lowQualScore : 1111111111111111111111111111111 111111111111111111111111 111111111111111111111
lowQualScore : 111111 111111 555555555555555555555555555555 11 1111 111 1 33333333333333 111 333333333 111111 222 222222 222 111 1111 1111111 111111 11 11 222222222222222 111111 11 11111 111111 1 11 1 2222222222222 11 1111 22222222222 11 1 222 111 2222222222222222222222222222222 222 4 11 11 222222 444444444 1 111111 111 11 111 11 2222 2222 1 44444 999999999999999999999999 2 2 1 2 555555555555 22 44 222222222222222222222 11 555555555 1 22 2 22 55555555555555555555555 22 1 2
lowQualScore : 2 2 777777 2 2 999999 999 33 777777777777777777777777777777 44 66 3333 000 55 3 55 3 0 3 0 55 11111111111111 3 55 3 55 88 55 3 4 4 8 666 3 55 3 3 000000000 9 3 6 333333 44 6 44 3 444 3 444444 3 3 33 1 77 3 55 5 222 3 55 2 55 22 111 8888 3 3 55 7 3 44 3 3 7777 3 55 9999999 4 4 4 4 66 2 55 555555 00 88 7 555555555555555 3 99999 3 111111 3 3 555 3 3 44 777777 555 3 66 77 6 11111 3 3 44 3 77 55 77 55 4 000000 1 5 5 66 0 5 0 9999999999999 22 999 5 5 2222 5 5 77 77777777777 5 5 33 1 5 333 000 5 77 6 1 88 6 7777777777777777777777777777777 555 6 0 1 11 11 000000 222222222 6 6 2 5 555555 5 77 1 000 00 99 2 888 6 55 0000 6666 8 1 5 00000 333333333333333333333333 0 0 5 0 777777777777 888 77 33 333333333333333333333 4 88 888888888 5 22 0 77 66666666666666666666666 77 5 2 0
lowQualScore : . . ...... . . ...... ... .. .............................. .. .. .... ... .. . .. . . . . .. .............. . .. . .. .. .. . . . . ... . .. . . ......... . . . ...... .. . .. . ... . ...... . . .. . .. . .. . ... . .. . .. .. ... .... . . .. . . .. . . .... . .. ....... . . . . .. . .. ...... .. .. . ............... . ..... . ...... . . ... . . .. ...... ... . .. .. . ..... . . .. . .. .. .. .. . ...... . . . .. . . . ............. .. ... . . .... . . .. ........... . . .. . . ... ... . .. . . .. . ............................... ... . . . .. .. ...... ......... . . . . ...... . .. . ... .. .. . ... . .. .... .... . . . ..... ........................ . . . . ............ ... .. .. ..................... . .. ......... . .. . .. ....................... .. . . .
lowQualScore : 7 7 999999 5 7 333333 666 77 111111111111111111111111111111 66 88 8888 000 00 6 99 6 8 6 9 00 77777777777777 6 00 6 00 22 00 6 0 0 0 555 6 00 6 3 222222222 2 3 7 666666 66 7 66 3 222 3 888888 3 3 88 8 88 3 00 0 777 6 00 8 00 22 777 7777 6 6 00 3 6 99 6 6 7777 6 55 3333333 0 0 0 1 88 1 00 111111 55 99 3 888888888888888 6 11111 6 444444 3 2 888 3 3 66 222222 888 3 22 99 3 77777 3 3 66 6 00 55 00 55 0 222222 4 0 0 99 5 0 9 1111111111111 99 444 7 7 1111 7 7 99 11111111111 7 7 66 4 7 666 000 7 99 7 0 33 0 2222222222222222222222222222222 000 0 0 4 00 00 222222 555555555 7 7 9 7 333333 7 99 7 000 99 22 2 333 7 88 2222 5555 0 0 5 00000 555555555555555555555555 0 0 5 0 000000000000 555 55 00 000000000000000000000 0 55 555555555 0 55 0 55 00000000000000000000000 55 0 5 0
consensus : ACCGGGTATCCGGAT-CCAACGT-CC-CGCG-GAGGGAT-CCAAAG-C--CC-G-CGGAG--CCA-------AATTCAAAA-AAA--CAAAA-AACATC--GTTCTTAGCAN-G-TA---GG--AATA-ATC-TT-ATTTTTC-AT-ATACT--TTTNN-----CANT---TTT-TCCTGAT--G-AC--AAATT-TA--TT-TGAT-GAA-C-TTTGCAATGN--TT-A--A-GCTTTAA-T--TN-----AAAACAAT-CG-C----C-AT--T-AAAA--TTGATG-AAAG-ATT-AACG-AN--AGT-A-GC-AAACAA-TGAA-CTG--ACAAT-TT-T--CATTTCAAAAAC--CCGAA-T-TTAT-N--A-GTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-T-ACCT-TGAGTCCTTTTTT--GCCA--TC-AAAT-GATAG-ATTG-ATATA---T---------CCC-T-----AAT-T---A--TT-TGTNA---A-A-AG--GT-C---GAAA---CC-AAAGTCCCAC-CCGT-C---GCTTCAAAA-TTTGC-G--AAG-TT-CA--TTGAAGGG--G-TA----G-AAAAAT-T-TTGGATCCA-GTAAA-CCACGGAGCAA-G-TTTT-C----AAAT-GAT-CCAT-A-A----A-ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCGG---A-GCAAC--TTAGTTTTATA-TCTAGGAAATCAGCTGACAAATGCGGCTT-----CTGTTTTAGATGATAAACAGTTTTNNNTTGTTTGCTTATTCTATCTTCTTTTTTA--CAGTTTT--CA-TA-G-TGATC-T--TTCC-AGA-GAA-TTATA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTG--TNAAATAT-AT-GGGG-ACGTAGGGGTGATATTTTGATATTCGCAATTTGGAGAGGA--TTGTCATNCANGACTTGTTTTACTTGTATTGTAATGTGCTGGTGGGCATGCGTCNTTAACCCCAGAGNNNTGGAACTAAT-ATGCCTCTCCATGCTTACACCAAATACGATTCAATAGTNCCAAATTACCAACAATAATAACATGNGGTAATTTGATCCTATTGTTCCATCGTTGGTNAAAAGTCATCTGATACGGTTCCTGNACATA
Reference ( gi|1 ) : ACCGGGTATCCGGAT-CCAACGT-CC-CGCG-GGGGGAT-CCAATG-A--CC-A-CGGAG--CAA-------AATTAAAAA-AAA--CAAAA-AACATC--GTTGCTAGCAG-A-TA---GG--AATA-ATC-TT-ATTTTTC-AT-ATACT--TTTTC-----CAAT---TTT-TCCTGAT--G-AC--AAATT-CA--TT-TGAT-GAA-C-TTTGCAATGA--TT-A--A-GCTTTAA-T--TA-----AAAAAAAT-CG-C----T-AT--T-AAAA--TTGATG-AACA-ATT-AACA-AA--AGT-A-GC-AAACAA-TGAA-CTG--ATAAT-GT-T--CATTTCAAAAAC--CCGGA-T-TTAT-T--A-GTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-T-ACCT-CGAGTCCTTTTTT--GCCA--CC-AAAT-AATAT-ATTG-ATATA---T---------CAC-T-----AAT-T---A--TT-TGTTA---A-A-AG--GT-C---GAAA---CC-AAAGTTCCAA-CTGT-C---GCTTCAAAA-TTTGC-G--AAG-TT-TA--TTGAGAGG--G-TA----G-AACAAT-T-TTGGATCC--GTAAA-CCAAGGAGCAA-G-TTTT-C----AAAT-CAT-CCAT-A-A----A-ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCGG---A-GCAAC--TTAGTTTTATA-TTTAAGAAATCAGCTGACAAATCCGGCTT----GTTGTTTT---T--T-----GTTTTTGTTTGTTTGTTTATT-TATTTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC-TG-TTAC-AGA-GAA-TAATA-AATAAAAT--C--T-TAC--ATTCTAT---TT-GGGA--AAAATCGC---GA-TT--TGTG--TCAAATATCAT-GGGG-ACATAGGGGTGATATTTGG---TTTGCAATT-------GATATTTTC--CCAT--TTTG-TTTAC-TGTATTGTAATG-GCTGGTGGACATG-GT-ATT-----CAGAGCAATGG--CTAATAATGCCT-------------TCAA----GATTCAATAGTTCCAAATT----AC---AATAACAT-CGAT-ATT--ATCCTA-----CCATCGT--GTAA-----TATC--ATATGGTTCCTGCA-ATA
gi|5 : ACCGGGTATCCGGAT-CCAACGT-CC-CACC-TAGGG-T-CCAA------CC-C-CGGAG--CCA-------AATT-----------CAAAA-AACATC--GTTCTTAGCAATG-TA---GG--AATA-ATC-GT-ATTTT-C-AT--TACT--TTTGA-----CAGC---ATT-TTCCGA---G-AC--AA-TT-TA--TT-TGATTGAA-C-TTTGCAATG---TT-A--A-GCTTTAA-T--TCT----AAAACAAT-CG-C----C-AT----AAAT--TTGATG-AAAG-ATTTAACG-AC--AGT-A-GC-AAACAA-TGAA-CTG--ACAA--ATAT--CGTTTCAAAAAC--CCGAA-A-TTTT-T--AAGTTCA-AAA--C-AC-ATTTAGC-A-T----AG-AA--TTG-------CT-GC-T-ACCT-TGAGTCCTATTTT--GCCA--TC-AA-T-GATAG-ATTG-ATATA---T---------CCC-T-----AAT-T---A--TT-TGTGA---A-A-TG--GT-C---GAAA---CCAAAAGTCCCAC-CCGT-C---ACTTCAAAA---TGC-G--AAG-TT-CA--TTGAAGGG--G-TA----G-AAAAAT-T-TTGGATCC--AGAAA-CCACGGAGCAA-GTTTTT-C----AAAT-GAT-CCAT-A-A----A-CAA-CGGAG--CA-----------ATGTA-T--CCTG-A-TAA---CAC-G---A-GCAAC--TTAGTTTTATA-TCTAGGAAATCAGCTGACAA
gi|7 : ACCGGGTATCCGGAT-CCAACGT-CN-NNNN-NNNNNNN-NNNNNN-N--NN-N-NNNNN--NNN-------NNNNNNNNN-NNN--NNNNN-NNNNNN--NNNNNNNNNNN-N-NN---NN--NNNN-NNN-NN-NNNNNNN-NN-NNNNN--NNNNNNNCGACACT---TTT-TCCTGAT--G-AC--AAATT-TA--TT-TGAT-GAA-C-TTTGCAATGT--TT-A--A-GCTTTAA-T--CT-----AAAACAAT-CA-C----C-AT--T-AAAA--TTGATG-AAAG-ATT-GACG-AC--AGT-A-GC-TAACAA-TAAA-CTG--ACAAA-TT-T--CATTTCAAAAAC--CCAAA---TTAT-TA-A-GTTCA-AAA--C-AC-ACT-AGC-A-T----AG-AA--ATG-----A-CT-GC-T-ACCT-TGAGTCCTGTTTT--GCCA--TC-AAAT-GATAG-ATTG-ATATA---T---------CCC-T-----AAT-T---A--TT-TGTTA---A-A-AG--GT-C---GAAA---CC-AAAGTCCCAC-TCGT-C---ACTTCAAAA-TATGCGG--AAG-TT-CA--TTGAAGGG--G-TA----T-AAtgtgggttttaacagtttttaaacaatcagagaattatgaataaaatttacattctgtatattgggaaaaatcgcgattaatatgttctattgtcatgaaatacttttagcacaacgctgt
gi|16 : cACCGGGTATCCGAAT-CCAACGT-CC--ACG-GAGGGAT-CCAAAG-C--CC-G-CGGAG--CCA-------AATTTAAAA-AAA--------AACATC--GTTTTTAGCAT-G-TA---GG--AATA-ATC-TT-ATTTTTC-AT-ATACT--TCTGA-----CACA---TTT-TCCTGAT--G-AC--AAATT-TA--TT-TG
gi|22 : ACCGGGTATCCGGAT-CCAATGT-CC--ACG-GAGGGAT-CCAATG-A--TC-G-CGGAG--CAC-------AAgatcactccgtggtttacggatccaaaa
gi|2 : CCAGTTATCCGGAT-CCAACGT-CC--GCA-GAGAGAT-CCAATG-A--CC-G-CGGAG--CAA-------AATTTAAAA-AAA------A-AACATC--GTTTATAGCAG-G-TA---GG--AATA-ATC-TT-ATTTTTC-AT-ATACT--TTTTA-----CACT---TTT-TCCTGAT--A-AC--AAATT-TA--TT-TGAT-GAA-A-TTTGCAATGA--TT-A--A-GCTTTGA-T--TT-----AAAGCAAT-CG-C----T-AT--T-AAAA--ATCATT-AA---ATC-AACG-AC--AGT-A-GC-AAA--------------A-AAT-GT-T--CATTTCAAAAAC--CCGAA-T-TTAT-A--A-GTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-T-ACTT-TGAGTCCTTTTTT--GCTA--TC-AAAT-GATAG-ATTG-ATATA---T---------CCC-T-----AAT-T---A--TT-TTTTA---A-A-AG--GT-C---GAAA---CC-AAAGTCCCAC-CCGT-C---GCTTCAAAA-TTTGC-G--AAG-TT-CA--TTGAGAGG--G-TA----G-AAAAAT-T-TTGGATCC--GTAAA-CTACGAAGCAA-GTTTTT-C----AAAT-GAT-CCAT-A-A----A-ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCGG---A-GCAAC--TTTGTTTTATA-TTTAAGAAACCAGCT
gi|4 : CCGGGTATCCGGAT-CCAACG--AC-CGCG-GAGGGAT-CCAAAG-C--CT-G-CGGA------------------------------------CATT--GTTCTTAGCAG-GGTA---CG--GATGCATC-AT-ATACTTC-A--ACACT--TGTTT-----C-----------CCTGAT--G-AC--AAATT-TA--TTGTAGT-GAAAC-TTTGCAATGC--TTTA--A-GCTTTAA-TCCTA-----AAGACAAT-CGGC----TCAT--TTGAAA--TTGATG-AAAG-ATT-AACGTAC--AGT-A-G--AAA-GA-TG---------CAAT---------TTCCAAAATC--CCGAA-T-TTTT-A--A-GTTCA-AAAATC-ACTAAT---C-A-T----AG-AA--G-------A-CT-GC-TTACCTATGAGTTCTTTTTT--GCCAGGCT-AAAT-GATAGGATTGCATATA---T---------CCC-T-----AAT-T---GAGTT-GGTTA---A-AGAG--GT-CAGCGAGATATCC-AAAGTCCCAC-CCGT-CATCGCCTTAAAACTTTGC-G--AAGATT-CA--TCAAGCGGAGG-TACCAAA-AAAAAA-A-TTGGATCCA-GTTAA-ACACGGAGCAA-G-TTTTTC----AAAT-GATGCCAT-G-ACAAGATACA-CGAAGGTCA-----------ATG-A-TG-CCTG-A-TAAT--CGCGGCCGA-GCAAC--TTAGTTTTATAATCTAGGAAATCAGCTGACAAATGTGGTTT-----TTATTTttttacagttttcatagtgatcttttccagagaattataaataaaaccttacattctgtttgggaaaaatcgcgatttgtgtgaaatatataggggacgtaggggtgatattttgtttgcaattttgtcatccaggacttgtttactgtattgtaatggctggtgggcatggttttcagagcaatggctaatatgccttcaagattcaatagttccaaattacaataataacatcgatattatcctaccatcgtgtcatatcatacggttcctgaaata
gi|3 : CGGGTATC--GAT-C-AACGT-CC--GCACGGGGGAT-CCAA-G-AAGCC-A--GGAG--CAATATATTTAAGTAAAAATAAA--CAAAA-AACATC--GTTGCTA-CAG-A-TACGTGA--ACTT-ATCTTT-ATTTGTCAATAATACTAATTTACA----CAAT---TTTATGCTGAT--G-A---AAATT-CA---T-TGAT-GAA-C-TTTGC-ATGAAGTC-GACA-GTTTTAATT--TATGATCAAAAAAAT-CG-CCTCAT-ATGAT-AAAT--TTGATG-AGCA-TTT----A-AA--AGT-A-G--AAACAACTGAA-CTG--ATAATGGT-T--CATTTTCAAAACAACCGGATT-TTATGTAGA-GTTAC-AAA--C-AC-AA--AGC-ATT----AG-AA--GTG-------CT-GC-T-A-CT-CG-GTCCTTTTTTTAGCCA--CCAAAATGAATAT-ATTGTATATAT--T---------CAA-T-----AAT-T---A--TTATGTAT---A-A-AG--GT-C----ACA---C---AGGTTC--A-CTGT-----G-TTCAAAA-TTTGC-G---AG-TT-TA--TTGAGAGG--C-TA----GAAACATT-TGTTGGACTC--AAGAACCCAAGGAGCTA-G-TTTT-CAA--AAAT-CAT--CAT-ACA----A-ACA-CGCAT--CA-----------ATG-ACT--CCTGAA-TAA---CGCGG---AGGCAACTGTTGTTTTTATA-TTT-AGAAGTGATC-G--AAATTCGTCTTATGAGCTGTGGTAGATGAT-----GTTTTGTTTTGTTTGCTTATTCTATCTTCCCTGTTC--CTCTTTTAACA-CA-GCTTTTC-T--TCAT-AG----A-T-ATG-AATATAA---C--T-TA---ATTCTAT---TT-aacagttttcatgtgtgatcgtgtttccagagaattaataaatatagtaatttgcttctgtttggggaaaaattgcaactttgtattaaatatatagggggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|15 : catctaaatcgcaggcaagtcatcttagaaacaCGGGTATTCG-ATGCCAAGGTACC-CG----AGGGAT-CCAAAGCG--CC-GGCGGAG--ACA-------AATTC----------CAAAACAACATC--GTTCTTAGCAT-G-TA---GG--AATA-ACT-CT-ATATTTT-ATTATACC--TTATA-----CACA---TTT-TCCT-AT--GGAC--AG-TT-TA--TT-TGAT-AAA-C-TTTGCAATGT--TT-A--A-GCTTTAA-TC-T--------AAAACTCCG-C----C-AT--T-AAAA--TTGATGAAAGA-ATT-AACG-GACTAGT-A-GCAAAACAATTGAA-CT
gi|10 : GGGTATCCGGAT-CCAACGT-CC-AACG-GAGGGAT-CCAAAG-C--CC-G-CGGAG--C-C-------AATT-----------CAAAA-AACATC--GTTCTTAGCAT-G-TA---GG---ATA-ATC-TT-A-TTTTC-ATAATAC-----TTC-----CGACACATTT-TCCTGATAGA-AC--AAATT-TAATTT-TGAT-GAA-CTTTTGCAATGT--TT-A--A-GCTTTAA-T--CT-----AAACCAAT-CG-T----C-AT--T-AAAA--TTGATG-AAAA-TTT-AACG-AGC-AGT-A-GC-AAACAA-TGAA-CTG--ACAAA-TT-TCCCATTTCAAAAAA--CCCGA---TTAT-TA-A-GTTCA-AAA--CAAC-AAC-AGC-A-T----AGAAA--GTG-----G-CT-GC-T-AACT-TGAGTCC-TTTTT--GCCA--AT-CAAT-GATAG-ATTG-GTATACTCC---------CACAT-----AATATTAAA--TT-TGTGG---A-A-AG--GT-----GAGA----G-AGAG----AG-C-GT-C---ACTTC--AA-TTTGC-G--
gi|6 : GGTATC-GGAT-CCAACGT--C-CACG-GAGGGATGCCAA-G-C--CC-G-CGGAG--CCA-------AATC-------------AAA-AACATC--GTTCTTAGCAT-G-TA---GA--AATA-ATC-TTGA--TTTC-AT-ATACT--TCGACA----CAA----TTT-TCCTGAT--G-AC--AAATTATA--TT-TGAT-GAA-C-TTT-CAATGT--TT-A--ATGCTTTAA-T--TA-----AAAACAAT-CGCC----C-AT--T-AAGATCTTGATG-AAAAGATT-AACG-AC--AGTGA-GC-CAACAA--GAT-GCG--ACAAT--T-C--CATTC--AAAAC--CC-GA-TATTAT-T--A-ATTCA-AAA--C-AC-AAT-AGC-A-T----AG-AGATGTG-----G--T-GC-T-ACCT-TTAGTCCTTTTTT--G-CA--C---AAT-GATA--ATTG-A---------------------T-----AAT-T---C--CC-TG-----------------------AA---CC-AAAGTCCCAC-CCGT------CTTCAAAA-TTT-C-G--AAG-TT-CA--TTGAAGGG--G-TA----G--ACAATCT-TTGGATCCAGATAAC-CCGGAAAGCAATG-ATTT-CTCGAAAATGCAT-TCCTAA-A----A-ACACCGGAG--CA-----------ATG-A-TACCCTG-ATTAACTGCGTGA---A-GCAAC--TTAGTTTTATA-TCT-GGAAATCAGCTGACAA
gi|9 : GGTATCCG-AT-CGACCGT-CT-CG----GAGGAT-C--ATG-A--CCTG-CGGAG--AAA-------AACCAAAAA-AAAAGCAAAA-A-CAT---GTTTTTAGCAG-G-CA---AGGAAATA-ATC-TT-ATTTTTC-AT-ATACT--TTTTA-----CACT---TTT-CCCTGAT--G-----AAATT-TA--TT---GT-GAA-CATGTGAGATTA--TT-A--A--CTTTAG-TC-TA-----GAAACAAT-CG-C----A-TT--T-AAAA--TTGATG-AAAAGATT-AAC--GA--AGT-A-AG-AA-------AA-CTG--AT--T-TT-T--CA-TTAAAAAAC--C--AA-T-TTAT-A--A-GTTC--AAA--C-AC-AA--AAC-A-CGAGGAG-AG--ATGTATATA-CTAGC-T-GTTT-TGA-TCC-TTTTT--GTCA--TC--AAT-GATGG-ATTG-ATATAG--T---------C-C-T-----AAT-T---A---T-TGTTATTTACA-AG--AT-T---GAAA---CC-AAGTCTCCAT-CCGT-C---GC-TCAAAA-ATTGC-G--AAG-TG-CA--TTGA-AGG--G-tgtggtgtttaaaacaattccaaagaatttaaataaaatcttacatctgtttggaaaaattccgattatatgaaatagggacgtttaatcaatgcaatacttttagcgaaacgctgac
gi|21 : cGGTATCCGGAT-CCAACGT--C-CAC--GGAGGAT-CCAAAG-C--CC-G-CGGAG--CCA-------AATTCAA
gi|19 : GGCATCCGGAT-CCAACGT-CCACG-G-GAGGGAT-CCAA-G-C--CC-G-CGGAG--CCA-------AATTCAA
gi|18 : ccTCAGAGT-CCAACGT-CC--GCG-GAGGGAT-CCAATG-A--CC-G-CGGAG--C--------------AAAA-AAC--CAAGG-AACATCGTGTTTTTAGCAG-
gi|8 : CCGGAT-CCAACGT-CC--ACG-GAGGGAT-CCAAAG-C--CC-A-CGGAAGCCCA-------AATTCAAAA-A----------AACATC--GTTCTTAGCAT-G-TAC--GG--GATA-ATC--T-ATTTTTC-AT-ATACT--TTGAC-----ACAT---TTT-TCCTGA---G-ACCAAAATT-TA--TT-TGAT-G-A-C-TTTGCAATG---TT-A--A-GC-TTAA-TC-TA-----AAACAAAT-CG-C----C-AT--TAAAAA--TTGATG-AAAG-ATT-AAC--GC--AGT-ATGC-AAACAA-TGAAGCTGTAACAAA-TT-C--CATTTCAAAAAC--CCGA----TTAT-T--A-AGTCATAAA--CAAC-AAT-AGCAA-T----AG-AA--GTG-----GCCT-GC-T-ACCT-TGAGTC---TTTT--GCCA--TC-AAAT-GATGA-CTTG-AT-TA---T---------AAC-TCCCTAAAT-T---T--TT-TGTGA---G-A-AACTGT-C---GAAA---CC-AGAG-TCCAACCCGTCC---ACTTCAAAA-TTTGC-GGCAAG-Tt
gi|14 : tatctcATGA--TT-A--A-GCTTTGA-T--CT-----AAAACAAT-CG-C----C-AT--T--AAA--TTGATG-AA-G-ATT-AAC--GA--CGT-A-GC--AATA---GAA-CTG--ATTTT-TT-T--CATTT-AAAAAC--CCGAA-T-TTAT-A--A-GTT-A-AAG--C--C-AAT-A-C-A-T----GG-AA--GTG-----A----GCGT-A--T-CGAGT-CTTATTT--GTCA--T---AATGAATGG-ATTG--TATA---TCTAATTTGACAC-T-----AAT-T---ATTTT-TGTTA---C-A-AG--ATGC---G-AA---CC--AAGT--CA---TGT-----G-TTCAAAA-TTTGC-G--AAG-TTCTA--TTGAAGGG--G-TA----G-AAc
gi|17 : CTTTAA-T--CT-----AAAATAAT-CG-C----C-AT--T-AAAA--TTTGTG-AAAG-AAT-AACG-AA--AGT-A-GC-AAACAA-TGAA-CTG--ACAAA-TT-T--CATTTCAAAAAC--CCGAA-T-TTTA-A--A-GTTCA-AAA--C-AC-AAT-AGC-A-T----AG-Aaa
gi|13 : AGTCCTTTTT---GCCA--TC-AAAT-GATAG-ATTG-ATATA---T---------CCC-T-----AAT-T---A--TT--GTGA---A-A-TG--GT-C---GAA----CC-AAAGTCCCAC-CCGT-C---ACTTCAAAA-TTTGC-G--AAG-TT-CA--TTGAAGGG--G-TA----G-AAAAAT-T-TTGGATCCA-GAAAA-CC---GAGCAA------------------------AG-A-A----A-CCA-CGGAG--CACTCATTCACTTATG-A-T--CCCA-A--AATC-CACGG---A-GC-TT--TTAGTCTTg
gi|11 : tt---A--TT-TGTTA---A-A-AG---T-C-----AA---CG-AAAGTCCCA--CCGT-C---GCTTCAAA--TTTGC-G--AAG-TT-CAAATTGAAGGG--GCTA----A-AA-AAT-T-T-GGATCC--GTAAA-CCACGGGACAA-G-TTTT-TCA--AAAT-GAT-C-AT-A-A----A-ACA-CGGAG--CA-----------AT--A-T--CCTGAA-TAA---CACGG---A-GCAAC--TTAGTTTTATA-TCTAGGAAATCAGCTGTCAAGTGTGG----------GTTTT---T--TAAACAGTTTTCAATTGTttctatcaacattcaccgtacactaatgattctggatgacttgtatgtttattcaaaacatatgggatatccaat
gi|16 : T-T-TTGGATCC--GTAAA-CCACGGAGTGA-----TC-C----AAAT-gatcttaccagaagaattataaataaaatcttacattctgtttaggaaaaattgcggatttgtatgaaatatataggggactgttctaatcgtgaaatactctcagcataaca
gi|4 : accgggtatccgaatccaacgtccacggagggatccaaagcccgcggagccaaatttaaaaaaaaacatcgtttttagcatgtaggaataatcttatttttcatatacttctgacacattttcctgatgacaaatttTTTTTATTTAA--CAGTTTT--CA-TGTG-TGATCGTGTTTCC-AGA-GAATTAATA-AATATAGTAAT--T-TGC---TTCTGT---TTGGGGA--AAAATTGC---AACTT--TGTA--TTAAATAT-AT-AGGG-
gi|11 : ccgggtatccggatccaacgaccgcggagggatccaaagcctgcggacattgttcttagcagggtacggatgcatcatatacttcaacacttgtttccctgatgacaaatttattgtagtgaaactttgcaatgctttaagctttaatcctaaagacaatcggctcatttgaaattgatgaaagattaacgtacagtagaaagatgcaatttccaaaatcccgaatttttaagttcaaaaatcactaatcatagaagactgcttacctatgagttcttttttgccaggctaaatgataggattgcatatatccctaattgagttggttaaagaggtcagcgagatatccaaagtcccacccgtcatcgccttaaaactttgcgaagattcatcaagcggaggtaccaaaaaaaaaattggatccagttaaacacggagcaagtttttcaaatgatgccatgacaagatacacgaaggtcaatgatgcctgataatcgcggccgagcaacttagttttataatctaggaaatcagctgacaaatgtggTTTTTTAAACAGTTTT--CAATT-G-TGATC-T---TACCAGAAGAA-TTATA-AATAAAAT--C--T-TAC--ATTCTGT---TT-AGGA--AAAATTGCG--GA-TT--TGTA--TGAAATAT-ATAGGGG-ACggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|2 : atttgttaaaagtcaacgaaagtcccaccgtcgcttcaaatttgcgaagttcaaattgaaggggctaaaaaatttggatccgtaaaccacgggacaagtttttcaaaatgatcataaaacacggagcaatatcctgaataacacggagcaacttagttttatatctaggaaatcagctgtcaagtgtgggTTTTTA--CAGTTTT--CA-TA-G-TGATC-TT-TTCC-AGA-GAA-TTATA-AATAAAAC--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTG--TGAAATAT-ATAGGGG-ACGTAGGGGTGATATTTTG---TTTGCAATT-----------TTGTCATCCAGGACTTG-TTTAC-TGTATTGTAATG-GCTGGTGGGCATG-GT-TTT-----CAGAGCAATGG--CTAAT-ATGCCT-------------TCAA----GATTCAATAGTTCCAAATT----ACAATAATAACAT-CGAT-ATT--ATCCTA-----CCATCGT--GTCA-----TATC--ATACGGTTCCTGAA-ATAtgttctaatcgtgaaatactctcagcataaca
gi|5 : ccagttatccggatccaacgtccgcagagagatccaatgaccgcggagcaaaatttaaaaaaaaaacatcgtttatagcaggtaggaataatcttatttttcatatactttttacactttttcctgataacaaatttatttgatgaaatttgcaatgattaagctttgatttaaagcaatcgctattaaaaatcattaaatcaacgacagtagcaaaaaatgttcatttcaaaaacccgaatttataagttcaaaacacaatagcatagaagtgactgctactttgagtccttttttgctatcaaatgatagattgatatatccctaattattttttaaaaggtcgaaaccaaagtcccacccgtcgcttcaaaatttgcgaagttcattgagagggtagaaaaattttggatccgtaaactacgaagcaagtttttcaaatgatccataaaacacggagcaatgatcctgataacgcggagcaactttgttttatatttaagaaaccagcTTTTAA--CAGTTTT--TA--A-A-CAATC---------AGA-GAA-TTATG-AATAAAAT-----T-TAC--ATTCTGTATATT-GGGA--AAAATCGC---GA-TTAATATGT-TCTATTGTCAT-G
gi|6 : accgggtatccggatccaacgtcccacctagggtccaaccccggagccaaattcaaaaaacatcgttcttagcaatgtaggaataatcgtattttcattacttttgacagcattttccgagacaatttatttgattgaactttgcaatgttaagctttaattctaaaacaatcgccataaatttgatgaaagatttaacgacagtagcaaacaatgaactgacaaatatcgtttcaaaaacccgaaatttttaagttcaaaacacatttagcatagaattgctgctaccttgagtcctattttgccatcaatgatagattgatatatccctaattatttgtgaaatggtcgaaaccaaaagtcccacccgtcacttcaaaatgcgaagttcattgaaggggtagaaaaattttggatccagaaaccacggagcaagtttttcaaatgatccataaacaacggagcaatgtatcctgataacacgagcaacttagttttatatctaggaaatcagctgacaatgtggg-TTCC-AAA-GAA-TT-TA-AATAAAAT--C--T-TAC--A-TCTGT---TT--GGA--AAAATTCC---GA-TTA-TATG----AAATA------GGG-ACGTaaatacttttagcacaacgctgt
gi|12 : ggtatcggatccaacgtccacggagggatgccaagcccgcggagccaaatcaaaaacatcgttcttagcatgtagaaataatcttgatttcatatacttcgacacaattttcctgatgacaaattatatttgatgaactttcaatgtttaatgctttaattaaaaacaatcgcccattaagatcttgatgaaaagattaacgacagtgagccaacaagatgcgacaattccattcaaaacccgatattattaattcaaaacacaatagcatagagatgtggtgctacctttagtccttttttgcacaatgataattgataattccctgaaccaaagtcccacccgtcttcaaaatttcgaagttcattgaaggggtagacaatctttggatccagataacccggaaagcaatgatttctcgaaaatgcattcctaaaaacaccggagcaatgataccctgattaactgcgtgaagcaacttagttttatatctggaaatcagctgacaatgtggtgtttaaaacaaAATACAATAAAGT--CGATATACCCATTTTAA---TT-TGGACTAAAATGGCACAGA-TT--TGTGTGTCAAATATCAG-GGAGCATATAGGGGTGA-ATTTTGATATTCGCAATTTGGAGAGGA---------GCAT--TTTGTTTTACTTGTA-TGTAATGTGCTGGTGGACATGCGTCATTAACCCTAGAGGCCTGGAATTAAT--TGCCTCTCCATGCTTACACCAAATACGATTCAATAATACT--ATTACCAAC---AATAA-ATGAGGTAATTTGATCCTATTGTTCCATAATTGGTAAAAAGTCATCTGATATGGTT-CTGCACATAttaatcaatgcaatacttttagcgaaacgctgac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): GCTTCTGATGTGACTTGTGTATTCCTCATCCACATTCCACTAAAACAGTACTACC
Unaligned ( gi|23 ): TTCATATACTTCTCAGCAATTTTATTAGAAAATCTA
Alignments
lowQualScore : 11111111111111111111111111111 11111111111111111111111
lowQualScore : 11 1111111111111 33333333333333333 11111111 11111 11 111111111111 11111 111 1111 1111111 1111111111111 1 111 1111 1111 1111 22222222222 11 1 222 1 11111111111111111111111111111 1 11 1111 11111111 11111 111 111 2222 333 00000000000000000000000 2 2 2 555555555555 33 888888888888888888888888888 2222 33333333333 55555 666666666 11 2
lowQualScore : 2 2 66 0 555 2 2 0000000000000 44444444444444444 44 777 999 44 1 6 4 6 3 3 555 77777777 11111 3 77 44 3 44 3 3 3 7 44 00 3 3 000000000000 3 3 77 6666 3 44 3 44 6 3 3 22222 3 3 3 6 3 44 222 44 777 44 66 3 6666 3 44 6 3 33 3 0000 3 55 6666666 3 7 3 1 44 3 44 3 3 3 3 3 6 3 77 4444444444444 3 3 888 44 3 44 2 555 3 44 888 2 555 3 3 0 555 3 3 3 44 3 88 55 4 8888 0 66 2 4 1 66 888 5555 4 3333 5 5 5 0000 5 66 33333333333 5 5 11 5 0 000 888 5 66 66 5 1 0 99999999999999999999999999999 333 5 0 55 99 2222 6 1 77777777 5 5 5 22222 5 66 888 88 77 0 555 5 77 000 0000 6 7 777 0 88888888888888888888888 3 3 7 3 0 888888888888 333 00 777777777777777777777777777 1 7 7777 7 33333333333 11111 111111111 44 0 6 1 3
lowQualScore : . . .. . ... . . ............. ................. .. ... ... .. . . . . . . ... ........ ..... . .. .. . .. . . . . .. .. . . ............ . . .. .... . .. . .. . . . ..... . . . . . .. ... .. ... .. .. . .... . .. . . .. . .... . .. ....... . . . . .. . .. . . . . . . . .. ............. . . ... .. . .. . ... . .. ... . ... . . . ... . . . .. . .. .. . .... . .. . . . .. ... .... . .... . . . .... . .. ........... . . .. . . ... ... . .. .. . . . ............................. ... . . .. .. .... . . ........ . . . ..... . .. ... .. .. . ... . .. ... .... . . ... . ....................... . . . . . ............ ... .. ........................... . . .... . ........... ..... ......... .. . . . .
lowQualScore : 5 5 00 1 666 5 5 3333333333333 22222222222222222 22 444 222 66 2 7 1 7 3 3 888 00000000 77777 3 99 66 3 66 3 6 6 3 66 88 3 3 333333333333 1 1 33 5555 1 22 1 22 2 1 1 22222 1 1 1 2 1 66 333 66 111 66 88 3 8888 3 66 7 3 88 3 4444 3 00 7777777 6 3 6 2 66 3 66 2 3 3 3 3 7 3 99 6666666666666 3 3 555 22 1 22 1 444 1 22 555 7 444 1 1 2 444 1 1 1 22 3 66 00 0 5555 4 11 8 9 9 11 999 6666 4 2222 0 0 0 6666 0 99 88888888888 0 0 99 0 0 666 888 0 99 99 0 3 7 55555555555555555555555555555 000 0 7 88 22 8888 7 0 00000000 7 0 0 00000 0 99 888 00 99 4 777 7 99 222 7777 7 3 777 7 33333333333333333333333 7 7 3 7 7 000000000000 000 77 777777777777777777777777777 0 3 7777 3 00000000000 33333 777777777 00 7 7 0 3
consensus : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------AATTCAAAA-AAACA--AAA-AACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-T-A-TACT--TTT-NA-----CA-CT--TTT-TCCTGAT--GAC--AAATT-TA--TT-TGAT-G-AAC-TTTGCA--ATG-TTTA-A-GCTTTAAT--CT-A------AAAC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AACG-A--CAGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GAG-CAACT--TAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-----TTGTTTT---T--T----AACAGTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT--GA----ATTGTCATCCA---CTTG-TTTAC-TGTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATATGCCT----ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAATAACAT-CGAT-ATT--ATCCTA-----CCATCGT--GTAA---GTCATCT-ATACGGTTCCTGCA-ATA
Reference ( family-3477 ) : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------AATTCAAAA-AAACA--AAA-AACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-T-A-TACT--TTT-NN-----CA-NT--TTT-TCCTGAT--GAC--AAATT-TA--TT-TGAT-G-AAC-TTTGCA--ATG-NTTA-A-GCTTTAAT--TN-A------AAAC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AACG-A--NAGT-A-GC-AAACAA-TGAA-CTG--ACAATT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TN---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GAG-CAACT--TAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-----CTGTTTTAGATGAT---AAACAGTTTTNNNTTGTTTGCTTATTCTATCTTCTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTN--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTGATATTCGCAATTTGGAGAGGATTGTCATNCANGACTTGTTTTACTTGTATTGTAATGTGCTGGTGGGCATGCGTCNTTAACCCCAGAGNNNTGGAACTAATATGCCTCTCCATGCTTACACCAAATACGATTCAATAGTNCCAAATTACCAACAATAATAACATGNGGTAATTTGATCCTATTGTTCCATCGTTGGTNAAAAGTCATCTGATACGGTTCCTGNACATA
gi|1 : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGGGGGATCCAA--TGA-CCA-CGGAG--C-AA-------AATTAAAAA-AAACA--AAA-AACATC--GTTGCTAGCA-G-ATA---GG--AATAATCTT-ATTTTTCA-T-A-TACT--TTT-TC-----CA-AT--TTT-TCCTGAT--GAC--AAATT-CA--TT-TGAT-G-AAC-TTTGCA--ATG-ATTA-A-GCTTTAAT--TA-A------AAAA-AAT-CG--CT----A-T--T-AAAA--TTGATG-AACA-ATT-AACA-A--AAGT-A-GC-AAACAA-TGAA-CTG--ATAATG-TT--CATTT-C-AAAA--ACCCGGA-TTTA-TT---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-CGAGTCCTTTTTT--GCC-A--CCAAA-TA-A-TA-TATTG-A-TATA--TCA---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTT-CCAACTG---T-CGCTTCAAAA-TTTGC-G--AAG-TTT--ATTGA--GAGGG-T----AGAACAATTT--TGGATCC-GTAAACCAAGG--AGCAA-G-TTTTC----AAATC-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GAG-CAACT--TAG--TTTTAT-ATTTAAGAAATCAGCTGACAAATCCGGCTTG----TTGTTTT---T--T--------GTTTTTGTTTGTTTGTTTATT-TATTTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---TGTT-ACAGA-GAATAA-TA-AATAAAAT--C--T-TAC--ATTCTAT---TT-GGGA--AAAATCGC---GA-TT--TGTGTC--AAATATCAT-GGGG-ACATAGGGGTGATATTTGG---TTTGCAATT--GA---TATTTTC--CCAT--TTTG-TTTAC-TGTATTGTAATG-GCTGGTGGACATG-GT-ATT-----CAGAGCAATGG--CTAATA---------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC-------AATAACAT-CGAT-ATT--ATCCTA-----CCATCGT--GTAA-----TATC--ATATGGTTCCTGCA-ATA
gi|10 : GGGTATCCGGAT-CCAACGT-CC-AACGGAGGGATCCAA--AGC-CCG-CGGAG--C-C--------AATT---------CA--AAA-AACATC--GTTCTTAGCA-T-GTA---GG---ATAATCTT-A-TTTTCA-TAA-TACT--TCC-GA-----CA-CA--TTT-TCCTGATAGAAC--AAATT-TAATTT-TGAT-G-AACTTTTGCA--ATG-TTTA-A-GCTTTAAT--CT-A------AACC-AAT-CG--TC----A-T--T-AAAA--TTGATG-AAAA-TTT-AACG-AG-CAGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TTCCCATTT-CAAAAA--ACCCGA---TTATTA---AGTTCA-AAA--CAAC-AAC-AGC-AT----AGAAA--GTG-----G-CT-GC-TAACT-TGAGTCC-TTTTT--GCCAA--TC-AA-TG-A-TA-GATTG-G-TATAC-TCC---------CACAT-AATATTAAA--TT-TG--TGG---A-AAG--GT---GAGAG---AGAGA-G--------CG---T-CACTTC--AA-TTTGC-G--
gi|11 : ---A--TT-TG--TTA---A-AAG---T---C--AA---CGAAA-GTC-CCACC-G---T-CGCTTC-AAA-TTTGC-G--AAG-TTCAAATTGA--AGGGGCT----AAAAAA--TT--TGGATCC-GTAAACCACGG--GACAA-G-TTTTTCA--AAATG-AT----CAT-A-A-A----ACA-CGGAG--CA-----------AT--A-T--CCTGAA-TAA---CACG---GAG-CAACT--TAG--TTTTAT-ATCTAGGAAATCAGCTGTCAAGTGTGG----------GTTTT---T--T---AAACAGTTTTCAATTGT
gi|11 : TTTTTTAAACAGTTTT--CAATT-G-TGATC---T-TA-CCAGAAGAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-AGGA--AAAATTGCG--GA-TT--TGTATG--AAATAT-ATAGGGG-ACgatcttaccagaagaattataaataaaatcttacattctgtttaggaaaaattgcggatttgtatgaaatatataggggactgttctaatcgtgaaatactctcagcataaca
gi|12 : atttgttaaaagtcaacgaaagtcccaccgtcgcttcaaatttgcgaagttcaaattgaaggggctaaaaaatttggatccgtaaaccacgggacaagtttttcaaaatgatcataaaacacggagcaatatcctgaataacacggagcaacttagttttatatctaggaaatcagctgtcaagtgtgggA-TACAATAAAGT--CGATATACCCATTTTAA---TT-TGGACTAAAATGGCACAGA-TT--TGTGTGTCAAATATCAG-GGAGCATATAGGGGTGA-ATTTTGATATTCGCAATTTGGAGAGGA--G-CATT------TTGTTTTACTTGTAT-GTAATGTGCTGGTGGACATGCGTCATTAACCCTAGAGGCCTGGAATTAAT-TGCCTCTCCATGCTTACACCAAATACGATTCAATAATACTA--TTACCAACAATAA----ATGAGGTAATTTGATCCTATTGTTCCATAATTGGTAAAAAGTCATCTGATATGGTT-CTGCACATAtgttctaatcgtgaaatactctcagcataaca
gi|13 : gttgaaacatagtaaAGTCCTTTTT---GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT--G--TGA---A-ATG--GT---CGAA----CCAAA-GTC-CCACCCG---T-CACTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGAAAACC---G--AGCAA-------------------------AG-A-A-A----CCA-CGGAG--CACTCATTCACTTATG-A-T--CCCA-A--AATC-CACG---GAG-C-TTT--TAGTCTTTTCT-ATC
gi|14 : tt--ATG-ATTA-A-GCTTTGAT--CT-A------AAAC-AAT-CG--CC----A-T--T--AAA--TTGATG--AAG-ATT-AACG-A--C-GT-A-GC--AATA---GAA-CTG--ATTTTT-TT--CATTT---AAAA--ACCCGAA-TTTA-TA---AGTT-A-AAG--C--C-AAT-A-C-AT----GG-AA--GTG-----A----GCGTATC---GAGT-CTTATTT--GTC-A--T--AA-TGAA-TG-GATTG---TATA--TCTAATTTGACAC---T-AAT-T---ATTTT-TG--TTA---C-AAG--ATG--CG-AA---CC-AA-GT---CATGTG--------TTCAAAA-TTTGC-G--AAG-TTCT-ATTGA--AGGGG-T----AGAAAAaacattcaccgtacactaatgattctggatgacttgtatgtttattcaaaacatatgggatatccaat
gi|15 : CGGGTATTCG-ATGCCAAGGTACC-CG---AGGGATCCAA--AGCGCCGGCGGAG--A-CA-------AATTC--------CA--AAACAACATC--GTTCTTAGCA-T-GTA---GG--AATAACTCT-ATATTTTATT-A-TACC--TTA-TA-----CA-CA--TTT-TCCT-ATG-GAC---AGTT-TA--TT-TGAT-A-AAC-TTTGCA--ATG-TTTA-A-GCTTTAAT--CT-A------AAAC---TCCG--CC----A-T--T-AAAA--TTGATG-AAAGAATT-AACG-GACTAGT-A-GCAAAACAATTGAA-CT
gi|16 : ACCGGGTATCCGAAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------AATTTAAAA-AAA--------AACATC--GTTTTTAGCA-T-GTA---GG--AATAATCTT-ATTTTTCA-T-A-TACT--TCT-GA-----CA-CA--TTT-TCCTGAT--GAC--AAATT-TA--TT-TG
gi|16 : TTT--TGGATCC-GTAAACCACGG--AGTGA-----TCC----AAATA-Agatcactccgtggtttacggatccaaaa
gi|17 : accgggtatccgaatccaacgtccacggagggatccaaagcccgcggagccaaatttaaaaaaaaacatcgtttttagcatgtaggaataatcttatttttcatatacttctgacacattttcctgatgacaaatCTTTAAT--CT-A------AAAT-AAT-CG--CC----A-T--T-AAAA--TTTGTG-AAAG-AAT-AACG-A--AAGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCGAA-TTTT-AA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-A
gi|18 : TCAGAGT-CCAACGT-CC--GCGGAGGGATCCAA--TGA-CCG-CGGAG-----------------CAAAA-AACCA--AGG-AACATCGTGTTTTTAGCA-g
gi|19 : GGCATCCGGAT-CCAACGT-CCACG-GGAGGGATCC-A--AGC-CCG-CGGAG--C-CA-------AATTCAAgt
gi|2 : ccCCAGTTATCCGGAT-CCAACGT-CC--GCAGAGAGATCCAA--TGA-CCG-CGGAG--C-AA-------AATTTAAAA-AAA------A-AACATC--GTTTATAGCA-G-GTA---GG--AATAATCTT-ATTTTTCA-T-A-TACT--TTT-TA-----CA-CT--TTT-TCCTGAT--AAC--AAATT-TA--TT-TGAT-G-AAA-TTTGCA--ATG-ATTA-A-GCTTTGAT--TT-A------AAGC-AAT-CG--CT----A-T--T-AAAA--ATCATT-AAA---TC-AACG-A--CAGT-A-GC-AAAAAA-TG---------------TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACTT-TGAGTCCTTTTTT--GCT-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TT--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--GAGGG-T----AGAAAAATTT--TGGATCC-GTAAACTACGA--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GAG-CAACT--TTG--TTTTAT-ATTTAAGAAACCAGCT
gi|2 : TTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TTTCCAGA-GAATTA-TA-AATAAAAC--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-ATAGGGG-ACGTAGGGGTGATATTTTG---TTTGCAATT---------TTGTCATCCAGGACTTG-TTTAC-TGTATTGTAATG-GCTGGTGGGCATG-GTTTT------CAGAGCAATGG--CTAATATGCCT-------------TCAA----GATTCAATAGTTCCAAATT----ACAATAATAACAT-CGAT-ATT--ATCCTA-----CCATCGT---------GTCATATCATACGGTTCCTGAA-ATAttttacagttttcatagtgatcttttccagagaattataaataaaaccttacattctgtttgggaaaaatcgcgatttgtgtgaaatatataggggacgtaggggtgatattttgtttgcaattttgtcatccaggacttgtttactgtattgtaatggctggtgggcatggttttcagagcaatggctaatatgccttcaagattcaatagttccaaattacaataataacatcgatattatcctaccatcgtgtcatatcatacggttcctgaaata
gi|21 : ccagttatccggatccaacgtccgcagagagatccaatgaccgcggagcaaaatttaaaaaaaaaacatcgtttatagcaggtaggaataatcttatttttcatatactttttacactttttcctgataacaaatttatttgatgaaatttgcaatgattaagctttgatttaaagcaatcgctattaaaaatcattaaatcaacgacagtagcaaaaaatgttcatttcaaaaacccgaatttataagttcaaaacacaatagcatagaagtgactgctactttgagtccttttttgctatcaaatgatagattgatatatccctaattattttttaaaaggtcgaaaccaaagtcccacccgtcgcttcaaaatttgcgaagttcattgagagggtagaaaaattttggatccgtaaactacgaagcaagtttttcaaatgatccataaaacacggagcaatgatcctgataacgcggagcaactttgttttatatttaagaaaccagcGGTATCCGGAT-CCAACGT-CC--ACGGAGG-ATCCAA--AGC-CCG-CGGAG--C-CA-------AATTCAA
gi|22 : ACCGGGTATCCGGAT-CCAATGT--C-CACGGAGGGATCCAA--TGA-TCG-CGGAG--CACA-------A
gi|3 : CGGGTATC--GAT-C-AACGT-CCGCACGG-GGGATCCAAGAAGC-CAG---GAG--C-AATATATTTAAGTAAAAATAAACA--AAA-AACATC--GTTGCTA-CA-G-ATACGTGA--ACTTATCTTTATTTGTCAAT-AATACTAATTT-ACA----CA-AT--TTTATGCTGAT--GA---AAATT-CA--TT--GAT-G-AAC-TTTGCATGAAG-TCGACA-GTTTTAAT--TT-ATGATCAAAAA-AAT-CG--CCTCATA-TGAT-AAAT--TTGATG-AGCA-TTT-AA------AAGT-A-G--AAACAACTGAA-CTG--ATAATGGTT--CATTTTC-AAAACAACCGGAT-TTTA-TGTAGAGTTAC-AAA--C-AC-AA--AGC-ATT---AG-AA--GTG-------CT-GC-TAC-T-CG-GTCCTTTTTTTAGCC-A--CCAAAATG-AATA-TATTGTA-TATA--TTC---------AA--T-AAT-T---A--TTATG--TAT---A-AAG--GT---CA-------CACA-GGT-TCACT-G---T--G-TTCAAAA-TTTGC-G--A-G-TTT--ATTGA--GAGGC-T----AGAAACATTTGTTGGACTCAAGAACCCAAGG--AGCTA-G-TTTTC----AAA-A-AT-CATCAT-ACA-A----ACA-CGCAT--CA-----------ATG-ACT--CCTG-AATAA---CGCG---GAGGCAACTGTTGT--TTTTAT-ATTTAG-AAGTGATC-GA--AATTCGTCTTATGAGCTGTGGTAGATGAT--------GTTTTGTTTTGTTTGCTTATTCTATCTTCCCTGTTC--CTCTTTTAACA-CA-GCT--TT---T-CT-TCATA-GA--TA-TG-AATATAA---C--T-TA---ATTCTAT---TT-
gi|4 : catctaaatcgcaggcaagtcatcttagaaacaCCGGGTATCCGGAT-CCAACG--AC-CGCGGAGGGATCCAA--AGC-CTG-CGGA-------------------------------------CATT--GTTCTTAGCAGG-GTA---CG--GATG----C-A----TCA-T-A-TAC---TTC-AA-----CA-CTTGTTT-CCCTGAT--GAC--AAATT-TA--TTGTAGT-GAAAC-TTTGCA--ATGCTTTA-A-GCTTTAATCCTA-A------AGAC-AAT-CGGCTC----ATT--T-GAAA--TTGATG-AAAG-ATT-AACGTA--CAGT-A-G--AAA-GA-TG---------CAAT--------TTC-C-AAAA--TCCCGAA-TTTT-TA---AGTTCA-AAAATC-ACTAAT---C-AT----AG-AA----G-----A-CT-GCTTACCTATGAGTTCTTTTTT--GCC-AGGCTAAA-TG-A-TAGGATTGCA-TATA--TCC---------C---T-AAT-TG--A--GT-TGGTTAA---A-GAG--GTCAGCGAGATATCCAAA-GTC-CCACCCGTCAT-CGCCTTAAAACTTTGC-G--AAGATTC--ATCAAGCGGAGG-TACCAAAAAAAAAAT--TGGATCCAGTTAAACACGG--AGCAA-GTTTTTC----AAATG-ATGC--CAT-G-ACAAGATACA-CGAAGGTCA-----------ATG-A-TG-CCTG-A-TAAT--CGCGGCCGAG-CAACT--TAG--TTTTATAATCTAGGAAATCAGCTGACAAATGTGGTTT-----TTATTT------------AACAGTTTTCATGTGT
gi|4 : TTTTTATTTAA-CAGTTTT--CA-TGTG-TGATCGTGT-TT-CCAGA-GAATTAATA-AATATAGTAAT--T-TGC---TTCTGT---TTGGGGA--AAAATTGC---AACTT--TGTATT--AAATAT-AT-AGGG-gatcgtgtttccagagaattaataaatatagtaatttgcttctgtttggggaaaaattgcaactttgtattaaatatatagggggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : ccgggtatccggatccaacgaccgcggagggatccaaagcctgcggacattgttcttagcagggtacggatgcatcatatacttcaacacttgtttccctgatgacaaatttattgtagtgaaactttgcaatgctttaagctttaatcctaaagacaatcggctcatttgaaattgatgaaagattaacgtacagtagaaagatgcaatttccaaaatcccgaatttttaagttcaaaaatcactaatcatagaagactgcttacctatgagttcttttttgccaggctaaatgataggattgcatatatccctaattgagttggttaaagaggtcagcgagatatccaaagtcccacccgtcatcgccttaaaactttgcgaagattcatcaagcggaggtaccaaaaaaaaaattggatccagttaaacacggagcaagtttttcaaatgatgccatgacaagatacacgaaggtcaatgatgcctgataatcgcggccgagcaacttagttttataatctaggaaatcagctgacaaatgtggACCGGGTATCCGGAT-CCAACGT-CC-CACCTAGGG-TCCAA----C-CC--CGGAG--C-CA-------AATTCAAAA-AA-----------CATC--GTTCTTAGCA-ATGTA---GG--AATAATCGT-ATTTT-CA-T---TACT--TTT-GA-----CA-GC--ATT-TTCCGA---GAC--AA-TT-TA--TT-TGATTG-AAC-TTTGCA--ATG--TTA-A-GCTTTAAT--TCTA------AAAC-AAT-CG--CC----A-T----AAAT--TTGATG-AAAG-ATTTAACG-A--CAGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-AT--CGTTT-C-AAAA--ACCCGAAATTTT-TA---AGTTCA-AAA--C-AC-ATTTAGC-AT----AG-AA--TTG-------CT-GC-TACCT-TGAGTCCTATTTT--GCC-A--TCAA--TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TGA---A-ATG--GT---CGAAA---CCAAAAGTC-CCACCCG---T-CACTTCAAAA-T--GC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAG-AAACCACGG--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----CAA-CGGAG--CA-----------ATGTA-T--CCTG-A-TAA---CAC----GAG-CAACT--TAG--TTTTAT-ATCTAGGAAATCAGCTGAC-AATGTGG----------GTTTT-----------AACAGTTTTggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : TTTTAA--CAGTTTT--TA--A-A-CAATC----------AGA-GAATTA-TG-AATAAAAT-----T-TAC--ATTCTGTATATT-GGGA--AAAATCGC---GA-TTAATATGTtaaacaatcagagaattatgaataaaatttacattctgtatattgggaaaaatcgcgattaatatgttctattgtcatgaaatacttttagcacaacgctgt
gi|6 : accgggtatccggatccaacgtcccacctagggtccaaccccggagccaaattcaaaaaacatcgttcttagcaatgtaggaataatcgtattttcattacttttgacagcattttccgagacaatttatttgattgaactttgcaatgttaagctttaattctaaaacaatcgccataaatttgatgaaagatttaacgacagtagcaaacaatgaactgacaaatatcgtttcaaaaacccgaaatttttaagttcaaaacacatttagcatagaattgctgctaccttgagtcctattttgccatcaatgatagattgatatatccctaattatttgtgaaatggtcgaaaccaaaagtcccacccgtcacttcaaaatgcgaagttcattgaaggggtagaaaaattttggatccagaaaccacggagcaagtttttcaaatgatccataaacaacggagcaatgtatcctgataacacgagcaacttagttttatatctaggaaatcagctgacaatgtgggGGTATC-GGAT-CCAACGT-CC--ACGGAGGGATGCCA--AGC-CCG-CGGAG--C-CA-------AATC-------------AAA-AACATC--GTTCTTAGCA-T-GTA---GA--AATAATCTTGA--TTTCA-T-A-TACT--TCGACA-----CA-A---TTT-TCCTGAT--GAC--AAATTATA--TT-TGAT-G-AAC-TTT-CA--ATG-TTTA-ATGCTTTAAT--TA-A------AAAC-AAT-CGC-CC----A-T--T-AAGATCTTGATGAAAAG-ATT-AACG-A--CAGTGA-GC-CAACAA--GAT-GCG--ACAA-T-TC--CATTC----AAA--ACCCGAT-ATTA-TT---AATTCA-AAA--C-AC-AAT-AGC-AT----AG-AGATGTG-----G--T-GC-TACCT-TTAGTCCTTTTTT--G-C-A--C--AA-TG-A-TA--ATTG-A-TAAT--TCC---------C---T---------------------------------------GAA---CCAAA-GTC-CCACCCG---T---CTTCAAAA-TTT-C-G--AAG-TTC--ATTGA--AGGGG-T----AGACAATCTT--TGGATCCAGATAACC-CGGAAAGCAATG-ATTTCTCGAAAATGCAT-T--CCTAA-A-A----ACACCGGAG--CA-----------ATG-A-TACCCTG-ATTAACTGCGTG---AAG-CAACT--TAG--TTTTAT-ATCT-GGAAATCAGCTGAC-AATGTGG---------TGTTTAAAACAATTCCAAAGAATTTtctattgtcatgaaatacttttagcacaacgctgt
gi|6 : -TT-CCAAA-GAATT--TA-AATAAAAT--C--T-TAC--A-TCTGT---TT--GGA--AAAATTCC---GA--T--TATATG--AAATA------GGG-ACGTaaataaaatcttacatctgtttggaaaaattccgattatatgaaatagggacgtttaatcaatgcaatacttttagcgaaacgctgac
gi|7 : ggtatcggatccaacgtccacggagggatgccaagcccgcggagccaaatcaaaaacatcgttcttagcatgtagaaataatcttgatttcatatacttcgacacaattttcctgatgacaaattatatttgatgaactttcaatgtttaatgctttaattaaaaacaatcgcccattaagatcttgatgaaaagattaacgacagtgagccaacaagatgcgacaattccattcaaaacccgatattattaattcaaaacacaatagcatagagatgtggtgctacctttagtccttttttgcacaatgataattgataattccctgaaccaaagtcccacccgtcttcaaaatttcgaagttcattgaaggggtagacaatctttggatccagataacccggaaagcaatgatttctcgaaaatgcattcctaaaaacaccggagcaatgataccctgattaactgcgtgaagcaacttagttttatatctggaaatcagctgacaatgtggtgtttaaaacaaACCGGGTATCCGGAT-CCAACGT-CN-NNNNNNNNNNNNNNN--NNN-NNN-NNNNN--N-NN-------NNNNNNNNN-NNNNN--NNN-NNNNNN--NNNNNNNNNN-N-NNN---NN--NNNNNNNNN-NNNNNNNN-N-N-NNNN--NNN-NNNNCGACA-CT--TTT-TCCTGAT--GAC--AAATT-TA--TT-TGAT-G-AAC-TTTGCA--ATG-TTTA-A-GCTTTAAT--CT-A------AAAC-AAT-CA--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-GACG-A--CAGT-A-GC-TAACAA-TAAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCAAA-TTAT-TA---AGTTCA-AAA--C-AC-ACT-AGC-AT----AG-AA--ATG-----A-CT-GC-TACCT-TGAGTCCTGTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACTCG---T-CACTTCAAAA-TATGCGG--AAG-TTC--ATTGA--AGGGG-T----ATAAttaatcaatgcaatacttttagcgaaacgctgac
gi|8 : cCCGGAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCA-CGGAAGCC-CA-------AATTCAAAA-A----------AACATC--GTTCTTAGCA-T-GTAC--GG--GATAATC-T-ATTTTTCA-T-A-TAC---TTT-GA-----CACAT--TTT-TCCTGA---GACCAAAATT-TA--TT-TGAT-G--AC-TTTGCA--ATG--TTA-A-GC-TTAAT--CT-A------AAACAAAT-CG--CC----A-T--TAAAAA--TTGATG-AAAG-ATT-AACG----CAGT-ATGC-AAACAA-TGAAGCTGTAACAAAT-TC--CATTT-C-AAAA--ACCCGA---TTA-TT---AAGTCATAAA--CAAC-AAT-AGCAAT----AG-AA--GTG-----GCCT-GC-TACCT-TGAGTC---TTTT--GCC-A--TCAAA-TG-A-TG-ACTTG-ATTATAACTCC---------C---TAAAT-T---T--TT-TG--TGA---G-AAACTGT---CGAAA---CCAGA-GTC-CAACCCG---TCCACTTCAAAA-TTTGC-GGCAAG-T
gi|9 : tatctcGGTATCCG-AT-CGACCGT-CT-CG--GAGG-ATC-AT--GAC-CTG-CGGAG--A-AA-------AAC-CAAAA-AAAAAGCAAA-AACAT---GTTTTTAGCA-G-GCA---AGGAAATAATCTT-ATTTTTCA-T-A-TACT--TTT-TA-----CA-CT--TTT-CCCTGAT--G----AAATT-TA--TT---GT-G-AACATGTGAG--ATT-ATTA-A--CTTTAGTC-TA-G------AAAC-AAT-CG--CA----T-T--T-AAAA--TTGATGAAAAG-ATT-AACG-A---AGT-A-AG-AA-------AA-CTG--AT--TT-TT--CA-TT-A-AAAA--ACC--AA-TTTA-TA---AGTTC--AAA--C-AC-AA--AAC-ACGAGGAG-AG--ATGTATATA-CTAGC-TGTTT-TGA-TCC-TTTTT--GTC-A--TC-AA-TG-A-TG-GATTG-A-TATA--GTC---------C---T-AAT-T---A---T-TG--TTATTTACAAG--AT---TGAAA---CC-AA-GTCTCCATCCG---T-CGC-TCAAAA-ATTGC-G--AAG-TGC--ATTGA--AGGGc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GCTTCTGATGTGACTTGTGTATTCCTCATCCACATTCCACTAAAACAGTACTACC
Unaligned ( gi|23 ): TTCATATACTTCTCAGCAATTTTATTAGAAAATCTA
Alignments
lowQualScore : 11 444444444444 111111 1111 111111 1111 1111111 1111111111111 1 111 1111 1111 1111 22222222222 11 1 222 1111111111 22222222222 1 11 1111 11111111 11111 111 2222 222 99999999999999999999999 1 1 1 1 333333333 11 88888888888 222 2222 44444444444444444 222 5555555555555 1
lowQualScore : 2 2 66 0 555 2 2 44444 8888888 1 111111111111 44 777 999 44 1 6 6 6 999 222222 3 3333 3 3 44 44 3 44 3 3 3 3 3 44 77 3 3 6 111111 3 3 3 77 6666 3 44 3 44 6 3 3 3 3 777 3 3 3 6 3 44 999 44 777 44 66 6 555 3 44 6 3 33 3 0000 3 55 6666666 3 7 3 1 44 3 44 3 3 3 3 3 6 3 77 4444444444444 3 3 888 44 3 44 2 555 3 44 888 2 555 3 3 0 555 3 3 3 44 3 88 55 4 8888 0 66 2 4 1 66 888 5555 4 3333 5 5 5 0000 5 66 33333333333 5 5 11 0 5 000 888 5 66 66 5 1 3 7 0 7777777777 66 77777777777 44 5 55 99 2222 6 1 77777777 5 5 5 22222 5 66 888 88 77 0 555 5 77 99 0000 6 7 333 0 33333333333333333333333 3 3 7 3 3 444444444 88 55555555555 333 8888 7 77777777777777777 7 333 7 3333333333333 0 6 3
lowQualScore : . . .. . ... . . ..... ....... . ............ .. ... ... .. . . . . ... ...... . .... . . .. .. . .. . . . . . .. .. . . . ...... . . . .. .... . .. . .. . . . . . ... . . . . . .. ... .. ... .. .. . ... . .. . . .. . .... . .. ....... . . . . .. . .. . . . . . . . .. ............. . . ... .. . .. . ... . .. ... . ... . . . ... . . . .. . .. .. . .... . .. . . . .. ... .... . .... . . . .... . .. ........... . . .. . . ... ... . .. .. . . . . . .......... .. ........... .. . .. .. .... . . ........ . . . ..... . .. ... .. .. . ... . .. .. .... . . ... . ....................... . . . . . ......... .. ........... ... .... . ................. . ... . ............. . . .
lowQualScore : 5 5 00 1 666 5 5 55555 1111111 2 111111111111 22 444 222 66 2 7 7 7 999 777777 3 1111 3 3 66 66 3 66 3 6 6 6 6 66 11 3 3 2 999999 1 1 1 33 5555 1 22 1 22 2 1 1 1 1 777 1 1 1 2 1 66 000 66 111 66 88 7 888 3 66 7 3 88 3 4444 3 00 7777777 6 3 6 2 66 3 66 2 3 3 3 3 7 3 99 6666666666666 3 3 555 22 1 22 1 444 1 22 555 7 444 1 1 2 444 1 1 1 22 3 66 00 0 5555 4 11 8 9 9 11 999 6666 4 2222 0 0 0 6666 0 99 88888888888 0 0 99 0 0 666 888 0 99 99 0 7 5 3 7 0000000000 66 66666666666 55 0 88 22 8888 7 0 00000000 7 0 0 00000 0 99 888 00 99 4 777 7 99 22 7777 7 3 333 7 33333333333333333333333 3 3 3 3 3 777777777 33 33333333333 333 3333 3 00000000000000000 3 333 3 3333333333333 7 7 3
consensus : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------AATTCAAAA-AAA-A--AAA-AACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT--TTCG-----ACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAAT-----T----ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGT---AA--TATC--ATACGGTTCCTGCA-ATA
Reference ( family-3477 ) : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------AATTCAAAA-AAACA--AAA-AACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT--TTTN-----ACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-ATTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATATGCCT----ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGT---AAGTCATCT-ATACGGTTCCTGCA-ATA
gi|1 : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGGGGGATCCAA--TGA-CCA-CGGAG--C-AA-------AATTAAAAA-AAACA--AAA-AACATC--GTTGCTAGCA-G-ATA---GG--AATAATCTT-ATTTTTCA-TA-TACT--TTTT-----CCA-A-T--TTT-TCCTGAT-G--AC--AAATT-CA--TT-TGAT-G-AAC-TTT-GCA--ATG-ATTA-A-GCTTTAAT-TAA------AA-AA-AAT-CG--CT----A-T--T-AAAA--TTGATG-AACA-ATT-AAC-A-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ATAATG-TT--CATTT-C-AAAA--ACCCGGA-TTTA-TT---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-CGAGTCCTTTTTT--GCC-A--CCAAA-TA-A-TA-TATTG-A-TATA--TCA---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTT-CCAACTG---T-CGCTTCAAAA-TTTGC-G--AAG-TTT--ATTGA--GAGGG-T----AGAACAATTT--TGGATCC-GTAAACCAAGG--AGCAA-G-TTTTC----AAATC-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATTTAAGAAATCAGCTGACAAATCCGGCTTGTT----GTTTTTT-----------GTTTTTGTTTGTTTGTTTATT-TATTTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---TGTT-ACAGA-GAATAA-TA-AATAAAAT--C--T-TAC--ATTCTAT---TT-GGGA--AAAATCGC---GA-TT--TGTGTC--AAATATCAT-GGGG-ACATAGGGGTGATATTTGG---TTTGCAATT----GATATTTTC--CC---ATTTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GT-ATT-----CAGAGCAATGG--CTAATA---------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC-------AA------TAACATCGA---TATTATCCTACCATCGTGT---AA--TATC--ATATGGTTCCTGCA-ATA
gi|10 : GGGTATCCGGAT-CCAACGT-CC-AACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------A-TTCAAAA-AA-----------CATC--GTTCTTAGCA-T-GTA---GG--A-TAATCTT-ATTTT-CA-TAATACT--TCCG-----ACA-C-A--TTT-TCCTGAT-AGAAC--AAATT-TAATTT-TGAT-G-AAC-TTTTGCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-CC-AAT-CG--TC----A-T--T-AAAA--TTGATG-AAAA-TTT-AAC-G-AGC-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TTCCCATTT-CAAAAA--ACCCGA---TTATTA---AGTTCA-AAA--CAAC-AAC-AGC-AT----AGAAA--GTG-----G-CT-GC-TAACT-TGAGTCC-TTTTT--GCCAA--TC-AA-TG-A-TA-GATTG-G-TATAC-TCC---------CACAT-AATATTAAA--TT-TG--TGG---A-AAG--GT---GAGAG---AGAGA-G--------CG---T-CACTTC--AA-TTTGC-G--
gi|11 : ---A--TT-TG--TTA---A-AAG---T---C--AA---CGAAA-GTC-CCACC-G---T-CGCTTC-AAA-TTTGC-G--AAG-TTCAAATTGA--AGGGGCT----AAAAAA--TT--TGGATCC-GTAAACCACGG--GACAA-G-TTTTTCA--AAATG-AT----CAT-A-A-A----ACA-CGGAG--CA-----------AT--A-T--CCTGAA-TAA---CACG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGTCAAGTGTGG----------GTTTTTTAAACA------GTTTTCAATTGT
gi|11 : TTTTTTAAACAGTTTT--CAATT-G-TGATC---T-TA-CCAGAAGAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-AGGA--AAAATTGCG--GA-TT--TGTATG--AAATAT-ATAGGGG-ACgatcttaccagaagaattataaataaaatcttacattctgtttaggaaaaattgcggatttgtatgaaatatataggggactgttctaatcgtgaaatactctcagcataaca
gi|12 : atttgttaaaagtcaacgaaagtcccaccgtcgcttcaaatttgcgaagttcaaattgaaggggctaaaaaatttggatccgtaaaccacgggacaagtttttcaaaatgatcataaaacacggagcaatatcctgaataacacggagcaacttagttttatatctaggaaatcagctgtcaagtgtgggA-TACAATAAAGT--CGATATACCCATTTTAA---TT-TGGACTAAAATGGCACAGA-TT--TGTGTGTCAAATATCAG-GGAGCATATAGGGGTGA-ATTTTGATATTCGCAATTTGGAGA-GGAG-CATT-------TTGTTTTACTTGTAT-GTAATGTGCTGGTGGACATGCGTCATTAACCCTAGAGGCCTGGAATTAAT-TGCCTCTCCATGCTTACACCAAATACGATTCAATAATACT--ATTACCAACAATAAATGAGGTAAT-TTGATCCTATTGTTCCATAATTG-GTAAAAAGTCATCTGATATGGTT-CTGCACATAtgttctaatcgtgaaatactctcagcataaca
gi|13 : gttgaaacatagtaaAGTCCTTTTT---GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT--G--TGA---A-ATG--GT---CGAA----CCAAA-GTC-CCACCCG---T-CACTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGAAAACC---G--AGCAA-------------------------AG-A-A-A----CCA-CGGAG--CACTCATTCACTTATG-A-T--CCCA-A--AATC-CACG---GA-GC-TT--TTAGTCTTTTCT-ATC
gi|14 : tt--ATG-ATTA-A-GCTTTGAT-CTA------AA-AC-AAT-CG--CC----A-T--T--AAA--TTGATG--AAG-ATT-AAC-G-A-C--GT-A-GC--AATA---GAA-CTG--ATTTTT-TT--CATTT---AAAA--ACCCGAA-TTTA-TA---AGTT-A-AAG--C--C-AAT-A-C-AT----GG-AA--GTG-----A----GCGTATC---GAGT-CTTATTT--GTC-A--T--AA-TGAA-TG-GATTG---TATA--TCTAATTTGACAC---T-AAT-T---ATTTT-TG--TTA---C-AAG--ATG--CG-AA---CC-AA-GT---CATGTG--------TTCAAAA-TTTGC-G--AAG-TTCT-ATTGA--AGGGG-T----AGAAAAaacattcaccgtacactaatgattctggatgacttgtatgtttattcaaaacatatgggatatccaat
gi|15 : CGGGTATTCG-ATGCCAAGGTACC-CG---AGGGATCCAA--AGCGCCGGCGGAG--A-CA-------AATTC--------CA--AAACAACATC--GTTCTTAGCA-T-GTA---GG--AATAACTCT-ATATTTTATTA-TACC--TTAT-----ACA-C-A--TTT-TCCT-ATGG--AC---AGTT-TA--TT-TGAT-A-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC---TCCG--CC----A-T--T-AAAA--TTGATG-AAAGAATT-AACGG-A-CTAGT-A-GCAAAACAATTGAA-CT
gi|16 : ACCGGGTATCCGAAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CA-------AATTTAAAA-AAA--------AACATC--GTTTTTAGCA-T-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT--TCTG-----ACA-C-A--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TG
gi|16 : TTT--TGGATCC-GTAAACCACGG--AGTGA-----TCC----AAATA-Agatcactccgtggtttacggatccaaaa
gi|17 : accgggtatccgaatccaacgtccacggagggatccaaagcccgcggagccaaatttaaaaaaaaacatcgtttttagcatgtaggaataatcttatttttcatatacttctgacacattttcctgatgacaaatCTTTAAT-CTA------AA-AT-AAT-CG--CC----A-T--T-AAAA--TTTGTG-AAAG-AAT-AAC-G-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCGAA-TTTT-AA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-A
gi|18 : TCAGAGT-CCAACGT-CC--GCGGAGGGATCCAA--TGA-CCG-CGGAG-----------------CAAAA-AACCA--AGG-AACATCGTGTTTTTAGCA-g
gi|19 : GGCATCCGGAT-CCAACGT-CCACG-GGAGGGATCC-A--AGC-CCG-CGGAG--C-CA-------AATTCAAgt
gi|2 : ccCCAGTTATCCGGAT-CCAACGT-CC--GCAGAGAGATCCAA--TGA-CCG-CGGAG--C-AA-------AATTTAAAA-AAA------A-AACATC--GTTTATAGCA-G-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT--TTTT-----ACA-C-T--TTT-TCCTGAT-A--AC--AAATT-TA--TT-TGAT-G-AAA-TTT-GCA--ATG-ATTA-A-GCTTTGAT-TTA------AA-GC-AAT-CG--CT----A-T--T-AAAA--ATCATT-AAA---TC-AAC-G-A-C-AGT-A-GC-AAAAAA-TG---------------TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACTT-TGAGTCCTTTTTT--GCT-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TT--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--GAGGG-T----AGAAAAATTT--TGGATCC-GTAAACTACGA--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTTG--TTTTAT-ATTTAAGAAACCAGCT
gi|2 : TTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TTTCCAGA-GAATTA-TA-AATAAAAC--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-ATAGGGG-ACGTAGGGGTGATATTTTG---TTTGCAATT--------TTGTCATCCAGGA-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGGCATG-GTT-TT-----CAGAGCAATGG--CTAA------T----ATGCCT---TCAA----GATTCAATAGTTCCAAATT----ACAATAA------TAACATCGA---TATTATCCTACCATCGTGT---CA--TATC--ATACGGTTCCTGAA-ATAttttacagttttcatagtgatcttttccagagaattataaataaaaccttacattctgtttgggaaaaatcgcgatttgtgtgaaatatataggggacgtaggggtgatattttgtttgcaattttgtcatccaggacttgtttactgtattgtaatggctggtgggcatggttttcagagcaatggctaatatgccttcaagattcaatagttccaaattacaataataacatcgatattatcctaccatcgtgtcatatcatacggttcctgaaata
gi|21 : ccagttatccggatccaacgtccgcagagagatccaatgaccgcggagcaaaatttaaaaaaaaaacatcgtttatagcaggtaggaataatcttatttttcatatactttttacactttttcctgataacaaatttatttgatgaaatttgcaatgattaagctttgatttaaagcaatcgctattaaaaatcattaaatcaacgacagtagcaaaaaatgttcatttcaaaaacccgaatttataagttcaaaacacaatagcatagaagtgactgctactttgagtccttttttgctatcaaatgatagattgatatatccctaattattttttaaaaggtcgaaaccaaagtcccacccgtcgcttcaaaatttgcgaagttcattgagagggtagaaaaattttggatccgtaaactacgaagcaagtttttcaaatgatccataaaacacggagcaatgatcctgataacgcggagcaactttgttttatatttaagaaaccagcGGTATCCGGAT-CCAACGT-CC--ACGGAGG-ATCCAA--AGC-CCG-CGGAG--C-CA-------AATTCAA
gi|22 : ACCGGGTATCCGGAT-CCAATGT--C-CACGGAGGGATCCAA--TGA-TCG-CGGAG--CACA-------A
gi|3 : CGGGTATC--GAT-C-AACGT-CCGCACGG-GGGATCCAAGAAGC-CAG---GAG--C-AATATATTTAAGTAAAAATAAACA--AAA-AACATC--GTTGCTA-CA-G-ATACGTGA--ACTTATCTTTATTTGTCAATAATACTAATTTAC----ACA-A-T--TTTATGCTGAT-G--A---AAATT-CA--TT--GAT-G-AAC-TTT-GCATGAAG-TCGACA-GTTTTAAT-TTATGATCAAA-AA-AAT-CG--CCTCATA-TGAT-AAAT--TTGATG-AGCA-TTT-AA----A---AGT-A-G--AAACAACTGAA-CTG--ATAATGGTT--CATTTTC-AAAACAACCGGAT-TTTA-TGTAGAGTTAC-AAA--C-AC-AA--AGC-ATT---AG-AA--GTG-------CT-GC-TAC-T-CG-GTCCTTTTTTTAGCC-A--CCAAAATG-AATA-TATTGTA-TATA--TTC---------AA--T-AAT-T---A--TTATG--TAT---A-AAG--GT---CA-------CACA-GGT-TCACT-G---T--G-TTCAAAA-TTTGC-G--A-G-TTT--ATTGA--GAGGC-T----AGAAACATTTGTTGGACTCAAGAACCCAAGG--AGCTA-G-TTTTC----AAA-A-AT-CATCAT-ACA-A----ACA-CGCAT--CA-----------ATG-ACT--CCTGAA-TAA---CGCG---GAGGCAACTGTTGT--TTTTAT-ATTTA-GAAGTGATC-G--AAATTCGTCTT-AT----GAGCTGT-GGTAGATGATGTTTTGTTTTGTTTGCTTATTCTATCTTCCCTGTTC--CTCTTTTAACA-CA-GCT--TT---T-CT-TCATA-GA--TA-TG-AATATAA---C--T-TA---ATTCTAT---TT-
gi|4 : catctaaatcgcaggcaagtcatcttagaaacaCCGGGTATCCGGAT-CCAACG--AC-CGCGGAGGGATCCAA--AGC-CTG-CGGA-------------------------------------CATT--GTTCTTAGCAGG-GTA---CG--GATG----C-A----TCA-TA-TAC---TTCA-----ACA-C-TTGTTT-CCCTGAT-G--AC--AAATT-TA--TTGTAGT-GAAAC-TTT-GCA--ATGCTTTA-A-GCTTTAATCCTA------AAGAC-AAT-CGGCTC----ATT--T-GAAA--TTGATG-AAAG-ATT-AAC-GTA-C-AGT-A-G--AAA-GA-TG---------CAA-T-TT--C-----C-AAAA--TCCCGAA-TTTT-TA---AGTTCA-AAAATC-ACTAAT---C-AT----AG-AA----G-----A-CT-GCTTACCTATGAGTTCTTTTTT--GCC-AGGCTAAA-TG-A-TAGGATTGCA-TATA--TCC---------C---T-AAT-TG--A--GT-TGGTTAA---A-GAG--GTCAGCGAGATATCCAAA-GTC-CCACCCGTCAT-CGCCTTAAAACTTTGC-G--AAGATTC--ATCAAGCGGAGG-TACCAAAAAAAAAAT--TGGATCCAGTTAAACACGG--AGCAA-GTTTTTC----AAATG-ATGC--CAT-G-ACAAGATACA-CGAAGGTCA-----------ATG-A-TG-CCTG-A-TAAT--CGCGGCCGA-GCAAC--TTAG--TTTTATAATCTAGGAAATCAGCTGACAAATGTGGTTT-TT----A---TTT-AACA------GTTTTCATGTGT
gi|4 : TTTTTATTTAA-CAGTTTT--CA-TGTG-TGATCGTGT-TT-CCAGA-GAATTAATA-AATATAGTAAT--T-TGC---TTCTGT---TTGGGGA--AAAATTGC---AACTT--TGTATT--AAATAT-AT-AGGG-gatcgtgtttccagagaattaataaatatagtaatttgcttctgtttggggaaaaattgcaactttgtattaaatatatagggggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : ccgggtatccggatccaacgaccgcggagggatccaaagcctgcggacattgttcttagcagggtacggatgcatcatatacttcaacacttgtttccctgatgacaaatttattgtagtgaaactttgcaatgctttaagctttaatcctaaagacaatcggctcatttgaaattgatgaaagattaacgtacagtagaaagatgcaatttccaaaatcccgaatttttaagttcaaaaatcactaatcatagaagactgcttacctatgagttcttttttgccaggctaaatgataggattgcatatatccctaattgagttggttaaagaggtcagcgagatatccaaagtcccacccgtcatcgccttaaaactttgcgaagattcatcaagcggaggtaccaaaaaaaaaattggatccagttaaacacggagcaagtttttcaaatgatgccatgacaagatacacgaaggtcaatgatgcctgataatcgcggccgagcaacttagttttataatctaggaaatcagctgacaaatgtggACCGGGTATCCGGAT-CCAACGT-CC-CACCTAGGG-TCCAA----C-CC--CGGAG--C-CA-------AATTCAAAA-AA-----------CATC--GTTCTTAGCA-ATGTA---GG--AATAATCGT-ATTTT-CA-T--TACT--TTTG-----ACAGC-A--TTT-TCC-GA--G--AC--AA-TT-TA--TT-TGATTG-AAC-TTT-GCA--ATG-TT-A-A-GCTTTAATTCTA------AA-AC-AAT-CG--CC----A-T----AAAT--TTGATG-AAAG-ATTTAAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-AT--CGTTT-C-AAAA--ACCCGAAATTTT-TA---AGTTCA-AAA--C-AC-ATTTAGC-AT----AG-AA--TTG-------CT-GC-TACCT-TGAGTCCTATTTT--GCC-A--TCAA--TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TGA---A-ATG--GT---CGAAA---CCAAAAGTC-CCACCCG---T-CACTTCAAAA-T--GC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAG-AAACCACGG--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----CAA-CGGAG--CA-----------ATGTA-T--CCTG-A-TAA---CAC----GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGAC-AATGTGGGTT-TTAACAGTTTTTA-AACA------ATggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : TTTTAA--CAGTTTT--TA--A-A-CAATC----------AGA-GAATTA-TG-AATAAAAT-----T-TAC--ATTCTGTATATT-GGGA--AAAATCGC---GA-TTAATATGTcagagaattatgaataaaatttacattctgtatattgggaaaaatcgcgattaatatgttctattgtcatgaaatacttttagcacaacgctgt
gi|6 : accgggtatccggatccaacgtcccacctagggtccaaccccggagccaaattcaaaaaacatcgttcttagcaatgtaggaataatcgtattttcattacttttgacagcattttccgagacaatttatttgattgaactttgcaatgttaagctttaattctaaaacaatcgccataaatttgatgaaagatttaacgacagtagcaaacaatgaactgacaaatatcgtttcaaaaacccgaaatttttaagttcaaaacacatttagcatagaattgctgctaccttgagtcctattttgccatcaatgatagattgatatatccctaattatttgtgaaatggtcgaaaccaaaagtcccacccgtcacttcaaaatgcgaagttcattgaaggggtagaaaaattttggatccagaaaccacggagcaagtttttcaaatgatccataaacaacggagcaatgtatcctgataacacgagcaacttagttttatatctaggaaatcagctgacaatgtgggGGTATC-GGAT-CCAACGT-CC--ACGGAGGGATGCCA--AGC-CCG-CGGAG--C-CA-------AATC-------------AAA-AACATC--GTTCTTAGCA-T-GTA---GA--AATAATCTTGA--TTTCA-TA-TAC---TTCG-----ACA-CAA--TTT-TCCTGAT-G--AC--AAATTATA--TT-TGAT-G-AAC-TTT--CA--ATG-TTTA-ATGCTTTAAT-TAA------AA-AC-AAT-CGC-CC----A-T--T-AAGATCTTGATGAAAAG-ATT-AAC-G-A-C-AGTGA-GC-CAACAA--GAT-GCG--ACAA-T-TC--CATTC----AAA--ACCCGAT-ATTA-TT---AATTCA-AAA--C-AC-AAT-AGC-AT----AG-AGATGTG-----G--T-GC-TACCT-TTAGTCCTTTTTT--G-C-A--C--AA-TG-A-TA--ATTG-A-TAAT--TCC---------C---T---------------------------------------GAA---CCAAA-GTC-CCACCCG---T---CTTCAAAA-TTT-C-G--AAG-TTC--ATTGA--AGGGG-T----AGACAATCTT--TGGATCCAGATAACC-CGGAAAGCAATG-ATTTCTCGAAAATGCAT-T--CCTAA-A-A----ACACCGGAG--CA-----------ATG-A-TACCCTG-ATTAACTGCGTG---AA-GCAAC--TTAG--TTTTAT-ATCT-GGAAATCAGCTGAC-AATGTGGTGT-TT----tctattgtcatgaaatacttttagcacaacgctgt
gi|6 : -TT-CCAAA-GAATT--TA-AATAAAAT--C--T-TAC--A-TCTGT---TT--GGA--AAAATTCC---GA--T--TATATG--AAATA------GGG-ACGTaaaacaattccaaagaatttaaataaaatcttacatctgtttggaaaaattccgattatatgaaatagggacgtttaatcaatgcaatacttttagcgaaacgctgac
gi|7 : ggtatcggatccaacgtccacggagggatgccaagcccgcggagccaaatcaaaaacatcgttcttagcatgtagaaataatcttgatttcatatacttcgacacaattttcctgatgacaaattatatttgatgaactttcaatgtttaatgctttaattaaaaacaatcgcccattaagatcttgatgaaaagattaacgacagtgagccaacaagatgcgacaattccattcaaaacccgatattattaattcaaaacacaatagcatagagatgtggtgctacctttagtccttttttgcacaatgataattgataattccctgaaccaaagtcccacccgtcttcaaaatttcgaagttcattgaaggggtagacaatctttggatccagataacccggaaagcaatgatttctcgaaaatgcattcctaaaaacaccggagcaatgataccctgattaactgcgtgaagcaacttagttttatatctggaaatcagctgacaatgtggtgtttaaaacaaACCGGGTATCCGGAT-CCAACGT-CN-NNNNNNNNNNNNNNN--NNN-NNN-NNNNN--N-NN-------NNNNNNNNN-NNNNN--NNN-NNNNNN--NNNNNNNNNN-N-NNN---NN--NNNNNNNNN-NNNNNNNN-NN-NNNN--NNNNNNNCGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CA--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-GAC-G-A-C-AGT-A-GC-TAACAA-TAAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCAAA-TTAT-TA---AGTTCA-AAA--C-AC-ACT-AGC-AT----AG-AA--ATG-----A-CT-GC-TACCT-TGAGTCCTGTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACTCG---T-CACTTCAAAA-TATGCGG--AAG-TTC--ATTGA--AGGGG-T----ATAAttaatcaatgcaatacttttagcgaaacgctgac
gi|8 : cCCGGAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCA-CGGAAGCC-CA-------AATTCAAAA-A----------AACATC--GTTCTTAGCA-T-GTAC--GG--GATAATC-T-ATTTTTCA-TA-TAC---TTTG-----ACA-CAT--TTT-TCCTGA--G--ACCAAAATT-TA--TT-TGAT-G--AC-TTT-GCA--ATG--TTA-A-GC-TTAAT-CTA------AA-ACAAAT-CG--CC----A-T--TAAAAA--TTGATG-AAAG-ATT-AAC-G---C-AGT-ATGC-AAACAA-TGAAGCTGTAACAAAT-TC--CATTT-C-AAAA--ACCCGA---TTATTA---AG-TCATAAA--CAAC-AAT-AGCAAT----AG-AA--GTG-----GCCT-GC-TACCT-TGAGTC---TTTT--GCC-A--TCAAA-TG-A-TG-ACTTG-ATTATAACTCC---------C---TAAAT-T---T--TT-TG--TGA---G-AAACTGT---CGAAA---CCAGA-GTC-CAACCCG---TCCACTTCAAAA-TTTGC-GGCAAG-T
gi|9 : tatctcGGTATCCG-AT-CGACCGT-CT-CG--GAGG-ATC-AT--GAC-CTG-CGGAG--A-AA-------AAC-CAAAA-AAAAAGCAAA-AACAT---GTTTTTAGCA-G-GCA---AGGAAATAATCTT-ATTTTTCA-TA-TACT--TTTT-----ACA-C-T--TTT-CCCTGAT-G------AAATT-TA--TT---GT-G-AACATGT-GAG--ATT-ATTA-A--CTTTAGT-CTAG-----AA-AC-AAT-CG--CA----T-T--T-AAAA--TTGATGAAAAG-ATT-AAC-G-A---AGT-A-AG-AA-------AA-CTG--AT--TT-TT--CA-TT-A-AAAA--ACC--AA-TTTA-TA---AGTTC--AAA--C-AC-AA--AAC-ACGAGGAG-AG--ATGTATATA-CTAGC-TGTTT-TGA-TCC-TTTTT--GTC-A--TC-AA-TG-A-TG-GATTG-A-TATA--GTC---------C---T-AAT-T---A---T-TG--TTATTTACAAG--AT---TGAAA---CC-AA-GTCTCCATCCG---T-CGC-TCAAAA-ATTGC-G--AAG-TGC--ATTGA--AGGGc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GCTTCTGATGTGACTTGTGTATTCCTCATCCACATTCCACTAAAACAGTACTACC
Unaligned ( gi|23 ): TTCATATACTTCTCAGCAATTTTATTAGAAAATCTA
Alignments
lowQualScore : 11 44444444444444444 11111111 1111 111111 1111 1111111 1111111111111 1 111 1111 1111 1111 22222222222 11 1 222 1111111111 22222222222 1 11 1111 11111111 11111 111 2222 222 99999999999999999999999 1 1 1 1 333333333 11 5555555555 222 2222 44444444444444444 222 33333 11 1
lowQualScore : 2 2 66 0 555 2 2 33 55 444 2 33 55555555555555555 44 777 999 44 1 6 6 6 7777 66666666 3 3333 3 3 44 44 3 44 3 3 3 3 3 44 77 3 3 6 111111 3 3 3 77 6666 3 44 3 44 6 3 3 3 3 777 3 3 3 6 3 44 999 44 777 44 66 6 555 3 44 6 3 33 3 0000 3 55 6666666 3 7 3 1 44 3 44 3 3 3 3 3 6 3 77 4444444444444 3 3 888 44 3 44 2 555 3 44 888 2 555 3 3 0 555 3 3 3 44 3 88 55 4 8888 0 66 2 4 1 66 888 5555 4 3333 5 5 5 0000 5 66 33333333333 5 5 11 0 5 000 888 5 66 66 5 1 3 7 0 7777777777 66 77777777777 44 5 55 99 2222 6 1 77777777 5 5 5 22222 5 66 888 88 77 0 555 5 77 99 0000 6 7 333 0 33333333333333333333333 3 3 7 3 3 444444444 88 5555555555 333 8888 7 77777777777777777 7 333 7 33333 88 0 6 3
lowQualScore : . . .. . ... . . .. .. ... . .. ................. .. ... ... .. . . . . .... ........ . .... . . .. .. . .. . . . . . .. .. . . . ...... . . . .. .... . .. . .. . . . . . ... . . . . . .. ... .. ... .. .. . ... . .. . . .. . .... . .. ....... . . . . .. . .. . . . . . . . .. ............. . . ... .. . .. . ... . .. ... . ... . . . ... . . . .. . .. .. . .... . .. . . . .. ... .... . .... . . . .... . .. ........... . . .. . . ... ... . .. .. . . . . . .......... .. ........... .. . .. .. .... . . ........ . . . ..... . .. ... .. .. . ... . .. .. .... . . ... . ....................... . . . . . ......... .. .......... ... .... . ................. . ... . ..... .. . . .
lowQualScore : 5 5 00 1 666 5 5 44 77 444 3 77 11111111111111111 22 444 222 66 2 7 7 7 1111 33333333 3 1111 3 3 66 66 3 66 3 6 6 6 6 66 11 3 3 2 999999 1 1 1 33 5555 1 22 1 22 2 1 1 1 1 777 1 1 1 2 1 66 000 66 111 66 88 7 888 3 66 7 3 88 3 4444 3 00 7777777 6 3 6 2 66 3 66 2 3 3 3 3 7 3 99 6666666666666 3 3 555 22 1 22 1 444 1 22 555 7 444 1 1 2 444 1 1 1 22 3 66 00 0 5555 4 11 8 9 9 11 999 6666 4 2222 0 0 0 6666 0 99 88888888888 0 0 99 0 0 666 888 0 99 99 0 7 5 3 7 0000000000 66 66666666666 55 0 88 22 8888 7 0 00000000 7 0 0 00000 0 99 888 00 99 4 777 7 99 22 7777 7 3 333 7 00000000000000000000000 3 3 3 3 3 777777777 33 3333333333 333 3333 3 00000000000000000 3 333 3 33333 33 7 7 3
consensus : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--AAAAA-----AA---AAAACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------CGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
Reference ( family-3477 ) : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--AAAAA-----AA---AAAACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------CGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
gi|1 : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGGGGGATCCAA--TGA-CCA-CGGAG--C-AAA---ATTAAA--AAAAAC----AA---AAAACATC--GTTGCTAGCA-G-ATA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------TTCCA-A-T--TTT-TCCTGAT-G--AC--AAATT-CA--TT-TGAT-G-AAC-TTT-GCA--ATG-ATTA-A-GCTTTAAT-TAA------AA-AA-AAT-CG--CT----A-T--T-AAAA--TTGATG-AACA-ATT-AAC-A-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ATAATG-TT--CATTT-C-AAAA--ACCCGGA-TTTA-TT---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-CGAGTCCTTTTTT--GCC-A--CCAAA-TA-A-TA-TATTG-A-TATA--TCA---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTT-CCAACTG---T-CGCTTCAAAA-TTTGC-G--AAG-TTT--ATTGA--GAGGG-T----AGAACAATTT--TGGATCC-GTAAACCAAGG--AGCAA-G-TTTTC----AAATC-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATTTAAGAAATCAGCTGACAAATCCGGCTTGTT----GTTTTTT-----------GTTTTTGTTTGTTTGTTTATT-TATTTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---TGTT-ACAGA-GAATAA-TA-AATAAAAT--C--T-TAC--ATTCTAT---TT-GGGA--AAAATCGC---GA-TT--TGTGTC--AAATATCAT-GGGG-ACATAGGGGTGATATTTGG---TTTGCAATT----GATATTTTC--CC---ATTTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GT-ATT-----CAGAGCAATGG--CTAATA--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC-------AA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATATGGTTCCTGCA-ATA
gi|10 : GGGTATCCGGAT-CCAACGT-CC-AACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA----TTCAA--AAAA---------------CATC--GTTCTTAGCA-T-GTA---GG--A-TAATCTT-ATTTT-CA-TAATACT---TC------CGACA-C-A--TTT-TCCTGAT-AGAAC--AAATT-TAATTT-TGAT-G-AAC-TTTTGCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-CC-AAT-CG--TC----A-T--T-AAAA--TTGATG-AAAA-TTT-AAC-G-AGC-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TTCCCATTT-CAAAAA--ACCCGA---TTATTA---AGTTCA-AAA--CAAC-AAC-AGC-AT----AGAAA--GTG-----G-CT-GC-TAACT-TGAGTCC-TTTTT--GCCAA--TC-AA-TG-A-TA-GATTG-G-TATAC-TCC---------CACAT-AATATTAAA--TT-TG--TGG---A-AAG--GT---GAGAG---AGAGA-G--------CG---T-CACTTC--AA-TTTGC-G--
gi|11 : ---A--TT-TG--TTA---A-AAG---T---C--AA---CGAAA-GTC-CCACC-G---T-CGCTTC-AAA-TTTGC-G--AAG-TTCAAATTGA--AGGGGCT----AAAAAA--TT--TGGATCC-GTAAACCACGG--GACAA-G-TTTTTCA--AAATG-AT----CAT-A-A-A----ACA-CGGAG--CA-----------AT--A-T--CCTGAA-TAA---CACG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGTCAAGTGTGG----------GTTTTTTAAACA------GTTTTCAATTGT
gi|11 : TTTTTTAAACAGTTTT--CAATT-G-TGATC---T-TA-CCAGAAGAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-AGGA--AAAATTGCG--GA-TT--TGTATG--AAATAT-ATAGGGG-ACgatcttaccagaagaattataaataaaatcttacattctgtttaggaaaaattgcggatttgtatgaaatatataggggactgttctaatcgtgaaatactctcagcataaca
gi|12 : atttgttaaaagtcaacgaaagtcccaccgtcgcttcaaatttgcgaagttcaaattgaaggggctaaaaaatttggatccgtaaaccacgggacaagtttttcaaaatgatcataaaacacggagcaatatcctgaataacacggagcaacttagttttatatctaggaaatcagctgtcaagtgtgggA-TACAATAAAGT--CGATATACCCATTTTAA---TT-TGGACTAAAATGGCACAGA-TT--TGTGTGTCAAATATCAG-GGAGCATATAGGGGTGA-ATTTTGATATTCGCAATTTGGAGA-GGAG-CATT-------TTGTTTTACTTGTAT-GTAATGTGCTGGTGGACATGCGTCATTAACCCTAGAGGCCTGGAATTAATTGCCTCTCCATGCTTACACCAAATACGATTCAATAATACT--ATTACCAACAATAAATGAGGTAAT-TTGATCCTATTGTTCCATAATTG-GTAAAAAGTCATCTGATATGGTT-CTGCACATAtgttctaatcgtgaaatactctcagcataaca
gi|13 : gttgaaacatagtaaAGTCCTTTTT---GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT--G--TGA---A-ATG--GT---CGAA----CCAAA-GTC-CCACCCG---T-CACTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGAAAACC---G--AGCAA-------------------------AG-A-A-A----CCA-CGGAG--CACTCATTCACTTATG-A-T--CCCA-A--AATC-CACG---GA-GC-TT--TTAGTCTTTTCT-ATC
gi|14 : tt--ATG-ATTA-A-GCTTTGAT-CTA------AA-AC-AAT-CG--CC----A-T--T--AAA--TTGATG--AAG-ATT-AAC-G-A-C--GT-A-GC--AATA---GAA-CTG--ATTTTT-TT--CATTT---AAAA--ACCCGAA-TTTA-TA---AGTT-A-AAG--C--C-AAT-A-C-AT----GG-AA--GTG-----A----GCGTATC---GAGT-CTTATTT--GTC-A--T--AA-TGAA-TG-GATTG---TATA--TCTAATTTGACAC---T-AAT-T---ATTTT-TG--TTA---C-AAG--ATG--CG-AA---CC-AA-GT---CATGTG--------TTCAAAA-TTTGC-G--AAG-TTCT-ATTGA--AGGGG-T----AGAAAAaacattcaccgtacactaatgattctggatgacttgtatgtttattcaaaacatatgggatatccaat
gi|15 : CGGGTATTCG-ATGCCAAGGTACC-CG---AGGGATCCAA--AGCGCCGGCGGAG--A-CAA---ATTCCA--AAACA-----A--------CATC--GTTCTTAGCA-T-GTA---GG--AATAACTCT-ATATTTTATTA-TACC---TT------ATACA-C-A--TTT-TCCT-ATGG--AC---AGTT-TA--TT-TGAT-A-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC---TCCG--CC----A-T--T-AAAA--TTGATG-AAAGAATT-AACGG-A-CTAGT-A-GCAAAACAATTGAA-CT
gi|16 : ACCGGGTATCCGAAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTTAA--AA---------A---AAAACATC--GTTTTTAGCA-T-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TC------TGACA-C-A--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TG
gi|16 : TTT--TGGATCC-GTAAACCACGG--AGTGA-----TCC----AAATA-Agatcactccgtggtttacggatccaaaa
gi|17 : accgggtatccgaatccaacgtccacggagggatccaaagcccgcggagccaaatttaaaaaaaaacatcgtttttagcatgtaggaataatcttatttttcatatacttctgacacattttcctgatgacaaatCTTTAAT-CTA------AA-AT-AAT-CG--CC----A-T--T-AAAA--TTTGTG-AAAG-AAT-AAC-G-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCGAA-TTTT-AA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-A
gi|18 : TCAGAGT-CCAACGT-CC--GCGGAGGGATCCAA--TGA-CCG-CGGAG--C------------A--AAAAACC---AA---GGAACATCGTGTTTTTAGCA-g
gi|19 : GGCATCCGGAT-CCAACGT-CCACG-GGAGGGATCC-A--AGC-CCG-CGGAG--C-CAA---ATTCAA--gt
gi|2 : ccCCAGTTATCCGGAT-CCAACGT-CC--GCAGAGAGATCCAA--TGA-CCG-CGGAG--C-AAA---ATTTAA--AAAAA-----AA---A---CATC--GTTTATAGCA-G-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------TTACA-C-T--TTT-TCCTGAT-A--AC--AAATT-TA--TT-TGAT-G-AAA-TTT-GCA--ATG-ATTA-A-GCTTTGAT-TTA------AA-GC-AAT-CG--CT----A-T--T-AAAA--ATCATT-AAA---TC-AAC-G-A-C-AGT-A-GC-AAAAAA-TG---------------TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACTT-TGAGTCCTTTTTT--GCT-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TT--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--GAGGG-T----AGAAAAATTT--TGGATCC-GTAAACTACGA--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTTG--TTTTAT-ATTTAAGAAACCAGCT
gi|2 : TTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TTTCCAGA-GAATTA-TA-AATAAAAC--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-ATAGGGG-ACGTAGGGGTGATATTTTG---TTTGCAATT--------TTGTCATCCAGGA-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGGCATG-GTT-TT-----CAGAGCAATGG--CTAA-T--------ATGCCT---TCAA----GATTCAATAGTTCCAAATT----ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTCA-----TATC--ATACGGTTCCTGAA-ATAttttacagttttcatagtgatcttttccagagaattataaataaaaccttacattctgtttgggaaaaatcgcgatttgtgtgaaatatataggggacgtaggggtgatattttgtttgcaattttgtcatccaggacttgtttactgtattgtaatggctggtgggcatggttttcagagcaatggctaatatgccttcaagattcaatagttccaaattacaataataacatcgatattatcctaccatcgtgtcatatcatacggttcctgaaata
gi|21 : ccagttatccggatccaacgtccgcagagagatccaatgaccgcggagcaaaatttaaaaaaaaaacatcgtttatagcaggtaggaataatcttatttttcatatactttttacactttttcctgataacaaatttatttgatgaaatttgcaatgattaagctttgatttaaagcaatcgctattaaaaatcattaaatcaacgacagtagcaaaaaatgttcatttcaaaaacccgaatttataagttcaaaacacaatagcatagaagtgactgctactttgagtccttttttgctatcaaatgatagattgatatatccctaattattttttaaaaggtcgaaaccaaagtcccacccgtcgcttcaaaatttgcgaagttcattgagagggtagaaaaattttggatccgtaaactacgaagcaagtttttcaaatgatccataaaacacggagcaatgatcctgataacgcggagcaactttgttttatatttaagaaaccagcGGTATCCGGAT-CCAACGT-CC--ACGGAGG-ATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--
gi|22 : ACCGGGTATCCGGAT-CCAATGT--C-CACGGAGGGATCCAA--TGA-TCG-CGGAG--CACAA---
gi|3 : CGGGTATC--GAT-C-AACGT-CCGCACGG-GGGATCCAAGAAGC-CAG---GAG--C--AATATATTTAAGTAAAAATAAACAA---AAAACATC--GTTGCTA-CA-G-ATACGTGA--ACTTATCTTTATTTGTCAATAATACTAATTT------ACACA-A-T--TTTATGCTGAT-G--A---AAATT-CA--TT--GAT-G-AAC-TTT-GCATGAAG-TCGACA-GTTTTAAT-TTATGATCAAA-AA-AAT-CG--CCTCATA-TGAT-AAAT--TTGATG-AGCA-TTT-AA----A---AGT-A-G--AAACAACTGAA-CTG--ATAATGGTT--CATTTTC-AAAACAACCGGAT-TTTA-TGTAGAGTTAC-AAA--C-AC-AA--AGC-ATT---AG-AA--GTG-------CT-GC-TAC-T-CG-GTCCTTTTTTTAGCC-A--CCAAAATG-AATA-TATTGTA-TATA--TTC---------AA--T-AAT-T---A--TTATG--TAT---A-AAG--GT---CA-------CACA-GGT-TCACT-G---T--G-TTCAAAA-TTTGC-G--A-G-TTT--ATTGA--GAGGC-T----AGAAACATTTGTTGGACTCAAGAACCCAAGG--AGCTA-G-TTTTC----AAA-A-AT-CATCAT-ACA-A----ACA-CGCAT--CA-----------ATG-ACT--CCTGAA-TAA---CGCG---GAGGCAACTGTTGT--TTTTAT-ATTTA-GAAGTGATC-G--AAATTCGTCTT-AT----GAGCTGT-GGTAGATGATGTTTTGTTTTGTTTGCTTATTCTATCTTCCCTGTTC--CTCTTTTAACA-CA-GCT--TT---T-CT-TCATA-GA--TA-TG-AATATAA---C--T-TA---ATTCTAT---TT-
gi|4 : catctaaatcgcaggcaagtcatcttagaaacaCCGGGTATCCGGAT-CCAACG--AC-CGCGGAGGGATCCAA--AGC-CTG-CGGA--------------------------------------CATT--GTTCTTAGCAGG-GTA---CG--GATG----C-A----TCA-TA-TAC----TT------CAACA-C-TTGTTT-CCCTGAT-G--AC--AAATT-TA--TTGTAGT-GAAAC-TTT-GCA--ATGCTTTA-A-GCTTTAATCCTA------AAGAC-AAT-CGGCTC----ATT--T-GAAA--TTGATG-AAAG-ATT-AAC-GTA-C-AGT-A-G--AAA-GA-TG---------CAA-T-TT--C-----C-AAAA--TCCCGAA-TTTT-TA---AGTTCA-AAAATC-ACTAAT---C-AT----AG-AA----G-----A-CT-GCTTACCTATGAGTTCTTTTTT--GCC-AGGCTAAA-TG-A-TAGGATTGCA-TATA--TCC---------C---T-AAT-TG--A--GT-TGGTTAA---A-GAG--GTCAGCGAGATATCCAAA-GTC-CCACCCGTCAT-CGCCTTAAAACTTTGC-G--AAGATTC--ATCAAGCGGAGG-TACCAAAAAAAAAAT--TGGATCCAGTTAAACACGG--AGCAA-GTTTTTC----AAATG-ATGC--CAT-G-ACAAGATACA-CGAAGGTCA-----------ATG-A-TG-CCTG-A-TAAT--CGCGGCCGA-GCAAC--TTAG--TTTTATAATCTAGGAAATCAGCTGACAAATGTGGTTT-TT----A---TTT-AACA------GTTTTCATGTGT
gi|4 : TTTTTATTTAA-CAGTTTT--CA-TGTG-TGATCGTGT-TT-CCAGA-GAATTAATA-AATATAGTAAT--T-TGC---TTCTGT---TTGGGGA--AAAATTGC---AACTT--TGTATT--AAATAT-AT-AGGG-gatcgtgtttccagagaattaataaatatagtaatttgcttctgtttggggaaaaattgcaactttgtattaaatatatagggggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : ccgggtatccggatccaacgaccgcggagggatccaaagcctgcggacattgttcttagcagggtacggatgcatcatatacttcaacacttgtttccctgatgacaaatttattgtagtgaaactttgcaatgctttaagctttaatcctaaagacaatcggctcatttgaaattgatgaaagattaacgtacagtagaaagatgcaatttccaaaatcccgaatttttaagttcaaaaatcactaatcatagaagactgcttacctatgagttcttttttgccaggctaaatgataggattgcatatatccctaattgagttggttaaagaggtcagcgagatatccaaagtcccacccgtcatcgccttaaaactttgcgaagattcatcaagcggaggtaccaaaaaaaaaattggatccagttaaacacggagcaagtttttcaaatgatgccatgacaagatacacgaaggtcaatgatgcctgataatcgcggccgagcaacttagttttataatctaggaaatcagctgacaaatgtggACCGGGTATCCGGAT-CCAACGT-CC-CACCTAGGG-TCCAA----C-CC--CGGAG--C-CAA---ATTCAA--AAAA---------------CATC--GTTCTTAGCA-ATGTA---GG--AATAATCGT-ATTTT-CA-T--TACT---TT------TGACAGC-A--TTT-TCC-GA--G--AC--AA-TT-TA--TT-TGATTG-AAC-TTT-GCA--ATG-TT-A-A-GCTTTAATTCTA------AA-AC-AAT-CG--CC----A-T----AAAT--TTGATG-AAAG-ATTTAAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-AT--CGTTT-C-AAAA--ACCCGAAATTTT-TA---AGTTCA-AAA--C-AC-ATTTAGC-AT----AG-AA--TTG-------CT-GC-TACCT-TGAGTCCTATTTT--GCC-A--TCAA--TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TGA---A-ATG--GT---CGAAA---CCAAAAGTC-CCACCCG---T-CACTTCAAAA-T--GC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAG-AAACCACGG--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----CAA-CGGAG--CA-----------ATGTA-T--CCTG-A-TAA---CAC----GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGAC-AATGTGGGTT-TTAACAGTTTTTA-AACA------ATggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : TTTTAA--CAGTTTT--TA--A-A-CAATC----------AGA-GAATTA-TG-AATAAAAT-----T-TAC--ATTCTGTATATT-GGGA--AAAATCGC---GA-TTAATATGTcagagaattatgaataaaatttacattctgtatattgggaaaaatcgcgattaatatgttctattgtcatgaaatacttttagcacaacgctgt
gi|6 : accgggtatccggatccaacgtcccacctagggtccaaccccggagccaaattcaaaaaacatcgttcttagcaatgtaggaataatcgtattttcattacttttgacagcattttccgagacaatttatttgattgaactttgcaatgttaagctttaattctaaaacaatcgccataaatttgatgaaagatttaacgacagtagcaaacaatgaactgacaaatatcgtttcaaaaacccgaaatttttaagttcaaaacacatttagcatagaattgctgctaccttgagtcctattttgccatcaatgatagattgatatatccctaattatttgtgaaatggtcgaaaccaaaagtcccacccgtcacttcaaaatgcgaagttcattgaaggggtagaaaaattttggatccagaaaccacggagcaagtttttcaaatgatccataaacaacggagcaatgtatcctgataacacgagcaacttagttttatatctaggaaatcagctgacaatgtgggGGTATC-GGAT-CCAACGT-CC--ACGGAGGGATGCCA--AGC-CCG-CGGAG--C-CAA---ATC----------------A---AAAACATC--GTTCTTAGCA-T-GTA---GA--AATAATCTTGA--TTTCA-TA-TAC----TT------CGACA-CAA--TTT-TCCTGAT-G--AC--AAATTATA--TT-TGAT-G-AAC-TTT--CA--ATG-TTTA-ATGCTTTAAT-TAA------AA-AC-AAT-CGC-CC----A-T--T-AAGATCTTGATGAAAAG-ATT-AAC-G-A-C-AGTGA-GC-CAACAA--GAT-GCG--ACAA-T-TC--CATTC----AAA--ACCCGAT-ATTA-TT---AATTCA-AAA--C-AC-AAT-AGC-AT----AG-AGATGTG-----G--T-GC-TACCT-TTAGTCCTTTTTT--G-C-A--C--AA-TG-A-TA--ATTG-A-TAAT--TCC---------C---T---------------------------------------GAA---CCAAA-GTC-CCACCCG---T---CTTCAAAA-TTT-C-G--AAG-TTC--ATTGA--AGGGG-T----AGACAATCTT--TGGATCCAGATAACC-CGGAAAGCAATG-ATTTCTCGAAAATGCAT-T--CCTAA-A-A----ACACCGGAG--CA-----------ATG-A-TACCCTG-ATTAACTGCGTG---AA-GCAAC--TTAG--TTTTAT-ATCT-GGAAATCAGCTGAC-AATGTGGTGT-TT----tctattgtcatgaaatacttttagcacaacgctgt
gi|6 : -TT-CCAAA-GAATT--TA-AATAAAAT--C--T-TAC--A-TCTGT---TT--GGA--AAAATTCC---GA--T--TATATG--AAATA------GGG-ACGTaaaacaattccaaagaatttaaataaaatcttacatctgtttggaaaaattccgattatatgaaatagggacgtttaatcaatgcaatacttttagcgaaacgctgac
gi|7 : ggtatcggatccaacgtccacggagggatgccaagcccgcggagccaaatcaaaaacatcgttcttagcatgtagaaataatcttgatttcatatacttcgacacaattttcctgatgacaaattatatttgatgaactttcaatgtttaatgctttaattaaaaacaatcgcccattaagatcttgatgaaaagattaacgacagtgagccaacaagatgcgacaattccattcaaaacccgatattattaattcaaaacacaatagcatagagatgtggtgctacctttagtccttttttgcacaatgataattgataattccctgaaccaaagtcccacccgtcttcaaaatttcgaagttcattgaaggggtagacaatctttggatccagataacccggaaagcaatgatttctcgaaaatgcattcctaaaaacaccggagcaatgataccctgattaactgcgtgaagcaacttagttttatatctggaaatcagctgacaatgtggtgtttaaaacaaACCGGGTATCCGGAT-CCAACGT-CN-NNNNNNNNNNNNNNN--NNN-NNN-NNNNN--N-NNN---NNNNNN--NNNNN-----NN---NNNNNNNN--NNNNNNNNNN-N-NNN---NN--NNNNNNNNN-NNNNNNNN-NN-NNNN---NNNNNNNNCGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CA--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-GAC-G-A-C-AGT-A-GC-TAACAA-TAAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCAAA-TTAT-TA---AGTTCA-AAA--C-AC-ACT-AGC-AT----AG-AA--ATG-----A-CT-GC-TACCT-TGAGTCCTGTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACTCG---T-CACTTCAAAA-TATGCGG--AAG-TTC--ATTGA--AGGGG-T----ATAAttaatcaatgcaatacttttagcgaaacgctgac
gi|8 : cCCGGAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCA-CGGAAGCC-CAA---ATTCAA--AA--------------AAACATC--GTTCTTAGCA-T-GTAC--GG--GATAATC-T-ATTTTTCA-TA-TACT---TT-------GACA-CAT--TTT-TCCTGA--G--ACCAAAATT-TA--TT-TGAT-G--AC-TTT-GCA--ATG--TTA-A-GC-TTAAT-CTA------AA-ACAAAT-CG--CC----A-T--TAAAAA--TTGATG-AAAG-ATT-AAC-G---C-AGT-ATGC-AAACAA-TGAAGCTGTAACAAAT-TC--CATTT-C-AAAA--ACCCGA---TTATTA---AG-TCATAAA--CAAC-AAT-AGCAAT----AG-AA--GTG-----GCCT-GC-TACCT-TGAGTC---TTTT--GCC-A--TCAAA-TG-A-TG-ACTTG-ATTATAACTCC---------C---TAAAT-T---T--TT-TG--TGA---G-AAACTGT---CGAAA---CCAGA-GTC-CAACCCG---TCCACTTCAAAA-TTTGC-GGCAAG-T
gi|9 : tatctcGGTATCCG-AT-CGACCGT-CT-CG--GAGG-ATC-AT--GAC-CTG-CGGAG--A-AAA---AC-CAA--AAAAA-----AAGCAAAAACAT---GTTTTTAGCA-G-GCA---AGGAAATAATCTT-ATTTTTCA-TA-TACT---TT------TTACA-C-T--TTT-CCCTGAT-G------AAATT-TA--TT---GT-G-AACATGT-GAG--ATT-ATTA-A--CTTTAGT-CTAG-----AA-AC-AAT-CG--CA----T-T--T-AAAA--TTGATGAAAAG-ATT-AAC-G-A---AGT-A-AG-AA-------AA-CTG--AT--TT-TT--CA-TT-A-AAAA--ACC--AA-TTTA-TA---AGTTC--AAA--C-AC-AA--AAC-ACGAGGAG-AG--ATGTATATA-CTAGC-TGTTT-TGA-TCC-TTTTT--GTC-A--TC-AA-TG-A-TG-GATTG-A-TATA--GTC---------C---T-AAT-T---A---T-TG--TTATTTACAAG--AT---TGAAA---CC-AA-GTCTCCATCCG---T-CGC-TCAAAA-ATTGC-G--AAG-TGC--ATTGA--AGGGc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GCTTCTGATGTGACTTGTGTATTCCTCATCCACATTCCACTAAAACAGTACTACC
Unaligned ( gi|23 ): TTCATATACTTCTCAGCAATTTTATTAGAAAATCTA
Alignments
lowQualScore : 11 44444444444444444 11111111 1111 111111 1111 1111111 1111111111111 1 111 1111 1111 1111 22222222222 11 1 222 1111111111 22222222222 1 11 1111 11111111 11111 111 2222 222 99999999999999999999999 1 1 1 1 333333333 11 5555555555 222 2222 44444444444444444 222 33333 11 1
lowQualScore : 2 2 66 0 555 2 2 33 55 444 2 33 55555555555555555 44 777 999 44 1 6 6 6 7777 66666666 3 3333 3 3 44 44 3 44 3 3 3 3 3 44 77 3 3 6 111111 3 3 3 77 6666 3 44 3 44 6 3 3 3 3 777 3 3 3 6 3 44 999 44 777 44 66 6 555 3 44 6 3 33 3 0000 3 55 6666666 3 7 3 1 44 3 44 3 3 3 3 3 6 3 77 4444444444444 3 3 888 44 3 44 2 555 3 44 888 2 555 3 3 0 555 3 3 3 44 3 88 55 4 8888 0 66 2 4 1 66 888 5555 4 3333 5 5 5 0000 5 66 33333333333 5 5 11 0 5 000 888 5 66 66 5 1 3 7 0 7777777777 66 77777777777 44 5 55 99 2222 6 1 77777777 5 5 5 22222 5 66 888 88 77 0 555 5 77 99 0000 6 7 333 0 33333333333333333333333 3 3 7 3 3 444444444 88 5555555555 333 8888 7 77777777777777777 7 333 7 33333 88 0 6 3
lowQualScore : . . .. . ... . . .. .. ... . .. ................. .. ... ... .. . . . . .... ........ . .... . . .. .. . .. . . . . . .. .. . . . ...... . . . .. .... . .. . .. . . . . . ... . . . . . .. ... .. ... .. .. . ... . .. . . .. . .... . .. ....... . . . . .. . .. . . . . . . . .. ............. . . ... .. . .. . ... . .. ... . ... . . . ... . . . .. . .. .. . .... . .. . . . .. ... .... . .... . . . .... . .. ........... . . .. . . ... ... . .. .. . . . . . .......... .. ........... .. . .. .. .... . . ........ . . . ..... . .. ... .. .. . ... . .. .. .... . . ... . ....................... . . . . . ......... .. .......... ... .... . ................. . ... . ..... .. . . .
lowQualScore : 5 5 00 1 666 5 5 44 77 444 3 77 11111111111111111 22 444 222 66 2 7 7 7 1111 33333333 3 1111 3 3 66 66 3 66 3 6 6 6 6 66 11 3 3 2 999999 1 1 1 33 5555 1 22 1 22 2 1 1 1 1 777 1 1 1 2 1 66 000 66 111 66 88 7 888 3 66 7 3 88 3 4444 3 00 7777777 6 3 6 2 66 3 66 2 3 3 3 3 7 3 99 6666666666666 3 3 555 22 1 22 1 444 1 22 555 7 444 1 1 2 444 1 1 1 22 3 66 00 0 5555 4 11 8 9 9 11 999 6666 4 2222 0 0 0 6666 0 99 88888888888 0 0 99 0 0 666 888 0 99 99 0 7 5 3 7 0000000000 66 66666666666 55 0 88 22 8888 7 0 00000000 7 0 0 00000 0 99 888 00 99 4 777 7 99 22 7777 7 3 333 7 00000000000000000000000 3 3 3 3 3 777777777 33 3333333333 333 3333 3 00000000000000000 3 333 3 33333 33 7 7 3
consensus : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--AAAAA-----AA---AAAACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------CGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
Reference ( family-3477 ) : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--AAAAA-----AA---AAAACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------CGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
gi|1 : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGGGGGATCCAA--TGA-CCA-CGGAG--C-AAA---ATTAAA--AAAAAC----AA---AAAACATC--GTTGCTAGCA-G-ATA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------TTCCA-A-T--TTT-TCCTGAT-G--AC--AAATT-CA--TT-TGAT-G-AAC-TTT-GCA--ATG-ATTA-A-GCTTTAAT-TAA------AA-AA-AAT-CG--CT----A-T--T-AAAA--TTGATG-AACA-ATT-AAC-A-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ATAATG-TT--CATTT-C-AAAA--ACCCGGA-TTTA-TT---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-CGAGTCCTTTTTT--GCC-A--CCAAA-TA-A-TA-TATTG-A-TATA--TCA---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTT-CCAACTG---T-CGCTTCAAAA-TTTGC-G--AAG-TTT--ATTGA--GAGGG-T----AGAACAATTT--TGGATCC-GTAAACCAAGG--AGCAA-G-TTTTC----AAATC-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATTTAAGAAATCAGCTGACAAATCCGGCTTGTT----GTTTTTT-----------GTTTTTGTTTGTTTGTTTATT-TATTTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---TGTT-ACAGA-GAATAA-TA-AATAAAAT--C--T-TAC--ATTCTAT---TT-GGGA--AAAATCGC---GA-TT--TGTGTC--AAATATCAT-GGGG-ACATAGGGGTGATATTTGG---TTTGCAATT----GATATTTTC--CC---ATTTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GT-ATT-----CAGAGCAATGG--CTAATA--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC-------AA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATATGGTTCCTGCA-ATA
gi|10 : GGGTATCCGGAT-CCAACGT-CC-AACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA----TTCAA--AAAA---------------CATC--GTTCTTAGCA-T-GTA---GG--A-TAATCTT-ATTTT-CA-TAATACT---TC------CGACA-C-A--TTT-TCCTGAT-AGAAC--AAATT-TAATTT-TGAT-G-AAC-TTTTGCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-CC-AAT-CG--TC----A-T--T-AAAA--TTGATG-AAAA-TTT-AAC-G-AGC-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TTCCCATTT-CAAAAA--ACCCGA---TTATTA---AGTTCA-AAA--CAAC-AAC-AGC-AT----AGAAA--GTG-----G-CT-GC-TAACT-TGAGTCC-TTTTT--GCCAA--TC-AA-TG-A-TA-GATTG-G-TATAC-TCC---------CACAT-AATATTAAA--TT-TG--TGG---A-AAG--GT---GAGAG---AGAGA-G--------CG---T-CACTTC--AA-TTTGC-G--
gi|11 : ---A--TT-TG--TTA---A-AAG---T---C--AA---CGAAA-GTC-CCACC-G---T-CGCTTC-AAA-TTTGC-G--AAG-TTCAAATTGA--AGGGGCT----AAAAAA--TT--TGGATCC-GTAAACCACGG--GACAA-G-TTTTTCA--AAATG-AT----CAT-A-A-A----ACA-CGGAG--CA-----------AT--A-T--CCTGAA-TAA---CACG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGTCAAGTGTGG----------GTTTTTTAAACA------GTTTTCAATTGT
gi|11 : TTTTTTAAACAGTTTT--CAATT-G-TGATC---T-TA-CCAGAAGAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-AGGA--AAAATTGCG--GA-TT--TGTATG--AAATAT-ATAGGGG-ACgatcttaccagaagaattataaataaaatcttacattctgtttaggaaaaattgcggatttgtatgaaatatataggggactgttctaatcgtgaaatactctcagcataaca
gi|12 : atttgttaaaagtcaacgaaagtcccaccgtcgcttcaaatttgcgaagttcaaattgaaggggctaaaaaatttggatccgtaaaccacgggacaagtttttcaaaatgatcataaaacacggagcaatatcctgaataacacggagcaacttagttttatatctaggaaatcagctgtcaagtgtgggA-TACAATAAAGT--CGATATACCCATTTTAA---TT-TGGACTAAAATGGCACAGA-TT--TGTGTGTCAAATATCAG-GGAGCATATAGGGGTGA-ATTTTGATATTCGCAATTTGGAGA-GGAG-CATT-------TTGTTTTACTTGTAT-GTAATGTGCTGGTGGACATGCGTCATTAACCCTAGAGGCCTGGAATTAATTGCCTCTCCATGCTTACACCAAATACGATTCAATAATACT--ATTACCAACAATAAATGAGGTAAT-TTGATCCTATTGTTCCATAATTG-GTAAAAAGTCATCTGATATGGTT-CTGCACATAtgttctaatcgtgaaatactctcagcataaca
gi|13 : gttgaaacatagtaaAGTCCTTTTT---GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT--G--TGA---A-ATG--GT---CGAA----CCAAA-GTC-CCACCCG---T-CACTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGAAAACC---G--AGCAA-------------------------AG-A-A-A----CCA-CGGAG--CACTCATTCACTTATG-A-T--CCCA-A--AATC-CACG---GA-GC-TT--TTAGTCTTTTCT-ATC
gi|14 : tt--ATG-ATTA-A-GCTTTGAT-CTA------AA-AC-AAT-CG--CC----A-T--T--AAA--TTGATG--AAG-ATT-AAC-G-A-C--GT-A-GC--AATA---GAA-CTG--ATTTTT-TT--CATTT---AAAA--ACCCGAA-TTTA-TA---AGTT-A-AAG--C--C-AAT-A-C-AT----GG-AA--GTG-----A----GCGTATC---GAGT-CTTATTT--GTC-A--T--AA-TGAA-TG-GATTG---TATA--TCTAATTTGACAC---T-AAT-T---ATTTT-TG--TTA---C-AAG--ATG--CG-AA---CC-AA-GT---CATGTG--------TTCAAAA-TTTGC-G--AAG-TTCT-ATTGA--AGGGG-T----AGAAAAaacattcaccgtacactaatgattctggatgacttgtatgtttattcaaaacatatgggatatccaat
gi|15 : CGGGTATTCG-ATGCCAAGGTACC-CG---AGGGATCCAA--AGCGCCGGCGGAG--A-CAA---ATTCCA--AAACA-----A--------CATC--GTTCTTAGCA-T-GTA---GG--AATAACTCT-ATATTTTATTA-TACC---TT------ATACA-C-A--TTT-TCCT-ATGG--AC---AGTT-TA--TT-TGAT-A-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC---TCCG--CC----A-T--T-AAAA--TTGATG-AAAGAATT-AACGG-A-CTAGT-A-GCAAAACAATTGAA-CT
gi|16 : ACCGGGTATCCGAAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTTAA--AA---------A---AAAACATC--GTTTTTAGCA-T-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TC------TGACA-C-A--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TG
gi|16 : TTT--TGGATCC-GTAAACCACGG--AGTGA-----TCC----AAATA-Agatcactccgtggtttacggatccaaaa
gi|17 : accgggtatccgaatccaacgtccacggagggatccaaagcccgcggagccaaatttaaaaaaaaacatcgtttttagcatgtaggaataatcttatttttcatatacttctgacacattttcctgatgacaaatCTTTAAT-CTA------AA-AT-AAT-CG--CC----A-T--T-AAAA--TTTGTG-AAAG-AAT-AAC-G-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCGAA-TTTT-AA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-A
gi|18 : TCAGAGT-CCAACGT-CC--GCGGAGGGATCCAA--TGA-CCG-CGGAG--C------------A--AAAAACC---AA---GGAACATCGTGTTTTTAGCA-g
gi|19 : GGCATCCGGAT-CCAACGT-CCACG-GGAGGGATCC-A--AGC-CCG-CGGAG--C-CAA---ATTCAA--gt
gi|2 : ccCCAGTTATCCGGAT-CCAACGT-CC--GCAGAGAGATCCAA--TGA-CCG-CGGAG--C-AAA---ATTTAA--AAAAA-----AA---A---CATC--GTTTATAGCA-G-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------TTACA-C-T--TTT-TCCTGAT-A--AC--AAATT-TA--TT-TGAT-G-AAA-TTT-GCA--ATG-ATTA-A-GCTTTGAT-TTA------AA-GC-AAT-CG--CT----A-T--T-AAAA--ATCATT-AAA---TC-AAC-G-A-C-AGT-A-GC-AAAAAA-TG---------------TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACTT-TGAGTCCTTTTTT--GCT-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TT--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--GAGGG-T----AGAAAAATTT--TGGATCC-GTAAACTACGA--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTTG--TTTTAT-ATTTAAGAAACCAGCT
gi|2 : TTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TTTCCAGA-GAATTA-TA-AATAAAAC--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-ATAGGGG-ACGTAGGGGTGATATTTTG---TTTGCAATT--------TTGTCATCCAGGA-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGGCATG-GTT-TT-----CAGAGCAATGG--CTAA-T--------ATGCCT---TCAA----GATTCAATAGTTCCAAATT----ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTCA-----TATC--ATACGGTTCCTGAA-ATAttttacagttttcatagtgatcttttccagagaattataaataaaaccttacattctgtttgggaaaaatcgcgatttgtgtgaaatatataggggacgtaggggtgatattttgtttgcaattttgtcatccaggacttgtttactgtattgtaatggctggtgggcatggttttcagagcaatggctaatatgccttcaagattcaatagttccaaattacaataataacatcgatattatcctaccatcgtgtcatatcatacggttcctgaaata
gi|21 : ccagttatccggatccaacgtccgcagagagatccaatgaccgcggagcaaaatttaaaaaaaaaacatcgtttatagcaggtaggaataatcttatttttcatatactttttacactttttcctgataacaaatttatttgatgaaatttgcaatgattaagctttgatttaaagcaatcgctattaaaaatcattaaatcaacgacagtagcaaaaaatgttcatttcaaaaacccgaatttataagttcaaaacacaatagcatagaagtgactgctactttgagtccttttttgctatcaaatgatagattgatatatccctaattattttttaaaaggtcgaaaccaaagtcccacccgtcgcttcaaaatttgcgaagttcattgagagggtagaaaaattttggatccgtaaactacgaagcaagtttttcaaatgatccataaaacacggagcaatgatcctgataacgcggagcaactttgttttatatttaagaaaccagcGGTATCCGGAT-CCAACGT-CC--ACGGAGG-ATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--
gi|22 : ACCGGGTATCCGGAT-CCAATGT--C-CACGGAGGGATCCAA--TGA-TCG-CGGAG--CACAA---
gi|3 : CGGGTATC--GAT-C-AACGT-CCGCACGG-GGGATCCAAGAAGC-CAG---GAG--C--AATATATTTAAGTAAAAATAAACAA---AAAACATC--GTTGCTA-CA-G-ATACGTGA--ACTTATCTTTATTTGTCAATAATACTAATTT------ACACA-A-T--TTTATGCTGAT-G--A---AAATT-CA--TT--GAT-G-AAC-TTT-GCATGAAG-TCGACA-GTTTTAAT-TTATGATCAAA-AA-AAT-CG--CCTCATA-TGAT-AAAT--TTGATG-AGCA-TTT-AA----A---AGT-A-G--AAACAACTGAA-CTG--ATAATGGTT--CATTTTC-AAAACAACCGGAT-TTTA-TGTAGAGTTAC-AAA--C-AC-AA--AGC-ATT---AG-AA--GTG-------CT-GC-TAC-T-CG-GTCCTTTTTTTAGCC-A--CCAAAATG-AATA-TATTGTA-TATA--TTC---------AA--T-AAT-T---A--TTATG--TAT---A-AAG--GT---CA-------CACA-GGT-TCACT-G---T--G-TTCAAAA-TTTGC-G--A-G-TTT--ATTGA--GAGGC-T----AGAAACATTTGTTGGACTCAAGAACCCAAGG--AGCTA-G-TTTTC----AAA-A-AT-CATCAT-ACA-A----ACA-CGCAT--CA-----------ATG-ACT--CCTGAA-TAA---CGCG---GAGGCAACTGTTGT--TTTTAT-ATTTA-GAAGTGATC-G--AAATTCGTCTT-AT----GAGCTGT-GGTAGATGATGTTTTGTTTTGTTTGCTTATTCTATCTTCCCTGTTC--CTCTTTTAACA-CA-GCT--TT---T-CT-TCATA-GA--TA-TG-AATATAA---C--T-TA---ATTCTAT---TT-
gi|4 : catctaaatcgcaggcaagtcatcttagaaacaCCGGGTATCCGGAT-CCAACG--AC-CGCGGAGGGATCCAA--AGC-CTG-CGGA--------------------------------------CATT--GTTCTTAGCAGG-GTA---CG--GATG----C-A----TCA-TA-TAC----TT------CAACA-C-TTGTTT-CCCTGAT-G--AC--AAATT-TA--TTGTAGT-GAAAC-TTT-GCA--ATGCTTTA-A-GCTTTAATCCTA------AAGAC-AAT-CGGCTC----ATT--T-GAAA--TTGATG-AAAG-ATT-AAC-GTA-C-AGT-A-G--AAA-GA-TG---------CAA-T-TT--C-----C-AAAA--TCCCGAA-TTTT-TA---AGTTCA-AAAATC-ACTAAT---C-AT----AG-AA----G-----A-CT-GCTTACCTATGAGTTCTTTTTT--GCC-AGGCTAAA-TG-A-TAGGATTGCA-TATA--TCC---------C---T-AAT-TG--A--GT-TGGTTAA---A-GAG--GTCAGCGAGATATCCAAA-GTC-CCACCCGTCAT-CGCCTTAAAACTTTGC-G--AAGATTC--ATCAAGCGGAGG-TACCAAAAAAAAAAT--TGGATCCAGTTAAACACGG--AGCAA-GTTTTTC----AAATG-ATGC--CAT-G-ACAAGATACA-CGAAGGTCA-----------ATG-A-TG-CCTG-A-TAAT--CGCGGCCGA-GCAAC--TTAG--TTTTATAATCTAGGAAATCAGCTGACAAATGTGGTTT-TT----A---TTT-AACA------GTTTTCATGTGT
gi|4 : TTTTTATTTAA-CAGTTTT--CA-TGTG-TGATCGTGT-TT-CCAGA-GAATTAATA-AATATAGTAAT--T-TGC---TTCTGT---TTGGGGA--AAAATTGC---AACTT--TGTATT--AAATAT-AT-AGGG-gatcgtgtttccagagaattaataaatatagtaatttgcttctgtttggggaaaaattgcaactttgtattaaatatatagggggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : ccgggtatccggatccaacgaccgcggagggatccaaagcctgcggacattgttcttagcagggtacggatgcatcatatacttcaacacttgtttccctgatgacaaatttattgtagtgaaactttgcaatgctttaagctttaatcctaaagacaatcggctcatttgaaattgatgaaagattaacgtacagtagaaagatgcaatttccaaaatcccgaatttttaagttcaaaaatcactaatcatagaagactgcttacctatgagttcttttttgccaggctaaatgataggattgcatatatccctaattgagttggttaaagaggtcagcgagatatccaaagtcccacccgtcatcgccttaaaactttgcgaagattcatcaagcggaggtaccaaaaaaaaaattggatccagttaaacacggagcaagtttttcaaatgatgccatgacaagatacacgaaggtcaatgatgcctgataatcgcggccgagcaacttagttttataatctaggaaatcagctgacaaatgtggACCGGGTATCCGGAT-CCAACGT-CC-CACCTAGGG-TCCAA----C-CC--CGGAG--C-CAA---ATTCAA--AAAA---------------CATC--GTTCTTAGCA-ATGTA---GG--AATAATCGT-ATTTT-CA-T--TACT---TT------TGACAGC-A--TTT-TCC-GA--G--AC--AA-TT-TA--TT-TGATTG-AAC-TTT-GCA--ATG-TT-A-A-GCTTTAATTCTA------AA-AC-AAT-CG--CC----A-T----AAAT--TTGATG-AAAG-ATTTAAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAAAT-AT--CGTTT-C-AAAA--ACCCGAAATTTT-TA---AGTTCA-AAA--C-AC-ATTTAGC-AT----AG-AA--TTG-------CT-GC-TACCT-TGAGTCCTATTTT--GCC-A--TCAA--TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TGA---A-ATG--GT---CGAAA---CCAAAAGTC-CCACCCG---T-CACTTCAAAA-T--GC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAG-AAACCACGG--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----CAA-CGGAG--CA-----------ATGTA-T--CCTG-A-TAA---CAC----GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGAC-AATGTGGGTT-TTAACAGTTTTTA-AACA------ATggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : TTTTAA--CAGTTTT--TA--A-A-CAATC----------AGA-GAATTA-TG-AATAAAAT-----T-TAC--ATTCTGTATATT-GGGA--AAAATCGC---GA-TTAATATGTcagagaattatgaataaaatttacattctgtatattgggaaaaatcgcgattaatatgttctattgtcatgaaatacttttagcacaacgctgt
gi|6 : accgggtatccggatccaacgtcccacctagggtccaaccccggagccaaattcaaaaaacatcgttcttagcaatgtaggaataatcgtattttcattacttttgacagcattttccgagacaatttatttgattgaactttgcaatgttaagctttaattctaaaacaatcgccataaatttgatgaaagatttaacgacagtagcaaacaatgaactgacaaatatcgtttcaaaaacccgaaatttttaagttcaaaacacatttagcatagaattgctgctaccttgagtcctattttgccatcaatgatagattgatatatccctaattatttgtgaaatggtcgaaaccaaaagtcccacccgtcacttcaaaatgcgaagttcattgaaggggtagaaaaattttggatccagaaaccacggagcaagtttttcaaatgatccataaacaacggagcaatgtatcctgataacacgagcaacttagttttatatctaggaaatcagctgacaatgtgggGGTATC-GGAT-CCAACGT-CC--ACGGAGGGATGCCA--AGC-CCG-CGGAG--C-CAA---ATC----------------A---AAAACATC--GTTCTTAGCA-T-GTA---GA--AATAATCTTGA--TTTCA-TA-TAC----TT------CGACA-CAA--TTT-TCCTGAT-G--AC--AAATTATA--TT-TGAT-G-AAC-TTT--CA--ATG-TTTA-ATGCTTTAAT-TAA------AA-AC-AAT-CGC-CC----A-T--T-AAGATCTTGATGAAAAG-ATT-AAC-G-A-C-AGTGA-GC-CAACAA--GAT-GCG--ACAA-T-TC--CATTC----AAA--ACCCGAT-ATTA-TT---AATTCA-AAA--C-AC-AAT-AGC-AT----AG-AGATGTG-----G--T-GC-TACCT-TTAGTCCTTTTTT--G-C-A--C--AA-TG-A-TA--ATTG-A-TAAT--TCC---------C---T---------------------------------------GAA---CCAAA-GTC-CCACCCG---T---CTTCAAAA-TTT-C-G--AAG-TTC--ATTGA--AGGGG-T----AGACAATCTT--TGGATCCAGATAACC-CGGAAAGCAATG-ATTTCTCGAAAATGCAT-T--CCTAA-A-A----ACACCGGAG--CA-----------ATG-A-TACCCTG-ATTAACTGCGTG---AA-GCAAC--TTAG--TTTTAT-ATCT-GGAAATCAGCTGAC-AATGTGGTGT-TT----tctattgtcatgaaatacttttagcacaacgctgt
gi|6 : -TT-CCAAA-GAATT--TA-AATAAAAT--C--T-TAC--A-TCTGT---TT--GGA--AAAATTCC---GA--T--TATATG--AAATA------GGG-ACGTaaaacaattccaaagaatttaaataaaatcttacatctgtttggaaaaattccgattatatgaaatagggacgtttaatcaatgcaatacttttagcgaaacgctgac
gi|7 : ggtatcggatccaacgtccacggagggatgccaagcccgcggagccaaatcaaaaacatcgttcttagcatgtagaaataatcttgatttcatatacttcgacacaattttcctgatgacaaattatatttgatgaactttcaatgtttaatgctttaattaaaaacaatcgcccattaagatcttgatgaaaagattaacgacagtgagccaacaagatgcgacaattccattcaaaacccgatattattaattcaaaacacaatagcatagagatgtggtgctacctttagtccttttttgcacaatgataattgataattccctgaaccaaagtcccacccgtcttcaaaatttcgaagttcattgaaggggtagacaatctttggatccagataacccggaaagcaatgatttctcgaaaatgcattcctaaaaacaccggagcaatgataccctgattaactgcgtgaagcaacttagttttatatctggaaatcagctgacaatgtggtgtttaaaacaaACCGGGTATCCGGAT-CCAACGT-CN-NNNNNNNNNNNNNNN--NNN-NNN-NNNNN--N-NNN---NNNNNN--NNNNN-----NN---NNNNNNNN--NNNNNNNNNN-N-NNN---NN--NNNNNNNNN-NNNNNNNN-NN-NNNN---NNNNNNNNCGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CA--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-GAC-G-A-C-AGT-A-GC-TAACAA-TAAA-CTG--ACAAAT-TT--CATTT-C-AAAA--ACCCAAA-TTAT-TA---AGTTCA-AAA--C-AC-ACT-AGC-AT----AG-AA--ATG-----A-CT-GC-TACCT-TGAGTCCTGTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACTCG---T-CACTTCAAAA-TATGCGG--AAG-TTC--ATTGA--AGGGG-T----ATAAttaatcaatgcaatacttttagcgaaacgctgac
gi|8 : cCCGGAT-CCAACGT-CC--ACGGAGGGATCCAA--AGC-CCA-CGGAAGCC-CAA---ATTCAA--AA--------------AAACATC--GTTCTTAGCA-T-GTAC--GG--GATAATC-T-ATTTTTCA-TA-TACT---TT-------GACA-CAT--TTT-TCCTGA--G--ACCAAAATT-TA--TT-TGAT-G--AC-TTT-GCA--ATG--TTA-A-GC-TTAAT-CTA------AA-ACAAAT-CG--CC----A-T--TAAAAA--TTGATG-AAAG-ATT-AAC-G---C-AGT-ATGC-AAACAA-TGAAGCTGTAACAAAT-TC--CATTT-C-AAAA--ACCCGA---TTATTA---AG-TCATAAA--CAAC-AAT-AGCAAT----AG-AA--GTG-----GCCT-GC-TACCT-TGAGTC---TTTT--GCC-A--TCAAA-TG-A-TG-ACTTG-ATTATAACTCC---------C---TAAAT-T---T--TT-TG--TGA---G-AAACTGT---CGAAA---CCAGA-GTC-CAACCCG---TCCACTTCAAAA-TTTGC-GGCAAG-T
gi|9 : tatctcGGTATCCG-AT-CGACCGT-CT-CG--GAGG-ATC-AT--GAC-CTG-CGGAG--A-AAA---AC-CAA--AAAAA-----AAGCAAAAACAT---GTTTTTAGCA-G-GCA---AGGAAATAATCTT-ATTTTTCA-TA-TACT---TT------TTACA-C-T--TTT-CCCTGAT-G------AAATT-TA--TT---GT-G-AACATGT-GAG--ATT-ATTA-A--CTTTAGT-CTAG-----AA-AC-AAT-CG--CA----T-T--T-AAAA--TTGATGAAAAG-ATT-AAC-G-A---AGT-A-AG-AA-------AA-CTG--AT--TT-TT--CA-TT-A-AAAA--ACC--AA-TTTA-TA---AGTTC--AAA--C-AC-AA--AAC-ACGAGGAG-AG--ATGTATATA-CTAGC-TGTTT-TGA-TCC-TTTTT--GTC-A--TC-AA-TG-A-TG-GATTG-A-TATA--GTC---------C---T-AAT-T---A---T-TG--TTATTTACAAG--AT---TGAAA---CC-AA-GTCTCCATCCG---T-CGC-TCAAAA-ATTGC-G--AAG-TGC--ATTGA--AGGGc
blockSeqs : G A AC GAA G G GC AC TAT C GT AAATAAACAAAAAA GT GG CGT GA T T T A TAAT NNNNNNCG G TTG A G GA CA A AT G T A A T TG CT C T C TGATCA G A C GC TCAT T GA A TC A A T G T GC G T A T G TA TGG CC CA CA AA T TAG T AT A T TT A GAGG A AT TATATA A G A T TA A GG A A A A G T T AC AATTTGACAC A A TAA TT A GT G TTT C CT CAG G TAT A T TCA C C G GC A AA GC C ACCA GT A T A AA GT TCGA C CAT A C C AGAT C GT CTCATTCACTT T C AC A T CTG GCC G TG TC A G T A GTTTTAACA TT GGTAGATGAT CA C AA AA ATT C G GTGTTT A A C CGA A CC ATA GG CT ACA C AA TC ATA C T ATA TGGAGAGGAGCATT T T T T C CATTAACCC AA TTGCCTCTCC ACA ATAC A ACCAACAATAAATGAGG A TCC T AAAGT TG C C
blockSeqs : . . GC A . . . C . C . AAAAAGCAAAAA . AT C . C G A A T CG . AA . . . . . . . . . . . . T . . T G . . . C . . . . . A . . . . CT . . . C . . AT . TC . A T . . . A . C . T . . GC . T . T . . . A . . . . C . C CACA . . G . . . T . . . G A . . . . . . . . . T . . . . A A A . GT CA . GC . . . . . . . . . G A . TC . . . . . A A A CTTAT AG AAACA GT A . TGT . G TTTT . . . AAT . . . A . G . . . CAG . . . TTGTCATCCAGGAC . . . . . TTT . T . . . ACAATAA . . . . . . .
blockSeqs : . . A A . . . C . T . AAACCAAGGAA . T . . T . . . C AT . AT . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . C . . . . . . TT . C . A . . . . . . T . . . . G . . . T . . . A . . . . . . . AA . . . . . . G . . . . A . . . . . . . . . . . . . . A T A . GT . . C . . . . . . . . . . . . T . . . . . G A A TTTTT TT AACA CA . . TA . G TTA . . . C . . . T . . . . . ATA .
blockSeqs : . . C A . . . C . C . NNNNNNNNN . T . . T . . . T TG . A . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . A . . . . . . AT . C . A . . . . . . T . . . . A . . . T . . . A . . . . . . . C . . . . . . T . . . . A . . . . . . . . . . . . . . A T A . TG . . C . . . . . . . . . . . . . . . . . . G A . TGTTT . AACA . . CA . A TCT . . . C . . . G . . . . . AT .
blockSeqs : . . C T . . . C . T . AAAAAA . T . . T . . . T TT . A . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . C . . . . . . AT . C . T . . . . . . T . . . . A . . . T . . . A . . . . . . . C . . . . . . T . . . . A . . . . . . . . . . . . . . A G A . G . . T . . . . . . . . . . . . . . . . . . G . . . . . A . . . . . . C . . . G . . . . . . .
blockSeqs : . . C A . . . A . C . AAAAA . G . . G . . . T AC . A . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . C . . . . . . AT . C . A . . . . . . T . . . . A . . . T . . . A . . . . . . . C . . . . . . A . . . . G . . . . . . . . . . . . . . . T A . G . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . C T . . . C . T . AAAAA . G . . T . . . N CA . T . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . C . . . . . . AT . C . T . . . . . . T . . . . G . . . T . . . A . . . . . . . C . . . . . . A . . . . A . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . N A . . . C . C . ACAA . T . . N . . . T TG . T . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . C . . . . . . TT . C . A . . . . . . T . . . . A . . . T . . . . . . . . . . . C . . . . . . G . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C T . . . C . N . AAA . N . . T . . . T CG . A . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . C . . . . . . T . A . A . . . . . . T . . . . . . . . . . . . . . . . . . . . C . . . . . . T . . . . A . . . . . . . . . . . . .
blockSeqs : . . . A . . . N . C . AA . T . . . . . . . TT . T . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . C . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . C . C . AA . G . . . . . . . G . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . N . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . .
blockSeqs : . . . G . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : AAAAA************ G** TTTTT***** AACA******* TTT*****
originalCons : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--AAAAA-----AA---AAAACATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------CGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
finalCons : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCAA--AGC-CCG-CGGAG--C-CAA---ATTCAA--AAAAAAA------------CATC--GTTCTTAGCA-N-GTA---GG--AATAATCTT-ATTTTTCA-TA-TACT---TT------CGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CTA------AA-AC-AAT-CG--CC----A-T--T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAANT-TT--CATTT-C-AAAA--ACCCGAA-TTTA-TA---AGTTCA-AAA--C-AC-AAT-AGC-AT----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TCAAA-TG-A-TA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATTT--TGGATCCAGTAAACCACGG--AGCAAG--TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGTTTTT-----GTTTTTTAACA-------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATCTTT-----CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GCTTCTGATGTGACTTGTGTATTCCTCATCCACATTCCACTAAAACAGTACTACC
Unaligned ( gi|23 ): TTCATATACTTCTCAGCAATTTTATTAGAAAATCTA
Alignments
lowQualScore : 11 1111111 222222222222222222222222222 111 1111 11 1111111 111111111 1 111 1111 1111 1111 22222222222 11 1 222 1111111111 22222222222 1 11 1111 11111111 11111 111 2222 222 99999999999999999999999 1 1 1 1 333333333 11 5555555555 222 2222 44444444444444444 222 33333 11 1
lowQualScore : 2 2 77 33 2 2 2 3333333 444 4 333333333333333333333333333 44 888 000 55 44 3 3 3 3 3 7777 66 3 3333 3 3 44 44 3 44 3 3 3 3 3 44 77 3 3 6 888888 3 3 3 3 77 44 3 6666 3 44 6 3 3 3 3 777 3 3 3 6 3 44 22 44 3 33 44 66 6 555 3 44 6 3 33 3 3 7777 3 55 6666666 3 7 3 1 44 3 666666 6 3 6 3 77 666666666 555 3 3 888 44 3 44 2 555 3 44 888 2 555 3 3 0 555 3 3 3 44 3 88 55 4 8888 0 66 2 4 1 66 888 5555 4 3333 5 5 5 0000 5 66 33333333333 5 5 11 0 5 000 888 5 66 66 5 1 3 7 0 7777777777 66 77777777777 44 5 55 99 2222 6 1 77777777 5 5 5 22222 5 66 888 88 77 0 555 5 77 99 0000 6 7 333 0 33333333333333333333333 3 3 7 3 3 444444444 88 5555555555 333 8888 7 77777777777777777 7 333 7 33333 88 0 6 3
lowQualScore : . . .. .. . . . ....... ... . ........................... .. ... ... .. .. . . . . . .... .. . .... . . .. .. . .. . . . . . .. .. . . . ...... . . . . .. .. . .... . .. . . . . . ... . . . . . .. .. .. . .. .. .. . ... . .. . . .. . . .... . .. ....... . . . . .. . ...... . . . . .. ......... ... . . ... .. . .. . ... . .. ... . ... . . . ... . . . .. . .. .. . .... . .. . . . .. ... .... . .... . . . .... . .. ........... . . .. . . ... ... . .. .. . . . . . .......... .. ........... .. . .. .. .... . . ........ . . . ..... . .. ... .. .. . ... . .. .. .... . . ... . ....................... . . . . . ......... .. .......... ... .... . ................. . ... . ..... .. . . .
lowQualScore : 5 5 00 77 2 7 7 0000000 777 1 999999999999999999999999999 66 000 000 00 88 6 6 6 6 6 6666 88 3 1111 3 3 66 66 3 66 3 6 6 6 6 66 11 3 3 2 888888 1 1 1 1 33 22 1 5555 1 22 2 1 1 1 1 777 1 1 1 2 1 66 00 66 3 88 66 88 7 888 3 66 7 3 88 3 3 1111 3 00 7777777 6 3 6 2 66 3 888888 7 3 7 3 99 777777777 888 3 3 555 22 1 22 1 444 1 22 555 7 444 1 1 2 444 1 1 1 22 3 66 00 0 5555 4 11 8 9 9 11 999 6666 4 2222 0 0 0 6666 0 99 88888888888 0 0 99 0 0 666 888 0 99 99 0 7 5 3 7 3333333333 66 66666666666 55 0 88 22 8888 7 0 00000000 7 0 0 00000 0 99 888 00 99 4 777 7 99 22 7777 7 3 333 7 00000000000000000000000 3 3 3 3 3 777777777 33 3333333333 333 3333 3 00000000000000000 3 333 3 33333 33 7 7 3
consensus : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCA--AAGC-CCG-CGGAG-----C-CAA---ATTCAAA-----------AAA----A-----AA-CATC--GTTCTTAGCA-N-GTA---GG--AATAATC-TT-ATTTTTC-A-T-A-TAC---TTTCGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CT------A-AA-AC-AAT-CG--C--CA-T----T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAA-ATTT--CA-TTTC-AAA--AACCCGAA-TTTA-T---AAGTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TC-AAATG-ATA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATT--TTGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGCTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
Reference ( family-3477 ) : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGAGGGATCCA--AAGC-CCG-CGGAG-----C-CAA---ATTCAAA-----------AAA----A-----AA-CATC--GTTCTTAGCA-N-GTA---GG--AATAATC-TT-ATTTTTC-A-T-A-TAC---TTTCGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CT------A-AA-AC-AAT-CG--C--CA-T----T-AAAA--TTGATG-AAAG-ATT-AAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAA-NTTT--CA-TTTC-AAA--AACCCGAA-TTTA-T---AAGTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-TACCT-TGAGTCCTTTTTT--GCC-A--TC-AAATG-ATA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TNA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATT--TTGGATCCAGTAAACCACGG--AGCAA-G-TTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGACAAATGCGGTTT-TT----GTTTTTT-AACA------GTTTTCGTTTGTTTGCTTATTCTATCTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TT-CCAGA-GAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-AT-GGGG-ACGTAGGGGTGATATTTTG---TTCGCAATT----GA-GTTGTCATCC---A-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GTCATT-----CAGAGCAATGG--CTAATT--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC--ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATACGGTTCCTGCA-ATA
gi|1 : ACCGGGTATCCGGAT-CCAACGT-CC-CGCGGGGGGATCCA--ATGA-CCA-CGGAG-----C-AAA---ATTAAAA-----------AAA----ACAAAAAA-CATC--GTTGCTAGCA-G-ATA---GG--AATAATC-TT-ATTTTTC-A-T-A-TAC---TTTTTCCA-A-T--TTT-TCCTGAT-G--AC--AAATT-CA--TT-TGAT-G-AAC-TTT-GCA--ATG-ATTA-A-GCTTTAAT-TA------A-AA-AA-AAT-CG--C--TA-T----T-AAAA--TTGATG-AACA-ATT-AAC-A-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ATAA-TGTT--CA-TTTC-AAA--AACCCGGA-TTTA-T---TAGTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-TACCT-CGAGTCCTTTTTT--GCC-A--CC-AAATA-ATA-TATTG-A-TATA--TCA---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTT-CCAACTG---T-CGCTTCAAAA-TTTGC-G--AAG-TTT--ATTGA--GAGGG-T----AGAACAATT--TTGGATCC-GTAAACCAAGG--AGCAA-G-TTTTC----AAATC-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTAG--TTTTAT-ATTTAAGAAATCAGCTGACAAATCCGGCTTGTT----GTTTTTT-----------GTTTTTGTTTGTTTGTTTATT-TATTTTTTTTTTTA--CAGTTTT--CA-TA-G-TGATC---TGTT-ACAGA-GAATAA-TA-AATAAAAT--C--T-TAC--ATTCTAT---TT-GGGA--AAAATCGC---GA-TT--TGTGTC--AAATATCAT-GGGG-ACATAGGGGTGATATTTGG---TTTGCAATT----GATATTTTC--CC---ATTTTGTTT-ACT-GTATTGTAATG-GCTGGTGGACATG-GT-ATT-----CAGAGCAATGG--CTAATA--------ATGCCT---TCAA----GATTCAATAGTTCCAAATTAC-------AA------TAACATCGA---TATTATCCTACCATCGTGTAA-----TATC--ATATGGTTCCTGCA-ATA
gi|10 : GGGTATCCGGAT-CCAACGT-CC-AACGGAGGGATCCA--AAGC-CCG-CGGAG-----C-CAA----TTCAAA-----------AAA-------------CATC--GTTCTTAGCA-T-GTA---GG--A-TAATC-TT-ATTTT-C-A-T-AATAC---TTCCGACA-C-A--TTT-TCCTGAT-AGAAC--AAATT-TAATTT-TGAT-G-AAC-TTTTGCA--ATG-TTTA-A-GCTTTAAT-CT------A-AA-CC-AAT-CG--T--CA-T----T-AAAA--TTGATG-AAAA-TTT-AAC-G-AGC-AGT-A-GC-AAACAA-TGAA-CTG--ACAA-ATTTCCCA-TTTCAAAA--AACCCGA---TTATT---AAGTTCA-AAA--CAAC-AAC-AGC-A-T----AGAAA--GTG-----G-CT-GC-TAACT-TGAGTCC-TTTTT--GCCAA--TC--AATG-ATA-GATTG-G-TATAC-TCC---------CACAT-AATATTAAA--TT-TG--TGG---A-AAG--GT---GAGAG---AGAGA-G--------CG---T-CACTTC--AA-TTTGC-G--
gi|11 : ---A--TT-TG--TTA---A-AAG---T---C--AA---CGAAA-GTC-CCACC-G---T-CGCTTC-AAA-TTTGC-G--AAG-TTCAAATTGA--AGGGGCT----AAAAAA--T--TTGGATCC-GTAAACCACGG--GACAA-G-TTTTTCA--AAATG-AT----CAT-A-A-A----ACA-CGGAG--CA-----------AT--A-T--CCTGAA-TAA---CACG---GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGTCAAGTGTGG----------GTTTTTTAAACA------GTTTTCAATTGT
gi|11 : TTTTTTAAACAGTTTT--CAATT-G-TGATC---T-TA-CCAGAAGAATTA-TA-AATAAAAT--C--T-TAC--ATTCTGT---TT-AGGA--AAAATTGCG--GA-TT--TGTATG--AAATAT-ATAGGGG-ACgatcttaccagaagaattataaataaaatcttacattctgtttaggaaaaattgcggatttgtatgaaatatataggggactgttctaatcgtgaaatactctcagcataaca
gi|12 : atttgttaaaagtcaacgaaagtcccaccgtcgcttcaaatttgcgaagttcaaattgaaggggctaaaaaatttggatccgtaaaccacgggacaagtttttcaaaatgatcataaaacacggagcaatatcctgaataacacggagcaacttagttttatatctaggaaatcagctgtcaagtgtgggA-TACAATAAAGT--CGATATACCCATTTTAA---TT-TGGACTAAAATGGCACAGA-TT--TGTGTGTCAAATATCAG-GGAGCATATAGGGGTGA-ATTTTGATATTCGCAATTTGGAGA-GGAG-CATT-------TTGTTTTACTTGTAT-GTAATGTGCTGGTGGACATGCGTCATTAACCCTAGAGGCCTGGAATTAATTGCCTCTCCATGCTTACACCAAATACGATTCAATAATACT--ATTACCAACAATAAATGAGGTAAT-TTGATCCTATTGTTCCATAATTG-GTAAAAAGTCATCTGATATGGTT-CTGCACATAtgttctaatcgtgaaatactctcagcataaca
gi|13 : gttgaaacatagtaaAGTCCTTTTT---GCC-A--TC-AAATG-ATA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT--G--TGA---A-ATG--GT---CGAA----CCAAA-GTC-CCACCCG---T-CACTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATT--TTGGATCCAGAAAACC---G--AGCAA-------------------------AG-A-A-A----CCA-CGGAG--CACTCATTCACTTATG-A-T--CCCA-A--AATC-CACG---GA-GC-TT--TTAGTCTTTTCT-ATC
gi|14 : tt--ATG-ATTA-A-GCTTTGAT-CT------A-AA-AC-AAT-CG--C--CA-T----T--AAA--TTGATG--AAG-ATT-AAC-G-A-C--GT-A-GC--AATA---GAA-CTG--ATTT-TTTT--CA-TTT--AAA--AACCCGAA-TTTA-T---AAGTT-A-AAG--C--C-AAT-A-C-A-T----GG-AA--GTG-----A----GCGTATC---GAGT-CTTATTT--GTC-A--T---AATGAATG-GATTG---TATA--TCTAATTTGACAC---T-AAT-T---ATTTT-TG--TTA---C-AAG--ATG--CG-AA---CC-AA-GT---CATGTG--------TTCAAAA-TTTGC-G--AAG-TTCT-ATTGA--AGGGG-T----AGAAAAaacattcaccgtacactaatgattctggatgacttgtatgtttattcaaaacatatgggatatccaat
gi|15 : CGGGTATTCG-ATGCCAAGGTACC-CG---AGGGATCCA--AAGCGCCGGCGGAG-----A-CAA---ATTCCAA-----------AAC----A-----A--CATC--GTTCTTAGCA-T-GTA---GG--AATAACT-CT-ATATTTT-ATT-A-TAC---CTTATACA-C-A--TTT-TCCT-ATGG--AC---AGTT-TA--TT-TGAT-A-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CT------A-AA-AC---TCCG--C--CA-T----T-AAAA--TTGATG-AAAGAATT-AACGG-A-CTAGT-A-GCAAAACAATTGAA-CT
gi|16 : ACCGGGTATCCGAAT-CCAACGT-CC--ACGGAGGGATCCA--AAGC-CCG-CGGAG-----C-CAA---ATTTAAA-----------AAA----A-----AA-CATC--GTTTTTAGCA-T-GTA---GG--AATAATC-TT-ATTTTTC-A-T-A-TAC---TTCTGACA-C-A--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TG
gi|16 : TT--TTGGATCC-GTAAACCACGG--AGTGA-----TCC----AAATA-Agatcactccgtggtttacggatccaaaa
gi|17 : accgggtatccgaatccaacgtccacggagggatccaaagcccgcggagccaaatttaaaaaaaaacatcgtttttagcatgtaggaataatcttatttttcatatacttctgacacattttcctgatgacaaatCTTTAAT-CT------A-AA-AT-AAT-CG--C--CA-T----T-AAAA--TTTGTG-AAAG-AAT-AAC-G-A-A-AGT-A-GC-AAACAA-TGAA-CTG--ACAA-ATTT--CA-TTTC-AAA--AACCCGAA-TTTT-A---AAGTTCA-AAA--C-AC-AAT-AGC-A-T----AG-A
gi|18 : TCAGAGT-CCAACGT-CC--GCGGAGGGATCCA--ATGA-CCG-CGGAG-------CAA---A---AAACC---------AAG----G-----AA-CATCGTGTTTTTAGCA-g
gi|19 : GGCATCCGGAT-CCAACGT-CCACG-GGAGGGATCC---AAGC-CCG-CGGAG-----C-CAA---ATTCAAgt
gi|2 : ccCCAGTTATCCGGAT-CCAACGT-CC--GCAGAGAGATCCA--ATGA-CCG-CGGAG-----C-AAA---ATTTAAA-----------AAA----A-----AAACATC--GTTTATAGCA-G-GTA---GG--AATAATC-TT-ATTTTTC-A-T-A-TAC---TTTTTACA-C-T--TTT-TCCTGAT-A--AC--AAATT-TA--TT-TGAT-G-AAA-TTT-GCA--ATG-ATTA-A-GCTTTGAT-TT------A-AA-GC-AAT-CG--C--TA-T----T-AAAA--ATCATT-AAA---TC-AAC-G-A-C-AGT-A-GC-AAAAAA-TG---------------TT--CA-TTTC-AAA--AACCCGAA-TTTA-T---AAGTTCA-AAA--C-AC-AAT-AGC-A-T----AG-AA--GTG-----A-CT-GC-TACTT-TGAGTCCTTTTTT--GCT-A--TC-AAATG-ATA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TT--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACCCG---T-CGCTTCAAAA-TTTGC-G--AAG-TTC--ATTGA--GAGGG-T----AGAAAAATT--TTGGATCC-GTAAACTACGA--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----ACA-CGGAG--CA-----------ATG-A-T--CCTG-A-TAA---CGCG---GA-GCAAC--TTTG--TTTTAT-ATTTAAGAAACCAGCT
gi|2 : TTTTTA--CAGTTTT--CA-TA-G-TGATC---T-TTTCCAGA-GAATTA-TA-AATAAAAC--C--T-TAC--ATTCTGT---TT-GGGA--AAAATCGC---GA-TT--TGTGTG--AAATAT-ATAGGGG-ACGTAGGGGTGATATTTTG---TTTGCAATT--------TTGTCATCCAGGA-CTTGTTT-ACT-GTATTGTAATG-GCTGGTGGGCATG-GTT-TT-----CAGAGCAATGG--CTAA-T--------ATGCCT---TCAA----GATTCAATAGTTCCAAATT----ACAATAA------TAACATCGA---TATTATCCTACCATCGTGTCA-----TATC--ATACGGTTCCTGAA-ATAttttacagttttcatagtgatcttttccagagaattataaataaaaccttacattctgtttgggaaaaatcgcgatttgtgtgaaatatataggggacgtaggggtgatattttgtttgcaattttgtcatccaggacttgtttactgtattgtaatggctggtgggcatggttttcagagcaatggctaatatgccttcaagattcaatagttccaaattacaataataacatcgatattatcctaccatcgtgtcatatcatacggttcctgaaata
gi|21 : ccagttatccggatccaacgtccgcagagagatccaatgaccgcggagcaaaatttaaaaaaaaaacatcgtttatagcaggtaggaataatcttatttttcatatactttttacactttttcctgataacaaatttatttgatgaaatttgcaatgattaagctttgatttaaagcaatcgctattaaaaatcattaaatcaacgacagtagcaaaaaatgttcatttcaaaaacccgaatttataagttcaaaacacaatagcatagaagtgactgctactttgagtccttttttgctatcaaatgatagattgatatatccctaattattttttaaaaggtcgaaaccaaagtcccacccgtcgcttcaaaatttgcgaagttcattgagagggtagaaaaattttggatccgtaaactacgaagcaagtttttcaaatgatccataaaacacggagcaatgatcctgataacgcggagcaactttgttttatatttaagaaaccagcGGTATCCGGAT-CCAACGT-CC--ACGGAGG-ATCCA--AAGC-CCG-CGGAG-----C-CAA---ATTCAA
gi|22 : ACCGGGTATCCGGAT-CCAATGT--C-CACGGAGGGATCCA--ATGA-TCG-CGGAG-----CACAA---
gi|3 : CGGGTATC--GAT-C-AACGT-CCGCACGG-GGGATCCAAGAAGC-C---AGGAG-------CAATATATTTAAGTAAAAATAAACAAA----A-----AA-CATC--GTTGCTA-CA-G-ATACGTGA--ACTTATCTTT-ATTTGTCAA-TAA-TACTAATTTACACA-A-T--TTTATGCTGAT-G--A---AAATT-CA---T-TGAT-G-AAC-TTT-GCATGAAG-TCGACA-GTTTTAAT-TTATGATCA-AA-AA-AAT-CG--CCTCA-TATGAT-AAAT--TTGATG-AGCA-TTT-AA----A---AGT-A-G--AAACAACTGAA-CTG--ATAATGGTT--CATTTTC-AAAACAACCGGAT-TTTA-TGTAGAGTTAC-AAA--C-AC-AA--AGC-ATT----AG-AA--GTG-------CT-GC-TA-CT-CG-GTCCTTTTTTTAGCC-A--CCAAAATGAATA-TATTGTA-TATA--TTCA--------A---T-AAT-T---A--TTATG--TAT---A-AAG--GT---CA-------CACA-GGT-TCA-CTG---T--G-TTCAAAA-TTTGC-G---AG-TTT--ATTGA--GAGGC-T----AGAAACATTTGTTGGACTCAAGAACCCAAGG--AGCTA-G-TTTTC----AAA-A-AT-CATCAT-ACA-A----ACA-CGCAT--CA-----------ATG-ACT--CCTGAA-TAA---CGCG---GAGGCAACTGTTGT--TTTTAT-ATTTA-GAAGTGATC-G--AAATTCGTCTT-AT----GAGCTGT-GGTAGATGATGTTTTGTTTTGTTTGCTTATTCTATCTTCCCTGTTC--CTCTTTTAACA-CA-GCT--TT---T-CT-TCATA-GA--TA-TG-AATATAA---C--T-TA---ATTCTAT---TT-
gi|4 : catctaaatcgcaggcaagtcatcttagaaacaCCGGGTATCCGGAT-CCAACG--AC-CGCGGAGGGATCCA--AAGC-CTG-CGGA------------------------------------------------CATT--GTTCTTAGCAGG-GTA---CG--GATG-----C-A----TC-A-T-A-TAC----TTCAACA-C-TTGTTT-CCCTGAT-G--AC--AAATT-TA--TTGTAGT-GAAAC-TTT-GCA--ATGCTTTA-A-GCTTTAATCCT------A-AAGAC-AAT-CGGCT--CATT----T-GAAA--TTGATG-AAAG-ATT-AAC-GTA-C-AGT-A-G--AAA-GA-TG---------CAA--TTT--C-----C-AAA--ATCCCGAA-TTTT-T---AAGTTCA-AAAATC-ACTAAT---C-A-T----AG-AA----G-----A-CT-GCTTACCTATGAGTTCTTTTTT--GCC-AGGCT-AAATG-ATAGGATTGCA-TATA--TCC---------C---T-AAT-TG--A--GT-TGGTTAA---A-GAG--GTCAGCGAGATATCCAAA-GTC-CCACCCGTCAT-CGCCTTAAAACTTTGC-G--AAGATTC--ATCAAGCGGAGG-TACCAAAAAAAAAA--TTGGATCCAGTTAAACACGG--AGCAA-GTTTTTC----AAATG-ATGC--CAT-G-ACAAGATACA-CGAAGGTCA-----------ATG-A-TG-CCTG-A-TAAT--CGCGGCCGA-GCAAC--TTAG--TTTTATAATCTAGGAAATCAGCTGACAAATGTGGTTT-TT----A---TTT-AACA------GTTTTCATGTGT
gi|4 : TTTTTATTTAA-CAGTTTT--CA-TGTG-TGATCGTGT-TT-CCAGA-GAATTAATA-AATATAGTAAT--T-TGC---TTCTGT---TTGGGGA--AAAATTGC---AACTT--TGTATT--AAATAT-AT-AGGG-gatcgtgtttccagagaattaataaatatagtaatttgcttctgtttggggaaaaattgcaactttgtattaaatatatagggggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : ccgggtatccggatccaacgaccgcggagggatccaaagcctgcggacattgttcttagcagggtacggatgcatcatatacttcaacacttgtttccctgatgacaaatttattgtagtgaaactttgcaatgctttaagctttaatcctaaagacaatcggctcatttgaaattgatgaaagattaacgtacagtagaaagatgcaatttccaaaatcccgaatttttaagttcaaaaatcactaatcatagaagactgcttacctatgagttcttttttgccaggctaaatgataggattgcatatatccctaattgagttggttaaagaggtcagcgagatatccaaagtcccacccgtcatcgccttaaaactttgcgaagattcatcaagcggaggtaccaaaaaaaaaattggatccagttaaacacggagcaagtttttcaaatgatgccatgacaagatacacgaaggtcaatgatgcctgataatcgcggccgagcaacttagttttataatctaggaaatcagctgacaaatgtggACCGGGTATCCGGAT-CCAACGT-CC-CACCTAGGG-TCCA--A--C-CC--CGGAG-----C-CAA---ATTCAAA-----------AAA-------------CATC--GTTCTTAGCA-ATGTA---GG--AATAATC-GT-ATTTT-C-A-T---TAC---TTTTGACAGC-A--TTT-TCC-GA--G--AC--AA-TT-TA--TT-TGATTG-AAC-TTT-GCA--ATG-TT-A-A-GCTTTAATTCT------A-AA-AC-AAT-CG--C--CA-T------AAAT--TTGATG-AAAG-ATTTAAC-G-A-C-AGT-A-GC-AAACAA-TGAA-CTG--ACAA-ATAT--CG-TTTC-AAA--AACCCGAAATTTT-T---AAGTTCA-AAA--C-AC-ATTTAGC-A-T----AG-AA--TTG-------CT-GC-TACCT-TGAGTCCTATTTT--GCC-A--TC-AA-TG-ATA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TGA---A-ATG--GT---CGAAA---CCAAAAGTC-CCACCCG---T-CACTTCAAAA-T--GC-G--AAG-TTC--ATTGA--AGGGG-T----AGAAAAATT--TTGGATCCAG-AAACCACGG--AGCAA-GTTTTTC----AAATG-AT-C--CAT-A-A-A----CAA-CGGAG--CA-----------ATGTA-T--CCTG-A-TAA---CAC----GA-GCAAC--TTAG--TTTTAT-ATCTAGGAAATCAGCTGAC-AATGTGGGTT-TTAACAGTTTTTA-AACA------ATggtcgttctaatcttgtgaaaattactctcagactaaaacactgtatg
gi|5 : TTTTAA--CAGTTTT--TA--A-A-CAATC----------AGA-GAATTA-TG-AATAAAAT-----T-TAC--ATTCTGTATATT-GGGA--AAAATCGC---GA-TTAATATGTcagagaattatgaataaaatttacattctgtatattgggaaaaatcgcgattaatatgttctattgtcatgaaatacttttagcacaacgctgt
gi|6 : accgggtatccggatccaacgtcccacctagggtccaaccccggagccaaattcaaaaaacatcgttcttagcaatgtaggaataatcgtattttcattacttttgacagcattttccgagacaatttatttgattgaactttgcaatgttaagctttaattctaaaacaatcgccataaatttgatgaaagatttaacgacagtagcaaacaatgaactgacaaatatcgtttcaaaaacccgaaatttttaagttcaaaacacatttagcatagaattgctgctaccttgagtcctattttgccatcaatgatagattgatatatccctaattatttgtgaaatggtcgaaaccaaaagtcccacccgtcacttcaaaatgcgaagttcattgaaggggtagaaaaattttggatccagaaaccacggagcaagtttttcaaatgatccataaacaacggagcaatgtatcctgataacacgagcaacttagttttatatctaggaaatcagctgacaatgtgggGGTATC-GGAT-CCAACGT-CC--ACGGAGGGATGCC--AAGC-CCG-CGGAG-----C-CAA---ATC----------------AA----A-----AA-CATC--GTTCTTAGCA-T-GTA---GA--AATAATC-TTGA--TTTC-A-T-A-TAC----TTCGACA-CAA--TTT-TCCTGAT-G--AC--AAATTATA--TT-TGAT-G-AAC-TTT--CA--ATG-TTTA-ATGCTTTAAT-TA------A-AA-AC-AAT-CGC-C--CA-T----T-AAGATCTTGATGAAAAG-ATT-AAC-G-A-C-AGTGA-GC-CAACAA--GAT-GCG--ACAA--TTC--CA-TTC---AA--AACCCGAT-ATTA-T---TAATTCA-AAA--C-AC-AAT-AGC-A-T----AG-AGATGTG-----G--T-GC-TACCT-TTAGTCCTTTTTT--G-C-A--C---AATG-ATA--ATTG-A-TAAT--TCC---------C---T---------------------------------------GAA---CCAAA-GTC-CCACCCG---T---CTTCAAAA-TTT-C-G--AAG-TTC--ATTGA--AGGGG-T----AGACAATCT--TTGGATCCAGATAACC-CGGAAAGCAATG-ATTTCTCGAAAATGCAT-T--CCTAA-A-A----ACACCGGAG--CA-----------ATG-A-TACCCTG-ATTAACTGCGTG---AA-GCAAC--TTAG--TTTTAT-ATCT-GGAAATCAGCTGAC-AATGTGGTGT-TT----tctattgtcatgaaatacttttagcacaacgctgt
gi|6 : -TT-CCAAA-GAATT--TA-AATAAAAT--C--T-TAC--A-TCTGT---TT--GGA--AAAATTCC---GA--T--TATATG--AAATA------GGG-ACGTaaaacaattccaaagaatttaaataaaatcttacatctgtttggaaaaattccgattatatgaaatagggacgtttaatcaatgcaatacttttagcgaaacgctgac
gi|7 : ggtatcggatccaacgtccacggagggatgccaagcccgcggagccaaatcaaaaacatcgttcttagcatgtagaaataatcttgatttcatatacttcgacacaattttcctgatgacaaattatatttgatgaactttcaatgtttaatgctttaattaaaaacaatcgcccattaagatcttgatgaaaagattaacgacagtgagccaacaagatgcgacaattccattcaaaacccgatattattaattcaaaacacaatagcatagagatgtggtgctacctttagtccttttttgcacaatgataattgataattccctgaaccaaagtcccacccgtcttcaaaatttcgaagttcattgaaggggtagacaatctttggatccagataacccggaaagcaatgatttctcgaaaatgcattcctaaaaacaccggagcaatgataccctgattaactgcgtgaagcaacttagttttatatctggaaatcagctgacaatgtggtgtttaaaacaaACCGGGTATCCGGAT-CCAACGT-Cttaatcaatgcaatacttttagcgaaacgctgac
gi|7 : cCGACA-C-T--TTT-TCCTGAT-G--AC--AAATT-TA--TT-TGAT-G-AAC-TTT-GCA--ATG-TTTA-A-GCTTTAAT-CT------A-AA-AC-AAT-CA--C--CA-T----T-AAAA--TTGATG-AAAG-ATT-GAC-G-A-C-AGT-A-GC-TAACAA-TAAA-CTG--ACAA-ATTT--CA-TTTC-AAA--AACCCAAA-TTAT-T---AAGTTCA-AAA--C-AC-ACT-AGC-A-T----AG-AA--ATG-----A-CT-GC-TACCT-TGAGTCCTGTTTT--GCC-A--TC-AAATG-ATA-GATTG-A-TATA--TCC---------C---T-AAT-T---A--TT-TG--TTA---A-AAG--GT---CGAAA---CCAAA-GTC-CCACTCG---T-CACTTCAAAA-TATGCGG--AAG-TTC--ATTGA--AGGGG-T----ATAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgacactttttcctgatgacaaatttatttgatgaactttgcaatgtttaagctttaatctaaaacaatcaccattaaaattgatgaaagattgacgacagtagctaacaataaactgacaaatttcatttcaaaaacccaaattattaagttcaaaacacactagcatagaaatgactgctaccttgagtcctgttttgccatcaaatgatagattgatatatccctaattatttgttaaaaggtcgaaaccaaagtcccactcgtcacttcaaaatatgcggaagttcattgaaggggtataa
gi|8 : caccgggtatccggatccaacgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGAT-CCAACGT-CC--ACGGAGGGATCCA--AAGC-CCA-CGGAAGC---C-CAA---ATTC--A-----------AAA----A-----AA-CATC--GTTCTTAGCA-T-GTAC--GG--GATAATC--T-ATTTTTC-A-T-A-TAC---TTT-GACA-CAT--TTT-TCCTGA--G--ACCAAAATT-TA--TT-TGAT-G--AC-TTT-GCA--ATG--TTA-A-GC-TTAAT-CT------A-AA-ACAAAT-CG--C--CA-T----TAAAAA--TTGATG-AAAG-ATT-AAC-G---C-AGT-ATGC-AAACAA-TGAAGCTGTAACAA-ATTC--CA-TTTC-AAA--AACCCGA---TTATT---AAG-TCATAAA--CAAC-AAT-AGCAA-T----AG-AA--GTG-----GCCT-GC-TACCT-TGAGTC---TTTT--GCC-A--TC-AAATG-ATG-ACTTG-ATTATAACTCC---------C---TAAAT-T---T--TT-TG--TGA---G-AAACTGT---CGAAA---CCAGA-GTC-CAACCCG---TCCACTTCAAAA-TTTGC-GGCAAG-T
gi|9 : tatctcGGTATCCG-AT-CGACCGT-CT-CG--GAGG-ATC-A--TGAC-CTG-CGGAGAAAAAC-CAA---A---AAA-----------AAAGCAAA-----AA-CAT---GTTTTTAGCA-G-GCA---AGGAAATAATC-TT-ATTTTTC-A-T-A-TAC---TTTTTACA-C-T--TTT-CCCTGAT-G------AAATT-TA--TT---GT-G-AACATGT-GAG--ATT-ATTA-A--CTTTAGT-CT------AGAA-AC-AAT-CG--C--AT-T----T-AAAA--TTGATGAAAAG-ATT-AAC-G-A---AGT-A-AG-AA-------AA-CTG--AT---TTTT--CA--TTA-AAA--AACC--AA-TTTA-T---AAGTTC--AAA--C-AC-AA--AAC-A-CGAGGAG-AG--ATGTATATA-CTAGC-TGTTT-TGA-TCC-TTTTT--GTC-A--TC--AATG-ATG-GATTG-A-TATA--GTC---------C---T-AAT-T---A---T-TG--TTATTTACAAG--AT---TGAAA---CC-AA-GTCTCCATCCG---T-CGC-TCAAAA-ATTGC-G--AAG-TGC--ATTGA--AGGGc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GCTTCTGATGTGACTTGTGTATTCCTCATCCACATTCCACTAAAACAGTACTACC
Unaligned ( gi|23 ): TTCATATACTTCTCAGCAATTTTATTAGAAAATCTA