lowQualScore : 4444 2 11 2 444444444444444 2222222222 1 1 111 11111111111111 11111 11 1
lowQualScore : 1 0 6666 0 88 0 8 8 444444444444444 9999999999 6 3 2 6 8 6 6 3 2 2 2 2 2 6 2 33 222 6 66666 66666666666666 2 2 00000 2 22 0
lowQualScore : . . .... . .. . . . ............... .......... . . . . . . . . . . . . . . . .. ... . ..... .............. . . ..... . .. .
lowQualScore : 0 7 0000 0 55 0 0 0 444444444444444 8888888888 7 3 5 7 0 7 7 3 5 2 2 2 2 7 2 11 888 7 88888 11111111111111 1 1 33333 2 00 0
consensus : GCGAGATCAGGCCGATCGAATGTCATTGTGCATTAATAATACCATTGCATGTAACCTG-AATAGGC-ACACTAAATGT---TT-ATAT----ACTATCAA-CAAA-----TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCGCTG
Reference ( gi|5 ) : GCGAGATCAGGTCGGTCGAATGTCAT-A--CATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG----TT-ATAT----ACTATCAA-CACA-----TATCACA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACC-TCTTT-CGCACTG
gi|4 : GCGAGATCAGGTCGATCAAATGTCAT-ATGCATTAATAATATCATTGCATGTAACCTGAAATAGGCAACACTAAATATGTTTT-ATATATAAACTATCAA--ACAAAAATTATCAAATTTGGAA-CAGAA-GAACGGAAAC-ATACGATATT-ACCTGTC-TTTCAT-TC-TTT-GT-C-AC-AA--AA---TGTA-CGC-----G--------------CA---TTTGG-----TG-TCAATAAAT
gi|1 : cccttatgacgcacaacctgtattgttacccttcttgtactggatgggaatgtgtggcatttaagtcttgtacaaaagtgttagctgGCGCGACCAGGCCAATCGAATGTCATTG--CATT-ATAA--CCA-TGGATGTAACCTG-AGCATTT-ACACTAAATG----TT-A-------------------A-----TGTCACA-TTGGAACCAGAA-GAACGG-AAC--------A-T-ACCTGTC-TTTCAC-TA-TTT-GTTT-AC-AA--AAC--TGTA-CGC---T-GCTTGGTCTTTATACCA-T-TGTGG-----TA-TCAACAAATACACT-TATTT-CGCGCTGt
gi|3 : gttaattaaagaaaagtcggaagagacattcgtgcaaatagagagtatattgatagaatcagaattatttcctcattatgacacataattttaaatattacctatcatcaaacagtaaacacctgtcatatcattcaccattgaattcaaatattcatcagggtatttaatgaagccctgaatccaaaagtgacacttattacacataacctgatgtattgttagatctcacaaagaccacttcttgtctagatgggaatgtttgcagtttaatgagtcagtcctgtacaaaagtgttagatgGTGAGATCAGGCCGGTCGAATG
gi|6 : atattcgtgcaaatagagggtacatatacctatattgatagaatcaaaattaaatttcctcattatgacacataattgtaaatccctgagattgattattacctctcatcaagcaataaacacctgtcatatcatttataacattttgtatcccaaagtgacacttattacacataacctgatgttagaaaccacttcttgtctagatgccaatagatggcaatgtttgcagtttaatgagtcagtcttgtacaaaagtgtaagatgGCATGTATCCTG-AATAGGC-ACACTAAATG----T----------ACTATCAA-CAAA-----TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-GTA-TTACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-ATTGG-----TG-TCAACAAATACACC-ACTTT-CGCACTGat
gi|7 : GCATGTAACCTG-AATAGGC-AGACTAAATGT---TT-ATAT----ACTATCAACCAAA-----TATCAAACTTGGAACCAGGATGATCGG-AGCAATAC-ATATT-ACCGATCTTTTCAC-TCATTT-GTCC-AC-AAATAA---GGTA-CGC---T-G--------------CATT-TTTGG-----TGTTCAACAAATA
gi|15 : GCATGTAACCTG-AATAGGC-AGACTAAATG----TTTATAT----ACTATCAA-CAAA-----TATCAAA-TTGGAACCAGGA-G
gi|11 : CA-TTGGAAGCAGAA-GAACGG-AAC-ATAC-ATATT-GCCTGTC-TTTCAC-TC-TTT-GTTC-ACAAA--AA---TGTA-CGC---T-G--------------C-----TTGG-----T
gi|14 : gC-ATAC-ATG-T-ACCTGTC--TTCACTTC-TTTCGTCC-AC-AA--AAAGTTGTA-AGTAAAT-GGCC-----------CA-TCTTTGG-----TG-TCActgtataccgttttgatgcca
gi|23 : A-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTG-CAC-----G--------------C--T-TTTGG-----TG-TCAACAA
gi|26 : -T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------TA---TTTGG-----TG-TCAAC
gi|24 : -T-ACCTGTC-TTTCAC-TC-TTT-GTC--AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTCGG-----TG-T-AACAAA
gi|25 : -ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTT-G-----TG-TCAACAA
gi|22 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|21 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|20 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|19 : -ACCTGTC-TTTCAC-TC-TT--GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGGGC---TG-TCAACAA
gi|13 : -ACCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACTGTCTTTGCGCACTG
gi|17 : -ACTCGTC-TTTCAC-TC-ATT-GT-C-A--AA--AA---TGTA-CGCT--T-G--------------CA-T-TTTGGGGGGTTG-TCAACAAg
gi|18 : CCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACAC
gi|27 : -TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTATTGC---T-G--------------CA-T-TGTGGT----TG-TCAt
gi|12 : -G--------------TA-T-TTTTT-----TG-TCAACAAATACACT-TCTTT-
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TTGTTAATTTAAGAAACAGTGGGAAGACATTCGTTCAAATAGAAGCATATGGACAGAATCAGAAAGGTGTAAAAGGTTTCTCGGTTTGCCATTGGAAAAATTGTATAAGAGATACCGTTTTATTTGGCTTTCATTCAGGAATGTTTTTATAAGCAATCAAAACATACCCACCTTCAAGAACACCAGTGAAACTACTATAGTTTATCCCTCATTACTGACACACAATCCCTGAGATTGATTATTACCTATCATCAACAACAAAACACCTGTATATCATTTACCATGGAATTCAAATATTCATCAGGGATTCAATGAGCAGTTGAAGCCAAAAGTGACATTATTACACAAACCTGATATGTTTAGATCCACAAAGACCACTTCTTGTCTGGATG
Unaligned ( gi|8 ): TTGTTGATTTTTAAAAGAAACAGTTGGAAGACATTCGTGCAAATAGAGAGTATATTGATAGAATCAGAAAAAGGTGTAAACATTTCTCGGTTTGCAAGTGGACAATTTTATACCGGTAATAAGAAATACACTTTTT
Unaligned ( gi|9 ): TGTTATTTAAGAACAATGGAGAAAACATTCGTTCAAATAGAAAGCATATGACATAATCAGAAGGTGTAAAAATTCTCTCGGCTTGCCAGGTTTGGAATTTTTTTTATAAGAGAATACGTTTAAA
Unaligned ( gi|10 ): AACATTCTCGCAAATCACGAGAGTATACAAATTTGACTAGAATAGCCCCACCATAAAAATTCCTCTATTACGACACATGAAATTGTTGCAAATTCCCGAGATCTTGATATATTACC
Unaligned ( gi|16 ): GTTACCCTTATGACGCACAACCTGATATTGTTACCACTTCTTGTCTGGATGGGAATGTGTG
Alignments
lowQualScore : 4444 2 1 22222222222222 111 1 1 111 11111111111111
lowQualScore : 6666 3 7 5 6 6 33333333333333 6 6 111 1 0 5 6 5 5 2 2 2 2 2 2 6 2 22 222 6 55555 55555555555555 2 2 99999 2 6 8 2
lowQualScore : .... . . . . . .............. . . ... . . . . . . . . . . . . . . .. ... . ..... .............. . . ..... . . . .
lowQualScore : 3333 7 3 3 7 7 33333333333333 7 7 777 4 7 7 7 7 7 0 4 1 1 1 1 3 1 99 111 3 99999 22222222222222 0 0 88888 1 7 0 0
consensus : GCGAGATCAGGCCGGTCGAATGTCAT-G-GCATTA-TAATACCAT-GCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
Reference ( family-3417 ) : GCGAGATCAGGCCGATCGAATGTCATTGTGCATTAATAATACCATTGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCGCTG
gi|1 : GCGCGACCAGGCCAATCGAATGTCATTG--CATTA-TAA--CCATGG-ATGTAACCTG-AGCATTT-ACACTAAATG---TT---------------------AA---TGTCACA-TTGGAACCAGAA-GAACGG-AAC--------A-T-ACCTGTC-TTTCAC-TA-TTT-GTTT-AC-AA--AAC--TGTA-CGC---T-GCTTGGTCTTTATACCA-T-TGTGG-----TA-TCAACAAATACACT-TATTT-CGCGCTG
gi|11 : gttaattaaagaaaagtcggaagagacattcgtgcaaatagagagtatattgatagaatcagaattatttcctcattatgacacataattttaaatattacctatcatcaaacagtaaacacctgtcatatcattcaccattgaattcaaatattcatcagggtatttaatgaagccctgaatccaaaagtgacacttattacacataacctgatgtattgttagatctcacaaagaccacttcttgtctagatgggaatgtttgcagtttaatgagtcagtcctgtacaaaagtgttagatgA-TTGGAAGCAGAA-GAACGG-AAC-ATAC-ATATT-GCCTGTC-TTTCAC-TC-TTT-GTTC-ACAAA--AA---TGTA-CGC---T-G--------------C-----TTGG-----T
gi|12 : gc-G--------------TA-T-TTTTT-----TG-TCAACAAATACACT-TCTTT-ctgtataccgttttgatgcca
gi|13 : gtgcaaatagagagtatattgataaaatgaggtgtaaaagtttctcgggttgttttatggg-ACCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACTGTCTTTGCGCACTG
gi|14 : C-ATAC-ATG-T-ACCTGTC--TTCACTTC-TTTCGTCC-AC-AA--AAAGTTGTA-AGTAAAT-GGCC-----------CA-TCTTTGG-----TG-TCAg
gi|15 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGGA-G
gi|17 : -ACTCGTC-TTTCAC-TC-ATT-GT-C-A--AA--AA---TGTA-CGCT--T-G--------------CA-T-TTTGGGGGGTTG-TCAACAA
gi|18 : CCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACT-
gi|19 : -ACCTGTC-TTTCAC-TC-TT--GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGGGC---TG-TCAACAA
gi|20 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|21 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|22 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|23 : A-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTG-CAC-----G--------------C--T-TTTGG-----TG-TCAACAA
gi|24 : -T-ACCTGTC-TTTCAC-TC-TTT-GTC--AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTCGG-----TG-T-AACAAA
gi|25 : -ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTT-G-----TG-TCAACAA
gi|26 : -T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------TA---TTTGG-----TG-TCAAC
gi|27 : -TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTATTGC---T-G--------------CA-T-TGTGGT----TG-TCA
gi|3 : GTGAGATCAGGCCGGTCGAATG
gi|4 : atattcgtgcaaatagagggtacatatacctatattgatagaatcaaaattaaatttcctcattatgacacataattgtaaatccctgagattgattattacctctcatcaagcaataaacacctgtcatatcatttataacattttgtatcccaaagtgacacttattacacataacctgatgttagaaaccacttcttgtctagatgccaatagatggcaatgtttgcagtttaatgagtcagtcttgtacaaaagtgtaagatgGCGAGATCAGGTCGATCAAATGTCAT-ATGCATTAATAATATCATTGCATGTAACCTGAAATAGGCAACACTAAATATGTTTTATATATAAACTATCAAA-CAAAAATTATCAAATTTGGAA-CAGAA-GAACGGAAAC-ATACGATATT-ACCTGTC-TTTCAT-TC-TTT-GT-C-AC-AA--AA---TGTA-CGC-----G--------------CA---TTTGG-----TG-TCAATAAATat
gi|5 : cccttatgacgcacaacctgtattgttacccttcttgtactggatgggaatgtgtggcatttaagtcttgtacaaaagtgttagctgGCGAGATCAGGTCGGTCGAATGTCAT---ACATTA-TAATACCAT-GCATGTAACCTG-AATAGGC-ACACTAAATG---TT-ATAT----ACTATC-AA-CACA---TATCACA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACC-TCTTT-CGCACTGt
gi|6 : GCATGTATCCTG-AATAGGC-ACACTAAATG---T----------ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-GTA-TTACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-ATTGG-----TG-TCAACAAATACACC-ACTTT-CGCACTG
gi|7 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AACCAAA---TATCAAACTTGGAACCAGGATGATCGG-AGCAATAC-ATATT-ACCGATCTTTTCAC-TCATTT-GTCC-AC-AAATAA---GGTA-CGC---T-G--------------CATT-TTTGG-----TGTTCAACAAATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTTAATTTAAGAAACAGTGGGAAGACATTCGTTCAAATAGAAGCATATGGACAGAATCAGAAAGGTGTAAAAGGTTTCTCGGTTTGCCATTGGAAAAATTGTATAAGAGATACCGTTTTATTTGGCTTTCATTCAGGAATGTTTTTATAAGCAATCAAAACATACCCACCTTCAAGAACACCAGTGAAACTACTATAGTTTATCCCTCATTACTGACACACAATCCCTGAGATTGATTATTACCTATCATCAACAACAAAACACCTGTATATCATTTACCATGGAATTCAAATATTCATCAGGGATTCAATGAGCAGTTGAAGCCAAAAGTGACATTATTACACAAACCTGATATGTTTAGATCCACAAAGACCACTTCTTGTCTGGATG
Unaligned ( gi|8 ): TTGTTGATTTTTAAAAGAAACAGTTGGAAGACATTCGTGCAAATAGAGAGTATATTGATAGAATCAGAAAAAGGTGTAAACATTTCTCGGTTTGCAAGTGGACAATTTTATACCGGTAATAAGAAATACACTTTTT
Unaligned ( gi|9 ): TGTTATTTAAGAACAATGGAGAAAACATTCGTTCAAATAGAAAGCATATGACATAATCAGAAGGTGTAAAAATTCTCTCGGCTTGCCAGGTTTGGAATTTTTTTTATAAGAGAATACGTTTAAA
Unaligned ( gi|10 ): AACATTCTCGCAAATCACGAGAGTATACAAATTTGACTAGAATAGCCCCACCATAAAAATTCCTCTATTACGACACATGAAATTGTTGCAAATTCCCGAGATCTTGATATATTACC
Unaligned ( gi|16 ): GTTACCCTTATGACGCACAACCTGATATTGTTACCACTTCTTGTCTGGATGGGAATGTGTG
Alignments
lowQualScore : 222 1 22222222222222 1 111 1 111 11111111111111
lowQualScore : 999 3 7 6 6 6 77777777777777 3 111 5 5 5 6 5 5 2 2 2 2 2 2 6 2 22 222 6 55555 55555555555555 2 2 99999 2 6 8
lowQualScore : ... . . . . . .............. . ... . . . . . . . . . . . . . . .. ... . ..... .............. . . ..... . . .
lowQualScore : 000 3 3 7 7 7 33333333333333 3 777 7 7 7 7 7 7 0 4 1 1 1 1 3 1 99 111 3 99999 22222222222222 0 0 88888 1 7 0
consensus : GCGAGATCAGGCCGGTCGAATGTCATA-GCATTA-TAATACCAT-GCATGTAACCTGAA-TAGGCA-CACTAAATGT---TTATATA----CTATCAA-CAAA---TATCAAA-TT-GGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
Reference ( family-3417 ) : GCGAGATCAGGCCGGTCGAATGTCATG-GCATTA-TAATACCAT-GCATGTAACCTGAA-TAGGCA-CACTAAATGT---TTATATA----CTATCAA-CAAA---TATCAAA-TT-GGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
gi|1 : GCGCGACCAGGCCAATCGAATGTCATT-GCATTA-TAA--CCAT-GGATGTAACCTGAG-CATTTA-CACTAAATGT---T--------------------AA---TGTCACA-TT-GGAACCAGAA-GAACGG-AAC--------A-T-ACCTGTC-TTTCAC-TA-TTT-GTTT-AC-AA--AAC--TGTA-CGC---T-GCTTGGTCTTTATACCA-T-TGTGG-----TA-TCAACAAATACACT-TATTT-CGCGCTG
gi|11 : gttaattaaagaaaagtcggaagagacattcgtgcaaatagagagtatattgatagaatcagaattatttcctcattatgacacataattttaaatattacctatcatcaaacagtaaacacctgtcatatcattcaccattgaattcaaatattcatcagggtatttaatgaagccctgaatccaaaagtgacacttattacacataacctgatgtattgttagatctcacaaagaccacttcttgtctagatgggaatgtttgcagtttaatgagtcagtcctgtacaaaagtgttagatgA-TT-GGAAGCAGAA-GAACGG-AAC-ATAC-ATATT-GCCTGTC-TTTCAC-TC-TTT-GTTC-ACAAA--AA---TGTA-CGC---T-G--------------C-----TTGG-----T
gi|12 : gc-G--------------TA-T-TTTTT-----TG-TCAACAAATACACT-TCTTT-ctgtataccgttttgatgcca
gi|13 : gtgcaaatagagagtatattgataaaatgaggtgtaaaagtttctcgggttgttttatggg-ACCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACTGTCTTTGCGCACTG
gi|14 : C-ATAC-ATG-T-ACCTGTC--TTCACTTC-TTTCGTCC-AC-AA--AAAGTTGTA-AGTAAAT-GGCC-----------CA-TCTTTGG-----TG-TCAg
gi|15 : -GCATGTAACCTGAA-TAGGCA-GACTAAATGT---TTATATA----CTATCAA-CAAA---TATCAAA-TT-GGAACCAGGA-G
gi|17 : -ACTCGTC-TTTCAC-TC-ATT-GT-C-A--AA--AA---TGTA-CGCT--T-G--------------CA-T-TTTGGGGGGTTG-TCAACAA
gi|18 : CCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACT-
gi|19 : -ACCTGTC-TTTCAC-TC-TT--GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGGGC---TG-TCAACAA
gi|20 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|21 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|22 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|23 : A-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTG-CAC-----G--------------C--T-TTTGG-----TG-TCAACAA
gi|24 : -T-ACCTGTC-TTTCAC-TC-TTT-GTC--AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTCGG-----TG-T-AACAAA
gi|25 : -ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTT-G-----TG-TCAACAA
gi|26 : -T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------TA---TTTGG-----TG-TCAAC
gi|27 : -TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTATTGC---T-G--------------CA-T-TGTGGT----TG-TCA
gi|3 : GTGAGATCAGGCCGGTCGAATG
gi|4 : atattcgtgcaaatagagggtacatatacctatattgatagaatcaaaattaaatttcctcattatgacacataattgtaaatccctgagattgattattacctctcatcaagcaataaacacctgtcatatcatttataacattttgtatcccaaagtgacacttattacacataacctgatgttagaaaccacttcttgtctagatgccaatagatggcaatgtttgcagtttaatgagtcagtcttgtacaaaagtgtaagatgGCGAGATCAGGTCGATCAAATGTCATATGCATTAATAATATCATTGCATGTAACCTGAAATAGGCAACACTAAATATGTTTTATATATAAACTATCAAACAAAAATTATCAAA-TTTGGAAC-AGAA-GAACGGAAAC-ATACGATATT-ACCTGTC-TTTCAT-TC-TTT-GT-C-AC-AA--AA---TGTA-CGC-----G--------------CA---TTTGG-----TG-TCAATAAATat
gi|5 : cccttatgacgcacaacctgtattgttacccttcttgtactggatgggaatgtgtggcatttaagtcttgtacaaaagtgttagctgGCGAGATCAGGTCGGTCGAATGTCATA--CATTA-TAATACCAT-GCATGTAACCTGAA-TAGGCA-CACTAAATGT---T-ATATA----CTATCAA-CACA---TATCACA-TT-GGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACC-TCTTT-CGCACTGt
gi|6 : -GCATGTATCCTGAA-TAGGCA-CACTAAATGT---------A----CTATCAA-CAAA---TATCAAA-TT-GGAACCAGAA-GAACGG-AAC-ATAC-GTA-TTACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-ATTGG-----TG-TCAACAAATACACC-ACTTT-CGCACTG
gi|7 : -GCATGTAACCTGAA-TAGGCA-GACTAAATGT---TTATATA----CTATCAACCAAA---TATCAAACTT-GGAACCAGGATGATCGG-AGCAATAC-ATATT-ACCGATCTTTTCAC-TCATTT-GTCC-AC-AAATAA---GGTA-CGC---T-G--------------CATT-TTTGG-----TGTTCAACAAATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTTAATTTAAGAAACAGTGGGAAGACATTCGTTCAAATAGAAGCATATGGACAGAATCAGAAAGGTGTAAAAGGTTTCTCGGTTTGCCATTGGAAAAATTGTATAAGAGATACCGTTTTATTTGGCTTTCATTCAGGAATGTTTTTATAAGCAATCAAAACATACCCACCTTCAAGAACACCAGTGAAACTACTATAGTTTATCCCTCATTACTGACACACAATCCCTGAGATTGATTATTACCTATCATCAACAACAAAACACCTGTATATCATTTACCATGGAATTCAAATATTCATCAGGGATTCAATGAGCAGTTGAAGCCAAAAGTGACATTATTACACAAACCTGATATGTTTAGATCCACAAAGACCACTTCTTGTCTGGATG
Unaligned ( gi|8 ): TTGTTGATTTTTAAAAGAAACAGTTGGAAGACATTCGTGCAAATAGAGAGTATATTGATAGAATCAGAAAAAGGTGTAAACATTTCTCGGTTTGCAAGTGGACAATTTTATACCGGTAATAAGAAATACACTTTTT
Unaligned ( gi|9 ): TGTTATTTAAGAACAATGGAGAAAACATTCGTTCAAATAGAAAGCATATGACATAATCAGAAGGTGTAAAAATTCTCTCGGCTTGCCAGGTTTGGAATTTTTTTTATAAGAGAATACGTTTAAA
Unaligned ( gi|10 ): AACATTCTCGCAAATCACGAGAGTATACAAATTTGACTAGAATAGCCCCACCATAAAAATTCCTCTATTACGACACATGAAATTGTTGCAAATTCCCGAGATCTTGATATATTACC
Unaligned ( gi|16 ): GTTACCCTTATGACGCACAACCTGATATTGTTACCACTTCTTGTCTGGATGGGAATGTGTG
Alignments
lowQualScore : 22 1 1 22222222222222 111 1 1 111 11111111111111
lowQualScore : 00 3 7 3 6 6 33333333333333 6 6 111 1 0 5 6 5 5 2 2 2 2 2 2 6 2 22 222 6 55555 55555555555555 2 2 99999 2 6 8
lowQualScore : .. . . . . . .............. . . ... . . . . . . . . . . . . . . .. ... . ..... .............. . . ..... . . .
lowQualScore : 00 3 3 3 7 7 33333333333333 7 7 777 4 7 7 7 7 7 0 4 1 1 1 1 3 1 99 111 3 99999 22222222222222 0 0 88888 1 7 0
consensus : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
Reference ( family-3417 ) : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
gi|1 : GCGCGACCAGGCCAATCGAATGTCATT-GCATT-ATAA--CCA-TGGATGTAACCTG-AGCATTT-ACACTAAATG---TT---------------------AA---TGTCACA-TTGGAACCAGAA-GAACGG-AAC--------A-T-ACCTGTC-TTTCAC-TA-TTT-GTTT-AC-AA--AAC--TGTA-CGC---T-GCTTGGTCTTTATACCA-T-TGTGG-----TA-TCAACAAATACACT-TATTT-CGCGCTG
gi|11 : gttaattaaagaaaagtcggaagagacattcgtgcaaatagagagtatattgatagaatcagaattatttcctcattatgacacataattttaaatattacctatcatcaaacagtaaacacctgtcatatcattcaccattgaattcaaatattcatcagggtatttaatgaagccctgaatccaaaagtgacacttattacacataacctgatgtattgttagatctcacaaagaccacttcttgtctagatgggaatgtttgcagtttaatgagtcagtcctgtacaaaagtgttagatgA-TTGGAAGCAGAA-GAACGG-AAC-ATAC-ATATT-GCCTGTC-TTTCAC-TC-TTT-GTTC-ACAAA--AA---TGTA-CGC---T-G--------------C-----TTGG-----T
gi|12 : gc-G--------------TA-T-TTTTT-----TG-TCAACAAATACACT-TCTTT-ctgtataccgttttgatgcca
gi|13 : gtgcaaatagagagtatattgataaaatgaggtgtaaaagtttctcgggttgttttatggg-ACCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACTGTCTTTGCGCACTG
gi|14 : C-ATAC-ATG-T-ACCTGTC--TTCACTTC-TTTCGTCC-AC-AA--AAAGTTGTA-AGTAAAT-GGCC-----------CA-TCTTTGG-----TG-TCAg
gi|15 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGGA-G
gi|17 : -ACTCGTC-TTTCAC-TC-ATT-GT-C-A--AA--AA---TGTA-CGCT--T-G--------------CA-T-TTTGGGGGGTTG-TCAACAA
gi|18 : CCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACT-
gi|19 : -ACCTGTC-TTTCAC-TC-TT--GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGGGC---TG-TCAACAA
gi|20 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|21 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|22 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|23 : A-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTG-CAC-----G--------------C--T-TTTGG-----TG-TCAACAA
gi|24 : -T-ACCTGTC-TTTCAC-TC-TTT-GTC--AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTCGG-----TG-T-AACAAA
gi|25 : -ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTT-G-----TG-TCAACAA
gi|26 : -T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------TA---TTTGG-----TG-TCAAC
gi|27 : -TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTATTGC---T-G--------------CA-T-TGTGGT----TG-TCA
gi|3 : GTGAGATCAGGCCGGTCGAATG
gi|4 : atattcgtgcaaatagagggtacatatacctatattgatagaatcaaaattaaatttcctcattatgacacataattgtaaatccctgagattgattattacctctcatcaagcaataaacacctgtcatatcatttataacattttgtatcccaaagtgacacttattacacataacctgatgttagaaaccacttcttgtctagatgccaatagatggcaatgtttgcagtttaatgagtcagtcttgtacaaaagtgtaagatgGCGAGATCAGGTCGATCAAATGTCATATGCATTAATAATATCATTGCATGTAACCTGAAATAGGCAACACTAAATATGTTTTATATATAAACTATCAAA-CAAAAATTATCAAATTTGGAA-CAGAA-GAACGGAAAC-ATACGATATT-ACCTGTC-TTTCAT-TC-TTT-GT-C-AC-AA--AA---TGTA-CGC-----G--------------CA---TTTGG-----TG-TCAATAAATat
gi|5 : cccttatgacgcacaacctgtattgttacccttcttgtactggatgggaatgtgtggcatttaagtcttgtacaaaagtgttagctgGCGAGATCAGGTCGGTCGAATGTCATA--CATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TT-ATAT----ACTATC-AA-CACA---TATCACA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACC-TCTTT-CGCACTGt
gi|6 : GCATGTATCCTG-AATAGGC-ACACTAAATG---T----------ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-GTA-TTACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-ATTGG-----TG-TCAACAAATACACC-ACTTT-CGCACTG
gi|7 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AACCAAA---TATCAAACTTGGAACCAGGATGATCGG-AGCAATAC-ATATT-ACCGATCTTTTCAC-TCATTT-GTCC-AC-AAATAA---GGTA-CGC---T-G--------------CATT-TTTGG-----TGTTCAACAAATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTTAATTTAAGAAACAGTGGGAAGACATTCGTTCAAATAGAAGCATATGGACAGAATCAGAAAGGTGTAAAAGGTTTCTCGGTTTGCCATTGGAAAAATTGTATAAGAGATACCGTTTTATTTGGCTTTCATTCAGGAATGTTTTTATAAGCAATCAAAACATACCCACCTTCAAGAACACCAGTGAAACTACTATAGTTTATCCCTCATTACTGACACACAATCCCTGAGATTGATTATTACCTATCATCAACAACAAAACACCTGTATATCATTTACCATGGAATTCAAATATTCATCAGGGATTCAATGAGCAGTTGAAGCCAAAAGTGACATTATTACACAAACCTGATATGTTTAGATCCACAAAGACCACTTCTTGTCTGGATG
Unaligned ( gi|8 ): TTGTTGATTTTTAAAAGAAACAGTTGGAAGACATTCGTGCAAATAGAGAGTATATTGATAGAATCAGAAAAAGGTGTAAACATTTCTCGGTTTGCAAGTGGACAATTTTATACCGGTAATAAGAAATACACTTTTT
Unaligned ( gi|9 ): TGTTATTTAAGAACAATGGAGAAAACATTCGTTCAAATAGAAAGCATATGACATAATCAGAAGGTGTAAAAATTCTCTCGGCTTGCCAGGTTTGGAATTTTTTTTATAAGAGAATACGTTTAAA
Unaligned ( gi|10 ): AACATTCTCGCAAATCACGAGAGTATACAAATTTGACTAGAATAGCCCCACCATAAAAATTCCTCTATTACGACACATGAAATTGTTGCAAATTCCCGAGATCTTGATATATTACC
Unaligned ( gi|16 ): GTTACCCTTATGACGCACAACCTGATATTGTTACCACTTCTTGTCTGGATGGGAATGTGTG
Alignments
lowQualScore : 22 1 1 22222222222222 111 1 1 111 11111111111111
lowQualScore : 00 3 7 3 6 6 33333333333333 6 6 111 1 0 5 6 5 5 2 2 2 2 2 2 6 2 22 222 6 55555 55555555555555 2 2 99999 2 6 8
lowQualScore : .. . . . . . .............. . . ... . . . . . . . . . . . . . . .. ... . ..... .............. . . ..... . . .
lowQualScore : 00 3 3 3 7 7 33333333333333 7 7 777 4 7 7 7 7 7 0 4 1 1 1 1 3 1 99 111 3 99999 22222222222222 0 0 88888 1 7 0
consensus : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
Reference ( family-3417 ) : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
gi|1 : GCGCGACCAGGCCAATCGAATGTCATT-GCATT-ATAA--CCA-TGGATGTAACCTG-AGCATTT-ACACTAAATG---TT---------------------AA---TGTCACA-TTGGAACCAGAA-GAACGG-AAC--------A-T-ACCTGTC-TTTCAC-TA-TTT-GTTT-AC-AA--AAC--TGTA-CGC---T-GCTTGGTCTTTATACCA-T-TGTGG-----TA-TCAACAAATACACT-TATTT-CGCGCTG
gi|11 : gttaattaaagaaaagtcggaagagacattcgtgcaaatagagagtatattgatagaatcagaattatttcctcattatgacacataattttaaatattacctatcatcaaacagtaaacacctgtcatatcattcaccattgaattcaaatattcatcagggtatttaatgaagccctgaatccaaaagtgacacttattacacataacctgatgtattgttagatctcacaaagaccacttcttgtctagatgggaatgtttgcagtttaatgagtcagtcctgtacaaaagtgttagatgA-TTGGAAGCAGAA-GAACGG-AAC-ATAC-ATATT-GCCTGTC-TTTCAC-TC-TTT-GTTC-ACAAA--AA---TGTA-CGC---T-G--------------C-----TTGG-----T
gi|12 : gc-G--------------TA-T-TTTTT-----TG-TCAACAAATACACT-TCTTT-ctgtataccgttttgatgcca
gi|13 : gtgcaaatagagagtatattgataaaatgaggtgtaaaagtttctcgggttgttttatggg-ACCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACTGTCTTTGCGCACTG
gi|14 : C-ATAC-ATG-T-ACCTGTC--TTCACTTC-TTTCGTCC-AC-AA--AAAGTTGTA-AGTAAAT-GGCC-----------CA-TCTTTGG-----TG-TCAg
gi|15 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGGA-G
gi|17 : -ACTCGTC-TTTCAC-TC-ATT-GT-C-A--AA--AA---TGTA-CGCT--T-G--------------CA-T-TTTGGGGGGTTG-TCAACAA
gi|18 : CCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACT-
gi|19 : -ACCTGTC-TTTCAC-TC-TT--GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGGGC---TG-TCAACAA
gi|20 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|21 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|22 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|23 : A-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTG-CAC-----G--------------C--T-TTTGG-----TG-TCAACAA
gi|24 : -T-ACCTGTC-TTTCAC-TC-TTT-GTC--AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTCGG-----TG-T-AACAAA
gi|25 : -ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTT-G-----TG-TCAACAA
gi|26 : -T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------TA---TTTGG-----TG-TCAAC
gi|27 : -TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTATTGC---T-G--------------CA-T-TGTGGT----TG-TCA
gi|3 : GTGAGATCAGGCCGGTCGAATG
gi|4 : atattcgtgcaaatagagggtacatatacctatattgatagaatcaaaattaaatttcctcattatgacacataattgtaaatccctgagattgattattacctctcatcaagcaataaacacctgtcatatcatttataacattttgtatcccaaagtgacacttattacacataacctgatgttagaaaccacttcttgtctagatgccaatagatggcaatgtttgcagtttaatgagtcagtcttgtacaaaagtgtaagatgGCGAGATCAGGTCGATCAAATGTCATATGCATTAATAATATCATTGCATGTAACCTGAAATAGGCAACACTAAATATGTTTTATATATAAACTATCAAA-CAAAAATTATCAAATTTGGAA-CAGAA-GAACGGAAAC-ATACGATATT-ACCTGTC-TTTCAT-TC-TTT-GT-C-AC-AA--AA---TGTA-CGC-----G--------------CA---TTTGG-----TG-TCAATAAATat
gi|5 : cccttatgacgcacaacctgtattgttacccttcttgtactggatgggaatgtgtggcatttaagtcttgtacaaaagtgttagctgGCGAGATCAGGTCGGTCGAATGTCATA--CATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TT-ATAT----ACTATC-AA-CACA---TATCACA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACC-TCTTT-CGCACTGt
gi|6 : GCATGTATCCTG-AATAGGC-ACACTAAATG---T----------ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-GTA-TTACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-ATTGG-----TG-TCAACAAATACACC-ACTTT-CGCACTG
gi|7 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AACCAAA---TATCAAACTTGGAACCAGGATGATCGG-AGCAATAC-ATATT-ACCGATCTTTTCAC-TCATTT-GTCC-AC-AAATAA---GGTA-CGC---T-G--------------CATT-TTTGG-----TGTTCAACAAATA
blockSeqs : TG A T T A A TGTTTTATATATAA A C AAT T T A A G T T T T A C C A AT AGT T AAAT GCC T C GGGGT T G G
blockSeqs : . . T . . . TTTATAT . . . C . . . . T . . . . . C . . A T TG . . . GC . . .
blockSeqs : . . TTTATAT . . . . . . . . T . . . . . C . . A T TT . . . T . . .
blockSeqs : . . TTATAT . . . . . . . . . . . . . . . . . A . TG . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : TTTATAT******* *** **************
originalCons : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
finalCons : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATGTTTATAT-------ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTTAATTTAAGAAACAGTGGGAAGACATTCGTTCAAATAGAAGCATATGGACAGAATCAGAAAGGTGTAAAAGGTTTCTCGGTTTGCCATTGGAAAAATTGTATAAGAGATACCGTTTTATTTGGCTTTCATTCAGGAATGTTTTTATAAGCAATCAAAACATACCCACCTTCAAGAACACCAGTGAAACTACTATAGTTTATCCCTCATTACTGACACACAATCCCTGAGATTGATTATTACCTATCATCAACAACAAAACACCTGTATATCATTTACCATGGAATTCAAATATTCATCAGGGATTCAATGAGCAGTTGAAGCCAAAAGTGACATTATTACACAAACCTGATATGTTTAGATCCACAAAGACCACTTCTTGTCTGGATG
Unaligned ( gi|8 ): TTGTTGATTTTTAAAAGAAACAGTTGGAAGACATTCGTGCAAATAGAGAGTATATTGATAGAATCAGAAAAAGGTGTAAACATTTCTCGGTTTGCAAGTGGACAATTTTATACCGGTAATAAGAAATACACTTTTT
Unaligned ( gi|9 ): TGTTATTTAAGAACAATGGAGAAAACATTCGTTCAAATAGAAAGCATATGACATAATCAGAAGGTGTAAAAATTCTCTCGGCTTGCCAGGTTTGGAATTTTTTTTATAAGAGAATACGTTTAAA
Unaligned ( gi|10 ): AACATTCTCGCAAATCACGAGAGTATACAAATTTGACTAGAATAGCCCCACCATAAAAATTCCTCTATTACGACACATGAAATTGTTGCAAATTCCCGAGATCTTGATATATTACC
Unaligned ( gi|16 ): GTTACCCTTATGACGCACAACCTGATATTGTTACCACTTCTTGTCTGGATGGGAATGTGTG
Alignments
lowQualScore : 22 1 1 22222222222222 111 1 1 111 11111111111111
lowQualScore : 00 3 7 3 6 6 33333333333333 6 6 111 1 0 5 6 5 5 2 2 2 2 2 2 6 2 22 222 6 55555 55555555555555 2 2 99999 2 6 8
lowQualScore : .. . . . . . .............. . . ... . . . . . . . . . . . . . . .. ... . ..... .............. . . ..... . . .
lowQualScore : 00 3 3 3 7 7 33333333333333 7 7 777 4 7 7 7 7 7 0 4 1 1 1 1 3 1 99 111 3 99999 22222222222222 0 0 88888 1 7 0
consensus : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
Reference ( family-3417 ) : GCGAGATCAGGCCGGTCGAATGTCATA-GCATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACT-TCTTT-CGCACTG
gi|1 : GCGCGACCAGGCCAATCGAATGTCATT-GCATT-ATAA--CCA-TGGATGTAACCTG-AGCATTT-ACACTAAATG---TT---------------------AA---TGTCACA-TTGGAACCAGAA-GAACGG-AAC--------A-T-ACCTGTC-TTTCAC-TA-TTT-GTTT-AC-AA--AAC--TGTA-CGC---T-GCTTGGTCTTTATACCA-T-TGTGG-----TA-TCAACAAATACACT-TATTT-CGCGCTG
gi|11 : gttaattaaagaaaagtcggaagagacattcgtgcaaatagagagtatattgatagaatcagaattatttcctcattatgacacataattttaaatattacctatcatcaaacagtaaacacctgtcatatcattcaccattgaattcaaatattcatcagggtatttaatgaagccctgaatccaaaagtgacacttattacacataacctgatgtattgttagatctcacaaagaccacttcttgtctagatgggaatgtttgcagtttaatgagtcagtcctgtacaaaagtgttagatgA-TTGGAAGCAGAA-GAACGG-AAC-ATAC-ATATT-GCCTGTC-TTTCAC-TC-TTT-GTTC-ACAAA--AA---TGTA-CGC---T-G--------------C-----TTGG-----T
gi|12 : gc-G--------------TA-T-TTTTT-----TG-TCAACAAATACACT-TCTTT-ctgtataccgttttgatgcca
gi|13 : gtgcaaatagagagtatattgataaaatgaggtgtaaaagtttctcgggttgttttatggg-ACCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACTGTCTTTGCGCACTG
gi|14 : C-ATAC-ATG-T-ACCTGTC--TTCACTTC-TTTCGTCC-AC-AA--AAAGTTGTA-AGTAAAT-GGCC-----------CA-TCTTTGG-----TG-TCAg
gi|15 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGGA-G
gi|17 : -ACTCGTC-TTTCAC-TC-ATT-GT-C-A--AA--AA---TGTA-CGCT--T-G--------------CA-T-TTTGGGGGGTTG-TCAACAA
gi|18 : CCTGTC-TTTCAC-T--TTT-GTCC-AC--A--AA---TGTATCGC---TGG--------------CA-T-TTTGG-----TG-T-AAC-AATACACT-
gi|19 : -ACCTGTC-TTTCAC-TC-TT--GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGGGC---TG-TCAACAA
gi|20 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|21 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|22 : -ACCTGTC-TTTCAC-TC-TTT-GTCCCAC-AA--AAA--TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACA
gi|23 : A-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTG-CAC-----G--------------C--T-TTTGG-----TG-TCAACAA
gi|24 : -T-ACCTGTC-TTTCAC-TC-TTT-GTC--AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTCGG-----TG-T-AACAAA
gi|25 : -ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTT-G-----TG-TCAACAA
gi|26 : -T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------TA---TTTGG-----TG-TCAAC
gi|27 : -TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTATTGC---T-G--------------CA-T-TGTGGT----TG-TCA
gi|3 : GTGAGATCAGGCCGGTCGAATG
gi|4 : atattcgtgcaaatagagggtacatatacctatattgatagaatcaaaattaaatttcctcattatgacacataattgtaaatccctgagattgattattacctctcatcaagcaataaacacctgtcatatcatttataacattttgtatcccaaagtgacacttattacacataacctgatgttagaaaccacttcttgtctagatgccaatagatggcaatgtttgcagtttaatgagtcagtcttgtacaaaagtgtaagatgGCGAGATCAGGTCGATCAAATGTCATATGCATTAATAATATCATTGCATGTAACCTGAAATAGGCAACACTAAATATGTTTTATATATAAACTATCAAA-CAAAAATTATCAAATTTGGAA-CAGAA-GAACGGAAAC-ATACGATATT-ACCTGTC-TTTCAT-TC-TTT-GT-C-AC-AA--AA---TGTA-CGC-----G--------------CA---TTTGG-----TG-TCAATAAATat
gi|5 : cccttatgacgcacaacctgtattgttacccttcttgtactggatgggaatgtgtggcatttaagtcttgtacaaaagtgttagctgGCGAGATCAGGTCGGTCGAATGTCATA--CATT-ATAATACCA-TGCATGTAACCTG-AATAGGC-ACACTAAATG---TT-ATAT----ACTATC-AA-CACA---TATCACA-TTGGAACCAGAA-GAACGG-AAC-ATAC-ATA-T-ACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-TTTGG-----TG-TCAACAAATACACC-TCTTT-CGCACTGt
gi|6 : GCATGTATCCTG-AATAGGC-ACACTAAATG---T----------ACTATC-AA-CAAA---TATCAAA-TTGGAACCAGAA-GAACGG-AAC-ATAC-GTA-TTACCTGTC-TTTCAC-TC-TTT-GTCC-AC-AA--AA---TGTA-CGC---T-G--------------CA-T-ATTGG-----TG-TCAACAAATACACC-ACTTT-CGCACTG
gi|7 : GCATGTAACCTG-AATAGGC-AGACTAAATG---TTTATAT----ACTATC-AACCAAA---TATCAAACTTGGAACCAGGATGATCGG-AGCAATAC-ATATT-ACCGATCTTTTCAC-TCATTT-GTCC-AC-AAATAA---GGTA-CGC---T-G--------------CATT-TTTGG-----TGTTCAACAAATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTTAATTTAAGAAACAGTGGGAAGACATTCGTTCAAATAGAAGCATATGGACAGAATCAGAAAGGTGTAAAAGGTTTCTCGGTTTGCCATTGGAAAAATTGTATAAGAGATACCGTTTTATTTGGCTTTCATTCAGGAATGTTTTTATAAGCAATCAAAACATACCCACCTTCAAGAACACCAGTGAAACTACTATAGTTTATCCCTCATTACTGACACACAATCCCTGAGATTGATTATTACCTATCATCAACAACAAAACACCTGTATATCATTTACCATGGAATTCAAATATTCATCAGGGATTCAATGAGCAGTTGAAGCCAAAAGTGACATTATTACACAAACCTGATATGTTTAGATCCACAAAGACCACTTCTTGTCTGGATG
Unaligned ( gi|8 ): TTGTTGATTTTTAAAAGAAACAGTTGGAAGACATTCGTGCAAATAGAGAGTATATTGATAGAATCAGAAAAAGGTGTAAACATTTCTCGGTTTGCAAGTGGACAATTTTATACCGGTAATAAGAAATACACTTTTT
Unaligned ( gi|9 ): TGTTATTTAAGAACAATGGAGAAAACATTCGTTCAAATAGAAAGCATATGACATAATCAGAAGGTGTAAAAATTCTCTCGGCTTGCCAGGTTTGGAATTTTTTTTATAAGAGAATACGTTTAAA
Unaligned ( gi|10 ): AACATTCTCGCAAATCACGAGAGTATACAAATTTGACTAGAATAGCCCCACCATAAAAATTCCTCTATTACGACACATGAAATTGTTGCAAATTCCCGAGATCTTGATATATTACC
Unaligned ( gi|16 ): GTTACCCTTATGACGCACAACCTGATATTGTTACCACTTCTTGTCTGGATGGGAATGTGTG