lowQualScore : 111
lowQualScore : 5 66 222 2 444 2 2 33
lowQualScore : . .. ... . ... . . ..
lowQualScore : 3 33 000 7 777 7 7 77
consensus : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
Reference ( gi|6 ) : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|5 : CTATTT-AT--ACGTCAT---TT-TTGGAGGAAA---TG-TTTTAA--TCAACCA
gi|4 : CTATTT-AT--ACGTCAT---TT-TCGCAGGAAA---TG-TTTT-CTTTCAGCCA
gi|8 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|7 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|15 : CTATTT-AT--GCGTCAT---TT-T-GCAGGAAA---TA-ATTT-A--TCAGCCA
gi|1 : CTATTTTATGGACGTCAT---TTATTGCAGGAAAAGTTG-TTTT-A--TCAGCCA
gi|3 : CTATTTCAT--ACGTAATA--TT-TTGCAGGAAA---TGTTTTT-A--TCAGC
gi|2 : CTATTT-ATG-ACGTCAT---TT-TTGCAGG--A---TG-TTTT-A--TTAaa
gi|14 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCAtcatgccaa
gi|13 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|12 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|11 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|10 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|9 : TATTT-AT--ACGTCAA---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|16 : T-AT--ACGTCAT---TT-TAGCAGGAAA---TG-TTTT-A--TCAGCC
Alignments
lowQualScore : 111
lowQualScore : 5 55 111 2 444 2 2 33
lowQualScore : . .. ... . ... . . ..
lowQualScore : 0 99 222 5 444 5 5 44
consensus : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
Reference ( family-3419 ) : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|1 : CTATTTTATGGACGTCAT---TTATTGCAGGAAAAGTTG-TTTT-A--TCAGCCA
gi|10 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|11 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|12 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|13 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|14 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|15 : CTATTT-AT--GCGTCAT---TT-T-GCAGGAAA---TA-ATTT-A--TCAGCCA
gi|16 : T-AT--ACGTCAT---TT-TAGCAGGAAA---TG-TTTT-A--TCAGCC
gi|2 : CTATTT-ATG-ACGTCAT---TT-TTGCAGG--A---TG-TTTT-A--TTA
gi|3 : CTATTTCAT--ACGTAATA--TT-TTGCAGGAAA---TGTTTTT-A--TCAGCtcatgccaa
gi|4 : CTATTT-AT--ACGTCAT---TT-TCGCAGGAAA---TG-TTTT-CTTTCAGCCAaa
gi|5 : CTATTT-AT--ACGTCAT---TT-TTGGAGGAAA---TG-TTTTAA--TCAACCA
gi|6 : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|7 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|8 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|9 : TATTT-AT--ACGTCAA---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
Alignments
lowQualScore : 111
lowQualScore : 5 55 111 2 444 2 2 33
lowQualScore : . .. ... . ... . . ..
lowQualScore : 0 99 222 5 444 5 5 44
consensus : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
Reference ( family-3419 ) : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|1 : CTATTTTATGGACGTCAT---TTATTGCAGGAAAAGTTG-TTTT-A--TCAGCCA
gi|10 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|11 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|12 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|13 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|14 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|15 : CTATTT-AT--GCGTCAT---TT-T-GCAGGAAA---TA-ATTT-A--TCAGCCA
gi|16 : T-AT--ACGTCAT---TT-TAGCAGGAAA---TG-TTTT-A--TCAGCC
gi|2 : CTATTT-ATG-ACGTCAT---TT-TTGCAGG--A---TG-TTTT-A--TTA
gi|3 : CTATTTCAT--ACGTAATA--TT-TTGCAGGAAA---TGTTTTT-A--TCAGCtcatgccaa
gi|4 : CTATTT-AT--ACGTCAT---TT-TCGCAGGAAA---TG-TTTT-CTTTCAGCCAaa
gi|5 : CTATTT-AT--ACGTCAT---TT-TTGGAGGAAA---TG-TTTTAA--TCAACCA
gi|6 : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|7 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|8 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|9 : TATTT-AT--ACGTCAA---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
blockSeqs : C G GTT . . T A TT
blockSeqs : . . GTT . . . . .
blockSeqs : . . A . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** ***
originalCons : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
finalCons : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
Alignments
lowQualScore : 111
lowQualScore : 5 55 111 2 444 2 2 33
lowQualScore : . .. ... . ... . . ..
lowQualScore : 0 99 222 5 444 5 5 44
consensus : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
Reference ( family-3419 ) : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|1 : CTATTTTATGGACGTCAT---TTATTGCAGGAAAAGTTG-TTTT-A--TCAGCCA
gi|10 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|11 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|12 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|13 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|14 : TATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|15 : CTATTT-AT--GCGTCAT---TT-T-GCAGGAAA---TA-ATTT-A--TCAGCCA
gi|16 : T-AT--ACGTCAT---TT-TAGCAGGAAA---TG-TTTT-A--TCAGCC
gi|2 : CTATTT-ATG-ACGTCAT---TT-TTGCAGG--A---TG-TTTT-A--TTA
gi|3 : CTATTTCAT--ACGTAATA--TT-TTGCAGGAAA---TGTTTTT-A--TCAGCtcatgccaa
gi|4 : CTATTT-AT--ACGTCAT---TT-TCGCAGGAAA---TG-TTTT-CTTTCAGCCAaa
gi|5 : CTATTT-AT--ACGTCAT---TT-TTGGAGGAAA---TG-TTTTAA--TCAACCA
gi|6 : CTATTT-AT--ACGTCAT---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA
gi|7 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|8 : CTATTT-AT--ACGTCATGTTTT-TTGCAGGAAA---TG--TTT-A--TCAGC
gi|9 : TATTT-AT--ACGTCAA---TT-TTGCAGGAAA---TG-TTTT-A--TCAGCCA