1 000000000 2 11111 7 2 33 7 4 33 2 2 4 444 7 2 2 2 888 2 2 33 2 2 5 5 2222 2 8888888 5 5 22 55 88 55 444444444444444444444444444444444444444444444444 77 2 33 2 2 5 2 5 4 2 2 33 8 5 2 5 2 77 2 3 3 55 99 4 00 444
lowQualScore : . . . . . .. . .... .. . . . . . . . . ... ..... . . . . .... .. . . . . . .. .............. . ..... . . . ... . .... . . . . ......... . . ..... .. .. ... . ............. ............. . .. .. . .... . .. ... . .. .. . . . . .. .. .......... .. .. .... ... . . ......... .. . .. .. ... ... . .. . .. . . . ........ . . . ... . ..... . . .... ... . ..... . ......... . ..... . . . . ......... . ..... . . .. . . .. . . . ... . . . . ... . . .. . . . . .... . ....... . . .. .. .. .. ................................................ .. . .. . . . . . . . . .. . . . . . .. . . . .. .. . .. ...
lowQualScore : 5 5 5 5 4 99 5 0000 99 5 5 7 7 5 7 7 3 333 33333 7 7 7 9 1111 99 9 4 1 1 4 99 11111111111111 9 99999 9 9 9 000 9 1111 7 9 9 9 777777777 3 7 77777 77 77 777 7 5555555555555 3333333333333 7 77 77 3 3333 7 00 888 5 99 44 5 5 5 5 99 44 9999999999 44 44 3333 444 5 5 444444444 22 4 66 11 555 777 2 11 2 00 0 0 6 11111111 9 9 9 000 0 55555 2 8 1111 222 4 99999 0 999999999 4 44444 3 3 0 3 777777777 2 11111 1 4 22 1 7 22 4 4 7 111 1 4 4 5 888 5 5 44 5 5 0 0 2222 5 1111111 0 0 77 99 44 99 777777777777777777777777777777777777777777777777 99 9 99 9 9 7 9 7 0 9 9 99 6 7 9 7 9 99 9 3 3 55 00 4 66 666
consensus : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATCGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
Reference ( family-3562 ) : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATCGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|1 : AAATTTTCTT-GAA-GCAG-ACCTAAGCCCTGGGTCTTTTTCTA--TTTTTTAATC---TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTTTACA-A---AT-CAAA-AATGC-TGTATAGGCCTATTTTCCAGG----AGTAACCTCTCA--TCAAACAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATC-ACCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTT-CGCC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------------AGGGTGGGTGGG---------AGT-AAGTT--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TT-CG--TT--TTCAT----G---TAGATTGTAAAA---------ATTATA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG--CGTTCTAG-------TC-C-G-TT---CAACTA-A---CGATATCT-CAA-T-AAG---TCATAGAGAAC-AC--GAGA-TGATCC-ATC-GAGGGG-----CTTGAAA-TT-ATTCGAG-T---------TAGG-T-----TAAGT-AAAGGA-ACATTTTGC-TTGA--CTTTGTAAACCAACG-AAAAATTAATCAT---T-ATCA-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGACCATATATATCTCTG--CT-AA--------------AACTAAGCAGTTAAAAAG--T-A--TTTATA-GATATTTT---AAAGCCAA-AA-GAA-AAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-ATTGGAAAATA-TT--T-ATTTCAGAAAGG-AGC--TAAG-CCCG--AGGACGGTTATTTTTCCTTTGA
gi|10 : gttgaAAATTTT-TT-GAA-GCAGGACCTA-GCCCTGGG-CTTTT-CTA--TTTTTTAATCCT--AAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTA-AAA-ACGTGA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AATAACCTCTCA----AG-CAGTATTTGCAATACA-TCATATT-GAAGTAAGCATTCTCGCCAT--ATTCT---ACCC-------T-AGGAAATT---C-ATCAACTCAA-GAGGA-TAAAAT-G---TTCT-GTA----TC-CACTTTT-C-C--TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----G--------GGGTAGG-------------AGT-AA--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCC--TCAT-CT-TCAT-A-GA-CC--GCT----------TTCCG--TT--TTCGT----G---TA-ATTGT-AAA---------AT--TA-T--GAT-TAATAAGTTT-AT-A--A-CNNNNN--NNNNNN-NN-NNNNNNNNN-------NN-N-N-NN---N-NNNN-N---NNNNNNNN-NNN-N-NNN---NNNNNNNNN-C-AG--GAGG-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAC-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATG-ATCAT---T-ATCA-T-TCTGACGCTTGACCTCTGTTCTG-TT---AAAATG-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCAAGGATGTGTACCCGGTAT-TTCA-ATTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCTAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAa
gi|11 : gttgaAAATTTT-TT-GA--GCAG-ATCTAAGCCCTGGG-CTTTT-CTA--TTTTTTAATCCT--AAGCCC-G-A-AAACTT-TTTT-GTAAAGTCCAAG-TTGTAAAAG-TATAA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATT--CCAGG----AGTAACCTCTCA--TCAA-CAGTATT-GCAATAC--TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT----CCC-------A-AGGAA-TT---T-ATCAACCCAA-GAGGA-TAAA---G---TTCC-GTA----TC-CACTTTT-C-CCCTTTCA---------TA-TT-TCAA------T--CTTTC--TTCA---A-AG-----GG--GTGGGGGGGGGGT-GGG--------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTTTCAG--ACTTGTTG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------A---TA-T--GGT-CAA---GTA--AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATGGCT-CAT-----A---TCATAGAGAAC-AC--GAGA-TGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAGTT---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---TAATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GTAGCT-TCGAC-T-AGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-ATCTCTATA-AATATTTTTAAAAAGCCAA-AG-AAA-AA-A-TTGGAAGAGAAAATTCA-TTAAT-TAA-A-TTTTAA-TGGAAAATA-TT--T-ATTTCAGAAA-G-
gi|12 : ttgaAAATTTT-TT-GAAAGCA--ACCTAAGCCCTG---CCTTTTCAA--TTTT--AATCCC-TAAGCCCAG-G-AAACTT-ATT--GCCAA-TCCAAG-TTTCTAA-A-TAAAA-ACATA---AA-CCAA-AATGC-TGTAGAG-CCTATT--CCAG-----AGTAAC-TCTCAGTCCAA-TAGTCATTGCAATCCACTCATAT--GAAATAAGCATTCT-GCCATGAATTCT------C-------A-A----------------ACCCAA-GAG----AAAAA-A---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT--CAAA-----T--CTTTC--TTCA---ACAG-----GA--G---GATGCGA----------------------T--TCCTTGCTT---C-TAA--ACTT---TC--GTCTCAA--ATTTGTCG--TCAT-CT-TGATAA-G--CC---CT----------TTCCG--TTTGTTCA---------TA-ATTGT--AA---------AT--TACT--GGT-CAA---GTAAAAT-ATTA-CCC-AA--TAATTC-AG-TC-TTCTAT-------TCACGG-CT---C-ACTA-A---CGATCACT-CAT----AA---TCATAGA-AAC-AT--GAGA-TA--CC-ATT-GA-GGG-----CTTG-AA-TTAATTCGAG-T---------TAGT-T-----T-AGT-AA--GG-ACA-TTTGC-TT-A--CTTTGTAAA-CAACG-AAAAATG-TTCAT----------T-TCTGACGC-TGACTTCTGTTCT--TT---AAAACG-ATTCCC-AATCTC-AAGC-GCACTC-TCGAC-TAA-AC----TCAAG-CTATCAAGGA----------GTAT-TTCA-GTTCT-AAACTT--AACAG--CA-----------AACTTAAA--------------A--------------AAG--T-G---TTATA-GATA-TTTT-AAAAGCC-A-AG-AAA-AAGA-TTGGAAGAG-AAAATCG-TT--TCTAACA-TTTT-ATTGAAAAATA-TT--TAATTTCAGAAA-G-AGC--TAAG-
gi|13 : tgaaCCTGGG-CTTTTTCTAG-TTTTT-AATCCTATAAGCCC-G-A-AAACTA-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ACA-T---AA-CCAA-AATGC-TGCATAGACCTATTT-CCAGGTCTGAGTAACCTTTCA--TCAG-CAGTATTTGCAATACA-TCACATT-------AGCATTCTTGCCAT--ATTCT---ACCCCCACCACA-AGCCAATT---C-ATCAACCCAA-GAGGA-TAAAAA-G---TTCT-GTG----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG---------G---GGGGTG----GG---------AGT-AG--T--TTTTTGCT----C-TAA--ATATAAATC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGATGG-G--CC--GCT----------TTCCG--TT--TTCAT----A---TA-ATTGT-AAA---------AT--TA-T--GGTATAA---GT---AT-A--A-CCTGAA--TAATCC-AG-TTGTTGTAT-------TC-C-G-CC---C-ACTA-T---CGATTGCT-CA--C-AAG---TCGGAAGGAAC-AG--GAGA-CGATCA-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------GATG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG--AATATG-ATAAT---T-ATCA-T-TCTGACGCTTGACTTCCGTTCTG-TT---GAAGCG-ATTCTC-AA--TC-AAGT-GCAGCT-TTGAC-TAAGACTCA---------ATCAAGGATGC-------GTAT-TTCA-GTTCT-AAAACT--A--AG--CA-----------G--TT-
gi|14 : TTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAAGG---GGGGTGGGT-GGG--------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GT---AT-A--A-CCCGAA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTA-A---CGATGGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGAATAATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAAAT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AA-A-CTTGAAGAGAAAAATCA-TT--T-TAACATTTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-
gi|15 : T--ATTCT---ACAC-------ATAGAAAATTCTTT-A-CAATCAAA-G-GAA-TAAAAA-AATATTGCAGTAATATTC-TACGCCC-C-CT-TTTCAATTAATGAGTA-TTCTCAAAATACTT--ATTTCATTTCACACA-GGCTGATGA--G---GGAGAGTAC-AT---------AGT-AG--TAATATTTGCTATATC-TAACAACTC----C-TGTTTAAAT-ACA-GTCG--TCAT-CT-T--T-G-GGTCT--GCTGGTGTACCATTTCTGAGTC--TTCGTTGACG---TA-ATAGT-GAATCAGAACAAAT--TC-T--GATGC------T---ATGA--A-TCTGAGATTAATCCTAC-TTGTTATAGCTGATGTTC-C-GACT---C-CCTA-AT--CGATCGCT-CAT---AAC---GGAT-GAAAAC-TG--GAGA-CG------TT-TA-GGGACTCGCCTG-A---T-ATT-GAG-T---------TAGG-T-----TAAGT-AA---G-ACAATTTGCTTTGAATCTTCGCAAA-CAACGAAAAAAAA-ATCAT---T-ATCA-----TGA-GC-TGACTT
gi|16 : acatcacattagttttatctttTTG-TA-AT-ATTTTAG-T---------TA-----------AGT-AA--GG-ACATTTTAC-TTGA--CTTCACAAA-CAACG-AAAAATG-ATCAT---TTATCA-T-TCTGACGCTTGATTTCCACTCTC-TT---AAAACA-ATTTTC-AA--TC-AAGC-GCAGCT-TCAAC-TAAGACTC-AT---T-CGATCATGGATGT-------GTAT-TTTG-GTCCT-AAAAAT--A--AG--CA-----------G--TT-GA--------------A--------------AAG--T-A--TTTATA-AATATTTTT-AGAAGACAA-AG-AAA-AAGA-TCTGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAgg
gi|17 : taaactatCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATG-ATCAT---T--------TCTGACGTTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCA--TATTC-------ACAT-TTCA-GTTCT-AAAACTTAA--AG--CA-----------G--T
gi|18 : AAATTTT-TTTGAA-GCAG-ACCTGAGCCCTGGG-CTTTTTCTAG-TTTTT-AATCAT--AAGCCC-G-A-AAGATAATTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ATA-T---AA-CCAA-AATGC-TGTATAGGCCTATTT-CAAAG----AGTAACCTCTCA--TCAG-C
gi|19 : gttgaCTT---TC-TGTTTTAG--ACTTGTTGATCCATTCTCTGAT-GAG--ACTTGCT----------TTCCG--TT--TTCGT----G---TA----GT-AAA---------AT--TA-TTGGATGTAA---GT---AT-A--A--CCAAA--TAATCC-A--TTGTTATAT-------TC-C-G-
gi|2 : gAAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTAT-TTTTT-AATCC--TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AA-TCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATCACCCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------------AGGGTGGGT-GG---------AGTAAG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-TA-GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-TT---CAACTA-A---CGATATCT-CATAT-AAG---TCATAGAGAAC-AC--GAGA-TGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GGAACATTTTGCTTTGA----TTGTAAA-CAACG-AAAAATTAATCAT---T-ATCA-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TCAAAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGA-CATATATATCTCTG--CT-AAAACTAAGCAGTTAAA--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-ACGGAC--TTTTTTCT---TTGA
gi|20 : gttgaAA---------AT--TG-T--AAT-GGA---GT---CT-A--A-ACCGAA--TAATCC-AG-TCGTTATAT-------TC-C-G-CT---C-CCTA-T---CGATCGC--GAC----AG---TCGGAGAGAAC-CG--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Ta
gi|21 : TAT-------TC-C-G-CT---CCATTG-ATTTCTATCGCT-CAT---AAG---TCGGAGAGAAC--CGGGAGA-CG---------GA-GGG-----TTAG-AATTT-ATTCGAG-T---------
gi|22 : gacgttaactacgaccggggtatcatataCCTAAGCCCTGGG-CCTTTTCTAG-TTTTT-AATCCT---AACCC-GTATAAATAT-CATT-GCCAA-TCCAAGTTTGTTAA-A-TA-AA-ACA-T---AA--CAA-AATGC---TATAGGTC
gi|23 : -CCTAAA--TAACCC-AG-TCGTTAT---------TC-C-G-CT---C-ACGA-G---C-----TT-CAT---GAG---TCGGAGAGAAC-CG--GAGA-CGGT-------GG-AGG-----CTTG-AA-TT-ATTCGGG-T---------TAct
gi|24 : tC-AG-TCGTTATAT-------TC-C-T-CT---C-TCTG-T---CGATCGCTACAT-T-TAATTTTCAGAGAGAA--ACTGGAGA-TG
gi|25 : CCA-A---CGATCGCTGCTT-TCAAG---TCAGAGAAAAC-CG--GAGA-CA---------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Tgagggtt
gi|26 : AAATTTT-TT--AA-GCAA-ACGTAAGCCATGGG-CTTTTTCTA--GTTTT-ATTC---TAAACCC-G-A-AA
gi|27 : ttGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|28 : attccgcttactccgatggagaaaatcggagttgagtat---CGATCGCT-CAT---AAT---TCAGAGAGAAC-TG--GAGA-TG---------GA-GGG-----CTTG-AA-TT-ATTCG
gi|29 : ctctgtT-A--A-CCCGAA--TATTCC-AG-TCACTATAGT------TC-C-G-CT---C-CCTA-T---TGATC
gi|3 : AAATTTT-T--GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTTCT--TTTCT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AAACCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATTTGAAATA-GCATTCTCGC-AT--ATTCT---ACCC-------A-GGAAAATT---T-ATCAACCCAAAGAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAAGG---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GG---AT-A--A-CCCGAAA-TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTA-AA--CGATGGCT-CAT-T-AAG---TCATA-AGAACAAC--GAGA-TAATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGGTT-----T-AGT-AA--GG-ACATTTTGC--TGA--CTTTGTAAA-CAACG-AAAAATT-ATC-T---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTGTTT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT--AAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-G-TATTTTT-AAAAGCCAA-AG-AAA-AAAC-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGC--TAAG-CCCGTTCGGACT-TTTTTTTTC--TTGA
gi|31 : gttggG---TCGGAGAGAAC-CG--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Ta
gi|33 : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CT
gi|34 : gttgaA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGA-T-----a
gi|35 : ggagtcgagt--GAGA-CGG--------GA-GGG-----CTTG-GA-TT-ATTCTAG-T---------TAa
gi|36 : aaccg--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|37 : tcg--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|38 : cgAAATTTT-TT-GAA-ACAG-ACCTAAGCC
gi|39 : gggttga--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TA
gi|4 : cgAAAATTT-TT-GAA-GCAG-ACCTAAGCCCAGGG-CTTTTTCTA--TTTT--AATCCT---AACCC-G-A-AAACTT-TTTTTGCCAGTTCCAAG-TTGTAAA-G-TATTT-ATA-A---AA-TCAATAATGC-TGT-TAGGCCTATTT-CCCAG----AGTAACCCC--A--TCAA-CAGTATT-GCAATACA-TCATATT-GAAATAAGCATCCTCGCCAT--ATTCT---TACC-------A-AGGAAATT---TTATCAACCCAA-GAGGAATAAAAAAG---TTCC-ATA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----TTTCTTTC--TTCA---A-AG-----G-------------GGT-GG---------AGT-AG--T--TTCTTGCT----CCTAA--ACTT---TCCTGTCTCAGGGACTTGTCG--TCAT-CT-TGAT-G----CC--GCT----------TTCCG--TT--TTCAT----G---TA-AT-GT-AAA---------AT--TC-A--GGT-CAAA--GT---AT-A----CCCGA---TA-TCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATGGCT-CAT----AA---CCATAGA-AAC-AC--GAGA-TGATC--ATT-GA-GGG-----CT-G-AA-TT-ATTCGAG-T---------TGGG-T-----T-AGG-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAA-T-ATCAT---TGATCATT-TCTGA-GCTTGAC-TCTGTTCTG-TT---AAAACGAATTCTCAAA--TC-AAGCGGCAGCT-TCGAC-TAAGACTCGATCAATGCTATCAAGGATGT-------GTAT-TTGA-ACTCTAAAAACTA-A--AG--CA-----------G--TTAAA--------------A--------------AAG--TAA--TTTATAGGATATTTTT-AAAAGCCAA-AGAAAA-AAAA-TTGGAAGAGAAAAATCATTT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-GAAGCTGTAAG-CCCG-TCGGAC--TTTTTTTCT--TTGA
gi|40 : tga--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAa
gi|41 : cg-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|5 : cgaagacgAAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTT-TC--TTTCT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATA-GCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-T-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAA-G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GT---AT-A--A-CCCGAA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTA-A---CGATGGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-TAATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATC-T---T-ATCA-T-TCTGACGCTTGACTTCTG-TCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-G-TATTTTT-AAAAGCCAA-AG-AAA-AAAACTTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGC--TAA--CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|6 : AAAATCT-TT-GAA--CAG-ACCTAAGCCC-GGG-CTTTTTCTA--TTTTTTAATC---TAAGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-A---AA-TCAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAA-TAAGCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTT-A-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-AG-----G--------GGGTGGG-------------AGT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGT-AAA---------TT--CA-T--GGT-AAA---GT---AT-A--ATCCTGAA--TAATCC-AG-T-GTTCT-G-------TC-T---CTCCAC-ACT--G---TGATCGCT-C---T-AAG---T-ATTCAGAAC-ACT-GAGA-TGATCC-ATCTGA-GGG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAAATT-ATCAT---T-AACA-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTATA-GATATTTTT-AAAAAGCAACAG-AAAGAGGA-TTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-C--TAA---CCG-TCGGAC--CTTTTTTTC--TT
gi|7 : ttgAAAATCT-TT-GAA--CAG-ACCTAAGCCC-GGG-CTTTTTCTA--TTTTTTAATC---TAAGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-A---AA-TCAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAA-TAAGCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTT-A-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-AG-----G--------GGGTGGG-------------AGT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGT-AAA---------TT--CA-T--GGT-AAA---GT---AT-A--ATCCTGAA--TAATCC-AG-T-GTTCT-G-------TC-T---CTCCAC-ACT--G---TGATCGCT-C---T-AAG---T-ATTCAGAAC-ACT-GAGA-TGATCC-ATCTGA-GGG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAAATT-ATCAT---T-AACA-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTATA-GATATTTTT-AAAAAGCAACAG-AAAGAGGA-TTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-C--TAA---CCG-TCGGAC--CTTTTTTTC--TTtga
gi|8 : ttgTT-TT-GAA-GC-G-ACCTA-GCCCTGGG--TTTTTCTAATTTTTT-AATCCT--ATGCC--G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAA--G-TATTA--CA-A---AA-TCAA-A-TGCGTTTAT-GGCCTATAT-TCAGG----AGTAAATTC--A--TCAA-CA-TATTTGCAATACA-TCATA-----AATAAGCATT-TC-CCAT--ATTCT---ACC--------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-C--TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GG--G---GGGGGGGGG-GGGGGGGGGGGAGT-AG--T--TTCTTG-T----C-TAA---CTT---T---GTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--T-CAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---G----AT-A--A-CCCGAA--TAATCC-AGCTCGTTCTAG-------TC---G-CTG--C-ACTACA---CGATGGC--CAT---AAG---TCATAGAGAA--AC--GAGAGTGATCCCATC-GA-GGG-----CT-G-AA-TT-ATTCGAG-T---------TAGG-G-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CA-CG-AAAA-TT-ATCAT---T-G-AA-TATCTGACGCTTGACT-CTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAA-GATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT--A--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-A--AGA-AAAA-TTGGAAGAG-AAAATCA--T--T-TAACATTTTT-A-TGGAAAATATTT--T-ATTTC-GAAG-A-AGC--TAAGCCCCG-TCGGAC--TTTTTTCT---TTGAtga
gi|9 : tgaaaAATTTT-TT-GAT-GCAG-ATCTAAGCCCTGGG-CTTTTTCTAG-TTTTT-AATCC--TAAGCCT-A-A-AAACAA-TTTT-GCCAAGTCCAAG-TTCTAAA-G-TATAA-ACA-T---AA-CCAA-AATGC-TGTATAGACCTTTTT-CCAGG----AGTAACCTCTCA--GCAG-CAGTATTTGCAGTACA-TCACATT-------AGCATTCTCGCCAT--ATTCT---ACGT-------A-AGGAAATT---C-ATTAACCCAA-GAGGA-TAAAAA-G---TTCC-ATG----TC-CACATTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A---------A--G---GGGGT---T-GG---------AGT-AG--T--TTTTAGCT----T-TAA--ACTTAAATC-TGTCTCAG--ACTTGTCA--TCTT-CT-TGATGG-G--CT--GCT----------CTCTG--TT--TTCAT----GTATTA-ATTGT-AAA---------AT--TA-T--GAT-TAA---GT---AT-A--A-CTCGAA--AAATTC-AG-TCGTTGTAT-------TC-C-G-CC---C-ACTA-T---CGATTGTT-CA--C-AAG---TCCAAAAGAAC-TG--GAGA-CAATCG-ATC-GA-GGG-----CTTG-AA-TT-ATTCAAG-T---------CAGG-T-----TAAGTAAA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG-AAAAATT-ATCATTTAT-ATCA-T-TCTGACGCTTGACTTCCGTTTTG-TT---AAAACA-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-GAAGA----ATCAAT-CGATCAAGG---------------------------AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATCTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTGCAGAAA-A-AGC--TAAG-CCTG-TCGGAC--TTTTTTGT---TTGAa
blockSeqs : . T A G . AT T CTAT CA T T A T T A C TA ACGT A T G . TCTG GT . C T G GA ACCCCCACCAC T CTTT A A A ATA A ATAT A T . C ATTAATGAG A C ATACT TT AT CAC C CTGATGAG GGGGGGGGGGGG A . AA ATAT C CA AAA C GG AT T C A A GT TT GGTGTACCAT AG TG TGAC TAT . . TCAGAACAA . C TG AT TAA AAA G TT T AT T C GCTGATGT A G A CCA A ATTT N A TAT TTT N ACTG A ATCCATCT . ACTCG . T A T TATCTCTGC T TAGAC A A . A T AT . A A TTA A T A T TAA A A TC A G G A TCGA G GTACCCG A G AA TA AC A TATATATCTCTGCTAAAACTAAGCAGTTAAA GT A TC G A C A G G C T AA C T A T T TA A . A TG GC T T C
blockSeqs : . . . . . G T CCT C . . . . . . C AA TA . . . . . . . . . A . ACCC . TT . . . . . . A . . . . A . . . . . . GGGTGG TGGG . . . T . G AAA . T . . . G . A . . . . . . . . . . . A GC A TT . . T A . . GT . . . CCA C AT G G TTC . T CGG G ATCCATCT . . . . A . TATCTCTGC . TAGAC A . . A T . . . . . T . . . TAA . . . . . . A TTGA . . A G A A G . AACTTAAAA GT . . . . C . G G . . . A T . . . TA . . . . G . . T
blockSeqs : . . . . . G T CTT C . . . . . . . AA A . . . . . . . . . A . ACAC . C . . . . . . . . . . . . . . . . . . GAAGG TGGG . . . . . G . . . . . . A . . . . . . . . . . . . . . GT . A . . . . . . N . . . G . AA C . NN . T AAC . ATCCCATC . . . . A . . . . . . . A . . . . . . G . . . . . . . . . . . TCGA . . . . A . . . GTTAAAA . . . . . . . . G . . . A . . . . . . . . . G . . C
blockSeqs : . . . . . T T CTT C . . . . . . . AA T . . . . . . . . . A . ACCC . T . . . . . . . . . . . . . . . . . . GAAGG CAT . . . . . . . . . . . . A . . . . . . . . . . . . . . T . . . . . . . . G . . . . . CA T . TT . G ACT . ATCCATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTGA . . . . A . . . GTTAAA . . . . . . . . A . . . . . . . . . . . . . G . . C
blockSeqs : . . . . . G . CT C . . . . . . . AA T . . . . . . . . . A . ACCC . C . . . . . . . . . . . . . . . . . . GAAG TGG . . . . . . . . . . . . G . . . . . . . . . . . . . . C . . . . . . . . T . . . . . N G . TT . T ACT . ATCCATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCGA . . . . A . . . GTTAAA . . . . . . . . A . . . . . . . . . . . . . G . . C
blockSeqs : . . . . . G . CT C . . . . . . . TT A . . . . . . . . . A . TACC . T . . . . . . . . . . . . . . . . . . GAG TGG . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . T . . . . . A C . TT . T AG . ATCAATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTGA . . . . A . . . GTTAAA . . . . . . . . A . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . AT C . . . . . . . AA T . . . . . . . . . A . ACCC . T . . . . . . . . . . . . . . . . . . GGG TGG . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . G . . . . . A A . TT . T AC . ATCCATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCGA . . . . A . . . GTTGAA . . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . CT C . . . . . . . TT A . . . . . . . . . A . TAAA . T . . . . . . . . . . . . . . . . . . AG TGG . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . T . . . . . T C . T . G AT . ATCCATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCA . . . . A . . . GTTAAA . . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . CT C . . . . . . . TT A . . . . . . . . . . . TAAA . C . . . . . . . . . . . . . . . . . . G TGG . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . G . . . . . A C . T . G AG . ATCCATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCA . . . . A . . . GTTAAA . . . . . . . . G . . . . . . . . . . . . . .
blockSeqs : . . . . . . . CT C . . . . . . . TT A . . . . . . . . . . . ACGT . C . . . . . . . . . . . . . . . . . . G GG . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . A C . C . G AC . ATCCATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . . GTTAAA . . . . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . . . CT C . . . . . . . AA A . . . . . . . . . . . CCC . T . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . T . . . . . T C . T . G TG . ATCGATC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . . GTAAA . . . . . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . CT T . . . . . . . AA A . . . . . . . . . . . ACC . C . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . G C . C . G AC . ATCATT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . A . . . GTAAA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . TA A . . . . . . . . C . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . G . . . . . T C . T . G CG . CCATT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTTAA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . AA T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . G . . . . . A G . T . T CG . TT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . G . . . . . T G . T . G CG . GT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . G . . . . . A G . T . T TG . G . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . A C . T . T CG . G . . . . . . . . .
blockSeqs : . . . . G . . . . . G C . T . T AC . G . . . . . . .
blockSeqs : . . T . . . . . G G . T . T AC . G . . . . . . .
blockSeqs : . . . . T T . C . T AC . G . . . . . . .
blockSeqs : . . A TG . G . . . . . . .
blockSeqs : . G . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons : CT** NA* GAG********** TGG********** ** ** T*** ** ** ** GTTAAA****************************************** ** C**
originalCons : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTT-AATCCT-TAAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATCGCT-CAT-T-AAG---TCATAGAGAAC-AC--GAGA-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
finalCons : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTT-AATCCT--AAGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AGGAG----------GGGGTGGGTGG----------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCGAA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACTA-A---CGATCGCT-CAT---AAG---TCATAGAGAAC-AC--GAGA-CGATCC-ATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CAGTTAAA------------------------------------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GACTCTATCAGGTAAGGAAAGTTAAACGTACTTTTGATATAAA
Unaligned ( gi|32 ): GGTATATAACATACGATGTGGATGTGAAATACACATGTA
Alignments
lowQualScore : 11 1 11111111111111 111111111 3333333333333 2222222222222 1 1111111111 11111 333333333 111111111 11111 1111 222222222222222222222222222222222222222222222222 11 111
lowQualScore : 2 2 2 2 2 33 2 2 33 5 33 22 2 2 2 2 0 2 2 5 333 55555 2 2 2 2 6666 33 2 0 3 3 3 33 77777777777777 2 55555 2 2 2 555 2 6666 5 2 2 2 000000000 5 2 66666 33 33 444 2 0000000000000 1111111111111 2 33 33 0 8888 2 99 888 2 55 33 2 2 2 2 55 33 0000000000 33 33 5555 444 2 2 999999999 33 2 55 88 666 999 2 33 4 2 22 2 2 0 88888888 1 1 1 999 6 1 66666 2 3 66666666 22 1 00000 3 111111111 1 33333 1 1 4 1 000000000 2 11111 7 2 33 7 4 33 2 2 4 444 7 2 2 2 888 2 2 33 2 2 5 5 2222 2 8888888 5 5 22 55 88 55 444444444444444444444444444444444444444444444444 77 2 33 2 2 5 2 5 4 2 2 33 8 5 2 5 2 77 2 3 3 55 99 4 00 444
lowQualScore : . . . . . .. . . .. . .. .. . . . . . . . . ... ..... . . . . .... .. . . . . . .. .............. . ..... . . . ... . .... . . . . ......... . . ..... .. .. ... . ............. ............. . .. .. . .... . .. ... . .. .. . . . . .. .. .......... .. .. .... ... . . ......... .. . .. .. ... ... . .. . . .. . . . ........ . . . ... . . ..... . . ........ .. . ..... . ......... . ..... . . . . ......... . ..... . . .. . . .. . . . ... . . . . ... . . .. . . . . .... . ....... . . .. .. .. .. ................................................ .. . .. . . . . . . . . .. . . . . . .. . . . .. .. . .. ...
lowQualScore : 5 5 5 5 4 44 5 5 44 0 44 99 5 5 7 7 5 7 7 3 333 33333 7 7 7 9 1111 99 9 4 1 1 4 99 11111111111111 9 99999 9 9 9 000 9 1111 7 9 9 9 777777777 3 7 77777 77 77 777 7 5555555555555 3333333333333 7 77 77 3 3333 7 00 888 5 99 44 5 5 5 5 99 44 9999999999 44 44 3333 444 5 5 444444444 22 4 66 11 555 777 2 11 2 1 99 0 0 6 11111111 9 9 9 000 0 9 77777 2 8 55555555 55 4 99999 0 999999999 4 44444 3 3 0 3 777777777 2 11111 1 4 22 1 7 22 4 4 7 111 1 4 4 5 888 5 5 44 5 5 0 0 2222 5 1111111 0 0 77 99 44 99 777777777777777777777777777777777777777777777777 99 9 99 9 9 7 9 7 0 9 9 99 6 7 9 7 9 99 9 3 3 55 00 4 66 666
consensus : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTT-T-AATCC-T-A--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCG-AA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACT-A-A---CGATCGCT-C--A--T--AA--GTCATAGAGAAC-AC--GAGA-CGAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
Reference ( family-3562 ) : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTT-T-AATCC-T-A--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATNA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GA--G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---GT---AT-A--A-CCCG-AA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACT-A-A---CGATCGCT-C--A--T--AA--GTCATAGAGAAC-AC--GAGA-CGAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|1 : AAATTTTCTT-GAA-GCAG-ACCTAAGCCCTGGGTCTTTTTCTA--TTTT-TTAATC--T-A--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTTTACA-A---AT-CAAA-AATGC-TGTATAGGCCTATTTTCCAGG----AGTAACCTCTCA--TCAAACAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATC-ACCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTT-CGCC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------------AGGGTGGGTGGG---------AGT-AAGTT--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TT-CG--TT--TTCAT----G---TAGATTGTAAAA---------ATTATA-T--GGT-CAA---GT---AT-A--A-CCCG-AA--TAATCC-AG--CGTTCTAG-------TC-C-G-TT---CAACT-A-A---CGATATCT-CA-A--T--AA--GTCATAGAGAAC-AC--GAGA-TGAT-CCATC-GAGGGG-----CTTGAAA-TT-ATTCGAG-T---------TAGG-T-----TAAGT-AAAGGA-ACATTTTGC-TTGA--CTTTGTAAACCAACG-AAAAATTAATCAT---T-ATCA-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGACCATATATATCTCTG--CT-AA--------------AACTAAGCAGTTAAAAAG--T-A--TTTATA-GATATTTT---AAAGCCAA-AA-GAA-AAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-ATTGGAAAATA-TT--T-ATTTCAGAAAGG-AGC--TAAG-CCCG--AGGACGGTTATTTTTCCTTTGA
gi|10 : gttgaAAATTTT-TT-GAA-GCAGGACCTA-GCCCTGGG-CTTTT-CTA--TTTT-TTAATCC-T-A--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTA-AAA-ACGTGA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AATAACCTCTCA----AG-CAGTATTTGCAATACA-TCATATT-GAAGTAAGCATTCTCGCCAT--ATTCT---ACCC-------T-AGGAAATT---C-ATCAACTCAA-GAGGA-TAAAAT-G---TTCT-GTA----TC-CACTTTT-C-C--TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----G--------GGGTAGG-------------AGT-AA--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCC--TCAT-CT-TCAT-A-GA-CC--GCT----------TTCCG--TT--TTCGT----G---TA-ATTGT-AAA---------AT--TA-T--GAT-TAATAAGTTT-AT-A--A-CNNN-NN--NNNNNN-NN-NNNNNNNNN-------NN-N-N-NN---N-NNN-N-N---NNNNNNNN-N--N--N--NN--NNNNNNNNNNNC-AG--GAGG-CGAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAC-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATG-ATCAT---T-ATCA-T-TCTGACGCTTGACCTCTGTTCTG-TT---AAAATG-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCAAGGATGTGTACCCGGTAT-TTCA-ATTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCTAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAa
gi|11 : gttgaAAATTTT-TT-GA--GCAG-ATCTAAGCCCTGGG-CTTTT-CTA--TTTT-TTAATCC-T-A--AGCCC-G-A-AAACTT-TTTT-GTAAAGTCCAAG-TTGTAAAAG-TATAA-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATT--CCAGG----AGTAACCTCTCA--TCAA-CAGTATT-GCAATAC--TCATATT-GAAATAAGCATTCTCGCCAT--ATTCT----CCC-------A-AGGAA-TT---T-ATCAACCCAA-GAGGA-TAAA---G---TTCC-GTA----TC-CACTTTT-C-CCCTTTCA---------TA-TT-TCAA------T--CTTTC--TTCA---A-AG-----GG--GTGGGGGGGGGGT-GGG--------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTTTCAG--ACTTGTTG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------A---TA-T--GGT-CAA---GTA--AT-A--A-CCCG-AA--TAATCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACT-A-A---CGATGGCT-C--A--T--A----TCATAGAGAAC-AC--GAGA-TGAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAGTT---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATCAT---TAATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GTAGCT-TCGAC-T-AGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-ATCTCTATA-AATATTTTTAAAAAGCCAA-AG-AAA-AA-A-TTGGAAGAGAAAATTCA-TTAAT-TAA-A-TTTTAA-TGGAAAATA-TT--T-ATTTCAGAAA-G-
gi|12 : ttgaAAATTTT-TT-GAAAGCA--ACCTAAGCCCTG---CCTTTTCAA--TTTT---AATCCCT-A--AGCCCAG-G-AAACTT-ATT--GCCAA-TCCAAG-TTTCTAA-A-TAAAA-ACATA---AA-CCAA-AATGC-TGTAGAG-CCTATT--CCAG-----AGTAAC-TCTCAGTCCAA-TAGTCATTGCAATCCACTCATAT--GAAATAAGCATTCT-GCCATGAATTCT------C-------A-A----------------ACCCAA-GAG----AAAAA-A---TTCC-GTA----TC-CACTTTT-C-CC-TTTCA---------TA-TT--CAAA-----T--CTTTC--TTCA---ACAG-----GA--G---GATGCGA----------------------T--TCCTTGCTT---C-TAA--ACTT---TC--GTCTCAA--ATTTGTCG--TCAT-CT-TGATAA-G--CC---CT----------TTCCG--TTTGTTCA---------TA-ATTGT--AA---------AT--TACT--GGT-CAA---GTAAAAT-ATTA-CCC--AA--TAATTC-AG-TC-TTCTAT-------TCACGG-CT---C-ACT-A-A---CGATCACT-C--A--T--AA---TCATAGA-AAC-AT--GAGA-TA---CCATT-GA-GGG-----CTTG-AA-TTAATTCGAG-T---------TAGT-T-----T-AGT-AA--GG-ACA-TTTGC-TT-A--CTTTGTAAA-CAACG-AAAAATG-TTCAT----------T-TCTGACGC-TGACTTCTGTTCT--TT---AAAACG-ATTCCC-AATCTC-AAGC-GCACTC-TCGAC-TAA-AC----TCAAG-CTATCAAGGA----------GTAT-TTCA-GTTCT-AAACTT--AACAG--CA-----------AACTTAAA--------------A--------------AAG--T-G---TTATA-GATA-TTTT-AAAAGCC-A-AG-AAA-AAGA-TTGGAAGAG-AAAATCG-TT--TCTAACA-TTTT-ATTGAAAAATA-TT--TAATTTCAGAAA-G-AGC--TAAG-
gi|13 : tgaaCCTGGG-CTTTTTCTAG-TTTT-T-AATCC-T-ATAAGCCC-G-A-AAACTA-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ACA-T---AA-CCAA-AATGC-TGCATAGACCTATTT-CCAGGTCTGAGTAACCTTTCA--TCAG-CAGTATTTGCAATACA-TCACATT-------AGCATTCTTGCCAT--ATTCT---ACCCCCACCACA-AGCCAATT---C-ATCAACCCAA-GAGGA-TAAAAA-G---TTCT-GTG----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG---------G---GGGGTG----GG---------AGT-AG--T--TTTTTGCT----C-TAA--ATATAAATC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGATGG-G--CC--GCT----------TTCCG--TT--TTCAT----A---TA-ATTGT-AAA---------AT--TA-T--GGTATAA---GT---AT-A--A-CCTG-AA--TAATCC-AG-TTGTTGTAT-------TC-C-G-CC---C-ACT-A-T---CGATTGCT-C--A--C--AA--GTCGGAAGGAAC-AG--GAGA-CGAT-CAATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------GATG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG--AATATG-ATAAT---T-ATCA-T-TCTGACGCTTGACTTCCGTTCTG-TT---GAAGCG-ATTCTC-AA--TC-AAGT-GCAGCT-TTGAC-TAAGACTCA---------ATCAAGGATGC-------GTAT-TTCA-GTTCT-AAAACT--A--AG--CA-----------G--TT-
gi|14 : TTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAAGG---GGGGTGGGT-GGG--------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GT---AT-A--A-CCCG-AA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACT-A-A---CGATGGCT-C--A--TT-AA--GTCATAGAGAAC-AC--GAGAATAAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAAAT-ATCAT---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AA-A-CTTGAAGAGAAAAATCA-TT--T-TAACATTTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-
gi|15 : T--ATTCT---ACAC-------ATAGAAAATTCTTT-A-CAATCAAA-G-GAA-TAAAAA-AATATTGCAGTAATATTC-TACGCCC-C-CT-TTTCAATTAATGAGTA-TTCTCAAAATACTT--ATTTCATTTCACACA-GGCTGATGA--G---GGAGAGTAC-AT---------AGT-AG--TAATATTTGCTATATC-TAACAACTC----C-TGTTTAAAT-ACA-GTCG--TCAT-CT-T--T-G-GGTCT--GCTGGTGTACCATTTCTGAGTC--TTCGTTGACG---TA-ATAGT-GAATCAGAACAAAT--TC-T--GATGC------T---ATGA--A-TCTG-AGATTAATCCTAC-TTGTTATAGCTGATGTTC-C-GACT---C-CCT-A-AT--CGATCGCT-C--A--T--AA--CGGAT-GAAAAC-TG--GAGA-CG------TT-TA-GGGACTCGCCTG-A---T-ATT-GAG-T---------TAGG-T-----TAAGT-AA---G-ACAATTTGCTTTGAATCTTCGCAAA-CAACGAAAAAAAA-ATCAT---T-ATCA-----TGA-GC-TGACTT
gi|16 : acatcacattagttttatctttTTG-TA-AT-ATTTTAG-T---------TA-----------AGT-AA--GG-ACATTTTAC-TTGA--CTTCACAAA-CAACG-AAAAATG-ATCAT---TTATCA-T-TCTGACGCTTGATTTCCACTCTC-TT---AAAACA-ATTTTC-AA--TC-AAGC-GCAGCT-TCAAC-TAAGACTC-AT---T-CGATCATGGATGT-------GTAT-TTTG-GTCCT-AAAAAT--A--AG--CA-----------G--TT-GA--------------A--------------AAG--T-A--TTTATA-AATATTTTT-AGAAGACAA-AG-AAA-AAGA-TCTGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAgg
gi|17 : taaactatCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATG-ATCAT---T--------TCTGACGTTTGACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGAC----TCAAT-CTATCA--TATTC-------ACAT-TTCA-GTTCT-AAAACTTAA--AG--CA-----------G--T
gi|18 : AAATTTT-TTTGAA-GCAG-ACCTGAGCCCTGGG-CTTTTTCTAG-TTTT-T-AATCA-T-A--AGCCC-G-A-AAGATAATTTT-GCCAAGTCCAAG-TTGTAAA-G-TATAA-ATA-T---AA-CCAA-AATGC-TGTATAGGCCTATTT-CAAAG----AGTAACCTCTCA--TCAG-C
gi|19 : gttgaCTT---TC-TGTTTTAG--ACTTGTTGATCCATTCTCTGAT-GAG--ACTTGCT----------TTCCG--TT--TTCGT----G---TA----GT-AAA---------AT--TA-TTGGATGTAA---GT---AT-A--A--CCA-AA--TAATCC-A--TTGTTATAT-------TC-C-G-
gi|2 : gAAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTCTA--TTTTTT-AATCC-T-A--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AA-TCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATAAGCATTCTCGCCAT--AATCT---ACCC-------A-AGGAAATT---T-ATCACCCCAA-GAGGA-TAAAAA-G---TTCC-ATA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-A--------------AGGGTGGGT-GG---------AGTAAG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-TA-GGT-CAA---GT---AT-A--A-CCCG-AA--TAATCC-AG-TCGTTCTAG-------TC-C-G-TT---CAACT-A-A---CGATATCT-CATA--T--AA--GTCATAGAGAAC-AC--GAGA-TGAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GGAACATTTTGCTTTGA----TTGTAAA-CAACG-AAAAATTAATCAT---T-ATCA-T-TCTGACGCTTTACTTCTGTTCTG-TT---AAAACG-ATTCTC-AA--TCAAAGC-GCAGCTGTCGAC-TAAGACTCGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACC--AG-AGA-CATATATATCTCTG--CT-AAAACTAAGCAGTTAAA--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-AG-AAA-AAAA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-G-AGC--TAAG-CCCG-ACGGAC--TTTTTTCT---TTGA
gi|20 : gttgaAA---------AT--TG-T--AAT-GGA---GT---CT-A--A-ACCG-AA--TAATCC-AG-TCGTTATAT-------TC-C-G-CT---C-CCT-A-T---CGATCGC--G--A--C---A--GTCGGAGAGAAC-CG--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Ta
gi|21 : TAT-------TC-C-G-CT---CCATT-G-ATTTCTATCGCT-C--A--T--AA--GTCGGAGAGAAC--CGGGAGA-CG---------GA-GGG-----TTAG-AATTT-ATTCGAG-T---------
gi|22 : gacgttaactacgaccggggtatcatataCCTAAGCCCTGGG-CCTTTTCTAG-TTTT-T-AATCC-T-A--A-CCC-GTATAAATAT-CATT-GCCAA-TCCAAGTTTGTTAA-A-TA-AA-ACA-T---AA--CAA-AATGC---TATAGGTC
gi|23 : -CCTA-AA--TAACCC-AG-TCGTTAT---------TC-C-G-CT---C-ACG-A-G---C-----TT-C--A--T--GA--GTCGGAGAGAAC-CG--GAGA-CGGT-------GG-AGG-----CTTG-AA-TT-ATTCGGG-T---------TAct
gi|24 : tC-AG-TCGTTATAT-------TC-C-T-CT---C-TCT-G-T---CGATCGCTAC--ATTT--AATTTTCAGAGAGAA--ACTGGAGA-TG
gi|25 : CC-A-A---CGATCGCTGC--T--TTCAA--GTCAGAGAAAAC-CG--GAGA-CA---------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Tgagggtt
gi|26 : AAATTTT-TT--AA-GCAA-ACGTAAGCCATGGG-CTTTTTCTA--GTTT-T--ATTC-T-A--AACCC-G-A-AA
gi|27 : ttGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|28 : attccgcttactccgatggagaaaatcggagttgagtat---CGATCGCT-C--A--T--AA--TTCAGAGAGAAC-TG--GAGA-TG---------GA-GGG-----CTTG-AA-TT-ATTCG
gi|29 : ctctgtT-A--A-CCCG-AA--TATTCC-AG-TCACTATAGT------TC-C-G-CT---C-CCT-A-T---TGATC
gi|3 : AAATTTT-T--GAA-GCAG-ACCTAAGCCCTGGG-CTTTTTTCT--TTTC-T-AATCC-TTA--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AAACCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATTTGAAATA-GCATTCTCGC-AT--ATTCT---ACCC-------A-GGAAAATT---T-ATCAACCCAAAGAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTTTC-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAAGG---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GG---AT-A--A-CCCGAAA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACTAA-A---CGATGGCT-C--AT-T--AA--GTCATA-AGAACAAC--GAGA-TAAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGGTT-----T-AGT-AA--GG-ACATTTTGC--TGA--CTTTGTAAA-CAACG-AAAAATT-ATC-T---T-ATCA-T-TCTGACGCTTGACTTCTGTTCTGTTT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT--AAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-G-TATTTTT-AAAAGCCAA-AG-AAA-AAAC-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGC--TAAG-CCCGTTCGGACT-TTTTTTTTC--TTGA
gi|31 : gttgg--GTCGGAGAGAAC-CG--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------Ta
gi|33 : AAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CT
gi|34 : gttgaA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGA-T-----a
gi|35 : ggagtcgagt--GAGA-CGG--------GA-GGG-----CTTG-GA-TT-ATTCTAG-T---------TAa
gi|36 : aaccg--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|37 : tcg--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAG
gi|38 : cgAAATTTT-TT-GAA-ACAG-ACCTAAGCC
gi|39 : gggttga--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TA
gi|4 : cgAAAATTT-TT-GAA-GCAG-ACCTAAGCCCAGGG-CTTTTTCTA--TTTT---AATCC-T-A--A-CCC-G-A-AAACTT-TTTTTGCCAGTTCCAAG-TTGTAAA-G-TATTT-ATA-A---AA-TCAATAATGC-TGT-TAGGCCTATTT-CCCAG----AGTAACCCC--A--TCAA-CAGTATT-GCAATACA-TCATATT-GAAATAAGCATCCTCGCCAT--ATTCT---TACC-------A-AGGAAATT---TTATCAACCCAA-GAGGAATAAAAAAG---TTCC-ATA----TC-CACTTTT-C-CC-TTTCA---------TA-TT-TCAAA-----TTTCTTTC--TTCA---A-AG-----G-------------GGT-GG---------AGT-AG--T--TTCTTGCT----CCTAA--ACTT---TCCTGTCTCAGGGACTTGTCG--TCAT-CT-TGAT-G----CC--GCT----------TTCCG--TT--TTCAT----G---TA-AT-GT-AAA---------AT--TC-A--GGT-CAAA--GT---AT-A----CCCG-A---TA-TCC-AG-TCGTTCTAG-------TC-C-G-CT---C-ACT-A-A---CGATGGCT-C--A--T--AA---CCATAGA-AAC-AC--GAGA-TGAT-C-ATT-GA-GGG-----CT-G-AA-TT-ATTCGAG-T---------TGGG-T-----T-AGG-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAA-T-ATCAT---TGATCATT-TCTGA-GCTTGAC-TCTGTTCTG-TT---AAAACGAATTCTCAAA--TC-AAGCGGCAGCT-TCGAC-TAAGACTCGATCAATGCTATCAAGGATGT-------GTAT-TTGA-ACTCTAAAAACTA-A--AG--CA-----------G--TTAAA--------------A--------------AAG--TAA--TTTATAGGATATTTTT-AAAAGCCAA-AGAAAA-AAAA-TTGGAAGAGAAAAATCATTT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTTCAGAAA-GAAGCTGTAAG-CCCG-TCGGAC--TTTTTTTCT--TTGA
gi|40 : tga--GAGA-CGG--------GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAa
gi|41 : cg-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------T
gi|5 : cgaagacgAAATTTT-TT-GAA-GCAG-ACCTAAGCCCTGGG-CTTTTT-TC--TTTC-T-AATCC-TTA--AGCCC-G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAAA-G-TATTT-ACA-A---AA-CCAA-AATGC-TGTATAGGCCTATTT-CCAGG----AGTAACCTCTCA--TCAA-CAGTATTTGCAATACA-TCATATT-GAAATA-GCATTCTCGCCAT--ATTCT---ACCC-------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-T-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GAA-G---GGGGTGGGT-GG---------AGT-AG--T--TTCTTGCT----C-TAA--ACTT---TC-TGTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--TTCAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-TAA---GT---AT-A--A-CCCG-AA--TAATCC-AG-ACGTTCTAG-------TC-C-G-TT---C-ACT-A-A---CGATGGCT-C--A--TT-AA--GTCATAGAGAAC-AC--GAGA-TAAT-CCATC-GA-GGG-----CTTG-AA-TT-ATTCGAG-T---------TAGG-T-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-CAACG-AAAAATT-ATC-T---T-ATCA-T-TCTGACGCTTGACTTCTGT-CTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTTGATCAAT-CTATCAAGGATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-G-TATTTTT-AAAAGCCAA-AG-AAA-AAAACTTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-CT--T-ATTTCAGAAA-G-AGC--TAA--CCCG-TCGGAC--TTTTTTTTC--TTGA
gi|6 : AAAATCT-TT-GAA--CAG-ACCTAAGCCC-GGG-CTTTTTCTA--TTTT-TTAATC--T-A--AGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-A---AA-TCAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAA-TAAGCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTT-A-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-AG-----G--------GGGTGGG-------------AGT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGT-AAA---------TT--CA-T--GGT-AAA---GT---AT-A--ATCCTG-AA--TAATCC-AG-T-GTTCT-G-------TC-T---CTCCAC-ACT---G---TGATCGCT-C-----T--AA--GT-ATTCAGAAC-ACT-GAGA-TGAT-CCATCTGA-GGG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAAATT-ATCAT---T-AACA-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTATA-GATATTTTT-AAAAAGCAACAG-AAAGAGGA-TTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-C--TAA---CCG-TCGGAC--CTTTTTTTC--TT
gi|7 : ttgAAAATCT-TT-GAA--CAG-ACCTAAGCCC-GGG-CTTTTTCTA--TTTT-TTAATC--T-A--AGCC----G-AAACTT-TTTT-GCCACATCCA---TTGTAAA-GCTATAA-ACG-A---AA-TCAA-AATGC-TGTTTAGGC--ATTT-C-AGG----AGTA-CCTTTCA--TCAA--AGT-TTTGCAATACA-TCATATT-GAA-TAAGCATTCTCTGCAT---TTCTTAAA----------A-AGGAAATT---C-ATCAACCCA--GAGGA-TAAAAT-G---TTCC-GTA----TCACATTTTT-A-CC-TTTCA---------TAATT-TCAAA-----T--CTTTC--T-CA---A-AG-----G--------GGGTGGG-------------AGT-AG--T--T-CTTG-T----C-TAAG-ACTT---TC-TGTCTCAG--ACTTGTCG--TC----T-AGATAG-G--CC--GCT----------TTCCG--TT--TTCAT----G---TT-ATTGT-AAA---------TT--CA-T--GGT-AAA---GT---AT-A--ATCCTG-AA--TAATCC-AG-T-GTTCT-G-------TC-T---CTCCAC-ACT---G---TGATCGCT-C-----T--AA--GT-ATTCAGAAC-ACT-GAGA-TGAT-CCATCTGA-GGG-----CTTG-AA-TTAATTCGAG-TTATCTCTGCTAGG-TTAGACT-AGT-AA--GGAACATTTTGC-TTGA--C--TGT-AA-CAACG-AAAAATT-ATCAT---T-AACA-T-TC-GACGCTTGACTTCTGTTTTG-TTTAAAAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGACAGAAGATT---TCAAT-CT-TC-AGGATGT-------GTATATTCAGGTTCT--AAACT--A--AG--CA-----------G---T-AA--------------A--------------AAGGTT-A--ATTATA-GATATTTTT-AAAAAGCAACAG-AAAGAGGA-TTGGGAGAGAAAAATCA-TT--TAAAACA-TTTT-A-TGG-AAATA-TTTAT-ATTTCA-AAA-G-A-C--TAA---CCG-TCGGAC--CTTTTTTTC--TTtga
gi|8 : ttgTT-TT-GAA-GC-G-ACCTA-GCCCTGGG--TTTTTCTAATTTTT-T-AATCC-T-A--TGCC--G-A-AAACTT-TTTT-GCCAAGTCCAAG-TTGTAA--G-TATTA--CA-A---AA-TCAA-A-TGCGTTTAT-GGCCTATAT-TCAGG----AGTAAATTC--A--TCAA-CA-TATTTGCAATACA-TCATA-----AATAAGCATT-TC-CCAT--ATTCT---ACC--------A-AGGAAATT---T-ATCAACCCAA-GAGGA-TAAAAA-G---TTCC-GTA----TC-CACTTTT-C-C--TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A-AG-----GG--G---GGGGGGGGG-GGGGGGGGGGGAGT-AG--T--TTCTTG-T----C-TAA---CTT---T---GTCTCAG--ACTTGTCG--TCAT-CT-TGAT-G-G--CC--GCT----------TTCCG--TT--T-CAT----G---TA-ATTGT-AAA---------AT--TA-T--GGT-CAA---G----AT-A--A-CCCG-AA--TAATCC-AGCTCGTTCTAG-------T--C-G-CTG--C-ACT-ACA---CGATGGC--C--A--T--AA--GTCATAGAGAA--AC--GAGAGTGATCCCATC-GA-GGG-----C-TG-AA-TT-ATTCGAG-T---------TAGG-G-----T-AGT-AA--GG-ACATTTTGC-TTGA--CTTTGTAAA-C-ACG--AAAATT-ATCAT---T-G-AA-TATCTGACGCTTGAC-TCTGTTCTG-TT---AAAACG-ATTCTC-AA--TC-AAGC-GCAGCT-TCGAC-TAAGACTCGATCAAT-CTATCAA-GATGT-------GTAT-TTCA-GCTCT-AAAACT--A--AG--CA-----------G--TT--A--------------A--------------AAG--T-A--TTTATA-GATATTTTT-AAAAGCCAA-A--AGA-AAAA-TTGGAAGAG-AAAATCA--T--T-TAACATTTTT-A-TGGAAAATATTT--T-ATTTC-GAAG-A-AGC--TAAGCCCCG-TCGGAC--TTTTTTCT---TTGAtga
gi|9 : tgaaaAATTTT-TT-GAT-GCAG-ATCTAAGCCCTGGG-CTTTTTCTAG-TTTT-T-AATCC-T-A--AGCCT-A-A-AAACAA-TTTT-GCCAAGTCCAAG-TTCTAAA-G-TATAA-ACA-T---AA-CCAA-AATGC-TGTATAGACCTTTTT-CCAGG----AGTAACCTCTCA--GCAG-CAGTATTTGCAGTACA-TCACATT-------AGCATTCTCGCCAT--ATTCT---ACGT-------A-AGGAAATT---C-ATTAACCCAA-GAGGA-TAAAAA-G---TTCC-ATG----TC-CACATTT-C-CC-TTTCA---------TA-TT-TCAAA-----T--CTTTC--TTCA---A---------A--G---GGGGT---T-GG---------AGT-AG--T--TTTTAGCT----T-TAA--ACTTAAATC-TGTCTCAG--ACTTGTCA--TCTT-CT-TGATGG-G--CT--GCT----------CTCTG--TT--TTCAT----GTATTA-ATTGT-AAA---------AT--TA-T--GAT-TAA---GT---AT-A--A-CTCG-AA--AAATTC-AG-TCGTTGTAT-------TC-C-G-CC---C-ACT-A-T---CGATTGTT-C--A--C--AA--GTCCAAAAGAAC-TG--GAGA-CAAT-CGATC-GA-GGG-----CTTG-AA-TT-ATTCAAG-T---------CAGG-T-----TAAGTAAA--GG-ACATTTTGC-TTGA--CTTCGTAAA-CAACG-AAAAATT-ATCATTTAT-ATCA-T-TCTGACGCTTGACTTCCGTTTTG-TT---AAAACA-ATTCTC-AA--TC-AAGT-GCAGCT-TCGAC-GAAGA----ATCAAT-CGATCAAGG---------------------------AAAACT--A--AG--CA-----------G--TT-AA--------------A--------------AAG--T-A--TTTATA-GATATCTTT-AAAAGCCAA-AG-AAA-AAGA-TTGGAAGAGAAAAATCA-TT--T-TAACA-TTTT-A-TGGAAAATA-TT--T-ATTGCAGAAA-A-AGC--TAAG-CCTG-TCGGAC--TTTTTTGT---TTGAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GACTCTATCAGGTAAGGAAAGTTAAACGTACTTTTGATATAAA
Unaligned ( gi|32 ): GGTATATAACATACGATGTGGATGTGAAATACACATGTA