lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 11111 1 1 1 1 111111 1 111 111111 1 99999999999999999999999999999999999999999999999999999999999999999 1 11 777777777 1 1 66666666666666666666666666666666666666666666666666666666666666666666666666666666 2222 777777777777777 2 333 22 1 3333 2222 2222 2222 1 11 1 1 2 3333333333333333333333333333333333333333333333333333333333333 22 1 1 111 1 1 333 4444444444 11 11 555555 1111 000000000000000000000 11 22222 8888888888 22 11 1 444444444444 22 1111 1 111 66666666666666666666 111 1111111 11 22222 22222 1 222222 11 22222222222 22222 2 11
lowQualScore : 6 55555 5 5 5 9 0 9 3 666 999 3 3 3 88888 3 3 5 444444 4 888 2 111 1 5 666666 5 77 7 888 8 4 8 00000000000000000000000000000000000000000000000000000000000000000 6 2 22 55 2 000000000 0 3 33333333333333333333333333333333333333333333333333333333333333333333333333333333 8888 4 111111111111111 3 8 555 00 3 0000 6 1111 9999 3333 8 6 3 1 99 5 6 5 3 4 7777777777777777777777777777777777777777777777777777777777777 4 33 6 5 6 999 3 6 6 3 3 333 6 6666666666 88 66 4 000000 0 7 8888 4 7 88 444444444444444444444 99 2 3 3 55 77777 7777777777 2 3 6 22 4 88 3 7 0 3 222222222222 33 4444 8 1 1 8 444 3 8 6 2 7 11111111111111111111 8 444 8 8888888 88 8 77777 3 6 99 22222 5 0 444 333333 77 6 6 66 3 99 3 99 11111111111 00000 8 0 2 66 6 3
lowQualScore : . ..... . . . . . . . ... ... . . . ..... . . . ...... . ... . ... . . ...... . .. . ... . . . ................................................................. . . .. .. . ......... . . ................................................................................ .... . ............... . . ... .. . .... . .... .... .... . . . . .. . . . . . ............................................................. . .. . . . ... . . . . . ... . .......... .. .. . ...... . . .... . . .. ..................... .. . . . .. ..... .......... . . . .. . .. . . . . ............ .. .... . . . . ... . . . . . .................... . ... . ....... .. . ..... . . .. ..... . . ... ...... .. . . .. . .. . .. ........... ..... . . . .. . .
lowQualScore : 7 88888 0 0 0 4 8 6 3 000 222 2 3 3 33333 9 7 0 444444 0 888 1 777 7 7 444444 7 99 3 333 0 0 0 66666666666666666666666666666666666666666666666666666666666666666 8 2 22 88 2 000000000 0 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888 0000 0 555555555555555 0 5 000 77 3 3333 0 3333 3333 7777 3 0 3 0 33 5 0 5 0 0 0000000000000000000000000000000000000000000000000000000000000 0 00 7 0 0 000 3 7 7 3 7 777 7 0000000000 33 00 0 777777 7 3 0000 7 0 00 333333333333333333333 55 5 0 0 00 00000 5555555555 5 0 7 33 7 33 7 7 5 2 888888888888 88 0000 0 4 2 0 000 2 8 5 5 0 00000000000000000000 8 000 0 0000000 00 0 44444 0 7 22 66666 4 6 666 000000 33 7 7 00 5 22 3 22 11111111111 00000 2 0 0 00 7 7
consensus : CAGGCATGTTTAC--GAAAACTT-CCTAA-GATATGTTCNTAAGAAATTTCT-T--AA-G-ACATA-TCTT-A-----GGAAAATTTTAAGATCATCC-T------AAG---AATATC--TTAAG-GT------GTTT-ATCAA--AGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACGNC-TT--A--------------AGTCATTGTAACA---AAATACGT----A---GACT-TATAAA-----CCATTTCCAGGAATAAGATAGTTCNCACTTTTGCCGTATGATGC--------TAC-ACGCTA-TGATAATTA----------------T--------------TTAGAAGAGTGAGNATCAATTATAATTCTNNCATNATTCAAACAA----TTAAN---ATCAATAAANTTCTCTCNAGGNAGATATTNTCATTTTNATTCCGACCAAAAGATGA-TATT-CGTT---GCTCTTAAATTCTCTT--TAAACAG---AGTTCCATTT-AATCATTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTAAANGAGATTTTTTAAATNTTTTGCAGAGATTTGTAATTACTAAAAACATGTACCATTGTATATCAANATGTTCCGTCGACGCTT-GAG-TTTAATCCTAA--ACTAAATGCA-TTCATTTGTTTTGGCCAGT-TCAANT---AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANAAAAACCCGGNCCAAAACCT-----AATTTTCACACACANCG-ANAGAAAAAAGGGGAAAATTAA----------------GTACGCGTCTNTGCTTATANATTGACGTGTACTCCGTCGGGANCAAATAAATGNNCCAACTTAAGGCTACCCATAAAGGTACATGTACAGCTAGAGCNCCNAATGAAATCAAGTT-AATTATTGTTCACGCA--CTTTNAAAATNTTCAATATCCTGACTTTAGT-CTT------AATTTTC-AACTA--GACTAAAAT-CAGGGNA-TGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCCGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T-C---CGTTTTCGG-C--AAGGAGTGGCGGTNGGGGTGAG------TGAATCTCAC-TATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAGAA-----CTGCCCCGACAACTCC-AGTTNCATACAAT
Reference ( gi|2 ) : CAGGCATGTTTAT--GAAAACTT-CCTAA-GAT-TGTTCATATGAAATTTCT-T--GA-G-ACATA-TCTT-A-----GGAAAATGTTAAGATCATCC-T------AGG---AGTATT--TTAAG-GT------GTTT-ATCAA--AGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACGTC-TT--A--------------AG--------------AAATACGC----A---GACA-T-TAAT-----CCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGATG---------TAC-ACGCTA-TGATAATTA----------------T--------------TTAGAAGAGAGAAGATCAA--ATA---CTAGTATAAT--AAACAA--AGTTAAT---ATCAATAAATTTTTT-CTAGAAA------TTCATTTTAAATTCGAC---AAGATGA-TATT-CATT---TCTCTTAAATTCCCTT--TCAACAG---GGTTCCATTC-ATTCAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATG-AA----T----TGTTTTGC---GAT---TAA-TAT-----ACATGTAC------ATGTGAAAATGTT-AATCAACGCTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTG-ATATAAAAAGGGGGAAAATTAA----------------GT---CGTCTTTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AATTTT--AACTA--GACTAAAAT-CAGGGTA-TGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T-A---CATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCAC-CATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAGAG-----CTGCCCCGA-AACCCTGACTTGCATACAATCG
gi|1 : CAGGCGTGTTAAC--GAAAACTT-CCTAA-GAT-TATTCATCAAAAAATTCT-T--AA-G-AAATA-TCTT-A-----GGAAAGTTTTGAAATCATCC-T------AAG---AATATC--TTAAG-GT------GTTT-ATTAA--AGC-----TGG---------CTAAACTAA-GACGTC-TT--A--------------AG--------------TCAT-TGT--------GACAAT-TAAA-----CCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGATGC--------TAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTAGAAGAGTGAGTATCAATTATAATTCTTGCATT-T--A---------TTCAT---ATCAATACATTTTTTTCGAGGTA------ATCATTTTCA-TTCGAC---AAGATGA-TTTT-CATT---GCTCTTAAATTCTCTT--TAAACAG---AGTTCCATTT-AATCAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACA-TTATTAAAAG-GATTTTT----TTTTTTGC---GAT---TAA-TAC-----ACATGTAT------------AAATGTT-CATCAACGCTTAGAGATTTAATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGTACATGT--AGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAG-ACAGAAAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTATGCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|5 : gCAGGCATGTTTAC--GAAAACTT-TCTAA-GAT-TGTTCGTAAGAAATTTCT-T--AA-G-ACATA-CCTT-A-----GGAAAATTTTAAGATCATCC-T------AAG---AATATC--TTAAG-GT------GTTT-ATCAA--AGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACAGC-TT--A--------------AGTCATTGTAACATAAAAATACGT----ACTAAACT-TATAA------CCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------ggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|1 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgAGG-ATGATT-T--CAAAACTTTCCTAA-GAT-ATTTCTTAAGAA-TTTTT-T--GATG-A-ATAATCTT-A-----GGAAcataa
gi|5 : gcaggcgtgttaacgaaaacAGG-ATGATCTT--AAAATTTT-CCTAA-GGTATGT-CTTAAGAAATTTCT-TACGA---ACA-A-TCTT-A-----GAAAaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgcaggcatgtttacgaaaacGGCATGTTTACCGAAAAACTT-CCTAA-GAT-TGTTCGCA-GAAATTTCT-T--AA-G-ACATA-TCTTTA-----GGAA--TTTTAAGATCATCCAT------AAG---AATATC--TTA-G-GT------GTTTTATCAA--AGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--A--------------AGTCATTGTAACAC--AAATACGTTACTA---GACT-TATAA------CCATTTCCAGGAAT-AAATAGTTCACACTTTGCCCGTATGATGT--------TACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTAGAAGAGTGAAAATCAA--ATA-----ATTATAATTCAAACAATTTTTTAAA---ATCTATAAaagaatatcttaaggtgtttatcaaagttgtcttaagagtatcctaaactaagacagcttaagtcattgtaacataaaaatacgtactaaacttataaccatttccaggaataagatagttcacactttgccgtatgatgttaatttgttaaacgctatgataattatcataa
gi|16 : GGCATGTTTAC--AAAAACTT-CCTAA-GAT-TGTTCCCAAGAAATTTCT-T--AA-G-ACATA-TCTT-A-----GGAAAAAATTAAGATCATCC-T------AAG---A
gi|6 : AAAATT-CCTAAAGATATGT-CTTAAGAAATTTCTGC--GA---ACA-A-TCTT-A-----GGAA
gi|16 : ggcatgtttaccgaaaaacTT-CCTAA-GATATGT-CTTAAGAAATTTCT-T--GG-GAACA-A-TCTT-A-----GGAAaagatcatccataagaatatcttaggtgttttatcaaagctgtcttaggagtatcctaaactaataacatccttaagtcattgtaacacaaatacgttactagacttataaccatttccaggaataaatagttcacactttgcccgtatgatgttacaacgctagtgatagttatcattaatggaaatattttagaagagtgaaaatcaaataattataattcaaacaattttttaaaatctataa
gi|19 : ggcatgtttacaaaaacTAAGAAATTTCT-T--AA-G-ACATA-TCTT-A-----GGAAaaaattaagatcatcctaaga
gi|8 : GAAATTACC-T--AA-T-ACATA-TCTT-A-----GGATTATTTTGAGACCATCT-T------AAG---ATTATC--TCCTT-CT------GTTT-ATCAA--AGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACAAC-TTACA--------------AGTCACAGTGACA---AAGTACTA----A---GCC----TAAA-----CCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGATGC--------TAC-A
gi|9 : aTTTCG-T--TA-C-ACATA-TCTT-AAAGTAGGAAAATTTAAAGATCATCC-T------AAG---AATATC--TTAAG-GT------GTTT-ATCAA--AGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATGCC-CT--AAGTCATTGTGACCTAG--------------AAATACGC----A---GACT-T-TAGTTTAAACCATTTCCA
gi|1 : gaactttccattgtaaccatCT-T--AA-G-ATAT--TCTT-A-----GGATGATTTCAAAACTTTCC-T------AAG---A-TATTTCTTAAG-A-------ATTT-TTTGATGAATAATCTTAGGA
gi|14 : gcaggcgtgttaacgaaaactGGTCATCC-TTTAACTAGGGAAAATATC--TTAAGCGTCTGGCGGTTT-ATCAA--AGCTGTCTTAGAAGTCACTCCTAAAgtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|3 : atttacctcat--AGTTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTC-TGGACATTTATT-AATGAAA----TTAAATATTTTGCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATATCAATATGTTCAGTGGAC-CTT-AAG---CAACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAA------TTTGAGCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACCACAAAGGAACAAAGGAAAAATTAA----------------at
gi|12 : atgatgctaacacggctttttatgataacttatcatttaatgaaaatatttacgaagagtgattacctaaagcttcattaaatcactcctaattcaaaccttaaatctattaatcGATG--TATT-AGTT---GCTCTTAAATTCTCTT--TAGATAG---AGTTCTATTT-GATCATTCATAATTC-TTGAAC-CATGAAAAGAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|4 : ggtaatcacttaaaacaaaattaactTCAACGCTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGC------GT--AGAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTG-ATATAAAA-GGGGGAAAATTAA----------------GT---CGTCTT-GCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AATTTT--AACTA--GACTAAAAT-CAGGGTA-TGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T-A---CATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-AC-CATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAGAG-----CTG-CCCGA-AACCCTGACTTGCATACAA
gi|1 : ATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT--GTTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTA--GACTAAAAT-TAGAGAA-TGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T-C---CGTTTTCGG-C--AAGGAGTGG-----GAGGT--G------TGAATCTCAC-TATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAGAA-----CTACCCCGA-CGCTCC-AGTTACATAatc
gi|7 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtAAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AACTTTC-AGC----GACTGAAATGCAGTG-A-TGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T-C---CGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCAC-TATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAGAA-----TTGGCCCGACAACTCCCAGTTTAATACAAT
gi|4 : TTCA-TACCCTGATTTTAGT-C-T------AGTTAA--AATTAAGGACTAAAGT-CAGAATACTGAA
gi|13 : tcaacgcttcgagttttaatcctagactaaatgcatgcatttcttttggccagttcaactaactaatagtagggcgtagaatcaactgtagcattaaaccccggaccaaaaccaactttcacacacattgatataaaagggggaaaattaagtcgtcttgcttatacattgacgtgtactcaatcaggaacaaataaatgcgccaacttaaggctacccataaaggtacagagcacctaataaaatgaagttcaattattgttcatgcactttcaaaataAAAAT-CAGGGAA-TTAAAACGTTCCCTCAA-TCTGAGTC----------------------ACATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--Aaccgttccttcaagtctgaattaatgtgacgataaacagctgtctcatggtatttcagaatgctgaaatacattttcggcaaggagtggtggttgtggtgagtgaatctaccattttgcacacactttgttttgaaatactatgcacattaccaagagctgcccgaaaccctgacttgcatacaaatc
gi|10 : TA---TTTCCAGAAT--GGCTTCTT-AAACT-C---CGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTGcg
gi|11 : TTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCAC-TATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAGAA-----CTGTCCCGACAACTC
gi|18 : ctgAC-TATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----cc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 11 4 11111 111111 22222 44444444444444444 22222222 9999999999999999999999999999999 1 11 22222222222222222222222222222222222222222222222222 1111 11 5555555 333 11 1 1 111 1 111 1 1 1 11 999999999999999999999999999999999999 66666666666 333 3 22222 11 1 1 333 2222222222 11 333333 1 888888888888888888888 1 8888888888 22 11 333333333333 1 1 2222222222222 111 1111 1111 1 11 111111 11111 11111 11 1
lowQualScore : 11 0 1 3 5 22222 5 1 5 666666 5 7777 6 77 99 2 77777 55555555555555555 7 3 1 0 99999999 6 8 8 0 1111111111111111111111111111111 0 55 33 00000000000000000000000000000000000000000000000000 8888 1 0 99 1 1 9999999 1 6 777 33 0 2 0 777 0 3 777 1 0 4 0 0 7 7 88 99 999999999999999999999999999999999999 55555555555 1 000 2 2 0 55555 33 0 3 2 0 1 777 2 9999999999 33 55 1 222222 3 55 0 1 2 7 444444444444444444444 4 1 77 0 1 22 7 5555555555 1 1 0 2 33 3 4 33 1 1 3 2 000000000000 0 5 3 8 8 0 0 3 3 8888888888888 5 5 5 2 111 6 99 4444 6 6 2222 5 77 5 11 3 1 5 999999 5 5 5 77 77 44444 6 6 66666 5 00 8 6 2 1
lowQualScore : .. . . . . ..... . . . ...... . .... . .. .. . ..... ................. . . . . ........ . . . . ............................... . .. .. .................................................. .... . . .. . . ....... . . ... .. . . . ... . . ... . . . . . . . .. .. .................................... ........... . ... . . . ..... .. . . . . . ... . .......... .. .. . ...... . .. . . . . ..................... . . .. . . .. . .......... . . . . .. . . .. . . . . ............ . . . . . . . . . ............. . . . . ... . .. .... . . .... . .. . .. . . . ...... . . . .. .. ..... . . ..... . .. . . . .
lowQualScore : 00 0 0 2 0 55555 7 4 7 444444 7 6666 7 77 22 5 55555 22222222222222222 3 2 0 8 00000000 4 0 0 8 0000000000000000000000000000000 0 22 88 88888888888888888888888888888888888888888888888888 5555 0 7 33 0 0 3333333 0 7 333 22 0 0 0 555 0 5 555 2 0 0 0 0 3 3 33 33 000000000000000000000000000000000000 77777777777 0 777 0 5 0 00000 88 0 0 5 0 0 555 5 8888888888 88 00 0 000000 2 22 0 0 5 0 222222222222222222222 0 0 33 7 0 00 3 3333333333 0 0 7 5 22 2 2 88 0 0 2 0 555555555555 0 0 2 0 8 6 8 2 8 6666666666666 0 6 0 8 777 7 22 2222 7 7 1111 7 99 5 55 3 0 7 222222 7 7 7 99 99 33333 7 7 77777 2 88 0 0 5 0
consensus : CAGGCATGTTTAC--GAAAACTTCCTAAGAT-TGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC----------------AA----TTAAT---ATCAATAAATTTTTCTCNAGGAA------NTCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTAAATGAGATT-------TNTTTTGC---GATT--TAATTAC---A-ACATGTAC------ATGT-AAAATGTT--ATCAACGCTTCGAG-TTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCG-ATANAAAAAAGGGGAAAATTAA----------------GT---CGTCT-TGCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACT-CCGANTTGCATACAAT
Reference ( family-355 ) : CAGGCATGTTTAC--GAAAACTTCCTAAGATATGTTCNTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTAAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCNCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAGNATC--AA---TTAT-AATTCTNNCATNATTCAAAC----------------AA----TTAAN---ATCAATAAANTTCTCTCNAGGNAGATATTNTCATTTTNATTCCGACCAAAAGATGA-TATT-CGTTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CATTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTAAANGAGATTTTTTAAATNTTTTGCAGAGATTTGTAATTACTAAAAACATGTACCATTGTATATCAANATGTTCCGTCGACGCTT-GAG-TTT-AATCCTAA--ACTAAATGCA-TTCATTTGTTTTGGCCAGT-TCAANT---AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANAAAAACCCGGNCCAAAACCT-----AATTTTCACACACANCG-ANAGAAAAAAGGGGAAAATTAA----------------GTACGCGTCTNTGCTTATANATTGACGTGTACTCCGTCGGGANCAAATAAATGNNCCAACTTAAGGCTACCCATAAAGGTACATGTACAGCTAGAGCNCCNAATGAAATCAAGTT-AATTATTGTTCACGCA--CTTTNAAAATNTTCAATATCCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCCGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGCGGTNGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACT-CC-AGTTNCATACAAT
gi|1 : CAGGCGTGTTAAC--GAAAACTTCCTAAGAT-TATTCATCAAAAAATTCTTAAGAAATATC-TTA-----GGAAAGTTTTGAAATCATCC-TAAGAATATCTTAAG-GT------G-TTTATTAAAGCTG--------G------CTAAACTAA-GACG-TCTT--AAGTCATTGTGAC---A-A-----------------T----TAAACCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGA--------TGCTAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTA-GAAGAGTGAGTATC--AA---TTAT-AATTCTTGCAT--TT----------------------A----TTCAT---ATCAATACATTTTTTTCGAGGTA------ATCATTTTCATTC-GAC---AAGATGA-TTTT-CATTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACA-TTATTAAAAG-GATTTTT----TTTTTTGC---GAT---TAA-TAC-----ACATGTAT------------AAATGTT-CATCAACGCTTAGAGATTT-AATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGTACATGT--AGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAG-ACAGAAAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTATGCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|1 : gATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT-G-TTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTAGACTAAAAT-TAGAGAATGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGG-----GAGGTG--------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTACCCCGAC-GCT-CC-AGTTACATAggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|10 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtTA---TTTCCAGAAT--GGCTTCTT-AAACT----CCGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTG
gi|11 : ----CTGTTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAG-----AACTGTCCCGACAACT-CC-
gi|12 : GATG--TATT-AGTTGCT-CTT---AAAT-TCTCTTTAGATAG---AGTTCTATTTGAT-CATTCATAATTC-TTGAAC-CATGAAAAGAc
gi|13 : ggtaatcacttaaaacaaaattaactAAAAT-CAGGGAATTAAAACGTTCCCTCAA-TCTGAGTC--A--------------------CATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--A
gi|14 : AAAATATCTTAAGCGTCTGGCGG-TTTATCAAAGCTGTCTTAGAAGTCACTCCTAAAcg
gi|16 : atttacctcatggtcatcctttaactagggGGCATGTTTAC--AAAAACTTCCTAAGAT-TGTTCCCAAGAAATTTCTTAAGACATATC-TTA-----GGAAAAAATTAAGATCATCC-TAAGAat
gi|18 : ACT-ATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----
gi|19 : TAAGAAATTTCTTAAGACATATC-TTA-----GGAA
gi|2 : CAGGCATGTTTAT--GAAAACTTCCTAAGAT-TGTTCATATGAAATTTCTTGAGACATATC-TTA-----GGAAAATGTTAAGATCATCC-TAGGAGTATTTTAAG-GT------G-TTTATCAAAGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACG-TCTT--AAG---------------AAATACG----CAGAC-AT----TAATCCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGA--------TG-TAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGAGAAGATC--AA-----AT-A---CTAGTATAAT--AAAC----------------AAAG--TTAAT---ATCAATAAATTTTT-TCTAGAAA------TTCATTTTAAATTCGAC---AAGATGA-TATT-CATTTCT-CTT---AAAT-TCCCTTTCAACAG---GGTTCCATTCATT-CAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATGA-ATT--------GTTTTGC---GATT---AAT------ATACATGTAC------ATGTGAAAATGTTA-ATCAACGCTTCGAG-TTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTG-ATATAAAAAGGGGGAAAATTAA----------------GT---CGTCTTTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTGCCCCGA-AACC-CTGACTTGCATACAAT
gi|3 : A-TGAAAAT-A----------------T--------------TTACGAAGAGTGATTACCTAAAGCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTATTAATCAG----TTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTCT-GGACATTTATTAA-TGAAATT----AAATATTTTGCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATATCAATATGTTCAGTGGAC-CTT-AAG---C-AACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAA------TTTGAGCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACCACAAAGGAACAAAGGAAAAATTAA----------------cg
gi|4 : atgatgctaacacggctttttatgataacttatcatttaTCAACGCTTCGAG-TTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGC------GT--AGAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTG-ATATAAAAG-GGGGAAAATTAA----------------GT---CGTCT-TGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-ACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTG-CCCGA-AACC-CTGACTTGCATACAAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|5 : CAGGCATGTTTAC--GAAAACTTTCTAAGAT-TGTTCGTAAGAAATTTCTTAAGACATACC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACA-GCTT--AAGTCATTGTAACATAA-AAATACGTAC-TAAAC-TTA---T-AACCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------atc
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgGGCATGTTTACCGAAAAACTTCCTAAGAT-TGTTCGC-AGAAATTTCTTAAGACATATCTTTA-----GG--AATTTTAAGATCATCCATAAGAATATCTT-AG-GT------GTTTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--AAGTCATTGTAAC---ACAAATACGTTACTAGAC-TTA---T-AACCATTTCCAGGAATAA-ATAGTTCACACTTTGCCCGTATGA--------TGTTACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTA-GAAGAGTGAAAATC--AA-----AT-AATT-----ATAATTCAAAC----------------AATTTTTTAAA---ATCTATAAcataa
gi|7 : AAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AAC-TTTCAGC--GACTGAAATGCAGTG-ATGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T----CCGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCACT-ATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAG-----AATTGGCCCGACAACTCCC-AGTTTAATACAAT
gi|8 : AGAAATTACCTAATACATATC-TTA-----GGATTATTTTGAGACCATCT-TAAGATTATCTCCTT-CT------G-TTTATCAAAGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACA-ACTTACAAGTCACAGTGAC---A-AAGTAC-----TAAGC-C-----TAAACCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGA--------TGCTAC-A
gi|9 : TTTCGTTACACATATC-TTAAAGTAGGAAAATTTAAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATG-CCCT--AAGTCATTGTGACCTAG-AAATACG----CAGACTTTAGTTTAAACCATTTCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 111111 22222 44444444444444444 22222222 9999999999999999999999999999999 1 11 0000000000000000000000000000000000000000000000000000000000 11 3333333 222 11 1 1 111 1 111 1 1 1 1 55555555555 5555555555555555555555 666666666666 1 2222 11 11 1 1 222 2222222222 11 333333 11 777777777777777777777 111 5555555555 11 11 333333333333 1 1 3333333333333 111 1111 1111 1 111111 11111 11111 11
lowQualScore : 11 0 5 22222 5 1 5 666666 5 7777 6 77 99 77777 55555555555555555 7 3 1 0 99999999 6 8 8 0 1111111111111111111111111111111 0 22 33 0000000000000000000000000000000000000000000000000000000000 99 1 9999999 6 333 33 0 0 777 0 1 777 1 0 1 0 0 7 7 2 22222222222 1 9999999999999999999999 777777777777 3 9999 33 0 9 33 0 1 1 0 0 333 2 9999999999 33 22 0 222222 3 888 1 33 7 000000000000000000000 777 0 7 8888888888 1 22 4 33 0 1 3 000000000000 0 5 3 8 8 0 0 3 3 3333333333333 5 5 5 111 6 99 4444 6 6 2222 5 77 5 77 3 1 5 999999 5 5 5 77 77 44444 6 6 66666 5 00 8 1 0
lowQualScore : .. . . ..... . . . ...... . .... . .. .. ..... ................. . . . . ........ . . . . ............................... . .. .. .......................................................... .. . ....... . ... .. . . ... . . ... . . . . . . . . ........... . ...................... ............ . .... .. . . .. . . . . . ... . .......... .. .. . ...... . ... . .. . ..................... ... . . .......... . .. . .. . . . ............ . . . . . . . . . ............. . . . ... . .. .... . . .... . .. . .. . . . ...... . . . .. .. ..... . . ..... . .. . . .
lowQualScore : 00 4 0 55555 7 4 7 444444 7 6666 7 77 22 55555 22222222222222222 3 2 4 8 00000000 4 0 0 8 0000000000000000000000000000000 0 22 88 5555555555555555555555555555555555555555555555555555555555 33 0 3333333 7 333 22 0 0 555 0 0 555 2 0 0 0 0 3 3 3 00000000000 0 7777777777777777777777 777777777777 3 7777 88 2 8 88 0 0 0 0 2 000 5 8888888888 88 00 8 000000 2 000 0 88 0 666666666666666666666 777 7 3 3333333333 0 00 2 88 2 0 2 555555555555 0 0 2 0 8 6 8 2 8 4444444444444 0 6 0 777 7 22 2222 7 7 1111 7 99 5 00 0 0 7 222222 7 7 7 99 99 33333 7 7 77777 2 88 8 0 2
consensus : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATGAAA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AA-ATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
Reference ( family-355 ) : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTAAATGAGA---TT---TNTTTTGC---GATT--TAATTAC----AACATGTAC------ATGT-AAA-ATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGATANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
gi|1 : CAGGCGTGTTAAC--GAAAACTTCCTAAGATTATTCATCAAAAAATTCTTAAGAAATATC-TTA-----GGAAAGTTTTGAAATCATCC-TAAGAATATCTTAAG-GT------G-TTTATTAAAGCTG--------G------CTAAACTAA-GACG-TCTT--AAGTCATTGTGAC---A-A-----------------T----TAAACCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGA--------TGCTAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTA-GAAGAGTGAGTATC--AA---TTAT-AATTCTTGCAT--TT--------------A----TTCAT-----------ATCAATACATTTTTTTCGAGGTAA------TCATTTTCATTC-GAC---AAGATGA-TTTT-CATTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACA-TTATTAAAAG-GATTTTT---TTTTTTGC---GA-T--TAA-TAC-----ACATGTAT------------AA-ATGTTCA-TCAACG--CTTAGAGATTTAATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGTACATGT--AGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAGACAGA--AAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTAT-GCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|1 : gATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT--GTTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTAGACTAAAAT-TAGAGAATGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGG-----GAGGTG--------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTACCCCGAC-GCTCC-AGTTACATAggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|10 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtTA---TTTCCAGAAT--GGCTTCTT-AAACT----CCGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTG
gi|11 : ----CTGTTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAG-----AACTGTCCCGACAACTCC
gi|12 : GATG--TATT-AGTTGCT-CTT---AAAT-TCTCTTTAGATAG---AGTTCTATTTGAT-CATTCATAATTC-TTGAAC-CATGAAAAGAc
gi|13 : ggtaatcacttaaaacaaaattaactAAAAT-CAGGGAATTAAAACGTTCCCTCAA-TCTGAGTC----------------------ACATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--A
gi|14 : AAAATATCTTAAGCGTCTGGCGG-TTTATCAAAGCTGTCTTAGAAGTCACTCCTAAAcg
gi|16 : atttacctcatggtcatcctttaactagggGGCATGTTTAC--AAAAACTTCCTAAGATTGTTCCCAAGAAATTTCTTAAGACATATC-TTA-----GGAAAAAATTAAGATCATCC-TAAGAat
gi|18 : ACT-ATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----
gi|19 : TAAGAAATTTCTTAAGACATATC-TTA-----GGAA
gi|2 : CAGGCATGTTTAT--GAAAACTTCCTAAGATTGTTCATATGAAATTTCTTGAGACATATC-TTA-----GGAAAATGTTAAGATCATCC-TAGGAGTATTTTAAG-GT------G-TTTATCAAAGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACG-TCTT--AAG---------------AAATACG----CAGAC-AT----TAATCCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGA--------TG-TAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGAGAAGATC--AA-----AT-A---CTAGTATAAT--AAAC-----A---AAG--TTAAT-----------ATCAATAAATTTTT-TCTAGAAAT------TCATTTTAAATTCGAC---AAGATGA-TATT-CATTTCT-CTT---AAAT-TCCCTTTCAACAG---GGTTCCATTCATT-CAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATGAA-----T---TGTTTTGC---GATT---AAT-AT----A-CATGTAC------ATGTGAAA-ATGTT-AATCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTGATATA--AAAAGGGGGAAAATTAA----------------GT---CGTCT-TTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTGCCCCGA-AACCCTGACTTGCATACAAT
gi|3 : A-TGAAAAT-A----------------T--------------TTACGAAGAGTGATTACCTAAAGCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTA----TTAATCAGTTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTC-TGGACATTTATT-AATGAAA---TTAAATATTTTGCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATAT-CAATATGT----TCAGTGGACCTTAAG---CAACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAA------TTTGAGCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACC-ACAAAGGAACAAAGGAAAAATTAA----------------cg
gi|4 : atgatgctaacacggctttttatgataacttatcattta-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGC------GT--AGAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTGATATA--AAAG-GGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-ACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTG-CCCGA-AACCCTGACTTGCATACAAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|5 : CAGGCATGTTTAC--GAAAACTTTCTAAGATTGTTCGTAAGAAATTTCTTAAGACATACC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACA-GCTT--AAGTCATTGTAACATAA-AAATACGTAC-TAAAC-TTA---T-AACCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------atc
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgGGCATGTTTACCGAAAAACTTCCTAAGATTGTTCGCA-GAAATTTCTTAAGACATATCTTTA-----GG--AATTTTAAGATCATCCATAAGAATATCTT-AG-GT------GTTTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--AAGTCATTGTAAC---ACAAATACGTTACTAGAC-TTA---T-AACCATTTCCAGGAATAA-ATAGTTCACACTTTGCCCGTATGA--------TGTTACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTA-GAAGAGTGAAAATC--AA-----AT-AATT-----ATAATTCAAAC-----A---ATTTTTTAAA-----------ATCTATAAcataa
gi|7 : AAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AAC-TTTCAGC--GACTGAAATGCAGTG-ATGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T----CCGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCACT-ATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAG-----AATTGGCCCGACAACTCCCAGTTTAATACAAT
gi|8 : AGAAATTACCTAATACATATC-TTA-----GGATTATTTTGAGACCATCT-TAAGATTATCTCCTT-CT------G-TTTATCAAAGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACA-ACTTACAAGTCACAGTGAC---A-AAGTAC-----TAAGC-C-----TAAACCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGA--------TGCTAC-A
gi|9 : TTGTAACCATTTTCGTTACACATATC-TTAAAGTAGGAAAATTTAAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATG-CCCT--AAGTCATTGTGACCTAG-AAATACG----CAGACTTTAGTTTAAACCATTTCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 111111 22222 44444444444444444 22222222 9999999999999999999999999999999 1 11 0000000000000000000000000000000000000000000000000000000000 11 3333333 222 11 1 1 111 1 111 1 1 1 1 44444444 5555555555555555555555 5555555555555 222 11 11 1 1 222 2222222222 11 333333 11 777777777777777777777 111 5555555555 11 11 333333333333 1 1 3333333333333 111 1111 1111 1 111111 11111 11111 11
lowQualScore : 11 0 5 22222 5 1 5 666666 5 7777 6 77 99 77777 55555555555555555 7 3 1 0 99999999 6 8 8 0 1111111111111111111111111111111 0 22 33 0000000000000000000000000000000000000000000000000000000000 99 1 9999999 6 333 33 0 0 777 0 1 777 1 0 1 0 0 7 7 2 77777777 1 5555555555555555555555 6666666666666 333 33 0 44 33 0 1 1 0 0 333 2 9999999999 33 22 0 222222 3 888 1 33 7 000000000000000000000 777 0 7 8888888888 1 22 4 33 0 1 3 000000000000 0 5 3 8 8 0 0 3 3 3333333333333 5 5 5 111 6 99 4444 6 6 2222 5 77 5 77 3 1 5 999999 5 5 5 77 77 44444 6 6 66666 5 00 8 1 0
lowQualScore : .. . . ..... . . . ...... . .... . .. .. ..... ................. . . . . ........ . . . . ............................... . .. .. .......................................................... .. . ....... . ... .. . . ... . . ... . . . . . . . . ........ . ...................... ............. ... .. . .. .. . . . . . ... . .......... .. .. . ...... . ... . .. . ..................... ... . . .......... . .. . .. . . . ............ . . . . . . . . . ............. . . . ... . .. .... . . .... . .. . .. . . . ...... . . . .. .. ..... . . ..... . .. . . .
lowQualScore : 00 4 0 55555 7 4 7 444444 7 6666 7 77 22 55555 22222222222222222 3 2 4 8 00000000 4 0 0 8 0000000000000000000000000000000 0 22 88 5555555555555555555555555555555555555555555555555555555555 33 0 3333333 7 333 22 0 0 555 0 0 555 2 0 0 0 0 3 3 0 77777777 0 0000000000000000000000 0000000000000 000 88 2 55 88 0 0 0 0 2 000 5 8888888888 88 00 8 000000 2 000 0 88 0 666666666666666666666 777 7 3 3333333333 0 00 2 88 2 0 2 555555555555 0 0 2 0 8 6 8 2 8 4444444444444 0 6 0 777 7 22 2222 7 7 1111 7 99 5 00 0 0 7 222222 7 7 7 99 99 33333 7 7 77777 2 88 8 0 2
consensus : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATGAA---TT---TNTTTTGC---GATTT--AATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
Reference ( family-355 ) : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATGAA--ATT---TNTTTTGC---GATTT--AATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
gi|1 : CAGGCGTGTTAAC--GAAAACTTCCTAAGATTATTCATCAAAAAATTCTTAAGAAATATC-TTA-----GGAAAGTTTTGAAATCATCC-TAAGAATATCTTAAG-GT------G-TTTATTAAAGCTG--------G------CTAAACTAA-GACG-TCTT--AAGTCATTGTGAC---A-A-----------------T----TAAACCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGA--------TGCTAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTA-GAAGAGTGAGTATC--AA---TTAT-AATTCTTGCAT--TT--------------A----TTCAT-----------ATCAATACATTTTTTTCGAGGTAA------TCATTTTCATTC-GAC---AAGATGA-TTTT-CATTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACA-TTATTAAAAGGATTTTT---TTTTTTGC---GA-TT--AA-TAC-----ACATGTA----------T--AAATGTTCA-TCAACG--CTTAGAGATTTAATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGTACATGT--AGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAGACAGA--AAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTAT-GCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|1 : gATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT--GTTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTAGACTAAAAT-TAGAGAATGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGG-----GAGGTG--------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTACCCCGAC-GCTCC-AGTTACATAggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|10 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtTA---TTTCCAGAAT--GGCTTCTT-AAACT----CCGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTG
gi|11 : ----CTGTTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAG-----AACTGTCCCGACAACTCC
gi|12 : GATG--TATT-AGTTGCT-CTT---AAAT-TCTCTTTAGATAG---AGTTCTATTTGAT-CATTCATAATTC-TTGAAC-CATGAAAAGAc
gi|13 : ggtaatcacttaaaacaaaattaactAAAAT-CAGGGAATTAAAACGTTCCCTCAA-TCTGAGTC----------------------ACATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--A
gi|14 : AAAATATCTTAAGCGTCTGGCGG-TTTATCAAAGCTGTCTTAGAAGTCACTCCTAAAcg
gi|16 : atttacctcatggtcatcctttaactagggGGCATGTTTAC--AAAAACTTCCTAAGATTGTTCCCAAGAAATTTCTTAAGACATATC-TTA-----GGAAAAAATTAAGATCATCC-TAAGAat
gi|18 : ACT-ATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----
gi|19 : TAAGAAATTTCTTAAGACATATC-TTA-----GGAA
gi|2 : CAGGCATGTTTAT--GAAAACTTCCTAAGATTGTTCATATGAAATTTCTTGAGACATATC-TTA-----GGAAAATGTTAAGATCATCC-TAGGAGTATTTTAAG-GT------G-TTTATCAAAGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACG-TCTT--AAG---------------AAATACG----CAGAC-AT----TAATCCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGA--------TG-TAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGAGAAGATC--AA-----AT-A---CTAGTATAAT--AAAC-----A---AAG--TTAAT-----------ATCAATAAATTTTT-TCTAGAAAT------TCATTTTAAATTCGAC---AAGATGA-TATT-CATTTCT-CTT---AAAT-TCCCTTTCAACAG---GGTTCCATTCATT-CAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATGAA----T---TGTTTTGC---GATT---AAT-AT----A-CATGTAC------ATGTGAAAATGTT-AATCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTGATATA--AAAAGGGGGAAAATTAA----------------GT---CGTCT-TTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTGCCCCGA-AACCCTGACTTGCATACAAT
gi|3 : A-TGAAAAT-A----------------T--------------TTACGAAGAGTGATTACCTAAAGCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTA----TTAATCAGTTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTCT-GGACATTTATT-AATGAA--ATTAAATATTTTGCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATAT--CAATATG-T-TCAGTGGACCTTAAGC---AACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAA------TTTGAGCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACC-ACAAAGGAACAAAGGAAAAATTAA----------------cg
gi|4 : atgatgctaacacggctttttatgataacttatcattta-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGC------GT--AGAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTGATATA--AAAG-GGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-ACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTG-CCCGA-AACCCTGACTTGCATACAAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|5 : CAGGCATGTTTAC--GAAAACTTTCTAAGATTGTTCGTAAGAAATTTCTTAAGACATACC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACA-GCTT--AAGTCATTGTAACATAA-AAATACGTAC-TAAAC-TTA---T-AACCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------atc
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgGGCATGTTTACCGAAAAACTTCCTAAGATTGTTCGCA-GAAATTTCTTAAGACATATCTTTA-----GG--AATTTTAAGATCATCCATAAGAATATCTT-AG-GT------GTTTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--AAGTCATTGTAAC---ACAAATACGTTACTAGAC-TTA---T-AACCATTTCCAGGAATAA-ATAGTTCACACTTTGCCCGTATGA--------TGTTACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTA-GAAGAGTGAAAATC--AA-----AT-AATT-----ATAATTCAAAC-----A---ATTTTTTAAA-----------ATCTATAAcataa
gi|7 : AAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AAC-TTTCAGC--GACTGAAATGCAGTG-ATGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T----CCGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCACT-ATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAG-----AATTGGCCCGACAACTCCCAGTTTAATACAAT
gi|8 : AGAAATTACCTAATACATATC-TTA-----GGATTATTTTGAGACCATCT-TAAGATTATCTCCTT-CT------G-TTTATCAAAGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACA-ACTTACAAGTCACAGTGAC---A-AAGTAC-----TAAGC-C-----TAAACCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGA--------TGCTAC-A
gi|9 : TTGTAACCATTTTCGTTACACATATC-TTAAAGTAGGAAAATTTAAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATG-CCCT--AAGTCATTGTGACCTAG-AAATACG----CAGACTTTAGTTTAAACCATTTCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 111111 22222 44444444444444444 22222222 9999999999999999999999999999999 1 11 0000000000000000000000000000000000000000000000000000000000 11 3333333 222 11 1 1 111 1 111 1 1 1 1 3333333333333 5555555555555555555555 5555555555555 222 11 11 1 1 222 2222222222 11 333333 11 777777777777777777777 111 5555555555 11 11 333333333333 1 1 3333333333333 111 1111 1111 1 111111 11111 11111 11
lowQualScore : 11 0 5 22222 5 1 5 666666 5 7777 6 77 99 77777 55555555555555555 7 3 1 0 99999999 6 8 8 0 1111111111111111111111111111111 0 22 33 0000000000000000000000000000000000000000000000000000000000 99 1 9999999 6 333 33 0 0 777 0 1 777 1 0 1 0 0 7 7 2 7777777777777 5555555555555555555555 6666666666666 333 33 0 9 33 0 1 1 0 0 333 2 9999999999 33 22 0 222222 3 888 1 33 7 000000000000000000000 777 0 7 8888888888 1 22 4 33 0 1 3 000000000000 0 5 3 8 8 0 0 3 3 3333333333333 5 5 5 111 6 99 4444 6 6 2222 5 77 5 77 3 1 5 999999 5 5 5 77 77 44444 6 6 66666 5 00 8 1 0
lowQualScore : .. . . ..... . . . ...... . .... . .. .. ..... ................. . . . . ........ . . . . ............................... . .. .. .......................................................... .. . ....... . ... .. . . ... . . ... . . . . . . . . ............. ...................... ............. ... .. . . .. . . . . . ... . .......... .. .. . ...... . ... . .. . ..................... ... . . .......... . .. . .. . . . ............ . . . . . . . . . ............. . . . ... . .. .... . . .... . .. . .. . . . ...... . . . .. .. ..... . . ..... . .. . . .
lowQualScore : 00 4 0 55555 7 4 7 444444 7 6666 7 77 22 55555 22222222222222222 3 2 4 8 00000000 4 0 0 8 0000000000000000000000000000000 0 22 88 5555555555555555555555555555555555555555555555555555555555 33 0 3333333 7 333 22 0 0 555 0 0 555 2 0 0 0 0 3 3 0 3333333333333 0000000000000000000000 0000000000000 000 88 2 8 88 0 0 0 0 2 000 5 8888888888 88 00 8 000000 2 000 0 88 0 666666666666666666666 777 7 3 3333333333 0 00 2 88 2 0 2 555555555555 0 0 2 0 8 6 8 2 8 4444444444444 0 6 0 777 7 22 2222 7 7 1111 7 99 5 00 0 0 7 222222 7 7 7 99 99 33333 7 7 77777 2 88 8 0 2
consensus : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
Reference ( family-355 ) : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
gi|1 : CAGGCGTGTTAAC--GAAAACTTCCTAAGATTATTCATCAAAAAATTCTTAAGAAATATC-TTA-----GGAAAGTTTTGAAATCATCC-TAAGAATATCTTAAG-GT------G-TTTATTAAAGCTG--------G------CTAAACTAA-GACG-TCTT--AAGTCATTGTGAC---A-A-----------------T----TAAACCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGA--------TGCTAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTA-GAAGAGTGAGTATC--AA---TTAT-AATTCTTGCAT--TT--------------A----TTCAT-----------ATCAATACATTTTTTTCGAGGTAA------TCATTTTCATTC-GAC---AAGATGA-TTTT-CATTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACA-TTATTAAAAG-GATTTTT---TTTTTTGC---GA-T--TAA-TAC-----ACATGTA----------T--AAATGTTCA-TCAACG--CTTAGAGATTTAATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGTACATGT--AGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAGACAGA--AAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTAT-GCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|1 : gATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT--GTTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTAGACTAAAAT-TAGAGAATGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGG-----GAGGTG--------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTACCCCGAC-GCTCC-AGTTACATAggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|10 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtTA---TTTCCAGAAT--GGCTTCTT-AAACT----CCGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTG
gi|11 : ----CTGTTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAG-----AACTGTCCCGACAACTCC
gi|12 : GATG--TATT-AGTTGCT-CTT---AAAT-TCTCTTTAGATAG---AGTTCTATTTGAT-CATTCATAATTC-TTGAAC-CATGAAAAGAc
gi|13 : ggtaatcacttaaaacaaaattaactAAAAT-CAGGGAATTAAAACGTTCCCTCAA-TCTGAGTC----------------------ACATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--A
gi|14 : AAAATATCTTAAGCGTCTGGCGG-TTTATCAAAGCTGTCTTAGAAGTCACTCCTAAAcg
gi|16 : atttacctcatggtcatcctttaactagggGGCATGTTTAC--AAAAACTTCCTAAGATTGTTCCCAAGAAATTTCTTAAGACATATC-TTA-----GGAAAAAATTAAGATCATCC-TAAGAat
gi|18 : ACT-ATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----
gi|19 : TAAGAAATTTCTTAAGACATATC-TTA-----GGAA
gi|2 : CAGGCATGTTTAT--GAAAACTTCCTAAGATTGTTCATATGAAATTTCTTGAGACATATC-TTA-----GGAAAATGTTAAGATCATCC-TAGGAGTATTTTAAG-GT------G-TTTATCAAAGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACG-TCTT--AAG---------------AAATACG----CAGAC-AT----TAATCCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGA--------TG-TAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGAGAAGATC--AA-----AT-A---CTAGTATAAT--AAAC-----A---AAG--TTAAT-----------ATCAATAAATTTTT-TCTAGAAAT------TCATTTTAAATTCGAC---AAGATGA-TATT-CATTTCT-CTT---AAAT-TCCCTTTCAACAG---GGTTCCATTCATT-CAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATG-AA---TT----GTTTTGC---GATT---AAT-AT----A-CATGTAC------ATGTGAAAATGTT-AATCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTGATATA--AAAAGGGGGAAAATTAA----------------GT---CGTCT-TTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTGCCCCGA-AACCCTGACTTGCATACAAT
gi|3 : A-TGAAAAT-A----------------T--------------TTACGAAGAGTGATTACCTAAAGCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTA----TTAATCAGTTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTC-TGGACATTTATT-AATGAAA---TTAAATATTTTGCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATAT--CAATATG-T-TCAGTGGACCTTAAG---CAACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAA------TTTGAGCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACC-ACAAAGGAACAAAGGAAAAATTAA----------------cg
gi|4 : atgatgctaacacggctttttatgataacttatcattta-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGC------GT--AGAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTGATATA--AAAG-GGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-ACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTG-CCCGA-AACCCTGACTTGCATACAAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|5 : CAGGCATGTTTAC--GAAAACTTTCTAAGATTGTTCGTAAGAAATTTCTTAAGACATACC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACA-GCTT--AAGTCATTGTAACATAA-AAATACGTAC-TAAAC-TTA---T-AACCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------atc
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgGGCATGTTTACCGAAAAACTTCCTAAGATTGTTCGCA-GAAATTTCTTAAGACATATCTTTA-----GG--AATTTTAAGATCATCCATAAGAATATCTT-AG-GT------GTTTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--AAGTCATTGTAAC---ACAAATACGTTACTAGAC-TTA---T-AACCATTTCCAGGAATAA-ATAGTTCACACTTTGCCCGTATGA--------TGTTACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTA-GAAGAGTGAAAATC--AA-----AT-AATT-----ATAATTCAAAC-----A---ATTTTTTAAA-----------ATCTATAAcataa
gi|7 : AAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AAC-TTTCAGC--GACTGAAATGCAGTG-ATGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T----CCGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCACT-ATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAG-----AATTGGCCCGACAACTCCCAGTTTAATACAAT
gi|8 : AGAAATTACCTAATACATATC-TTA-----GGATTATTTTGAGACCATCT-TAAGATTATCTCCTT-CT------G-TTTATCAAAGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACA-ACTTACAAGTCACAGTGAC---A-AAGTAC-----TAAGC-C-----TAAACCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGA--------TGCTAC-A
gi|9 : TTGTAACCATTTTCGTTACACATATC-TTAAAGTAGGAAAATTTAAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATG-CCCT--AAGTCATTGTGACCTAG-AAATACG----CAGACTTTAGTTTAAACCATTTCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 111111 22222 44444444444444444 22222222 9999999999999999999999999999999 1 11 0000000000000000000000000000000000000000000000000000000000 11 3333333 222 11 1 1 111 1 111 1 1 1 1 3333333333333 5555555555555555555555 5555555555555 222 11 11 1 1 222 2222222222 11 333333 11 777777777777777777777 111 5555555555 11 11 333333333333 1 1 3333333333333 111 1111 1111 1 111111 11111 11111 11
lowQualScore : 11 0 5 22222 5 1 5 666666 5 7777 6 77 99 77777 55555555555555555 7 3 1 0 99999999 6 8 8 0 1111111111111111111111111111111 0 22 33 0000000000000000000000000000000000000000000000000000000000 99 1 9999999 6 333 33 0 0 777 0 1 777 1 0 1 0 0 7 7 2 7777777777777 5555555555555555555555 6666666666666 333 33 0 9 33 0 1 1 0 0 333 2 9999999999 33 22 0 222222 3 888 1 33 7 000000000000000000000 777 0 7 8888888888 1 22 4 33 0 1 3 000000000000 0 5 3 8 8 0 0 3 3 3333333333333 5 5 5 111 6 99 4444 6 6 2222 5 77 5 77 3 1 5 999999 5 5 5 77 77 44444 6 6 66666 5 00 8 1 0
lowQualScore : .. . . ..... . . . ...... . .... . .. .. ..... ................. . . . . ........ . . . . ............................... . .. .. .......................................................... .. . ....... . ... .. . . ... . . ... . . . . . . . . ............. ...................... ............. ... .. . . .. . . . . . ... . .......... .. .. . ...... . ... . .. . ..................... ... . . .......... . .. . .. . . . ............ . . . . . . . . . ............. . . . ... . .. .... . . .... . .. . .. . . . ...... . . . .. .. ..... . . ..... . .. . . .
lowQualScore : 00 4 0 55555 7 4 7 444444 7 6666 7 77 22 55555 22222222222222222 3 2 4 8 00000000 4 0 0 8 0000000000000000000000000000000 0 22 88 5555555555555555555555555555555555555555555555555555555555 33 0 3333333 7 333 22 0 0 555 0 0 555 2 0 0 0 0 3 3 0 3333333333333 0000000000000000000000 0000000000000 000 88 2 8 88 0 0 0 0 2 000 5 8888888888 88 00 8 000000 2 000 0 88 0 666666666666666666666 777 7 3 3333333333 0 00 2 88 2 0 2 555555555555 0 0 2 0 8 6 8 2 8 4444444444444 0 6 0 777 7 22 2222 7 7 1111 7 99 5 00 0 0 7 222222 7 7 7 99 99 33333 7 7 77777 2 88 8 0 2
consensus : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
Reference ( family-355 ) : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
gi|1 : CAGGCGTGTTAAC--GAAAACTTCCTAAGATTATTCATCAAAAAATTCTTAAGAAATATC-TTA-----GGAAAGTTTTGAAATCATCC-TAAGAATATCTTAAG-GT------G-TTTATTAAAGCTG--------G------CTAAACTAA-GACG-TCTT--AAGTCATTGTGAC---A-A-----------------T----TAAACCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGA--------TGCTAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTA-GAAGAGTGAGTATC--AA---TTAT-AATTCTTGCAT--TT--------------A----TTCAT-----------ATCAATACATTTTTTTCGAGGTAA------TCATTTTCATTC-GAC---AAGATGA-TTTT-CATTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACA-TTATTAAAAG-GATTTTT---TTTTTTGC---GA-T--TAA-TAC-----ACATGTA----------T--AAATGTTCA-TCAACG--CTTAGAGATTTAATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGTACATGT--AGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAGACAGA--AAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTAT-GCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|1 : gATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT--GTTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTAGACTAAAAT-TAGAGAATGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGG-----GAGGTG--------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTACCCCGAC-GCTCC-AGTTACATAggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|10 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtTA---TTTCCAGAAT--GGCTTCTT-AAACT----CCGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTG
gi|11 : ----CTGTTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAG-----AACTGTCCCGACAACTCC
gi|12 : GATG--TATT-AGTTGCT-CTT---AAAT-TCTCTTTAGATAG---AGTTCTATTTGAT-CATTCATAATTC-TTGAAC-CATGAAAAGAc
gi|13 : ggtaatcacttaaaacaaaattaactAAAAT-CAGGGAATTAAAACGTTCCCTCAA-TCTGAGTC----------------------ACATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--A
gi|14 : AAAATATCTTAAGCGTCTGGCGG-TTTATCAAAGCTGTCTTAGAAGTCACTCCTAAAcg
gi|16 : atttacctcatggtcatcctttaactagggGGCATGTTTAC--AAAAACTTCCTAAGATTGTTCCCAAGAAATTTCTTAAGACATATC-TTA-----GGAAAAAATTAAGATCATCC-TAAGAat
gi|18 : ACT-ATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----
gi|19 : TAAGAAATTTCTTAAGACATATC-TTA-----GGAA
gi|2 : CAGGCATGTTTAT--GAAAACTTCCTAAGATTGTTCATATGAAATTTCTTGAGACATATC-TTA-----GGAAAATGTTAAGATCATCC-TAGGAGTATTTTAAG-GT------G-TTTATCAAAGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACG-TCTT--AAG---------------AAATACG----CAGAC-AT----TAATCCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGA--------TG-TAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGAGAAGATC--AA-----AT-A---CTAGTATAAT--AAAC-----A---AAG--TTAAT-----------ATCAATAAATTTTT-TCTAGAAAT------TCATTTTAAATTCGAC---AAGATGA-TATT-CATTTCT-CTT---AAAT-TCCCTTTCAACAG---GGTTCCATTCATT-CAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATG-AA---TT----GTTTTGC---GATT---AAT-AT----A-CATGTAC------ATGTGAAAATGTT-AATCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTGATATA--AAAAGGGGGAAAATTAA----------------GT---CGTCT-TTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTGCCCCGA-AACCCTGACTTGCATACAAT
gi|3 : A-TGAAAAT-A----------------T--------------TTACGAAGAGTGATTACCTAAAGCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTA----TTAATCAGTTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTC-TGGACATTTATT-AATGAAA---TTAAATATTTTGCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATAT--CAATATG-T-TCAGTGGACCTTAAG---CAACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAA------TTTGAGCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACC-ACAAAGGAACAAAGGAAAAATTAA----------------cg
gi|4 : atgatgctaacacggctttttatgataacttatcattta-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGC------GT--AGAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTGATATA--AAAG-GGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-ACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTG-CCCGA-AACCCTGACTTGCATACAAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|5 : CAGGCATGTTTAC--GAAAACTTTCTAAGATTGTTCGTAAGAAATTTCTTAAGACATACC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACA-GCTT--AAGTCATTGTAACATAA-AAATACGTAC-TAAAC-TTA---T-AACCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------atc
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgGGCATGTTTACCGAAAAACTTCCTAAGATTGTTCGCA-GAAATTTCTTAAGACATATCTTTA-----GG--AATTTTAAGATCATCCATAAGAATATCTT-AG-GT------GTTTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--AAGTCATTGTAAC---ACAAATACGTTACTAGAC-TTA---T-AACCATTTCCAGGAATAA-ATAGTTCACACTTTGCCCGTATGA--------TGTTACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTA-GAAGAGTGAAAATC--AA-----AT-AATT-----ATAATTCAAAC-----A---ATTTTTTAAA-----------ATCTATAAcataa
gi|7 : AAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AAC-TTTCAGC--GACTGAAATGCAGTG-ATGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T----CCGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCACT-ATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAG-----AATTGGCCCGACAACTCCCAGTTTAATACAAT
gi|8 : AGAAATTACCTAATACATATC-TTA-----GGATTATTTTGAGACCATCT-TAAGATTATCTCCTT-CT------G-TTTATCAAAGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACA-ACTTACAAGTCACAGTGAC---A-AAGTAC-----TAAGC-C-----TAAACCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGA--------TGCTAC-A
gi|9 : TTGTAACCATTTTCGTTACACATATC-TTAAAGTAGGAAAATTTAAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATG-CCCT--AAGTCATTGTGACCTAG-AAATACG----CAGACTTTAGTTTAAACCATTTCCA
blockSeqs : CG T AAGTA A A C CTGGCG T TCAC T TC AC ATAA GTTACTAGACTTA A A T TGTTAATT T A G TCATTAATGGAAATATT C AG TA GCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTATTAATCAGTTAACCGA T T GATATTC C CAA AC T T TTA A A CCA G T T A A T T G AAATTAAATA AGAGATTTGTAATTATTAAAAA CCATTGTATAT AA GA T CT C G C A TGC G TTTG TA TT TCTAGG A TTG T GG G GT TT A . G TC T AT A A GTCCTT . C T G A G G TAAATTAAGGAA G A T AAT C TG GCTT T C CACC G GA T CT T G C GTGGAT C T A TT TA GCAAG A T AGACC C CA G C
blockSeqs : . . . . A . . . TA . T . CTAG GCAGACTTTAGTT A G A . T . . T . TT . ATAATTATAATTCAAACAATTTTTTAAA C C T C . A . . . . C . A . A . . . T . AATTG GATTAATATA CATGTGA T . T . . T G . T G GT . AA C A TTG A . A GT T A . G TC T . A A GTCTT . . T . T G A AATGT G A G . . . . . . . . . T TA G G A . . . . . . . . . . T CA G C
blockSeqs : . . . . A . . . TA . G . AC GTACTAAACTTA A G A . C . . T . AA . ATACTAGTATAATAAACAAAGTTAAT . . . . . T . T . T . . . . . . G C . . . GT . TT . . CC T . . C . A . C . T . . . . T A A AATGT . . G . . . . . . . . . . TG T T A . . . . . . . . . . C A C G
blockSeqs : . . . . C . . . TA . A . A GCAGACAT . . T . . . . T . . . A . . . . . . . . . . . . . . TG T T A . . . . . . . . . . G A
blockSeqs : . . . A . . . TA . C . . TAAGCC . . . . . . . . . . . AG G G G . . . . . . . . . . .
blockSeqs : . . . . . . . AA . . . . . . . . .
blockSeqs : . .
blockSeqCons : TA** CG*** GCATAGACTTA****** T****************************** TG A*
originalCons : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC---A-AAATACG----TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
finalCons : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGTA--TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGACCG---AAATACGCATAGACTTA------TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTAT------------------------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AA---TT---TNTTTTGC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGC------GT--AGCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGAA-ACTCCGANTTGCATACAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 111111 666666666666666666666666666666 22222222 9999999999999999999999999999999 1 11 0000000000000000000000000000000000000000000000000000000000 11 3333333 222 11 1 1 111 1 111 1 1 1 1 1 33333 22222222 6666666666666666666666666666666666 222 11 11 1 1 222 333333333 11 333333 11 777777777777777777777 111 5555555555 11 11 333333333333 1 1 3333333333333 111 1111 1111 1 111111 11111 11111 1
lowQualScore : 11 0 5 22222 5 1 5 666666 5 7777 6 77 99 444444444444444444444444444444 7 3 1 0 99999999 6 8 8 0 1111111111111111111111111111111 0 22 33 0000000000000000000000000000000000000000000000000000000000 99 1 9999999 6 333 33 0 0 777 0 1 777 1 0 1 0 0 7 7 2 3 11111 66666666 8888888888888888888888888888888888 333 33 0 9 33 0 1 1 0 0 333 2 333333333 33 22 0 222222 3 888 1 33 7 000000000000000000000 777 0 7 8888888888 1 22 4 33 0 1 3 000000000000 0 5 3 8 8 0 0 3 3 3333333333333 5 5 5 111 6 99 4444 6 6 2222 5 77 5 77 3 1 5 999999 5 5 5 77 77 44444 6 6 66666 5 6 8 1 0
lowQualScore : .. . . ..... . . . ...... . .... . .. .. .............................. . . . . ........ . . . . ............................... . .. .. .......................................................... .. . ....... . ... .. . . ... . . ... . . . . . . . . . ..... ........ .................................. ... .. . . .. . . . . . ... . ......... .. .. . ...... . ... . .. . ..................... ... . . .......... . .. . .. . . . ............ . . . . . . . . . ............. . . . ... . .. .... . . .... . .. . .. . . . ...... . . . .. .. ..... . . ..... . . . . .
lowQualScore : 00 4 0 55555 7 4 7 444444 7 6666 7 77 22 555555555555555555555555555555 3 2 4 8 00000000 4 0 0 8 0000000000000000000000000000000 0 22 88 5555555555555555555555555555555555555555555555555555555555 33 0 3333333 7 333 22 0 0 555 0 0 555 2 0 0 0 0 3 3 0 3 77777 77777777 7777777777777777777777777777777777 000 88 2 8 88 0 0 0 0 2 000 5 555555555 88 00 8 000000 2 000 0 88 0 666666666666666666666 777 7 3 3333333333 0 00 2 88 2 0 2 555555555555 0 0 2 0 8 6 8 2 8 4444444444444 0 6 0 777 7 22 2222 7 7 1111 7 99 5 00 0 0 7 222222 7 7 7 99 99 33333 7 7 77777 2 0 8 0 2
consensus : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC-----AAAATACG-CA-TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AATT---TNTTTT---GC---GATT---AAT-AT----A-CATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGCGT--A------GCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGACAACTCCGANTTGCATACAAT
Reference ( family-355 ) : CAGGCATGTTTAC--GAAAACTTCCTAAGATTGTTCGTAAGAAATTTCTTAAGACATATC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAA-GACG-NCTT--AAGTCATTGTGAC--C--GAAATACG-CA-TAGAC-TTA---TAAACCATTTCCAGGAATAAGATAGTTCTCACTTTTGCCGTATGA--------TGCTAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGTGAANATC--AA---TCAT-AATTCTCGCATAATTCAAAC-----A---A----TTAAT-----------ATCAATAAATTTTTCTCNAGGAAN------TCATTTTAATTCCGAC---AAGATGA-TATT-CATTGCT-CTT---AAAT-TCTCTTTNAACAG---AGTTCCATTTAAT-CANTCAGAATTC-TTGAAC-CATGAAAAGAGCGTCTTGGACATTTATTGAATG-AATT---TNTTTT---GC---GATT--TAATTAT----AACATGTAC------ATGT--AAATGTT-A-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TNCATTTNTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGCGT--A------GCATCAACTGTAG--CANNAAAACCCGGACCAAAACCT-----AACTTTCACACACATCGACANA--AAAAAGGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCGGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATNAAGTTCAATTATTGTTCACGCA--CTTTCAAAATNTTCAGTATTCTGACTTTAGT-CTT------AAT-TTTCAACTAGACTAAAAT-CAGGGNATGAAAACGTTCCTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGGTGGTTGGGGTGAG------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTGCCCCGA-AACTCCGANTTGCATACAAT
gi|1 : CAGGCGTGTTAAC--GAAAACTTCCTAAGATTATTCATCAAAAAATTCTTAAGAAATATC-TTA-----GGAAAGTTTTGAAATCATCC-TAAGAATATCTTAAG-GT------G-TTTATTAAAGCTG--------G------CTAAACTAA-GACG-TCTT--AAGTCATTGTGAC-------AAT-------------------TAAACCATTTCTAGGAATATGACAGTTCTCACTTTTGCTGTGTGA--------TGCTAC-ACGCAA-TGATAATTA----------------TCAAAATGAAAATATTTA-GAAGAGTGAGTATC--AA---TTAT-AATTCTTGCAT--TT--------------A----TTCAT-----------ATCAATACATTTTTTTCGAGGTAA------TCATTTTCATTC-GAC---AAGATGA-TTTT-CATTGCT-CTT---AAAT-TCTCTTTAAACAG---AGTTCCATTTAAT-CAATCAGAATTC-TTGAAC-CATGCAAAGAGCGTCTTGGACATT-ATTAAAAG-GATT---TTTTTTTTTGC---GATT---AAT-AC----A-CATGTA----------T--AAATGTTCA-TCAACG--CTTAGAGATTTAATCCTAA--ACTAATTGCA-TTCATTTGTTTTGGCCAGT-TCAATTG--AACTAATAGTAGGGCGT--ACATGTAGCATCAACTGTAA--CAGAAAAACCCGGGCCTACACCT-----AATTTTCACACACAAAGACAGA--AAAAAGGGGAAAATGAAAAAAAAAACCTCAAACGTACGCGTCTAT-GCTTATAAATTGACGTGTACTCCGTCGGGACTAAATAAATAGCCC-----AAAGCTACTCAT
gi|1 : gATAAAGGTACATGTACAGCTAGAGCCCCGAATGATATCAAGTT--GTTATTGTTCACGCA--CTTTAAAAATTTTCTATATCCTGGCTTTAAT-TTTCATTCGAATCTTTCAACTAGACTAAAAT-TAGAGAATGAAAAATTTCCTTCACGTCTGA-TT--GATAT------GAAGATAAAACAGCTGCCTTATGGTA---TTTC-AGAAT--G----CTT-AAA-T----CCGTTTTCGG-C--AAGGAGTGG-----GAGGTG--------TGAATCTCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CAC-CAAG-----AACTACCCCGA-CGCTCC-AGTTACATAggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtataaaggtacatgtacagctagagccccgaatgatatcaagttgttattgttcacgcactttaaaaattttctatatcctggctttaattttcattcgaatctttcaactagactaaaattagagaatgaaaaatttccttcacgtctgattgatatgaagataaaacagctgccttatggtatttcagaatgcttaaatccgttttcggcaaggagtgggaggtgtgaatctcactattttgcacacactcggtcttgaaatattatgcacatcaccaagaactaccccgacgctccagttacata
gi|10 : gcaggcgtgttaacgaaaacttcctaagattattcatcaaaaaattcttaagaaatatcttaggaaagttttgaaatcatcctaagaatatcttaaggtgtttattaaagctggctaaactaagacgtcttaagtcattgtgacaattaaaccatttctaggaatatgacagttctcacttttgctgtgtgatgctacacgcaatgataattatcaaaatgaaaatatttagaagagtgagtatcaattataattcttgcatttattcatatcaatacatttttttcgaggtaatcattttcattcgacaagatgattttcattgctcttaaattctctttaaacagagttccatttaatcaatcagaattcttgaaccatgcaaagagcgtcttggacattattaaaaggatttttttttttgcgattaatacacatgtataaatgttcatcaacgcttagagatttaatcctaaactaattgcattcatttgttttggccagttcaattgaactaatagtagggcgtacatgtagcatcaactgtaacagaaaaacccgggcctacacctaattttcacacacaaagacagaaaaaaggggaaaatgaaaaaaaaaacctcaaacgtacgcgtctatgcttataaattgacgtgtactccgtcgggactaaataaatagcccaaagctactcatggttcttcaatgaatgtcgagttcaccggaacatctacggtaggtTA---TTTCCAGAAT--GGCTTCTT-AAACT----CCGTTTTCTG-CGAAAGGAG--GCTGTTGGGGAGCG------TGAATCTCATTCATTTTG-CACA-TACTGGGTCTTGAAATTTATTTAATGCACAGCAAGT-CAA-CTAGAGACCAACTGCCCTG
gi|11 : ----CTGTTTTCGG-C--AAGGAG--GTAGTGGGGAGGAG------TGAACATCACT-ATTTTG-CACA-CACTCGGTCTTGAAA--TATT--ATGCACA-----T-CTT-TAAG-----AACTGTCCCGACAACTCC
gi|12 : GATG--TATT-AGTTGCT-CTT---AAAT-TCTCTTTAGATAG---AGTTCTATTTGAT-CATTCATAATTC-TTGAAC-CATGAAAAGAc
gi|13 : ggtaatcacttaaaacaaaattaactAAAAT-CAGGGAATTAAAACGTTCCCTCAA-TCTGAGTC----------------------ACATCCATCTTTTGGCA---TTTC-AGAAT--G----CTT-CAA-TCACCCCGTTTTCAA-C--A
gi|14 : AAAATATCTTAAGCGTCTGGCGG-TTTATCAAAGCTGTCTTAGAAGTCACTCCTAAAcg
gi|16 : atttacctcatggtcatcctttaactagggGGCATGTTTAC--AAAAACTTCCTAAGATTGTTCCCAAGAAATTTCTTAAGACATATC-TTA-----GGAAAAAATTAAGATCATCC-TAAGAat
gi|18 : ACT-ATTTTG-CACA-CACCCGGTCTTGAAA--TATT--ATGCACA-----
gi|19 : TAAGAAATTTCTTAAGACATATC-TTA-----GGAA
gi|2 : CAGGCATGTTTAT--GAAAACTTCCTAAGATTGTTCATATGAAATTTCTTGAGACATATC-TTA-----GGAAAATGTTAAGATCATCC-TAGGAGTATTTTAAG-GT------G-TTTATCAAAGCGGTCTTAGGAGT-A-TCCTAAACTAA-GACG-TCTT--AAG----------------AAATACG-CA---GAC-AT----TAATCCATTTCCAGGAATGAAATAGTTTTCACTTTTGCCATATGA--------TG-TAC-ACGCTA-TGATAATTA----------------T--------------TTA-GAAGAGAGAAGATC--AA-----AT-A---CTAGTATAAT--AAAC-----A---AAG--TTAAT-----------ATCAATAAATTTTT-TCTAGAAAT------TCATTTTAAATTCGAC---AAGATGA-TATT-CATTTCT-CTT---AAAT-TCCCTTTCAACAG---GGTTCCATTCATT-CAATTAGAATTC-TTAAAT-CATGAAAAGAGCGTCTTGAACATTTATTGAATG-AATT----GTTTT---GC---GATT---AAT-AT----A-CATGTAC------ATGTGAAAATGTT-AATCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACTT--AACTAATAGTAGGGCGT--A------GCATCAACTGTAG--CATTAAAACCCGGACCAAAACCC-----AACTTTCACACACATTGATATA--AAAAGGGGGAAAATTAA----------------GT---CGTCT-TTGCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGGCCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCCCCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGT-CTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCTTTCTTTCAAGTCTGAATT--AATGT------GACGATAAAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCTCACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTGCCCCGA-AACCCTGACTTGCATACAAT
gi|3 : A-TGAAAAT-A----------------T--------------TTACGAAGAGTGATTACCTAAAGCTTCATTAAATCACTCCTAATTCAAACCTTAAATCTA----TTAATCAGTTAACCGAATAAAAAAAATTCTC-CCAGGAAGATATTCTCATTTTAATTCCAACCAAAAGATGACTATTTCATTGCTTCTTTTAAAATATCTTCTTTAACAGCCAAGTTCCATTTTATTCATTCAGAATTCATTAGACACATGAAAAGAGCGTC-TGGACATTTATT-AATGAAATTAAATATTTT---GCAGAGATTTGTAATTATTAAAAACATGTACCATTGTATAT--CAATATG-T-TCAGTGGACCTTAAG---CAACCCTAACTACCAAATACACTTCATTTGTTTTTGACAGTATCAAATTGCAACTAAGA-TAGGAATTTGA------GCATCAACTGTAGTACAAAAAAATTCGGCCCAAAACCTCTAGGAATTTTCACAC-CACC-ACAAAGGAACAAAGGAAAAATTAA----------------cg
gi|4 : atgatgctaacacggctttttatgataacttatcattta-TCAACG--CTTCGAGTTTTAATCCTAG--ACTAAATGCA-TGCATTTCTTTTGGCCAGT-TCAACT---AACTAATAGTAGGGCGT--A------GAATCAACTGTAG--CATTAAACCCCGGACCAAAACC------AACTTTCACACACATTGATATA--AAAG-GGGGAAAATTAA----------------GT---CGTCT-T-GCTTATACATTGACGTGTACTCAATCAGGAACAAATAAATGCGCCAACTTAAGGCTACCCATAAAGGTACA----------GAGCACCTAATAAAATGAAGTTCAATTATTGTTCATGCA--CTTTCAAAATATTCAGTATTCTGACTTTAGTCCTT------AAT-TTT-AACTAGACTAAAAT-CAGGGTATGAAACCGTTCCTTCAAGTCTGAATT--AATGT------GACGAT-AAACAGCTGTCTCATGGTA---TTTC-AGAAT--G----CTG-AAA-T----ACATTTTCGG-C--AAGGAGTGGTGGTTGTGGTGAG------TGAATCT-ACC-ATTTTG-CACA-CACTTTGTTTTGAAA--TACT--ATGCACA-----T-TAC-CAAG-----AGCTG-CCCGA-AACCCTGACTTGCATACAAaaaaaagtaaaccaagatatttataaagtgtctatgctatataaat
gi|5 : CAGGCATGTTTAC--GAAAACTTTCTAAGATTGTTCGTAAGAAATTTCTTAAGACATACC-TTA-----GGAAAATTTTAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGTTGTCTTAAGAGT-A-TCCTAAACTAA-GACA-GCTT--AAGTCATTGTAACATA--AAAATACG-TACTAAAC-TTA---T-AACCATTTCCAGGAATAAGATAGTTCACAC-TTTGCCGTATGATGTTAATTTGTTAA-ACGCTA-TGATAATTA----------------T--------------atc
gi|6 : tcatacgtgatattgtcgtacgctagtgcttgtttggcaatgttgtcgacagtctcgttgccttgaatgccgacatgtgaaggtacccattgaaaatggatttgttgattagattgtgtggattgatgtatgaggatgaggacgatattgagtagatctgGGCATGTTTACCGAAAAACTTCCTAAGATTGTTCGCA-GAAATTTCTTAAGACATATCTTTA-----GG--AATTTTAAGATCATCCATAAGAATATCTT-AG-GT------GTTTTATCAAAGCTGTCTTAGGAGT-A-TCCTAAACTAATAACATCCTT--AAGTCATTGTAAC--A--CAAATACGTTACTAGAC-TTA---T-AACCATTTCCAGGAATAA-ATAGTTCACACTTTGCCCGTATGA--------TGTTACAACGCTAGTGATAGTTATCATTAATGGAAATATT--------------TTA-GAAGAGTGAAAATC--AA-----AT-AATT-----ATAATTCAAAC-----A---ATTTTTTAAA-----------ATCTATAAcataa
gi|7 : AAATCAAAT--AATTATAATTCAAACAATTTTTTAAAATCTATAAT-TTTTCATTTGA-----T------AAC-TTTCAGC--GACTGAAATGCAGTG-ATGAAAACGT-CATTCAAAT-TGAATTTAAAT-TAAGGAAGAC-ATAAAAGA-CTGTCTCATGGTAAATTCTC-AGAATTGG----CTTTAAA-T----CCGTTTTCGGGC--GAGGAG-GGAGGTGGGGGTGGGGTGGATTGAACCTCACT-ATTTTGTCACAACACTCGGTCTTGAAA--TATT--ATGCACA-----TACACTTAAG-----AATTGGCCCGACAACTCCCAGTTTAATACAAT
gi|8 : AGAAATTACCTAATACATATC-TTA-----GGATTATTTTGAGACCATCT-TAAGATTATCTCCTT-CT------G-TTTATCAAAGCTTTGTTAAGAGT-A-TCCTAAACTAA-GACA-ACTTACAAGTCACAGTGA---C--AAAGTAC-----TAAGC-C-----TAAACCATTTTCAGGAATCAGATAGTTGTCA-TTTTGCCATATGA--------TGCTAC-A
gi|9 : TTGTAACCATTTTCGTTACACATATC-TTAAAGTAGGAAAATTTAAAGATCATCC-TAAGAATATCTTAAG-GT------G-TTTATCAAAGCTGTCTTAGGAGA-A-TCCTAAAGTAA-GATG-CCCT--AAGTCATTGTGAC--CTAGAAATACG-C---AGACTTTAGTTTAAACCATTTCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGTGCCCTAAAAATGTATTGTGACTCCACGATATTCCGTGTTGATTTTTATTGAGAACAGATGTCTTGGTGTCAAAAGCTTG
Unaligned ( gi|17 ): TATTGAATAAGAGAATAAATGTATAATATTCATAACATATA