lowQualScore : 4 1 1 11 11 8888888888888888888888888888888 2 3 1 1 1 4444 11 5555555555555555555555 1111 66666666666666666666666666 222222222 555555555 1 44 111 111 1111 2222222222 22222 111 777777777777 1 11 11111111 2222222 11 111 1
lowQualScore : 0 5 6 0 0 11 5 11 1 0 1 8 2222222222222222222222222222222 5 8 5 5 99 6 6 2 3 3 7 6 2222 3 666 11 3333333333333333333333 6 5 1 77 7777 11111111111111111111111111 000000000 5 0 5 3 999999999 4 4 5 3 0 11 1 111 111 1 2222 5555555555 5555 77 00000 000 5 1 0 66 0 0 666666666666 0 4 5 44 5 5 55555555 5 7777777 0 5 5 4 4 1 22 66 3 6 777 4 0
lowQualScore : . . . . . .. . .. . . . . ............................... . . . . .. . . . . . . . .... . ... .. ...................... . . . .. .... .......................... ......... . . . . ......... . . . . . .. . ... ... . .... .......... .... .. ..... ... . . . .. . . ............ . . . .. . . ........ . ....... . . . . . . .. .. . . ... . .
lowQualScore : 0 0 7 0 2 00 0 00 4 8 4 0 0000000000000000000000000000000 0 0 0 0 22 7 0 5 7 3 5 7 0000 2 222 00 0000000000000000000000 0 7 3 99 9999 66666666666666666666666666 444444444 0 1 0 0 999999999 0 9 4 2 0 22 0 777 777 0 1111 0000000000 9999 99 00000 000 7 4 1 11 2 2 555555555555 4 1 7 33 7 7 77777777 7 6666666 7 7 7 0 4 1 22 11 2 7 222 0 0
consensus : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAAT-T------TA--ATTAAC-TTT-----------CAAAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-TAAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCTCATGTCCTCTCGTCGCTAG--TTCATG--TGT-AAA-A-TGCC----C-AGCGTTTCG-TCCAATTTT--AT----CGTG-C-AA--------A---CTCT-GATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTNAATATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT--ACTGCTCCATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTNAAGA-TTGGATT
Reference ( gi|1 ) : CGGTACAAATAATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAAT-T------TA--AC--AC-TTT-----------CAAAACTA-TATTTTGTGTATAGTTATA--A-TCCTGTCAAAGAATAAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCTTGTGTCCTCTCGTCGCTCG--TTCATGAATGT-AAA-A-TGCC----C-AGCGCTTCG-TCCAATTTT--AT----CGTG-C-AA--------A---CTGT-AATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAATATATAAGATCTTCGATGCGCTCTTGTAAAAATA-CAA--CAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCTACACTGCTCCATTTGTTTACA-CTAGATGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGTCACT-CCAATTT-AAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
gi|5 : CGGTA-AAATCATGT-ATGTTATATAAA-AAAGGACGAATAAAGGATAAGCAGACGTTACCAAAATAAT-TGTAAATTA--AC--A--TTT-----------CAAAG-TA-TATTTT-TG-ATAGGTATAGTA-TCCTGTCAAAGA-TAAACACATTGTACACTGTGTTCATGTAGTGTTTGACTT---GTTGTCTAGTCG-TCG--TTCATG--TAG-AAA-C-TGCC-------GCGTTTCG-TCCAATTTT--AT----CGTGTC-AA--------A---CTTTTGATAAGTTGTCGC-CTCA-CT------GCTTATAATATATCCTCAGATG-ATA-GAT-TTCGATGCGCTCCTTT-AAAATAGCAA--CAAACAATAA--GC---TA---AC-GTCTA----CT----------CCCGTC-C--C-----GG---AG-G-TTG---------------ACTG----ATTTGTTTACA-C-AGTGGCA-ACA----C---A-CA---TTATACATGA-GTCATG-AAATGG-CGTCACTGCCAATTC-AAATTTCAGACGAGACTCTCGA-CAGGGATAAGGTAT-AGAAC--AG--AAACACGATAAAT
gi|2 : AAATCATGTCATGTTATATAAA-AAGAAA--AATAAAGGATA--CAGACTT-ACCAAATTAATAT------TACTAC--AC-TT------------CAAAG-TA-TATTTTGT--ATAGGTATA--AATCCTGTCAA-GAATAAACACATCGTTCACTGTGTTCATGTCGT-TTTGACC----GTTCTC-CGTCGCTAG--TTCATG----T-AAACA-TGCC----CCAGCGTTTTGCTCCAATTTTTAATT---CGTGAC-AA--------C---CTCT-AATAAGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAATA----AGATATT-GATGAGTCGTTGTAAAA-TA-CAAAACAAACAACAAGGACGATTA---ACTGTCTC----CT----------CCCGAT-CTCC-----GG---AG---TTGAATGAATCTTGCT-----GCTTCATT-GTTTACA-CTAGATGCA-G-AATTAC---AACA---TCATACAT------ATGCAAAGGCCCGTC-CT-CCAATTT-AAATTTCAGACGAAACCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACAATAAATGTTTTAAATTAATGA-TTGGATT
gi|9 : taAAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAATATAAT-T------TA--ATTAACATTT-----------CAAAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGATCAAACACATCGTTCACTGTGTTCAT-TAGT-TTTGAacga
gi|3 : ATACAAATCATGAT--AATAAAG-ATA--CTGACTTTACCAAAATAAT-T------TC--ATTAAC-TGCA----------CAAAAGTA-CATTTTGTG-ATACGTATA--A-TTCTTTCAAAGAATAAGCACATCCTTCATTGTGTTCAT-TAGT-TTTGACC-TATGTCCTTTCGTCGCAAG--TCCATG--T-C-AAA-A-GGCCCGGGC-AGCGTTTCG-TCCAATTTA--AT----CGTG-T-GA--------AGCTCTTC-GAT--GTTGTCACTCT-AACA------A-TT-AAACAT-TCCTTGAATATA-------TTTGCTGTGCTCTTGTTAA
gi|4 : --AATAAAGCACA--CTGACTTTAC--AATTAAT-T------TA---T--AT-TTTTTTAACATGCACAAAAGTAAGATTTTGTG-ATACGTATA--A-TTCTTTCTAAGA-TAAGCAC-TCCTTCA-TGTGTTCAT-T-TT-TTTGACCTCATGTCCTTTCGT---TCGAAGTCAC--ATGTTCAA-A-GGCCGG--C-AGCGTTTCG-TCCAATTGT--ATAATCTGTG-T-AAGCTCTTCGA---CTGT-------TTGTCACTCTAGACA------A-TTAA--CAT-TC--TGAATATAT-------TTG-CGTGCTCTTGTAAcccttattgtatcttttttactgttgaggtctaattgtttcttttcccacttcccccagccggaagtttgaaataatttggctgacctaattgtttacattagttgcagacacaacatgacgtcaatcaaagggcagctacttcaattttggattacgaacgaggtcctagacagggataaggtaacaccgtaaaaacaccatttgttttttaagattagatt
gi|14 : atacaaatcatgactAGGTGTA--A-TCCTGTTGAAGATTAAACACATATTTCATTTTGTTTAT-TTGT-TTcccttattgtatctttttttacttttgaggtctaatgtttcttccccccccacccagccgagagtttgaaagaatttcgtgactaatgtttacatctagttcacgaaacaacatggcgtcaatcatagggcagctacttcaatttggattaccgaagaggtcctagatcggataaggtaaaacgttaaaaacaccatttgttttttaagatttagatt
gi|6 : GTCGCTAG--TTCATG--TGT-AAA-ACTGCC----CCAGCGTTTCG-TCC-----------------------------------C--------AGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAATATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TATTAACTGTCTC----CT----------TCCAAT-C--CC----GG---AG-GTTTGAATGAATATTGCT-----GCTCCATT-GTTTACA-CTAGATGCA-G-A----C---A-CAACATCATACATGACGCCATGCAAAGGGCCGTCACT-CCAGTTC-AAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAA
gi|8 : ATGT-AAC-ACTGCCT---C-AGCGTTTCG-TCCAATTTT--AT----CGTGTC-AA--------A---CCCT-AATAAGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTTAATATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CTCGATCC--C-----AG---AG-GTTTGGATGAATCTCG-----CTGCTCCATT
gi|7 : ttc-TCAAATTGT--AT----CACG-CCAA--------A---CTCT-TCAAAGTTGTCGCTCTCACCTCTCATAG-TTAAA-TAT-TCCTTCAACAT-----ATCTTTGCTGCGCTCTTGTTAAg
gi|16 : AGTTGTCGCTCTC-ACT------G-TTAAAATAG-TCCtctttattgggtttgtttttactgttggggtctagtcatttcttttccctttcccccttggaggtttgaatctcgctaattcttacattattagtagacacaacataacgccatgcaaagggccgctactccaatttatattacagacgagccctcgacagggataaagtaat
gi|3 : TGAGGTC---TA---ATTGTTTC----TTTTCCCACTTCCCCCAG-C--C-----GG---AA-GTTTGAAATAATTTGGCTG-AC----CTAATTGTTTACA-TTAGTTGCA-G-A----C---A-CA-------ACATGACGTCAATCAAAGGGCAGCTACT-TCAATTTTGGATTACGAACGAGGTCCTAGA-CAGGGATAAGG--TAACACCGTAA--AAACACCAT--TTG-TTT---TTTAAGA-TTAGATT
gi|4 : atacaaatcatgataataaagatactgactttaccaaaataatttcattaactgcacaaaagtacattttgtgatacgtataattctttcaaagaataagcacatccttcattgtgttcattagttttgacctatgtcctttcgtcgcaagtccatgtcaaaaggcccgggcagcgtttcgtccaatttaatcgtgtgaagctcttcgatgttgtcactctaacaattaaacattccttgaatatatttgctgtgctcttgttaacccttattgtatcttttttactgtTGAGGTC---TA---A-TGTTTCTTCCCC----------CCCCAC-C--C-----AGCCGAGAGTTTGAAAGAATTTCG-TG-ACTA----A--TGTTTACATCTAG-TTCACG-A----A---A-CA-------ACATGGCGTCAATCATAGGGCAGCTACT-TCAATTT-GGATTACCGAAGAGGTCCTAGATC--GGATAAGGTAAAACGTT--AA--AAACACCAT--TTG-TTT---TTTAAGATTTAGATT
gi|7 : atacaaatcatgactaataaagcacactgactttacaattaatttatatttttttaacatgcacaaaagtaagattttgtgatacgtataattctttctaagataagcactccttcatgtgttcatttttttgacctcatgtcctttcgttcgaagtcacatgttcaaaggccggcagcgtttcgtccaattgtataatctgtgtaagctcttcgactgtttgtcactctagacaattaacattctgaatatatttgcgtgctcttgtaacccttattgtatctttttttactttTCTT----TT----------CCCTTT-C--CCCCTTGG---AG-GTTTGAAT----CTCGCTA---------ATTC--TTACA-TTATTAGTA-G-A----C---A-CA-------ACATAACGCCATGCAAAGGGCCGCTACT-CCAATTT-ATATTACAGACGA-GCCCTCGA-CAGGGATAAAGTA
gi|11 : tcaaattgtatcacgccaaactcttcaaagttgtcgctctcacctctcatagttaaatattccttcaacatatctttgctgcgctcttgttaatctttattgggtttgtttttactgttggggtctagtcattATCTCGCT-----GCTCCATT-GTTTACA-CTAGA--CA-G-A----CACAA-CA---TCATACATGACGTAATGCAAAGGat
gi|10 : CT-CCAATTT-AAATTACAGACGAGGCCCTCGA-CAGGGATAGGGTATAAGAAC--AG--AAACACGATAAATG-
gi|12 : TTTTAGACAAGGGTCTCGA-CAGTGATAAGGT-TAA-AACGTAG--AGACACGATga
gi|15 : GACGAGGCCCTCGA-CAGGGATAAGGTATACGAA---AG--AAACACGATAAAtta
gi|13 : GTATAAGAAC--AGTAAAACACGATAAATG-TTTGAATTAAATA-TTGGATTga
Alignments
lowQualScore : 1 2222222222 1 111 1 222 22 333333 1111 222 111 11 111111 1111 111 111 1111 2222222222 11111 33333333333 1 11111111 11111 11
lowQualScore : 0 2 8 99 2 99 6 6 0000000000 3 6 99 6 6 77 5 333 0 1 1 5 5 777 0 6 66 5 77 11 5 444444 5 66 5555 222 0 5 666 3 33 222222 4 7 4 1 5 4444 5 2 3 3 0 8 0 0 000 000 0000 1111111111 1 5 66 77777 888 5 0 33 0 77777777777 1 5 44 5 5 22222222 5 99999 5 5 1 4 11 55 1 5 9 0 1 8
lowQualScore : . . . .. . .. . . .......... . . .. . . .. . ... . . . . . ... . . .. . .. .. . ...... . .. .... ... . . ... . .. ...... . . . . . .... . . . . . . . . ... ... .... .......... . . .. ..... ... . . .. . ........... . . .. . . ........ . ..... . . . . .. .. . . . . . .
lowQualScore : 0 5 0 22 5 22 7 7 2222222222 3 7 22 7 7 99 7 999 7 7 4 1 7 444 8 7 00 7 99 77 7 333333 0 99 6666 111 8 0 000 4 66 888888 4 3 4 0 0 4444 6 2 1 6 8 0 8 8 000 000 6666 9999999999 4 0 99 55555 888 0 1 00 1 44444444444 2 0 44 0 0 55555555 0 55555 0 0 0 0 00 55 9 7 8 6 0 0
consensus : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT-ATGTCCTCTCG-TCGCTAGTT-CATG--TATAAAA-TGCC----C-AGCGTTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TCT--GATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-AC--TGCTCCATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
Reference ( family-345 ) : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCTCATGTCCTCTCG-TCGCTAGTT-CATG--TGTAAAA-TGCC----C-AGCGTTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TCT--GATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTNAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-AC--TGCTCCATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTNAAGA-TTGGATT
gi|1 : CGGTACAAATAATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-C--------AC-TTT-CA--AAACTA-TATTTTGTGTATAGTTATA--A-TCCTGTCAAAGAAT-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCTTGTGTCCTCTCG-TCGCTCGTT-CATGAATGTAAAA-TGCC----C-AGCGCTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TGT--AATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAAT-ATATAAGATCTTCGATGCGCTCTTGTAAAAATA-CAA--CAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-ACACTGCTCCATTTGTTTACA-CTAGATGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGTCACT-CCAATTT-AAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
gi|10 : CT-CCAATTT-AAATTACAGACGAGGCCCTCGA-CAGGGATAGGGTATAAGAAC--AG--AAACACGATAAATG-
gi|11 : ATCTCGCT------GCTCCATT-GTTTACA-CTAGA--CA-G-A----CACAA-CA---TCATACATGACGTAATGCAAAGGga
gi|12 : TTTTAGACAAGGGTCTCGA-CAGTGATAAGGT-TAA-AACGTAG--AGACACGAT
gi|13 : GTATAAGAAC--AGTAAAACACGATAAATG-TTTGAATTAAATA-TTGGATTtta
gi|14 : AGGTGTA--A-TCCTGTTGAAGA-TTAAACACATATTTCATTTTGTTTAT-TTGT-TTacgat
gi|15 : GACGAGGCCCTCGA-CAGGGATAAGGTATACGAA---AG--AAACACGATAAA
gi|16 : AGTTGTCGCTCTC-ACT------G-TTAAAATAG-TCCga
gi|2 : TA-AAATCATGTCATGTTATATAAA-AAGAAA--AATAAAGGATA--CAGACTT-ACCAAATTAATA-TT-A-CT-----ACAC-TTC-----AAAGTA-TATTTTGT--ATAGGTATA--AATCCTGTCAAGAA-T-AAACACATCGTTCACTGTGTTCATGTCGT-TTTGACC----GTTCTC-CG-TCGCTAGTT-CATG--TA-AACA-TGCC----CCAGCGTTTTGCTCCAATTTTTAATT---CGTGAC-AACC-TCT--AATAAGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAAT-A-A---GATATT-GATGAGTCGTTGTAAAA-TA-CAAAACAAACAACAAGGACGATTA---ACTGTCTC----CT----------CCCGAT-CTCC-----GG---AG---TTGAATGAATCTTGCT------GCTTCATT-GTTTACA-CTAGATGCA-G-AATTAC---AACA---TCATACAT------ATGCAAAGGCCCGTC-CT-CCAATTT-AAATTTCAGACGAAACCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACAATAAATGTTTTAAATTAATGA-TTGGATT
gi|3 : ATACAAATCATGAT--AATAAAG-ATA--CTGACTTTACCAAAATAATT-TC-A-TT-----A-AC-TGCACA--AAAGTA-CATTTTGTG-ATACGTATA--A-TTCTTTCAAAGAAT-AAGCACATCCTTCATTGTGTTCAT-TAGT-TTTGACCT-ATGTCCTTTCG-TCGCAAGTC-CATG--T-CAAAA-GGCCCGGGC-AGCGTTTCG-TCCAATTTA--AT----CGTG-TGAAGC-TCTTCGAT--GTTGTCACTCT-AACA------A-TT-AAACAT-TCCTTGAAT-ATA-------TTTGCTGTGCTCTTGTTAAacga
gi|3 : TGAGGTC---TA---ATTGTTTC----TTTTCCCACTTCCCCCAG-C--C-----GG---AA-GTTTGAAATAATTTGGCTGAC------CTAATTGTTTACA-TTAGTTGCA-G-A----C---A-CA-------ACATGACGTCAATCAAAGGGCAGCTACT-TCAATTTTGGATTACGAACGAGGTCCTAGA-CAGGGATAAGG--TAACACCGTAA--AAACACCAT--TTG-TTT---TTTAAGA-TTAGATTcccttattgtatcttttttactgttgaggtctaattgtttcttttcccacttcccccagccggaagtttgaaataatttggctgacctaattgtttacattagttgcagacacaacatgacgtcaatcaaagggcagctacttcaattttggattacgaacgaggtcctagacagggataaggtaacaccgtaaaaacaccatttgttttttaagattagatt
gi|4 : atacaaatcatgataataaagatactgactttaccaaaataatttcattaactgcacaaaagtacattttgtgatacgtataattctttcaaagaataagcacatccttcattgtgttcattagttttgacctatgtcctttcgtcgcaagtccatgtcaaaaggcccgggcagcgtttcgtccaatttaatcgtgtgaagctcttcgatgttgtcactctaacaattaaacattccttgaatatatttgctgtgctcttgttaacccttattgtatcttttttactgt--AATAAAGCACA--CTGACTTTAC--AATTAATT-TATA-TTTTTTTA-AC-ATG-CACAAAAGTAAGATTTTGTG-ATACGTATA--A-TTCTTTCTAAGA-T-AAGCAC-TCCTTCA-TGTGTTCAT-T-TT-TTTGACCTCATGTCCTTTCGTTCGA-AGTCACATG--T-TCAAA-GGCCGG--C-AGCGTTTCG-TCCAATTGT--ATAATCTGTG-T-AAGC-TCTTCGACTGTTTGTCACTCTAGACA------A-TT--AACAT-TC--TGAAT-ATA-------TTTG-CGTGCTCTTGTAA
gi|4 : atacaaatcatgactTGAGGTC---TA---A-TGTTTCTTCCCC----------CCCCAC-C--C-----AGCCGAGAGTTTGAAAGAATTTCGTG-AC--TA----A--TGTTTACATCTAGTT-CACG-A----A---A-CA-------ACATGGCGTCAATCATAGGGCAGCTACT-TCAATTT-GGATTACCGAAGAGGTCCTAGATC--GGATAAGGTAAAACGTT--AA--AAACACCAT--TTG-TTT---TTTAAGATTTAGATTcccttattgtatctttttttacttttgaggtctaatgtttcttccccccccacccagccgagagtttgaaagaatttcgtgactaatgtttacatctagttcacgaaacaacatggcgtcaatcatagggcagctacttcaatttggattaccgaagaggtcctagatcggataaggtaaaacgttaaaaacaccatttgttttttaagatttagatt
gi|5 : atacaaatcatgactaataaagcacactgactttacaattaatttatatttttttaacatgcacaaaagtaagattttgtgatacgtataattctttctaagataagcactccttcatgtgttcatttttttgacctcatgtcctttcgttcgaagtcacatgttcaaaggccggcagcgtttcgtccaattgtataatctgtgtaagctcttcgactgtttgtcactctagacaattaacattctgaatatatttgcgtgctcttgtaacccttattgtatctttttttactttCGGTA-AAATCATGT-ATGTTATATAAA-AAAGGACGAATAAAGGATAAGCAGACGTTACCAAAATAATTGTA-AATT-----A-ACATTT-CA--AA-GTA-TATTTT-TG-ATAGGTATAGTA-TCCTGTCAAAGA-T-AAACACATTGTACACTGTGTTCATGTAGTGTTTGACT---TGTTGTCTAG-TCG-TCGTT-CATG--TAGAAAC-TGCC-------GCGTTTCG-TCCAATTTT--AT----CGTGTC-AAACTTTT--GATAAGTTGTCGC-CTC-ACT------GCTTATAATATATCCTCAGATGATA---GAT-TTCGATGCGCTCCTTT-AAAATAGC--AACAAACAATAA--GC---TA---AC-GTCTA----CT----------CCCGTC-C--C-----GG---AG-G-TTG--------------AC--TG----ATTTGTTTACA-C-AGTGGCA-ACA----C---A-CA---TTATACATGA-GTCATG-AAATGG-CGTCACTGCCAATTC-AAATTTCAGACGAGACTCTCGA-CAGGGATAAGGTAT-AGAAC--AG--AAACACGATAAAT
gi|6 : G-TCGCTAGTT-CATG--TGTAAAACTGCC----CCAGCGTTTCG-TCC---------------------------C-------AGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TATTAACTGTCTC----CT----------TCCAAT-C--CC----GG---AG-GTTTGAATGAATATTGCT------GCTCCATT-GTTTACA-CTAGATGCA-G-A----C---A-CAACATCATACATGACGCCATGCAAAGGGCCGTCACT-CCAGTTC-AAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAA
gi|7 : -TCAAATTGT--AT----CACG-CCAAAC-TCT--TCAAAGTTGTCGCTCTCACCTCTCATAG-TT-AAATAT-TCCTTCAAC-AT-----ATCTTTGCTGCGCTCTTGTTAA
gi|7 : TCTT----TT----------CCCTTT-C--CCCCTTGG---AG-GTTTGAAT----CTCGCT-A---------ATTC--TTACA-TTATTAGTA-G-A----C---A-CA-------ACATAACGCCATGCAAAGGGCCGCTACT-CCAATTT-ATATTACAGACGA-GCCCTCGA-CAGGGATAAAGTAtctttattgggtttgtttttactgttggggtctagtcatttcttttccctttcccccttggaggtttgaatctcgctaattcttacattattagtagacacaacataacgccatgcaaagggccgctactccaatttatattacagacgagccctcgacagggataaagtaat
gi|8 : tcaaattgtatcacgccaaactcttcaaagttgtcgctctcacctctcatagttaaatattccttcaacatatctttgctgcgctcttgttaatctttattgggtttgtttttactgttggggtctagtcattTT-CATG--TA-ACAC-TGCCT---C-AGCGTTTCG-TCCAATTTT--AT----CGTGTC-AAAC-CCT--AATAAGTTGTCGCTCTC-ACT------G-TTAAAATAT-TCCTTTAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CTCGATCC--C-----AG---AG-GTTTGGATGAATCTCG----C--TGCTCCATTat
gi|9 : -AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAATATAATT-TA-A-TT-----A-ACATTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-TCAAACACATCGTTCACTGTGTTCAT-TAGT-TTTGAg
Alignments
lowQualScore : 1 2222222222 1 111 1 333 11 333333 1111 222 111 11 111111 1111 111 111 1111 2222222222 11111 33333333333 1 11111111 11111 11
lowQualScore : 0 2 8 99 2 99 6 6 0000000000 3 6 99 6 6 77 5 333 0 1 1 5 5 000 0 6 66 5 77 99 5 444444 5 66 5555 222 0 5 666 3 33 222222 4 7 4 1 5 4444 5 2 3 3 0 8 0 0 000 000 0000 1111111111 1 5 66 77777 888 5 0 33 0 77777777777 1 5 44 5 5 22222222 5 99999 5 5 1 4 11 55 1 5 9 0 1 8
lowQualScore : . . . .. . .. . . .......... . . .. . . .. . ... . . . . . ... . . .. . .. .. . ...... . .. .... ... . . ... . .. ...... . . . . . .... . . . . . . . . ... ... .... .......... . . .. ..... ... . . .. . ........... . . .. . . ........ . ..... . . . . .. .. . . . . . .
lowQualScore : 0 5 0 22 5 22 7 7 2222222222 3 7 22 7 7 99 7 999 7 7 4 1 7 222 8 7 00 7 99 99 7 333333 0 99 6666 111 8 0 000 4 66 888888 4 3 4 4 0 4444 6 2 1 6 8 0 8 8 000 000 6666 9999999999 4 0 99 55555 888 0 1 00 1 44444444444 2 0 44 0 0 55555555 0 55555 0 0 0 0 00 55 9 7 8 6 4 0
consensus : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT-ATGTCCTCTCG-TCGCTAGTT-CATG--TATAAAA-TGCC----C-AGCGTTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TCT--GATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-AC--TGCTCCATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
Reference ( family-345 ) : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT-ATGTCCTCTCG-TCGCTAGTT-CATG--TATAAAA-TGCC----C-AGCGTTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TCT--GATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-AC--TGCTCCATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
gi|1 : CGGTACAAATAATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-C--------AC-TTT-CA--AAACTA-TATTTTGTGTATAGTTATA--A-TCCTGTCAAAGAAT-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCTTGTGTCCTCTCG-TCGCTCGTT-CATGAATGTAAAA-TGCC----C-AGCGCTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TGT--AATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAAT-ATATAAGATCTTCGATGCGCTCTTGTAAAAATA-CAA--CAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-ACACTGCTCCATTTGTTTACA-CTAGATGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGTCACT-CCAATTT-AAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
gi|10 : CT-CCAATTT-AAATTACAGACGAGGCCCTCGA-CAGGGATAGGGTATAAGAAC--AG--AAACACGATAAATG-
gi|11 : ATCTCGCT------GCTCCATT-GTTTACA-CTAGA--CA-G-A----CACAA-CA---TCATACATGACGTAATGCAAAGGga
gi|12 : TTTTAGACAAGGGTCTCGA-CAGTGATAAGGT-TAA-AACGTAG--AGACACGAT
gi|13 : GTATAAGAAC--AGTAAAACACGATAAATG-TTTGAATTAAATA-TTGGATTtta
gi|14 : AGGTGTA--A-TCCTGTTGAAGA-TTAAACACATATTTCATTTTGTTTAT-TTGT-TTacgat
gi|15 : GACGAGGCCCTCGA-CAGGGATAAGGTATACGAA---AG--AAACACGATAAA
gi|16 : AGTTGTCGCTCTC-ACT------G-TTAAAATAG-TCCga
gi|2 : TA-AAATCATGTCATGTTATATAAA-AAGAAA--AATAAAGGATA--CAGACTT-ACCAAATTAATA-TT-A-CT-----ACAC-TTC-----AAAGTA-TATTTTGT--ATAGGTATA--AATCCTGTCAAGAA-T-AAACACATCGTTCACTGTGTTCATGTCGT-TTTGACC----GTTCTC-CG-TCGCTAGTT-CATG--TA-AACA-TGCC----CCAGCGTTTTGCTCCAATTTTTAATT---CGTGAC-AACC-TCT--AATAAGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAAT-A-A---GATATT-GATGAGTCGTTGTAAAA-TA-CAAAACAAACAACAAGGACGATTA---ACTGTCTC----CT----------CCCGAT-CTCC-----GG---AG---TTGAATGAATCTTGCT------GCTTCATT-GTTTACA-CTAGATGCA-G-AATTAC---AACA---TCATACAT------ATGCAAAGGCCCGTC-CT-CCAATTT-AAATTTCAGACGAAACCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACAATAAATGTTTTAAATTAATGA-TTGGATT
gi|3 : ATACAAATCATGAT--AATAAAG-ATA--CTGACTTTACCAAAATAATT-TC-A-TT-----A-AC-TGCACA--AAAGTA-CATTTTGTG-ATACGTATA--A-TTCTTTCAAAGAAT-AAGCACATCCTTCATTGTGTTCAT-TAGT-TTTGACCT-ATGTCCTTTCG-TCGCAAGTC-CATG--T-CAAAA-GGCCCGGGC-AGCGTTTCG-TCCAATTTA--AT----CGTG-TGAAGC-TCTTCGAT--GTTGTCACTCT-AACA------A-TT-AAACAT-TCCTTGAAT-ATA-------TTTGCTGTGCTCTTGTTAAacga
gi|3 : TGAGGTC---TA---ATTGTTTC----TTTTCCCACTTCCCCCAG-C--C-----GG---AA-GTTTGAAATAATTTGGCTGAC------CTAATTGTTTACA-TTAGTTGCA-G-A----C---A-CA-------ACATGACGTCAATCAAAGGGCAGCTACT-TCAATTTTGGATTACGAACGAGGTCCTAGA-CAGGGATAAGG--TAACACCGTAA--AAACACCAT--TTG-TTT---TTTAAGA-TTAGATTcccttattgtatcttttttactgttgaggtctaattgtttcttttcccacttcccccagccggaagtttgaaataatttggctgacctaattgtttacattagttgcagacacaacatgacgtcaatcaaagggcagctacttcaattttggattacgaacgaggtcctagacagggataaggtaacaccgtaaaaacaccatttgttttttaagattagatt
gi|4 : atacaaatcatgataataaagatactgactttaccaaaataatttcattaactgcacaaaagtacattttgtgatacgtataattctttcaaagaataagcacatccttcattgtgttcattagttttgacctatgtcctttcgtcgcaagtccatgtcaaaaggcccgggcagcgtttcgtccaatttaatcgtgtgaagctcttcgatgttgtcactctaacaattaaacattccttgaatatatttgctgtgctcttgttaacccttattgtatcttttttactgt--AATAAAGCACA--CTGACTTTAC--AATTAATT-TATA-TTTTTTTA-AC-ATG-CACAAAAGTAAGATTTTGTG-ATACGTATA--A-TTCTTTCTAAGA-T-AAGCAC-TCCTTCA-TGTGTTCAT-T-TT-TTTGACCTCATGTCCTTTCGTTCGA-AGTCACATG--T-TCAAA-GGCCGG--C-AGCGTTTCG-TCCAATTGT--ATAATCTGTG-T-AAGC-TCTTCGACTGTTTGTCACTCTAGACA------A-TT--AACAT-TC--TGAAT-ATA-------TTTG-CGTGCTCTTGTAA
gi|4 : atacaaatcatgactTGAGGTC---TA---A-TGTTTCTTCCCC----------CCCCAC-C--C-----AGCCGAGAGTTTGAAAGAATTTCGTG-AC--TA----A--TGTTTACATCTAGTT-CACG-A----A---A-CA-------ACATGGCGTCAATCATAGGGCAGCTACT-TCAATTT-GGATTACCGAAGAGGTCCTAGATC--GGATAAGGTAAAACGTT--AA--AAACACCAT--TTG-TTT---TTTAAGATTTAGATTcccttattgtatctttttttacttttgaggtctaatgtttcttccccccccacccagccgagagtttgaaagaatttcgtgactaatgtttacatctagttcacgaaacaacatggcgtcaatcatagggcagctacttcaatttggattaccgaagaggtcctagatcggataaggtaaaacgttaaaaacaccatttgttttttaagatttagatt
gi|5 : atacaaatcatgactaataaagcacactgactttacaattaatttatatttttttaacatgcacaaaagtaagattttgtgatacgtataattctttctaagataagcactccttcatgtgttcatttttttgacctcatgtcctttcgttcgaagtcacatgttcaaaggccggcagcgtttcgtccaattgtataatctgtgtaagctcttcgactgtttgtcactctagacaattaacattctgaatatatttgcgtgctcttgtaacccttattgtatctttttttactttCGGTA-AAATCATGT-ATGTTATATAAA-AAAGGACGAATAAAGGATAAGCAGACGTTACCAAAATAATTGTA-AATT-----A-ACATTT-CA--AA-GTA-TATTTT-TG-ATAGGTATAGTA-TCCTGTCAAAGA-T-AAACACATTGTACACTGTGTTCATGTAGTGTTTGACT---TGTTGTCTAG-TCG-TCGTT-CATG--TAGAAAC-TGCC-------GCGTTTCG-TCCAATTTT--AT----CGTGTC-AAACTTTT--GATAAGTTGTCGC-CTC-ACT------GCTTATAATATATCCTCAGATGATA---GAT-TTCGATGCGCTCCTTT-AAAATAGC--AACAAACAATAA--GC---TA---AC-GTCTA----CT----------CCCGTC-C--C-----GG---AG-G-TTG--------------AC--TG----ATTTGTTTACA-C-AGTGGCA-ACA----C---A-CA---TTATACATGA-GTCATG-AAATGG-CGTCACTGCCAATTC-AAATTTCAGACGAGACTCTCGA-CAGGGATAAGGTAT-AGAAC--AG--AAACACGATAAAT
gi|6 : G-TCGCTAGTT-CATG--TGTAAAACTGCC----CCAGCGTTTCG-TCC---------------------------C-------AGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TATTAACTGTCTC----CT----------TCCAAT-C--CC----GG---AG-GTTTGAATGAATATTGCT------GCTCCATT-GTTTACA-CTAGATGCA-G-A----C---A-CAACATCATACATGACGCCATGCAAAGGGCCGTCACT-CCAGTTC-AAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAA
gi|7 : -TCAAATTGT--AT----CACG-CCAAAC-TCT--TCAAAGTTGTCGCTCTCACCTCTCATAG-TT-AAATAT-TCCTTCAAC-AT-----ATCTTTGCTGCGCTCTTGTTAA
gi|7 : TCTT----TT----------CCCTTT-C--CCCCTTGG---AG-GTTTGAAT----CTCGCT-A---------ATTC--TTACA-TTATTAGTA-G-A----C---A-CA-------ACATAACGCCATGCAAAGGGCCGCTACT-CCAATTT-ATATTACAGACGA-GCCCTCGA-CAGGGATAAAGTAtctttattgggtttgtttttactgttggggtctagtcatttcttttccctttcccccttggaggtttgaatctcgctaattcttacattattagtagacacaacataacgccatgcaaagggccgctactccaatttatattacagacgagccctcgacagggataaagtaat
gi|8 : tcaaattgtatcacgccaaactcttcaaagttgtcgctctcacctctcatagttaaatattccttcaacatatctttgctgcgctcttgttaatctttattgggtttgtttttactgttggggtctagtcattTT-CATG--TA-ACAC-TGCCT---C-AGCGTTTCG-TCCAATTTT--AT----CGTGTC-AAAC-CCT--AATAAGTTGTCGCTCTC-ACT------G-TTAAAATAT-TCCTTTAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CTCGATCC--C-----AG---AG-GTTTGGATGAATCTCG----C--TGCTCCATTat
gi|9 : -AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAATATAATT-TA-A-TT-----A-ACATTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-TCAAACACATCGTTCACTGTGTTCAT-TAGT-TTTGAg
blockSeqs : . C T CG G AG G T TTTTTTTA A A CA A . GT A TT T G T G TCA T CT A . AG C CGGGC C TA AATC AC T TCG A AA CTCATA C A A C G G A T A A G GAT TTA TTCC TTCCCACTTC G C TC CCCTT CCG A TG CTGCTCC T T AT C C ATTAC A ACATC G T A T GT TA A T G A T
blockSeqs : . C . . C . . . CTAC A . . . . . . AT C G C . TA . CA . . GT . GGC . . T TG . TCG T GA . . A . G . G C T C T . . . . . C . . C . . AT GCTCC T . TT . . CACA . TC . . T . GT . A . A A .
blockSeqs : . . . . G . . . ATTA . . . . . . . TC T . A . . . CT . . A . CC . . . TC . A A AC . . A . G . G C C A A . . . . . C . . . . . AG GCTTC T . TT . . C . TC . . T . . . A . A T .
blockSeqs : . . G . . . TTA . . . . . . . T C . A . . . A . . C . CC . . . CC . G A A . . A . A . G C C A A . . . . . G . . . . . TG GACCT C . TG . . A . TT . . A . . . A . . T .
blockSeqs : . . . . . TTA . . . . . . . T C . A . . T . . T . TC . . . TC . T A A . . A . C . . . T C T . . . . A . . . . . TG GCTCC . . AT . . C . . . . A . . . A . .
blockSeqs : . . T . . . . . . A . . . . . T . A . A . . . . C . . . C A A . . . . T . . . . . T ACTA . . TA . . C . . . . T . . . A .
blockSeqs : . . . . . . . A . . . . T . . . . . . . . G . . . . . . ACTG . . A . . C . . . . T . . . .
blockSeqs : A . . . . A A . . . .
blockSeqs : . . .
blockSeqCons : TTA******* T** T** ** N* CGC*** TC* A* G*** GCTCC******
originalCons : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT-ATGTCCTCTCG-TCGCTAGTT-CATG--TATAAAA-TGCC----C-AGCGTTTCG-TCCAATTTT--AT----CGTG-C-AAAC-TCT--GATAAGTTGTCGCTCTCAACT------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-AC--TGCTCCATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
finalCons : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-ATTA-------AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGAT--AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT--TGTCCTCTCG-TCGCTAGTT-CATG--TN-AAAA-TGCCCGC---AGCGTTTCG-TCCAATTTT--AT----CGTGTC-AAAC-TCT--GATAAGTTGTCGCTCTCA-CT------G-TTAAAATAT-TCCTTCAAT-ATAG---ATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCTGCTCC------ATTTGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAATTT-AAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
Alignments
lowQualScore : 1 2222222222 1 111 1 111 11 11 1 3333 1111 111 1111111 1111 111 111 1111 2222222222 11111 1111111111 111 11111111 11111 11
lowQualScore : 0 2 8 99 2 99 6 6 0000000000 3 6 99 6 6 77 5 333 0 1 1 5 5 999 11 0 6 66 5 77 22 1 3333 5 66 5555 77 0 5 666 3 4 4 4444444 4 7 4 1 5 4444 5 2 3 3 0 8 0 0 000 000 0000 1111111111 1 5 66 77777 888 5 0 33 3333333333 1 111 5 44 5 5 22222222 5 99999 5 5 1 4 11 55 1 5 9 0 1 8
lowQualScore : . . . .. . .. . . .......... . . .. . . .. . ... . . . . . ... .. . . .. . .. .. . .... . .. .... .. . . ... . . . ....... . . . . . .... . . . . . . . . ... ... .... .......... . . .. ..... ... . . .. .......... . ... . .. . . ........ . ..... . . . . .. .. . . . . . .
lowQualScore : 0 5 0 22 5 22 7 7 2222222222 3 7 22 7 7 99 7 999 7 7 4 1 7 888 00 8 7 00 7 99 44 4 0000 0 99 6666 88 8 0 000 4 4 4 4444444 4 3 4 4 0 4444 6 2 1 6 8 0 8 8 000 000 6666 9999999999 4 0 99 55555 888 0 1 00 2222222222 0 222 0 44 0 0 55555555 0 55555 0 0 0 0 00 55 9 7 8 6 4 0
consensus : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT--TGT--CCTCTCG-TCGCTAGTT-CATG--TN-AAAA-TGCCC---CAGCGTTTCG-TCCAATTTT--AT----CGTGTCAAAC-TCT--GATAAGTTGTCGCTCT-CA-CT-------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-----GCTCCATT--TGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAA-TTTAAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
Reference ( family-345 ) : CGGTA-AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-TT-----A-AC-TTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-T-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT--TGT--CCTCTCG-TCGCTAGTT-CATG--TN-AAAA-TGCCCG--CAGCGTTTCG-TCCAATTTT--AT----CGTGTCAAAC-TCT--GATAAGTTGTCGCTCT-CA-CT-------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCT-----GCTCCATT--TGTTTACA-CTAGNTGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGCCACT-CCAA-TTTAAATTNCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
gi|1 : CGGTACAAATAATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAAAATAATT-TA-A-C--------AC-TTT-CA--AAACTA-TATTTTGTGTATAGTTATA--A-TCCTGTCAAAGAAT-AAACACATCGTTCACTGTGTTCAT-TAGT-TTTGACCT--TGTGTCCTCTCG-TCGCTCGTT-CATGAATGTAAAA-TGCCC----AGCGCTTCG-TCCAATTTT--AT----CGTG-CAAAC-TGT--AATAAGTTGTCGCTCT-CAACT-------G-TTAAAATAT-TCCTTCAAT-ATATAAGATCTTCGATGCGCTCTTGTAAAAATA-CAA--CAAACAATAAGGGC---TA---ACTGTCTC----CT----------CCCGAT-C--C-----GG---AG-GTTTGAATGAATCTCGCTACACTGCTCCATT--TGTTTACA-CTAGATGCA-G-A----C---A-CA---TCATACATGACGTCATGCAAAGGGCCGTCACT-CCAA-TTTAAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAAATTAAAGA-TTGGATT
gi|10 : CT-CCAA-TTTAAATTACAGACGAGGCCCTCGA-CAGGGATAGGGTATAAGAAC--AG--AAACACGATAAATG-
gi|11 : ATCTCGCT-----GCTCCA-T--TGTTTACA-CTAGA--CA-G-A----CACAA-CA---TCATACATGACGTAATGCAAAGGga
gi|12 : TTTTAGACAAGGGTCTCGA-CAGTGATAAGGT-TAA-AACGTAG--AGACACGAT
gi|13 : GTATAAGAAC--AGTAAAACACGATAAATG-TTTGAATTAAATA-TTGGATTtta
gi|14 : AGGTGTA--A-TCCTGTTGAAGA-TTAAACACATATTTCATTTTGTTTAT-TTGT-TTacgat
gi|15 : GACGAGGCCCTCGA-CAGGGATAAGGTATACGAA---AG--AAACACGATAAA
gi|16 : AGTTGTCGCTCT-CA-CT-------G-TTAAAATAG-TCCga
gi|2 : TA-AAATCATGTCATGTTATATAAA-AAGAAA--AATAAAGGATA--CAGACTT-ACCAAATTAATA-TT-A-CT-----ACAC-TTC-----AAAGTA-TATTTTGT--ATAGGTATA--AATCCTGTCAAGAA-T-AAACACATCGTTCACTGTGTTCATGTCGT-TTTGACC----GT--TCTC-CG-TCGCTAGTT-CATG--TA-AACA-TGCCC---CAGCGTTTTGCTCCAATTTTTAATT---CGTGACAACC-TCT--AATAAGTTGTCGCTCT-CA-CT-------G-TTAAAATAT-TCCTTCAAT-A-A---GATATT-GATGAGTCGTTGTAAAA-TA-CAAAACAAACAACAAGGACGATTA---ACTGTCTC----CT----------CCCGAT-CTCC-----GG---AG---TTGAATGAATCTTGCT-----GCTTCATT---GTTTACA-CTAGATGCA-G-AATTAC---AACA---TCATACAT------ATGCAAAGGCCCGTC-CT-CCAA-TTTAAATTTCAGACGAAACCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACAATAAATGTTTTAAATTAATGA-TTGGATT
gi|3 : ATACAAATCATGAT--AATAAAG-ATA--CTGACTTTACCAAAATAATT-TC-A-TT-----A-AC-TGCACA--AAAGTA-CATTTTGTG-ATACGTATA--A-TTCTTTCAAAGAAT-AAGCACATCCTTCATTGTGTTCAT-TAGT-TTTGACCTA-TGT--CCTTTCG-TCGCAAGTC-CATG--TC-AAAA-GGCCCGGGCAGCGTTTCG-TCCAATTTA--AT----CGTGTGAAGC-TCTTCGAT--GTTGTCACTCT-AA-CA-------A-TT-AAACAT-TCCTTGAAT-ATA-------TTTGCTGTGCTCTTGTTAAacga
gi|3 : TGAGGTC---TA---ATTGTTTC----TTTTCCCACTTCCCCCAG-C--C-----GG---AA-GTTTGAAATAATTTGGCT-----GACCTAAT--TGTTTACA-TTAGTTGCA-G-A----C---A-CA-------ACATGACGTCAATCAAAGGGCAGCTACT-TCAATTTTGGATTACGAACGAGGTCCTAGA-CAGGGATAAGG--TAACACCGTAA--AAACACCAT--TTG-TTT---TTTAAGA-TTAGATTcccttattgtatcttttttactgttgaggtctaattgtttcttttcccacttcccccagccggaagtttgaaataatttggctgacctaattgtttacattagttgcagacacaacatgacgtcaatcaaagggcagctacttcaattttggattacgaacgaggtcctagacagggataaggtaacaccgtaaaaacaccatttgttttttaagattagatt
gi|4 : atacaaatcatgataataaagatactgactttaccaaaataatttcattaactgcacaaaagtacattttgtgatacgtataattctttcaaagaataagcacatccttcattgtgttcattagttttgacctatgtcctttcgtcgcaagtccatgtcaaaaggcccgggcagcgtttcgtccaatttaatcgtgtgaagctcttcgatgttgtcactctaacaattaaacattccttgaatatatttgctgtgctcttgttaacccttattgtatcttttttactgt--AATAAAGCACA--CTGACTTTAC--AATTAATT-TATA-TTTTTTTA-AC-ATG-CACAAAAGTAAGATTTTGTG-ATACGTATA--A-TTCTTTCTAAGA-T-AAGCAC-TCCTTCA-TGTGTTCAT-T-TT-TTTGACCTCATGT--CCTTTCGTTCGA-AGTCACATG--TT-CAAA-GGCCGG--CAGCGTTTCG-TCCAATTGT--ATAATCTGTGT-AAGC-TCTTCGACTGTTTGTCACTCTAGA-CA-------A-TT--AACAT-TC--TGAAT-ATA-------TTTG-CGTGCTCTTGTAA
gi|4 : atacaaatcatgactTGAGGTC---TA---A-TGTTTCTTCCCC----------CCCCAC-C--C-----AGCCGAGAGTTTGAAAGAATTTCG-T-----G----ACTAATGTTTACATCTAGTT-CACG-A----A---A-CA-------ACATGGCGTCAATCATAGGGCAGCTACT-TCAA-TTTGGATTACCGAAGAGGTCCTAGATC--GGATAAGGTAAAACGTT--AA--AAACACCAT--TTG-TTT---TTTAAGATTTAGATTcccttattgtatctttttttacttttgaggtctaatgtttcttccccccccacccagccgagagtttgaaagaatttcgtgactaatgtttacatctagttcacgaaacaacatggcgtcaatcatagggcagctacttcaatttggattaccgaagaggtcctagatcggataaggtaaaacgttaaaaacaccatttgttttttaagatttagatt
gi|5 : atacaaatcatgactaataaagcacactgactttacaattaatttatatttttttaacatgcacaaaagtaagattttgtgatacgtataattctttctaagataagcactccttcatgtgttcatttttttgacctcatgtcctttcgttcgaagtcacatgttcaaaggccggcagcgtttcgtccaattgtataatctgtgtaagctcttcgactgtttgtcactctagacaattaacattctgaatatatttgcgtgctcttgtaacccttattgtatctttttttactttCGGTA-AAATCATGT-ATGTTATATAAA-AAAGGACGAATAAAGGATAAGCAGACGTTACCAAAATAATTGTA-AATT-----A-ACATTT-CA--AA-GTA-TATTTT-TG-ATAGGTATAGTA-TCCTGTCAAAGA-T-AAACACATTGTACACTGTGTTCATGTAGTGTTTGAC-T--TGT--TGTCTAG-TCG-TCGTT-CATG--TA-GAAACTGCC------GCGTTTCG-TCCAATTTT--AT----CGTGTCAAACTTTT--GATAAGTTGTCGC-CT-CA-CT-------GCTTATAATATATCCTCAGATGATA---GAT-TTCGATGCGCTCCTTT-AAAATAGC--AACAAACAATAA--GC---TA---AC-GTCTA----CT----------CCCGTC-C--C-----GG---AG-G-TTGA----------CT-----G----ATT--TGTTTACA-C-AGTGGCA-ACA----C---A-CA---TTATACATGA-GTCATG-AAATGG-CGTCACTGCCAA-TTCAAATTTCAGACGAGACTCTCGA-CAGGGATAAGGTAT-AGAAC--AG--AAACACGATAAAT
gi|6 : G-TCGCTAGTT-CATG--TGTAAAACTGCCC---CAGCGTTTCG-TCC--------------------------C-------AGTTGTCGCTCT-CA-CT-------G-TTAAAATAT-TCCTTCAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TATTAACTGTCTC----CT----------TCCAAT-C--CC----GG---AG-GTTTGAATGAATATTGCT-----GCTCCATT---GTTTACA-CTAGATGCA-G-A----C---A-CAACATCATACATGACGCCATGCAAAGGGCCGTCACT-CCAG-TTCAAATTTCAGACGAGGCCCTCGA-CAGGGATAAGGTATAAGAAC--AG--AAACACGATAAATG-TTTAA
gi|7 : -TCAAATTGT--AT----CACGCCAAAC-TCT--TCAAAGTTGTCGCTCT-CA-CCTCTCATAG-TT-AAATAT-TCCTTCAAC-AT-----ATCTTTGCTGCGCTCTTGTTAA
gi|7 : TCTT----TT----------CCCTTT-C--CCCCTTGG---AG-GTTTGAAT----CTCGCT-----A----ATT--C--TTACA-TTATTAGTA-G-A----C---A-CA-------ACATAACGCCATGCAAAGGGCCGCTACT-CCAA-TTTATATTACAGACGA-GCCCTCGA-CAGGGATAAAGTAtctttattgggtttgtttttactgttggggtctagtcatttcttttccctttcccccttggaggtttgaatctcgctaattcttacattattagtagacacaacataacgccatgcaaagggccgctactccaatttatattacagacgagccctcgacagggataaagtaat
gi|8 : tcaaattgtatcacgccaaactcttcaaagttgtcgctctcacctctcatagttaaatattccttcaacatatctttgctgcgctcttgttaatctttattgggtttgtttttactgttggggtctagtcattTT-CATG--TA-ACAC-TGCCT---CAGCGTTTCG-TCCAATTTT--AT----CGTGTCAAAC-CCT--AATAAGTTGTCGCTCT-CA-CT-------G-TTAAAATAT-TCCTTTAAT-ATA---GATCTTCGATGCGCTCTTGTAAAAATA-CAAAACAAACAATAAGGGC---TA---ACTGTCTC----CT----------CTCGATCC--C-----AG---AG-GTTTGGATGAATCTCGCT-----GCTCCATT--at
gi|9 : -AAATCATGTCATGTTATATAAA-AAGGAA--AATAAAGGATA--CAGACTTTACCAATATAATT-TA-A-TT-----A-ACATTT-CA--AAAGTA-TATTTTGTG-ATAGGTATA--A-TCCTGTCAAAGA-TCAAACACATCGTTCACTGTGTTCAT-TAGT-TTTGAg