lowQualScore : 11111111111111111111 1111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 111111111 111111 22222222222222222222222 33333333333333333333333333333333 1111111111111111111111111111111111 11111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 4 777777 1 2 11 2222 1 555555555555555 11 222 1 2 2 55555 2 22222222222222222222 2 1 22 4 2 2 2 4 2222 444 2222 22 5555555 2 444444 4 33 6666 2 1 11 33 4444444 33 1 5555555555555555555555555555555555555 2 2 1 33333333333 2 4 2 22 1 555555 1 22 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 333 33 1 444 0000000 666666666 000000 00000000000000000000000 1 8888 44 1 2222222222222222222222222 77777777777777777777777777777777 33 444444 22 2222222222222222222222222222222222 333333 666666 1 11111111111111111111111111111111111 222 1 11 5555555555555555555555555555 1 666666666666666666666666666666666666666666666666666666 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 88 0 333333 3 6 1 7 88 7777 3 444444444444444 11 6 333 3 0 0 5555 2 22222 0 4 77777777777777777777 0 0 77 0 3 0 0 0 0 8888 666 9999 77 3 2222222 0 111111 6 6 0 00 6 1111 0 7 88 22 0000000 3 11 2 5 2 4 1111111111111111111111111111111111111 0 0 5 99999999999 3 0 0 77 5 777777 2 4 5 3 77 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 222 11 5 111 9999999 000000000 6 777777 44444444444444444444444 7 5555 6 66 6 6 5 6 6 6 5555555555555555555555555 22222222222222222222222222222222 2 00 333333 77 5555555555555555555555555555555555 0 0 6 1 7 1 888888 3 888888 7 3 55555555555555555555555555555555555 555 3 99 00 8 0 2222222222222222222222222222 1 5 000000000000000000000000000000000000000000000000000000 22 9 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : .. . ...... . . . . .. .... . ............... .. . ... . . . .... . ..... . . .................... . . .. . . . . . . .... ... .... .. . ....... . ...... . . . .. . .... . . .. .. ....... . .. . . . . ..................................... . . . ........... . . . .. . ...... . . . . .. . ................................................................................................................................................................ . ... .. . ... ....... ......... . ...... ....................... . .... . .. . . . . . . ......................... ................................ . .. ...... .. .................................. . . . . . . ...... . ...... . . ................................... ... . .. .. . . ............................ . . ...................................................... .. . . .......................................................................................................................................................................................................................................................................................................................
lowQualScore : 33 0 333333 3 7 0 3 33 7777 3 000000000000000 00 7 333 3 0 0 5555 5 55555 0 0 55555555555555555555 0 5 55 0 0 0 0 0 0 0000 000 5555 55 0 0000000 0 000000 0 0 0 00 0 0000 0 0 55 55 0000000 0 00 5 5 5 0 5555555555555555555555555555555555555 0 0 5 00000000000 0 0 0 55 0 555555 5 0 0 0 55 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 555 55 5 555 0000000 000000000 0 000000 00000000000000000000000 0 0000 0 00 0 0 0 0 0 0 0000000000000000000000000 55555555555555555555555555555555 5 55 000000 55 3333333333333333333333333333333333 7 7 0 0 7 0 333333 7 000000 0 3 33333333333333333333333333333333333 000 3 22 77 7 1 7777777777777777777777777777 4 7 777777777777777777777777777777777777777777777777777777 33 6 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
consensus : AGGGCTAT--TCCA-GAAAAA--AAC-GTCTCCTG-GGGGCAGAACGCCCATGA--ATTTT-A--GGG-TACCAC-CAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTCTGGATAANCNNCNCCCAAACCACCGAACAAANTAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTANCTCGAAGCATTTGCTTGTTNTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAGGATCAGCCGGCAAATAAAAGACACCAAAAATCATCCAACTTNCATAATCTTATTTTCAGCAAATTTTAAAAAATCGGTGTTGGCGGATCCGCAA-CCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGGTTTTTNAAAATTATCATATCNTTTTTNTCATNGGTGGCTNGTCATTCAGTTNTTNTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGACTCATATTTAATGCTGCTGTGTTGTTTTTAGTTGGAATTGTTCCGAAAAGGTCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCTGCTGGCATGCTGNCGAGTTCNTTGTTGCTAGTNATCCAGTTCGANGCGAGAACAGTACACGACATAGTAAACACCCTACTGTANNAAATCCGTGGAGACTCAACACCNTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCACGAAGTAGTGTGTGTAAATTTGCCAAATTACGCATAGATGGGACCGCGACAGACCCAACTTCCAAAGGGAACCCGCCCGCANCCCCCAGGCACACGAAATATCAGAAATAAA--ATT--TACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTTA----TCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTCTT----TCTCTCAAAATTTTC-AGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAAAA-------------------AAGAATCATTNAATTTGAATGAACAACTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACGANTATTTCCCGTGTA------TCCGTATCAAAAACGATGCTTCGTGCCTGTCTAACGCCCGTTCAGT------AGGANAT------AAGCTACAAGATTT-TAT-TGGATTT-TT--GATA---GTT-ACCG-CCTTNAAATAT-G-TT-TACGAG--CGAAG-ATCGAANTATC-G-------AT--------A--------AA-A-TCTAAATTCAA-------------ATA------G---T--GA-GGG-GA-GGGTG-G-GATA-AAAAC-TCCCGTAAGTTTCTGTC-ATNC-GACA-TC-A--TTACAA---CAT-A-ATA-AT---ACATTTT-AATGT-AC---GTT--------C------------G------------TACACTTTCATTTGT-G-A-TAAA----CA--CAGTAGAAAAGGTANAC--GGAGTGCATTTTATTTACA-T-TAT--TTATACTC-G-CA-ATG-G-----TTA-AATGTTA-----C--AATCCTTT-AGTTCCAACATTC-----ATCA-TAGT--T---NNGG---AGGGGGG-GGGTCTCGGTGAAAACTAT--GTGAATTTA------GTTTTTT
Reference ( gi|1 ) : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTG-GGG-CAGAATGCCCATGA--ATTTT-A--GGG-TAAC-C-CAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAGAAACCAAAA-TT-TCTA--TTTCAT----TTATTT-CAGCAAATTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATTAT---AT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-------------ATTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TCGG-CGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------GAAAATCCATAGAGACTCAACACTGTG-----------TCC---------------TCCGTGT--TCC--------ATGAAGT-ATATCTGTA---TTGCCATA-TACACATAGATA--ATC-CG-CAGACCCAACTT-CAAAGGGAACCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT------AGGAGATAA--GAAAGCTACAATATTT-TAT-TGGACTT-TT--GATA-TCGTTTACTGTCTTTTGAATAT-G-TT-TACGAG--CGAAA-ATCAAATTATC-G-------AT--------A--------AA-A-TCTAAATTCAG-------------ATA------G---T--GA-GGG-GA-GGGTGCGTGATAGAAAAT-TCCCGTTAGTTTCTGTC-A-AC-GACA-TC-A--TTGCAA---CATGA-ATA-AT---ATA-TCT-AGTGT-AC---GTT--------C------------G------------TACACTT--GTTTGT-G-A-TAAG----CATGCAGTAGAAAAGGCAAAC--GGAATGCATTTTATTTATATT-TAT--TTATACTC-G-CA-ATG-G-----CTAAAACGTTA-----C--AATCCTCTGAGTTCTAACAGTC-----AT-A-TAGT--T---GAGG---AGGGGGG-GGGTGTCAGTGAAAA------GTGAATTTAGGTGAGGTTTTTT
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTG-GGGGCAGAACACCCATAA--ATTTT-A--GGGGTACCAC-CAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCC-----ACC-AACAAATTAAAAATT------------------T-CACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAG-CACCAAAA-TCATCCA--TTTCAT----T--TTT-CA
gi|3 : AGGGCTAT--TCCA-GAAAAA---ACTGTCTCCTG-GGGGCAGAACGCCCATGAGAATTTT-AAGGGG-TACC-CACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAGA--CCAAAAATT-TCTAACTTGCATAATCTTATTTTCAGCAAATTTTAAAAAATCGGTGTTGGCGGATCCGCAA-CCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGGTTTTTA-AAATTATCATAT-GTTTTTGTCA-TGGTGGCTTG-CATTTAGTTTTTATT-------------ATTATTATT---------------ACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTGTTC-GAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCGA-----GTACA------------------------TCAAAT-CGTA---ATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCATGAAGTAATATGTGTAAATTTGCCAAATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCGCCCGCACCCCCCAGGCAC-CGAAA-ATCAGAAtattttttttaaggttttttaaaattatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|16 : AAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGG-CAGAATGCCC-TGA--ATTTTTG--GGG-TACCAC-CAATA---AATTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATTAT---ATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTCGG-CACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACACGACATAGTAAACACCCTACTGTAGAAAATCCATGGAGACTCAACACCATG-----------TCC---------------TCCGTGT--TCC--------ACGAAGT-GTGT--GTA---TTGC----------------G--ATC-TG-CAGACTCAACTT-CAAAGGGAACC---CTGC-ACCCCCAGGCACATGA--TATCAGAAATAAA--ATT--TACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTTA----TCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTCTT----TCTCTCAAAATTTTC-AGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAAAA------------------------TCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC------AGGAGAT-------AGCTACAATATTT-TAT-TGGACTTGTT--GATA-------------TTCTAAATAT-GTTT-TATGAC--CG-AG-ATCAAATTATCGG-------ATA-------A--------AA-A-TCTAAATTCAA-------------ATA------G---T--GAGGGG-GA-GGGTGTGTGATAAAAAA---CCCGTTAGTTTCTGTCAA-AC-GACA-TC-A--TT--------AT----------------TTT-AGTGT-AC---GTT--------CA-----------G------------TACACTTTCATTTGTAA-A-TAA--------GCAGTAGAAAAGGCAAAT--GGAATGCATTTT
gi|9 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAAGAATCATTAAA--TAAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTAAAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTGTTTACCA-CCTTAAAACAT-T-TTATACAAG--
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT------AGAAAAT------AAGCTACAAGGTTGATATATATATTT-T----------GTTAACCGTC-CTCAAATATGG-TT-TACGAA--CGAGG-ATCAAATTATC-A-------GA--------A--------AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G---TAAGA-AGG-AA-AGGGGT---ATAG-GAAC-TCCCGTTAGTT-----------------TC-A--TTAC-A---C-----ATA-AT---ACATTTT-AGTGCGAT---GTT--------C-------------------------------------TGT-GAA-TAA--------ACAGTGGTAAAGGCAAAC--ATAGTTCATTTTATTTACA-T-TGT--TTATA-TC-GTTA-ATG-G-----CTATAATGTGA-----T--AACCCTTTAA
gi|17 : CGAGATCAAAAGATCGA--TGTC-GG------AT--------A--------AATA-TCTAAATTCAA-------------ATACATGTTG---T--TA-GGGAGA-GGG---G-GATA-AAGAT-TCCCGTAATTCTCTGTC-ATAC-GGCA-cattcgttggttttagggtgaaattatgtgaatagttttgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|5 : GAG--CGAAA--TCAAAGGATC-G-------ACGTTGGATAA--------AA-A-TCTAAATTCAA-------------ATAG-----G---T--AG-GAG-GAGGGGTG-GGGATAT--AATCTCCCGTAAGTTTCTGTC-ATCC-AATA-TCGA--TCACAAAATCATGATGTT-AT---AT--TTT-AATGT-AC---GTT--------TAATAGATTCAAAA------------TACACTTCCATTTGTAA-A-TAAA----C-------AGAAGAGGTATAC--AGAGTGCATTTGATATACATTGTATTATTATAATC-G-C--ATG-T-----TT------TTACTTGTC--AATCC-ATAAGTCTCAACATTCATCGTAT-A-TAGC--TTTAGGGG---AGGGGGGTGGGCCTCGGTGAAAACTAT--GTGAATGTA------GTTTTTTacgatt
gi|15 : GAG--CGAGA--TCAAAACATC-GTTTTCAGAT--------A--------AA-AATCTAAGTTCAA-------------ATA------GTTAT--AA-GGG-GA-GGG---GT-ATA-AAAAC-TCCCATAGGTTCCTGTC-A-tctttcagacattgaacttttgac
gi|6 : attataaagaagtatgataaattatgAAG-ATCGAAGT-TT-G-------AT--------A--------AATA-TCTAAATTCAA-------------ATA------G---T--TAGGGG-GA-GGGTG---GGTA-AAAAC-TCCTGCAAGTTTCTGTC-A-TCTGACAGT-----TTAC-A---CAT-A-ATATAT---ACATTTT-AATGT-ATATAGTTGTTAAATACCA----------G------------TACACTT-------T-G-A-TGAA----TAAACAGTAG---AGGTATAC--AGAGTATATTTTATTTA---C-TA---TTATACTT-G-T--ATGTT-----TTCAAATGTT---------AATCCATT-AGTTTCAACATTC-----ATCACTAGT--T---TTAG---AGGAATG-AGATCTTGGTGAAAACTATATGTGAATTTA------GTTTTTTt
gi|10 : gagagattaaAAG-ATCAAAATATC-A-------AT--------ATCACATCAAA-A-TCTAAA--CAG--------------TA------G---TTGGA-GGG-G----------GATA-AAAAC-CCACATAAAATTCTGTT-G-TCTGACA-TCAA--TTGCAgtcagacattgaacttttgatctcgccccctaag
gi|7 : gggcTGTC-ATCC-AACA-TC-AGATCGCA----CAT-A-ATG-ATCTTACA-TTTTAATGT-AC---ATT--------T------------AATAGTTTTAAAATACACTTTCATTTGT-G-AATAAA----CA----ATAGAAAAGGTATAC--AGAGTGCA-TTTAT---CATT-C-------TACTCTG-C--ATG-GT----TTAAATTGTT---------AATCCTTT-AGTTCCATCTGTC-----ATCA-TA-T--T---AA--------------------AGTGAAAACTAT--ATGAATTTA------GTTTTTTgggatttttttttggaaataaaccaactttttttaaatgttgcatttaaagatatcacatcccttttcatttttaatacactgttgtaaaagtatacagagt
gi|8 : TAT-AC---GTT--------T------------GA-----------TACCTCT--GGTTAT-----TAAATTTTCATTC-GT-GAATAGGTAAATATGGAGTGGATCTTATTCAT----TGT--T---ACTC-A-CGTACA-G------TATAAC--TA-----CTTAATCCT-TCAGTTCCTACATTC-----AT-C-AAAT--T---TAGTTTTAGGGGAG-GGGTCTCGGTGAAAACTCT--GTGAATCTAgttagacattaaacttttgacctcgccc
gi|13 : atacattttgataT--------T------------G------------TACACTTTCATTAAT-G-AATAAA----CAT----TGGTAAAGGAATAC--GGAGTGCATTTTCATTATCAA-TAT--T----CTC-G-TA--TG-GTGTGCCT----TGTTA---------ATCCATT-AGTTCCAACA-TT-----AC-A-GGGGAGT---GTGG---GGGGGGG-GGGattttttgtcagacattgaacttttgatcttgacccctaaa
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|12 ): CATGAACGCGTTTATTTGTGAGTAAGGCAGTAAAGAGGTATATAGAGTGCTGCTAGCAGTTGATATTTAGTCATCGATTCGAAGTTACACTCATCATATCTAGTTTCAAGGGAGAGGGGGCTCTTGATAAAGACTACCAGTATGTGTTAACTTATTTTTTTGAAAAGTTAATCGATCTTACCCCTTA
Unaligned ( gi|14 ): GTACGATTTGATAGTTTTAAATTGTACACTTTTCATTAATGAATAAAACATTGGTATAAAGGAATATCGGAGTGCATGTGCGATTATTAATTGATCCGTATTGGTGGTTTTTCTTAGTCCTTGTTATTCCATTAGTTCC
Unaligned ( gi|18 ): AACAATCATGATATTCCAAAGGGCCAGGGGGTGTCTTGATGAAAACTATGTGAATTTAGTTTTATTGTTCAGAAATGACATTTTGATTTTACCCCT
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222 111111111111111111111111111111
lowQualScore : 11 1 111111 1111 22 111 1 11 111 1 2 2 33 1111 555555555 2 1111 2 2 2 2222 33 22 33 44444444 222 1 1 2 1 1 2 1 4444444 1 9999999999999999999999999999999999999 2 2 333333333333 1 1 33 555555 333 44444 6666666666666666666666666666666 1 444444444444444444444444444444444444444444444444444444 22 333 22222 4444444444 11 22 111 33333333 333333333 22222 3333333 4444 1 4444 2 2222222222222222222222222 666666666666666666666666666666 2222 888888888888888888888888888888888888 222222 5555555 1 111 66666666666666666666666666 111111 33333333333333333 1 2222222222222 222222222222222 33333333 1111 55555555555555555555 1111 5555555555555555555555 111111111 22222222222222222 1111 444444444444444444444444 111 3333333333 22222222 222222 111111
lowQualScore : 33 0 777777 2 3 4444 33 9 666 0 66 777 0 3 3 1 22 1 00 9999 1 222222222 7 3 1 6666 7 1 3 3 3 7 6666 00 7 77 0 00 1 77777777 7 333 5 5 0 55 5 5 3 7 4 3333333 1 4 1 7 1 5555555555555555555555555555555555555 3 3 7 333333333333 7 2 6 6 00 0 6 777777 1 1 1 111 1 33333 3333333333333333333333333333333 6 0 0 000000000000000000000000000000000000000000000000000000 77 0 777 77777 3 7777777777 33 6 11 7 888 22222222 888888888 66666 3333333 2222 5 66 4 2222 0 3 5555555555555555555555555 222222222222222222222222222222 1 7 5555 0 7 6 888888888888888888888888888888888888 88 888888 1 3333333 2 0 333 22222222222222222222222222 44 555555 2 2 5 33333333333333333 66 0 5 7777777777777 333333333333333 5 11111111 5 0 44 5 3333 4 77777777777777777777 5 888 66 0000 5 5 66 55 9999999999999999999999 3 333333333 66 1 666 77777777777777777 4 999 1 3 55 99999 55 0000 55 888 5 555555555555555555555555 999 0 55 0 4 0000000000 1 22222222 2 777 0 4 55 2 111111 66 444444
lowQualScore : .. . ...... . . .... .. . ... . .. ... . . . . .. . .. .... . ......... . . . .... . . . . . . .... .. . .. . .. . ........ . ... . . . .. . . . . . ....... . . . . . ..................................... . . . ............ . . . . .. . . ...... . . . ... . ..... ............................... . . . ...................................................... .. . ... ..... . .......... .. . .. . ... ........ ......... ..... ....... .... . .. . .... . . ......................... .............................. . . .... . . . .................................... .. ...... . ....... . . ... .......................... .. ...... . . . ................. .. . . ............. ............... . ........ . . .. . .... . .................... . ... .. .... . . .. .. ...................... . ......... .. . ... ................. . ... . . .. ..... .. .... .. ... . ........................ ... . .. . . .......... . ........ . ... . . .. . ...... .. ......
lowQualScore : 88 0 888888 5 2 8888 88 2 555 0 00 555 0 7 7 0 00 0 77 0000 0 333333333 3 3 0 7777 3 0 3 3 3 3 7777 33 3 33 7 33 0 77777777 3 333 5 5 0 00 5 0 7 3 0 7777777 0 0 0 3 0 0000000000000000000000000000000000000 3 7 3 333333333333 3 0 7 7 33 7 7 333333 0 0 0 000 0 00000 0000000000000000000000000000000 0 7 0 222222222222222222222222222222222222222222222222222222 77 7 777 77777 7 3333333333 33 7 33 3 777 00000000 000000000 55555 0000000 5555 5 55 0 5555 0 0 0000000000000000000000000 000000000000000000000000000000 0 3 0000 7 3 7 888888888888888888888888888888888888 55 888888 0 2222222 5 0 555 88888888888888888888888888 66 666666 0 8 0 44444444444444444 99 0 0 5555555555555 000000000000000 0 11111111 0 8 88 0 7777 4 00000000000000000000 0 888 99 6666 0 0 99 55 2222222222222222222222 6 555555555 44 2 222 88888888888888888 1 888 0 6 00 44444 11 6666 44 222 0 888888888888888888888888 000 8 11 2 4 8888888888 1 33333333 4 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--A-TTTTAG-GGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC--ACCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGAAGCATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG--ACCAAAAATC-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATTAT---AT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTATT-----------TTATTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GTTG-GAATTGTTTCGAAAAGGTCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACACGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CACCNTG--GT------GTCC---------------TCCGTGT-CTCCGTG-----ACGAAGTA-TATGTGTA---TTGCCA-A-TACGCATAGAT--GACCGCG-CAGACCCAACTTCCAAAGGGAACCCGCCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGAGAAAGAAATCA--------TCACGATTAT------TGT------ATCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT------AGGAGATAA----AAGCTACAANATTT-TAT-TGGACTT-TTGA------TA--G-TT-ACCG-CCTTNAAATAT-G-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-T-A--CGT--TT----G------------T---A-CAC------T--TT-CATTTGT-G-A-TAAA----C--A--CAGTAG-A-AAAGGTATA-C--GGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G--CA-ATGG-T-----T--A-AA-TGTTACAATCCTTT-AGTTCCAACATT-CATC----A----TAGTT--TN---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAC-GTCTCCTGGGGGCAGAACGCCCATGA--A-TTTTA--GGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTCTGGATAANCNNCNCCCAAACCACCGAACAAANTAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTANCTCGAAGCATTTGCTTGTTNTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAGGATCAGCCGGCAAATAAAAGACACCAAAAATCATCCAACTTNCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAA-CCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGGTTTTTNAAAATTATCATATCNTTTTTNTCATNGGTGGCTNGTCATTCAGTTNTTNTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGACTCATATTTAATGCTGCTGTGTTGTTTTTAGTTG-GAATTGTTCCGAAAAGGTCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCTGCTGGCATGCTGNCGAGTTCNTTGTTGCTAGTNATCCAGTTCGANGCGAGAACAGTACACGACATAGTA----AACACCCTACTGTA-NNAAATCCGTGGAGACTCAA-CACCNTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCACGAAGTAGTGTGTGTAAATTTGCCAAATTACGCATAGATGGGACCGCGACAGACCCAACTTCCAAAGGGAACCCGCCCGCANCCCCCAGGCACACGAAATATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAAA-------------------AAAGAATCATTNAATTTGAATGAACAACTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACGANTATTTCCCGTGT------ATCCGTATCAAAAACGATGCTTCGTGCCTGTCTAACGCCCGTTCAGT------AGGANAT------AAGCTACAAGATTT-TAT-TGGATTT-TTGA------TA--G-TT-ACCG-CCTTNAAATAT-G-TT-TACGAGCGAAGATCGAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATNCGACA-TC-A--TTACA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-T-A--CGT--TC----G------------T---A-CAC------T--TT-CATTTGT-G-A-TAAA----C--A--CAGTAG-A-AAAGGTANA-C--GGAGTGCATTTTATTTACA-TTAT----TTATA--CTC-G--CA-ATGG-T-----T--A-AA-TGTTACAATCCTTT-AGTTCCAACATT-CATC----A----TAGTT--NN---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--A-TTTTA--GGGTAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAGAAACCAAAATT--TCTA--TTTCAT----T---TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATTAT---AT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-------------ATTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT---GAATTGTTTTGAAAAG-TCGG-CGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA-GA----------------------------AAATCCATAGAGACTCAA-CACTGTG-----------TCC---------------TCCGTGT--TCC--------ATGAAGTA-TATCTGTA---TTGCCATA-TACACATAGAT--AATC-CG-CAGACCCAACTT-CAAAGGGAACCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCC---------CACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACA-------TTTTAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAAC--AGAAAGAAA-----------TCACGATTA-------TGT------ATCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT------AGGAGATAAGA--AAGCTACAATATTT-TAT-TGGACTT-TTGA------TATCGTTT-ACTGTCTTTTGAATAT-G-TT-TACGAGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------G-T---GA-GGG-GAGGG-TGCGTG-ATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACA-TC-A--TTGCA-A---CATG----------AATA-AT---ATA---TCT----AGTG-T-A--CGT--TC----G------------T---A-CAC------T--T---GTTTGT-G-A-TAAG----C--ATGCAGTAG-A-AAAGGCAAA-C--GGAATGCATTTTATTTATATTTAT----TTATA--CTC-G--CA-ATGG-C-----TA-A-AA-CGTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTT--GA---GGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------G-T---AG-TTG-GAGGG----G-G-ATA-AAAACCCACATAAAATTCTGTTGTCTGACA-TCAA--TTGCAGG---GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTT-G--CAT--TTAAAGA------------T---ATCACATCCCTT--TT-CATTTTT-A-A-T--A----C--A--CTGTTG-T-AAAAGTATA-C--AGAGT
gi|12 : gggc---A-CGC------G--TT-TATTTGT-G-A-GTAA----G--G--CAGTA--A-AGAGGTATA-T--AGAGTGC----TGCTAGCA---GT----TGATA--TTT-AGTCA-TCGA-T-----T--C-GA-AGTTACA---CT--------CATCAT---ATC---------TAGTTTCAA---GGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : catga--TT----G------------T---A-CAC------T--TT-CATTAAT-G-AATAAA----C--A--T--TGG-T-AAAGGAATA-C--GGAGTGCATTTT-----CA-TTAT----CAATATTCTC-G--TA--TGG-TGTGCCT-------TGTTA--ATCCATT-AGTTCCAACATTACAGG----G----GAGTG--TG---GGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatttgtacgtttgatagttttaaa--TT----G------------T---A-CAC------T--TTTCATTAAT-G-AATAAA-------A--CATTGGTATAAAGGAATATC--GGAGTGCAT
gi|15 : gtacgatttgatagttttaaaTAAATTAT-G-------GAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------G-TTATAA-GGG-GAGGG----G-T-ATA-AAAACTCCCATAGGTTCCTGTCATgtgcgattattaattgatccgtattggtggtttttcttagtccttgttattccattagttcc
gi|16 : attataaagaagtatgaAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTTG--GGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AAGATCGA--TGTC-GG------AT--------A--AATA-TCTAAAT-------------TCAAATACATGTTG-T---TA-GGGAGAGGG----G-G-ATA-AAGATTCCCGTAATTCTCTGTCATACGGCA-
gi|18 : cgagatcaaAACAAT-CATG----A----TA-TT--CC---AAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--A-TTTTAG-GGGTACCACC-A-ATACA-TTTAAATAAAAAAATACA-CCCTACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCC--ACC----AACAAATTAAAAA-------------------TTTCACGAGTTT-TAACTC--AACATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC--GAAAATAAAAG-CACC-AAAATCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATTAT---ATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT--------TTGTGAATTGTTTCGAAAAGGTC-GGCACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACACGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CACCATGttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|2 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAA-CACCCTACTGTAG-AAAATCCATGGAGACTCAA-CACC-ATGTCCTCCGTGTT-CCACGAAGT---GTGTGTA---TTGC-------------GAT----CTGC---AGACTCAACTTC-AAAGGGAACCC---TGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAAA-------------------A-----TCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GT------ATTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC------AGGAGAT-------AGCTACAATATTT-TAT-TGGACTTGTTGA------TA----TT-------CT--AAATAT-GTTT-TATGACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GAGGGG-GAGGG-TGTGTG-ATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACA-TC-A--TT----------------------------------A--TTTT----AGTG-T-A--CGT--TCA---G------------T---A-CAC------T--TT-CATTTGTAA-A-TAA--------G--CAGTAG-A-AAAGGCAAA-T--GGAATGCATTTTtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcatattttttttaaggttttttaaaattatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAA-TTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG--ACCAAAAATT-TCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAA-CCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGGTTTTT-AAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAGTTTTTA-------------TTATTATTAT---------------TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTG-AAATTGTT-CGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAAATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCC----GT------GTCC---------------TCCGTGT-TTCCATG--------AAGTAATATGTGTAAATTTGCCAAATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCGCCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : ------ATCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT------AGAAAAT------AAGCTACAAGGTTGATATATATATTT-T-------------G-TTAACCG-TCCTCAAATATGG-TT-TACGAACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G-TAA-GA-AGG-AAAGG--G-G-T-ATA-GGAACTCCCGTTAGTT---------------TC-A--TTAC--A---C--------------ATA-AT---ACA--TTTT----AGTG-CGA--TGT--TC------------------------------------------TGT-GAA-TAA--------A--CAGTGG-T-AAAGGCAAA-C--ATAGTTCATTTTATTTACA-TTGT----TTATA---TC-GT-TA-ATGG-C-----T--ATAA-TGTGATAACCCTTT-------AACATT-CGT----------TGGTT--TT---AG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : GAGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGT---AG-GAG-GAGGGGTG-G-GGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATA-TCGA--TCACA-AAATCAT-----------GATG-TT---ATA--TTTT----AATG-T-A--CGT--TT----AATAGATTCAAAAT---A-CAC------T--TC-CATTTGT-A-AATAAA----C--A-------G-A-AGAGGTATA-C--AGAGTGCATTTGATATACA-TTGTATTATTATA--ATC-G--CA--TGT-T-----TTTA-CT-TGT--CAATCCATA-AGTCTCAACATT-CATCGTATA----TAGCT--TTAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------G-T---TAGGGG-GAGGG-TG-G-G--TA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT-----TTAC--A---CAT-----------AATATAT---ACA--TTTT----AATG-T-A--TATAGTT----G------------TTAAA-TAC------CAGTA-CACTT-T-G-A-TGAA----TAAA--CAGTAG-----AGGTATA-C--AGAGTATATTTTATTTAC---TA-----TTATA--CTT-G--T--ATGT-T-----TTCA-AA-TGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTT--TT---AGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACA-TC-AGATCGCA-----CAT-----------AATG-ATCTTACA--TTTT----AATG-T-A--CAT--TT----AATAGTTTTAAAAT---A-CAC------T--TT-CATTTGT-G-AATAAA----C--A----ATAG-A-AAAGGTATA-C--AGAGTGCATTT-------A-TCAT----TC-TA--CTCTG--C--ATGGTT-----T--A-AATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA-TT--AA------------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-T-ATACGT--TT----G----------------A-TAC------C--TC-TGGTTAT-----TAAATTTTC--ATTC-GT-G-A-ATAGGTAAA-TATGGAGTGGATCTTATT--CA-TTGT----T---A--CTC-A--CGTACAG-TA----T--A-AC-TACT-TAATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTT--TT-----AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-----ACTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTAAAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTG--T-TT-ACCA-CCTTAAAACAT-T-TTATACAAGgtcagacattgaacttttgatcttgacccctaaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 11 1 11 1 11 1 11 1 111 1 1 1 222 111 4444444 1 33 1 1 1 1 1 2222 11 11 44444444 222 1 1 1 1 1 1 222 1 11111 777777777777 333333 222 1 1 11 33 1 2 11 333333 111 444444 999999999999999999999999999999 1 666 2 44444 22 222 444444444444444444444444 1 11 11 11 111 11 111 333333333 22222 444444444444 1 2222 1 2222222222222222222222222 777777777777777777777777777777 1111 33 55555555555555555555555555555555555555 2222 55555555555 1 111 1 66666666666666666666 111111 44444444444444444 1 2222222222222 222222222222222 33333333 1111 55555555555555555555 1111 666666666666666666666666666666666666666666666666 222222222222222 111 11111111111111 444444444444444444444444 111 3333333333 222222222 222222 111111
lowQualScore : 33 0 33 0 2 3 33 0 2 9 3 33 0 33 2 777 0 3 3 555 888 6666666 7 3 1 00 7 3 3 3 7 3 3 2222 7 7 44 88 33333333 7 333 5 5 5 22 5 5 3 7 7 333 3 6 7 11111 000000000000 444444 555 3 3 7 6 88 00 7 2 3 88 6 888888 999 333333 000000000000000000000000000000 3 000 8 55555 00 333 666666666666666666666666 3 33 33 99 7 888 88 999 888888888 66666 888888888888 5 22 1 4444 5 1 5555555555555555555555555 777777777777777777777777777777 7 5555 00 99999999999999999999999999999999999999 1 1111 22222222222 1 0 333 6 0 33333333333333333333 44 555555 1 5 44444444444444444 66 0 5 7777777777777 333333333333333 5 11111111 5 0 44 5 3333 4 77777777777777777777 5 888 66 0000 0 5 66 55 222222222222222222222222222222222222222222222222 3 555555555555555 111 2 3 88888888888888 0 888 5 555555555555555555555555 999 0 55 0 4 0000000000 1 000000000 777 0 4 55 2 111111 66 444444
lowQualScore : .. . .. . . . .. . . . . .. . .. . ... . . . ... ... ....... . . . .. . . . . . . . .... . . .. .. ........ . ... . . . .. . . . . . ... . . . ..... ............ ...... ... . . . . .. .. . . . .. . ...... ... ...... .............................. . ... . ..... .. ... ........................ . .. .. .. . ... .. ... ......... ..... ............ . .. . .... . . ......................... .............................. . .... .. ...................................... . .... ........... . . ... . . .................... .. ...... . . ................. .. . . ............. ............... . ........ . . .. . .... . .................... . ... .. .... . . .. .. ................................................ . ............... ... . . .............. . ... . ........................ ... . .. . . .......... . ......... ... . . .. . ...... .. ......
lowQualScore : 88 0 88 0 5 2 88 0 5 2 2 22 0 55 5 555 0 3 3 777 333 7777777 3 3 0 33 3 3 3 3 3 3 3 7777 3 3 00 33 77777777 3 333 5 5 5 00 5 0 3 3 3 333 3 7 3 33333 777777777777 777777 000 3 3 3 7 33 33 3 0 3 33 7 333333 000 000000 777777777777777777777777777777 3 777 7 33333 77 333 777777777777777777777777 3 33 33 33 3 333 55 555 000000000 55555 555555555555 5 00 0 0000 0 0 0000000000000000000000000 777777777777777777777777777777 3 3333 33 88888888888888888888888888888888888888 0 2222 00000000000 0 0 555 5 0 88888888888888888888 66 666666 0 0 66666666666666666 99 0 0 5555555555555 000000000000000 0 11111111 0 8 55 0 7777 0 00000000000000000000 0 888 99 6666 9 0 99 55 555555555555555555555555555555555555555555555555 6 222222222222222 222 0 6 99999999999999 2 222 0 888888888888888888888888 000 8 11 2 4 8888888888 1 111111111 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAAATT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTT-TTT-----------TATTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTCGG-CGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CACC---GTGTCCTCCGTGT-TCC---ACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAACC-GCCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAAC--AGAAAGAA---ATC--------ACGATTA-T------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TTGA------TA----TTACCG-CCTTNAAATAT-G-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G--CA-ATGG-T-----T--A-AA-TGTTACAATCCTTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGAAGCATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAAATC-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTATTT-----------TATTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GTTGGAATTGTTTCGAAAAGGTCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CACCNTGGTGTCCTCCGTGTCTCCGTGACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GACCGCG-CAGACCCAACTTCCAAAGGGAACCCGCCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGAGAAAGAAATCATC--------ACGATTATT------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TTGA------TA--G-TTACCG-CCTTNAAATAT-G-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G--CA-ATGG-T-----T--A-AA-TGTTACAATCCTTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--ATTTTA-GGG-TAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAG-AAACCAAAA-TT-TCTA--TTTCAT--T-----TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATT---ATAT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-------------ATTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TCGG-CGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------------GAAAATCCATAGAGACTCAA-CACT---GTGTCCTCCGTGT-TCCATGA---AGT-ATATCTGTA---TTGCCATA--TACACATAGAT--AATC-CG-CAGACCCAACTTC-AAAGGGAACCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAAC--AGAAAGAA---ATC--------ACGATTA-T------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT----AGGAGA------TAAGAAAGCTACAATATTT-TAT-TGGACTT-TTGA------TATCGTTTACTGTCTTTTGAATAT-G-TT-TACGAGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------G-T---GA-GGG-GAGGG-TGCGTG-ATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACA-TC-A--TTGCA-A---CATG----------AATA-AT---ATA---TCT----AGTG-TA--CGT--TC----G------------T---A-C-------------AC------T--T--GTTTGT-G-A-TAAGC--ATGCAGTAG-A-AAAGGCAAA-CGGAATGCATTTTATTTATATTTAT----TTATA--CTC-G--CA-ATGG-C-----TA-A-AA-CGTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTTG--A---GGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------G-T---AG-TTG-GAGGG----G-G-ATA-AAAACCCACATAAAATTCTGTTGTCTGACA-TCAA--TTGCAGG---GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTTG--CAT--TTAAAGA------------T---ATC-------------ACATCCCTT--TTCATTTTT-A-A-T--AC--A--CTGTTG-T-AAAAGTATA-CAGAGT
gi|12 : gggcT----G------------A---A-C-------------GC------G--TTTATTTGT-G-A-GTAAG--G--CAGTA--A-AGAGGTATA-TAGAGTGC----TGCTAGCA---GT----TGATA--TTT-AGTCA-TCGA-T-----T--C-GA-AGTTACA---CT--------CATCAT---ATC---------TAGTTTCAA---GGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : ca--TT----G------------T---A-C-------------AC------T--TTCATTAAT-G-AATAAAC--A--T--TGG-T-AAAGGAATA-CGGAGTGCATTTT-----CA-TTAT----CAATATTCTC-G--TA--TGG-TGTGCCT-------TGTTA--ATCCATT-AGTTCCAACATTACAGG----G----GAGTGT--G---GGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatttgtacgtttgatagttttaaa--TT----G------------T---A-C-------------ACT-----T--TTCATTAAT-GAA-TAAA---A--CATTGGTATAAAGGAATATCGGAGTGCAT
gi|15 : gtacgatttgatagttttaaaTAAATTAT-G-------GAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------G-TTATAA-GGG-GAGGG----G-T-ATA-AAAACTCCCATAGGTTCCTGTCATgtgcgattattaattgatccgtattggtggtttttcttagtccttgttattccattagttcc
gi|16 : attataaagaagtatgaAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTT-GGGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AGATCAAAAGATC-G-------ATGTCGGAT-A--AATA-TCTAAAT-------------TCAAATACATGTTG-T---TA-GGGAGAGGG----G-G-ATA-AAGATTCCCGTAATTCTCTGTCATACGGCA-
gi|18 : cgAACAAT-CATG----A----TA-TTC--C---AAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--ATTTTA-GGGGTACCACCAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCCA--CCA----ACAAATTAAAAATT-------------------TCACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAGCA--CC-AAAATCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATT---ATATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTCGG-CACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACA-CGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CACCA---TGTCCTCCGTGT-TCC---ACGAAG---TGTGTGTA---TTGC-------------------GATC-TG-CAGACTCAACTT-CAAAGGGAAC---CCTGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAA------------------------AATCATTCAATTTGAATGAACAATTGTAAAAC--AGAAAGAA---ATC--------ACGATTA-T------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC----AGGAGA------T-----AGCTACAATATTT-TAT-TGGACTTGTTGA------TA----TT------CT--AAATAT-GTTT-TATGACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GAGGGG-GAGGG-TGTGTG-ATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACA-TC-A--TT----------------------------------A--TTTT----AGTG-TA--CGT--TCA---G------------T---A-C-------------AC------T--TTCATTTGTAA-A-TAA----G--CAGTAG-A-AAAGGCAAA-TGGAATGCATTTTttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAATTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG-A--CCAAAAATT-TCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGC-AACCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGG-TTTTTAAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAGT-----TTT-----------TATTATTA--------TTAT----TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTG-TTCGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAA-ATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCC--GTGTCCTCCGTGTTTCC---ATGAAGTAATATGTGTAAATTTGCCA-AATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCGCCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT----AGAAAA------T----AAGCTACAAGGTTGATATATATA-TT-TTGT------TA------ACCG-TCCTCAAATATGG-TT-TACGAACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G-TAA-GA-AGG-AAAGG--G-G-T-ATA-GGAACTCCCGTTAGTT---------------TC-A--TTAC--A---C--------------ATA-AT---ACA--TTTT----A--G-TG--CG------------------------------------------AT------G--TTC---TGT-GAA-TAA----A--CAGTGG-T-AAAGGCAAA-CATAGTTCATTTTATTTACA-TTGT----TTATA---TC-GT-TA-ATGG-C-----T--ATAA-TGTGATAACCCTTT-------AACATT-CGT----------TGGTTT--T---AG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : GAGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGT---AG-GAG-GAGGGGTG-G-GGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATA-TCGA--TCACA-AAATCAT-----------GATG-TT---ATA--TTTT----AATG-TA--CGT--TT----AATAGATTCAAAAT---A-C-------------AC------T--TCCATTTGT-A-AATAAAC--A-------G-A-AGAGGTATA-CAGAGTGCATTTGATATACA-TTGTATTATTATA--ATC-G--CA--TGT-T-----TTTA-CT-TGT--CAATCCATA-AGTCTCAACATT-CATCGTATA----TAGCTT--TAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------G-T---TAGGGG-GAGGG-TG-G-G--TA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT-----TTAC--A---CAT-----------AATATAT---ACA--TTTT----AATG-TA--TATAGTT----G------------TTAAA-T-------------AC------CAGTACACTT-T-G-A-TGAATAAA--CAGTAG-----AGGTATA-CAGAGTATATTTTATTTAC---TA-----TTATA--CTT-G--T--ATGT-T-----TTCA-AA-TGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTTT--T---AGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACA-TC-AGATCGCA-----CAT-----------AATG-ATCTTACA--TTTT----AATG-TA--CAT--TT----AATAGTTTTAAAAT---A-C-------------AC------T--TTCATTTGT-G-AATAAAC--A----ATAG-A-AAAGGTATA-CAGAGTGCA-TTTAT---CA---------TTCTA--CTCTG--C--ATGGTT-----T--A-AATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA--TT--A---A--------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-TATACGT--TT----GA-----------T---A-CCTCTGGTTATTAAAT------T--TTCATTCGT-G--------------AATAG-G-TAA---ATA-TGGAGTGGATCTTATT--CA-TTGT-------TA--CTC-A--CGTACAG-TA----T--A-AC-TACT-TAATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTTT--T-----AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTA--AAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTG--T-TTACCA-CCTTAAAACAT-T-TTATACAAGgtcagacattgaacttttgatcttgacccctaaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 11 1 11 1 11 1 11 1 111 1 1 1 222 111 4444444 1 11 1 1 1 1 1 2222 1 11 44444444 222 1 1 1 1 1 1 222 1 77777777777777 333333 222 1 1 11 11 1 1 11 333333 111 444444 999999999999999999999999999999 1 1 1 22 222 4444444444444444444 1 1 11 22222 11 111 11 111 333333333 22222 444444444444 1 2222 1 2222222222222222222222222 777777777777777777777777777777 1111 11 66666666666 4444444444444444 2222 55555555555 1 111 1 11 5555555555555 111111 44444444444444444 1 2222222222222 222222222222222 33333333 1111 55555555555555555555 1111 666666666666666666666666666666666666666666666666 222222222222222 111 11111111111111 6666666666666666666666666666666 3333333333 222222222 222222 111111
lowQualScore : 33 0 33 0 2 3 33 0 2 9 3 33 0 33 2 777 0 3 3 555 888 6666666 7 3 1 88 7 3 3 3 7 3 3 2222 6 88 33333333 7 333 5 5 5 22 5 5 3 7 7 333 3 6 7 7 11111111111111 444444 555 3 3 7 6 88 88 7 2 3 88 6 888888 999 333333 000000000000000000000000000000 3 3 3 0 00 333 6666666666666666666 3 3 33 11111 99 7 888 88 999 888888888 66666 888888888888 5 22 1 4444 5 1 5555555555555555555555555 777777777777777777777777777777 7 5555 88 33333333333 4444444444444444 1 1111 22222222222 1 0 333 6 0 33 6666666666666 44 555555 1 5 44444444444444444 66 0 5 7777777777777 333333333333333 5 11111111 5 0 44 5 3333 4 77777777777777777777 5 888 66 0000 0 5 66 55 222222222222222222222222222222222222222222222222 3 555555555555555 111 2 3 88888888888888 0 888 1111111111111111111111111111111 3 77 3 0 4 4444444444 1 000000000 777 0 4 55 2 111111 66 444444
lowQualScore : .. . .. . . . .. . . . . .. . .. . ... . . . ... ... ....... . . . .. . . . . . . . .... . .. ........ . ... . . . .. . . . . . ... . . . . .............. ...... ... . . . . .. .. . . . .. . ...... ... ...... .............................. . . . . .. ... ................... . . .. ..... .. . ... .. ... ......... ..... ............ . .. . .... . . ......................... .............................. . .... .. ........... ................ . .... ........... . . ... . . .. ............. .. ...... . . ................. .. . . ............. ............... . ........ . . .. . .... . .................... . ... .. .... . . .. .. ................................................ . ............... ... . . .............. . ... ............................... . .. . . . .......... . ......... ... . . .. . ...... .. ......
lowQualScore : 88 0 88 0 5 2 88 0 5 2 2 22 0 55 5 555 0 3 3 777 333 7777777 3 3 0 33 3 3 3 3 3 3 3 7777 0 33 77777777 3 333 5 5 5 00 5 0 3 3 3 333 3 7 3 3 77777777777777 777777 000 3 3 3 7 33 33 3 0 3 33 7 333333 000 000000 777777777777777777777777777777 3 3 3 7 77 333 3333333333333333333 3 3 33 77777 33 3 333 55 555 000000000 55555 555555555555 5 00 0 0000 0 0 0000000000000000000000000 777777777777777777777777777777 3 3333 33 33333333333 1111111111111111 0 2222 00000000000 0 0 555 5 0 88 8888888888888 66 666666 0 0 66666666666666666 99 0 0 5555555555555 000000000000000 0 11111111 0 8 55 0 7777 0 00000000000000000000 0 888 99 6666 9 0 99 55 555555555555555555555555555555555555555555555555 6 222222222222222 222 0 6 99999999999999 2 222 1111111111111111111111111111111 8 22 4 9 4 8888888888 1 111111111 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TTTCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATATC---TTACCG-CCTTNAAATAT-G-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTTACAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAAATTTCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATA-----TTACCG-CCTTNAAATAT-G-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTTACAATCCTTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--ATTTTA-GGG-TAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAG-AAACCAAAA-TTTCTA--TTTCAT--T-----TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATT---ATAT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-A------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------------GAAAATCCATAGAGACTCAA-CA-CTGTGTCCTCCGTG-TTCCATGAAGT-ATATCTGTA---TTGCCATA--TACACATAGAT--AATC-CG-CAGACCCAACTTC-AAAGGGAA-CCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT----AGGAGA------TAAGAAAGCTACAATATTT-TAT-TGGACTT-TT--GATATCGT-TTACTGTCTTTTGAATAT-G-TT-TACGAGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------G-T---GA-GGG-GAGGG-TGCGTG-ATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACA-TC-A--TTGCA-A---CATG----------AATA-AT---ATA---TCT----AGTG-TA--CGT--TC----G------------T---A-C-------------AC------T--T--GTTTGT-G-A-TAAGC--ATGCAGTAG-A-AAAGGCAAA-CGGAATGCATTTTATTTATATTTAT----TTATA--CTC-G-CA-ATGG-C-----TA-A-AA-CGTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTTG--A---GGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------G-T---AG-TTG-GAGGG----G-G-ATA-AAAACCCACATAAAATTCTGTTGTCTGACA-TCAA--TTGCAGG---GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTTG--CAT--TTAAAGA------------T---ATC-------------ACATCCCTT--TTCATTTTT-A-A-T--AC--A--CTGTTG-T-AAAAGTATA-CAGAGT
gi|12 : gggcT----G------------A---A-C-------------GC------G--TTTATTTGT-G-A-GTAAG--G--CAGTA--A-AGAGGTATA-TAGAGTGC----TGCTAGCA---GT----TGATA--TT--------TAG-T-----C--A-------T-CGATTCGA--AGTT---ACACT-CATC----ATATCTAGTTTCAA---GGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : ca--TT----G------------T---A-C-------------AC------T--TTCATTAAT-G-AATAAAC--A--T--TGG-T-AAAGGAATA-CGGAGTGCATTTT-----CA-TTAT----CAATATTCTC-G-TA--TGG-TGTGCCT-------TGTTA--ATCCATT-AGTTCCAACATTACAGG----G----GAGTGT--G---GGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatttgtacgtttgatagttttaaa--TT----G------------T---A-C-------------ACT-----T--TTCATTAAT-GAA-TAAA---A--CATTGGTATAAAGGAATATCGGAGTGCAT
gi|15 : gtacgatttgatagttttaaaTAAATTAT-G-------GAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------G-TTATAA-GGG-GAGGG----G-T-ATA-AAAACTCCCATAGGTTCCTGTCATgtgcgattattaattgatccgtattggtggtttttcttagtccttgttattccattagttcc
gi|16 : attataaagaagtatgaAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTT-GGGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AGATCAAAAGATC-G-------ATGTCGGAT-A--AATA-TCTAAAT-------------TCAAATACATGTTG-T---TA-GGGAGAGGG----G-G-ATA-AAGATTCCCGTAATTCTCTGTCATACGGCA-
gi|18 : cgAACAAT-CATG----A----TA-TTC--C---AAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--ATTTTA-GGGGTACCACCAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCCA--CCA----ACAAATTAAAAATT-------------------TCACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAGCA--CCAAAATCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATT---ATATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTC-GGCACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACA-CGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CA-CCATGTCCTCCGTG-TTCCACGAAG---TGTGTGTA---TTGC-------------------GATC-TG-CAGACTCAACTT-CAAAGGGAA-C---CCTGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAA------------------------AATCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC----AGGAGA------T-----AGCTACAATATTT-TAT-TGGACTTGTT--GATA-----TT------CT--AAATAT-GTTT-TATGACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GAGGGG-GAGGG-TGTGTG-ATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACA-TC-A--TT----------------------------------A--TTTT----AGTG-TA--CGT--TCA---G------------T---A-C-------------AC------T--TTCATTTGTAA-A-TAA----G--CAGTAG-A-AAAGGCAAA-TGGAATGCATTTTttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAATTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG-A--CCAAAAATTTCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGC-AACCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGG-TTTTTAAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAG----TTTTTA------------TTATTA--------TTAT----TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTG-TTCGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAA-ATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCATGAAGTAATATGTGTAAATTTGCCA-AATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCG-CCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT----AGAAAA------T----AAGCTACAAGGTTGATATATATA-TT-TT--GTTA-------ACCG-TCCTCAAATATGG-TT-TACGAACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G-TAA-GA-AGG-AAAGG--G-G-T-ATA-GGAACTCCCGTTAGTT---------------TC-A--TTAC--A---C--------------ATA-AT---ACA--TTTT----A--G-TG--CG------------------------------------------AT------G--TTC---TGT-GAA-TAA----A--CAGTGG-T-AAAGGCAAA-CATAGTTCATTTTATTTACA-TTGT----TTATA---TC-GTTA-ATGG-C-----T--ATAA-TGTGATAACCCTTT-------AACATT-CGT----------TGGTTT--T---AG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : GAGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGT---AG-GAG-GAGGGGTG-G-GGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATA-TCGA--TCACA-AAATCAT-----------GATG-TT---ATA--TTTT----AATG-TA--CGT--TT----AATAGATTCAAAAT---A-C-------------AC------T--TCCATTTGT-A-AATAAAC--A-------G-A-AGAGGTATA-CAGAGTGCATTTGATATACA-TTGTATTATTATA--ATC-G-CA--TGT-T-----TTTA-CT-TGT--CAATCCATA-AGTCTCAACATT-CATCGTATA----TAGCTT--TAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------G-T---TAGGGG-GAGGG-TG-G-G--TA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT-----TTAC--A---CAT-----------AATATAT---ACA--TTTT----AATG-TA--TATAGTT----G------------TTAAA-T-------------AC------CAGTACACTT-T-G-A-TGAATAAA--CAGTAG-----AGGTATA-CAGAGTATATTTTATTTAC---TA-----TTATA--CTT-G-T--ATGT-T-----TTCA-AA-TGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTTT--T---AGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACA-TC-AGATCGCA-----CAT-----------AATG-ATCTTACA--TTTT----AATG-TA--CAT--TT----AATAGTTTTAAAAT---A-C-------------AC------T--TTCATTTGT-G-AATAAAC--A----ATAG-A-AAAGGTATA-CAGAGTGCA-TTTAT---CA---------TTCTA--CTCTG-C--ATGGTT-----T--A-AATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA--TT--A---A--------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-TATACGT--TT----GA-----------T---A-CCTCTGGTTATTAAAT------T--TTCATTCGT-G--------------AATAG-G-TAA---ATA-TGGAGTGGATCTTATT--CA-TTGT-------TA--CTC-A-CGTACAG-TA----T--A-AC-TACT-TAATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTTT--T-----AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTA--AAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTGTTTACCA-CCTTAAAACAT-T-TTATACAAGgtcagacattgaacttttgatcttgacccctaaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 11 1 11 1 11 1 11 1 111 1 1 1 222 111 4444444 1 11 1 1 1 1 1 2222 1111 11 44444444 222 1 1 1 1 1 1 222 1 77777777777777 333333 222 1 1 11 11 1 1 11 333333 111 444444 999999999999999999999999999999 1 1 1 22 222 4444444444444444444 1 1 11 22222 11 111 11 111 333333333 22222 444444444444 1 2222 1 2222222222222222222222222 777777777777777777777777777777 1111 11 66666666666 4444444444444444 2222 444444444444 1 111 1 11 5555555555555555 2222 44444444444444444 1 2222222222222 222222222222222 33333333 1111 55555555555555555555 1111 666666666666666666666666666666666666666666666666 222222222222222 111 22222222222222222 6666666666666666666666666666666 3333333333 222222222 222222 111111
lowQualScore : 33 0 33 0 2 3 33 0 2 9 3 33 0 33 2 777 0 3 3 555 888 6666666 7 3 1 88 7 3 3 3 7 3 3 2222 3333 88 33333333 7 333 5 5 5 22 5 5 3 7 7 333 3 6 7 7 11111111111111 444444 555 3 3 7 6 88 88 7 2 3 88 6 888888 999 333333 000000000000000000000000000000 3 3 3 0 00 333 6666666666666666666 3 3 33 11111 99 7 888 88 999 888888888 66666 888888888888 5 22 1 4444 5 1 5555555555555555555555555 777777777777777777777777777777 7 5555 88 33333333333 4444444444444444 1 1111 333333333333 1 0 333 6 0 33 7777777777777777 1 0000 1 5 44444444444444444 66 0 5 7777777777777 333333333333333 5 11111111 5 0 44 5 3333 4 77777777777777777777 5 888 66 0000 0 5 66 55 222222222222222222222222222222222222222222222222 3 555555555555555 111 2 3 44444444444444444 1 4444444444444444444444444444444 1 77 3 0 4 4444444444 1 000000000 777 0 4 55 2 111111 66 444444
lowQualScore : .. . .. . . . .. . . . . .. . .. . ... . . . ... ... ....... . . . .. . . . . . . . .... .... .. ........ . ... . . . .. . . . . . ... . . . . .............. ...... ... . . . . .. .. . . . .. . ...... ... ...... .............................. . . . . .. ... ................... . . .. ..... .. . ... .. ... ......... ..... ............ . .. . .... . . ......................... .............................. . .... .. ........... ................ . .... ............ . . ... . . .. ................ . .... . . ................. .. . . ............. ............... . ........ . . .. . .... . .................... . ... .. .... . . .. .. ................................................ . ............... ... . . ................. . ............................... . .. . . . .......... . ......... ... . . .. . ...... .. ......
lowQualScore : 88 0 88 0 5 2 88 0 5 2 2 22 0 55 5 555 0 3 3 777 333 7777777 3 3 0 33 3 3 3 3 3 3 3 7777 7777 33 77777777 3 333 5 5 5 00 5 0 3 3 3 333 3 7 3 3 77777777777777 777777 000 3 3 3 7 33 33 3 0 3 33 7 333333 000 000000 777777777777777777777777777777 3 3 3 7 77 333 3333333333333333333 3 3 33 77777 33 3 333 55 555 000000000 55555 555555555555 5 00 0 0000 0 0 0000000000000000000000000 777777777777777777777777777777 3 3333 33 33333333333 1111111111111111 0 2222 000000000000 0 0 555 5 0 88 5555555555555555 0 6666 0 0 66666666666666666 99 0 0 5555555555555 000000000000000 0 11111111 0 8 55 0 7777 0 00000000000000000000 0 888 99 6666 9 0 99 55 555555555555555555555555555555555555555555555555 6 222222222222222 222 0 6 88888888888888888 4 1111111111111111111111111111111 0 22 4 9 4 8888888888 1 111111111 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----T--TATACTC-G-CA-ATGG-T-----T--A-AA-TGTT-CAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----T--TATACTC-G-CA-ATGG-T-----T--A-AA-TGTTACAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--ATTTTA-GGG-TAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAG-AAACCAAAA-TT-TCTA--TTTCAT--T-----TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATT---ATAT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-A------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------------GAAAATCCATAGAGACTCAA-CA-CTGTGTCCTCCGTG-TTCCATGAAGT-ATATCTGTA---TTGCCATA--TACACATAGAT--AATC-CG-CAGACCCAACTTC-AAAGGGAA-CCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT----AGGAGA------TAAGAAAGCTACAATATTT-TAT-TGGACTT-TT--GATAT---CGTTTACTGTCTTTTGAATATG-TT-TACGAGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------G-T---GA-GGG-GAGGG-TGCGTG-ATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACA-TC-A--TTGCA-A---CATG----------AATA-AT---ATA---TCT----AGTG-TA--CGT--TC----G------------T---A-C-------------AC------T--T--GTTTGT-G-A-TAAGC--ATGCAGTAG-A-AAAGGCAAA-CGGAATGCATTTTATTTATATTTAT----T--TATACTC-G-CA-ATGG-C-----TA-A-AA-CGTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTTG--A---GGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------G-T---AG-TTG-GAGGG----G-G-ATA-AAAACCCACATAAAATTCTGTTGTCTGACA-TCAA--TTGCAGG---GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTTG--CAT--TTAAAGA------------T---ATC-------------ACATCCCTT--TTCATTTTT-A-A-T--AC--A--CTGTTG-T-AAAAGTATA-CAGAGT
gi|12 : gggcT----G------------A---A-C-------------GC------G--TTTATTTGT-G-A-GTAAG--G--CAGTA--A-AGAGGTATA-TAGAGTGC----TGCTAGCA---GT----T--GATATT--------TAG-T-----C--A-------T-CGATTCGA--AGTT---ACACT-CATC----ATATCTAGTTTCAA---GGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : ca--TT----G------------T---A-C-------------AC------T--TTCATTAAT-G-AATAAAC--A--T--TGG-T-AAAGGAATA-CGGAGTGCATTTT-----CA-TTAT----CAATATTCTC-G-T--ATGG-TGTGCCT-------TGTT--AATCCATT-AGTTCCAACATTACAGG----G----GAGTGT--G---GGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatttgtacgtttgatagttttaaa--TT----G------------T---A-C-------------ACT-----T--TTCATTAAT-GAA-TAAA---A--CATTGGTATAAAGGAATATCGGAGTGCAT
gi|15 : gtacgatttgatagttttaaaTAAATTATG-------GAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------G-TTATAA-GGG-GAGGG----G-T-ATA-AAAACTCCCATAGGTTCCTGTCATgtgcgattattaattgatccgtattggtggtttttcttagtccttgttattccattagttcc
gi|16 : attataaagaagtatgaAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTT-GGGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AGATCAAAAGATC-G-------ATGTCGGAT-A--AATA-TCTAAAT-------------TCAAATACATGTTG-T---TA-GGGAGAGGG----G-G-ATA-AAGATTCCCGTAATTCTCTGTCATACGGCA-
gi|18 : cgAACAAT-CATG----A----TA-TTC--C---AAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--ATTTTA-GGGGTACCACCAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCCA--CCA----ACAAATTAAAAATT-------------------TCACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAGCA--CCAAAA-TCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATT---ATATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTC-GGCACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACA-CGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CA-CCATGTCCTCCGTG-TTCCACGAAG---TGTGTGTA---TTGC-------------------GATC-TG-CAGACTCAACTT-CAAAGGGAA-C---CCTGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAA------------------------AATCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC----AGGAGA------T-----AGCTACAATATTT-TAT-TGGACTTGTT--GATAT---------------TCTAAATATGTTT-TATGACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GAGGGG-GAGGG-TGTGTG-ATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACA-TC-A--TT----------------------------------A--TTTT----AGTG-TA--CGT--TCA---G------------T---A-C-------------AC------T--TTCATTTGTAA-A-TAA----G--CAGTAG-A-AAAGGCAAA-TGGAATGCATTTTttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAATTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG-A--CCAAAAATT-TCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGC-AACCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGG-TTTTTAAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAG----TTTTTA------------TTATTA--------TTAT----TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTG-TTCGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAA-ATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCATGAAGTAATATGTGTAAATTTGCCA-AATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCG-CCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT----AGAAAA------TA--A--GCTACAAGGTTGATATATATA-TT-TT--GTTA---------ACCG-TCCTCAAATATGGTT-TACGAACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G-TAA-GA-AGG-AAAGG--G-G-T-ATA-GGAACTCCCGTTAGTT---------------TC-A--TTAC--A---C--------------ATA-AT---ACA--TTTT----A--G-TG--CG------------------------------------------AT------G--TTC---TGT-GAA-TAA----A--CAGTGG-T-AAAGGCAAA-CATAGTTCATTTTATTTACA-TTGT----T--TATA-TC-GTTA-ATGG-C-----T--ATAA-TGTGATAACCCTTT-------AACATT-CGT----------TGGTTT--T---AG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : GAGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGT---AG-GAG-GAGGGGTG-G-GGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATA-TCGA--TCACA-AAATCAT-----------GATG-TT---ATA--TTTT----AATG-TA--CGT--TT----AATAGATTCAAAAT---A-C-------------AC------T--TCCATTTGT-A-AATAAAC--A-------G-A-AGAGGTATA-CAGAGTGCATTTGATATACA-TTGTATTAT--TATAATC-G-CA--TGT-T-----TTTA-CT-TGT--CAATCCATA-AGTCTCAACATT-CATCGTATA----TAGCTT--TAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------G-T---TAGGGG-GAGGG-TG-G-G--TA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT-----TTAC--A---CAT-----------AATATAT---ACA--TTTT----AATG-TA--TATAGTT----G------------TTAAA-T-------------AC------CAGTACACTT-T-G-A-TGAATAAA--CAGTAG-----AGGTATA-CAGAGTATATTTTATTTAC---TA-----T--TATACTT-G-T--ATGT-T-----TTCA-AA-TGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTTT--T---AGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACA-TC-AGATCGCA-----CAT-----------AATG-ATCTTACA--TTTT----AATG-TA--CAT--TT----AATAGTTTTAAAAT---A-C-------------AC------T--TTCATTTGT-G-AATAAAC--A----ATAG-A-AAAGGTATA-CAGAGTGCA-TTTAT---CA---------T--TCTACTCTG-C--ATGGTT-----T--A-AATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA--TT--A---A--------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-TATACGT--TT----GA-----------T---A-CCTCTGGTTATTAAAT------T--TTCATTCGT-G--------------AATAG-G-TAA---ATA-TGGAGTGGATCTTATT--CA-TTGT---------TACTC-A-CGTACAG-TA----T--A-AC-TACT-TAATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTTT--T-----AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTA--AAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTGT--TTACCA-CCTTAAAACATT-TTATACAAGgtcagacattgaacttttgatcttgacccctaaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 11 1 11 1 11 1 11 1 111 1 1 1 222 111 4444444 1 11 1 1 1 1 1 2222 1111 11 44444444 222 1 1 1 1 1 1 222 1 77777777777777 333333 222 1 1 11 11 1 1 11 333333 111 444444 999999999999999999999999999999 1 1 1 22 222 4444444444444444444 1 1 11 22222 11 111 11 111 333333333 22222 444444444444 1 2222 1 2222222222222222222222222 777777777777777777777777777777 1111 11 66666666666 4444444444444444 2222 444444444444 1 111 1 11 5555555555555555 2222 44444444444444444 1 2222222222222 222222222222222 33333333 1111 55555555555555555555 1111 666666666666666666666666666666666666666666666666 222222222222222 111 11111111111111 5555555555555555555555555555555 3333333333 222222222 222222 111111
lowQualScore : 33 0 33 0 2 3 33 0 2 9 3 33 0 33 2 777 0 3 3 555 888 6666666 7 3 1 88 7 3 3 3 7 3 3 2222 3333 88 33333333 7 333 5 5 5 22 5 5 3 7 7 333 3 6 7 7 11111111111111 444444 555 3 3 7 6 88 88 7 2 3 88 6 888888 999 333333 000000000000000000000000000000 3 3 3 0 00 333 6666666666666666666 3 3 33 11111 99 7 888 88 999 888888888 66666 888888888888 5 22 1 4444 5 1 5555555555555555555555555 777777777777777777777777777777 7 5555 88 33333333333 4444444444444444 1 1111 333333333333 1 0 333 6 0 33 7777777777777777 1 0000 1 5 44444444444444444 66 0 5 7777777777777 333333333333333 5 11111111 5 0 44 5 3333 4 77777777777777777777 5 888 66 0000 0 5 66 55 222222222222222222222222222222222222222222222222 3 555555555555555 111 2 3 88888888888888 0 888 8888888888888888888888888888888 1 77 3 0 4 4444444444 1 000000000 777 0 4 55 2 111111 66 444444
lowQualScore : .. . .. . . . .. . . . . .. . .. . ... . . . ... ... ....... . . . .. . . . . . . . .... .... .. ........ . ... . . . .. . . . . . ... . . . . .............. ...... ... . . . . .. .. . . . .. . ...... ... ...... .............................. . . . . .. ... ................... . . .. ..... .. . ... .. ... ......... ..... ............ . .. . .... . . ......................... .............................. . .... .. ........... ................ . .... ............ . . ... . . .. ................ . .... . . ................. .. . . ............. ............... . ........ . . .. . .... . .................... . ... .. .... . . .. .. ................................................ . ............... ... . . .............. . ... ............................... . .. . . . .......... . ......... ... . . .. . ...... .. ......
lowQualScore : 88 0 88 0 5 2 88 0 5 2 2 22 0 55 5 555 0 3 3 777 333 7777777 3 3 0 33 3 3 3 3 3 3 3 7777 7777 33 77777777 3 333 5 5 5 00 5 0 3 3 3 333 3 7 3 3 77777777777777 777777 000 3 3 3 7 33 33 3 0 3 33 7 333333 000 000000 777777777777777777777777777777 3 3 3 7 77 333 3333333333333333333 3 3 33 77777 33 3 333 55 555 000000000 55555 555555555555 5 00 0 0000 0 0 0000000000000000000000000 777777777777777777777777777777 3 3333 33 33333333333 1111111111111111 0 2222 000000000000 0 0 555 5 0 88 5555555555555555 0 6666 0 0 66666666666666666 99 0 0 5555555555555 000000000000000 0 11111111 0 8 55 0 7777 0 00000000000000000000 0 888 99 6666 9 0 99 55 555555555555555555555555555555555555555555555555 6 222222222222222 222 0 6 99999999999999 2 222 9999999999999999999999999999999 0 22 4 9 4 8888888888 1 111111111 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTT-CAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTT-CAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--ATTTTA-GGG-TAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAG-AAACCAAAA-TT-TCTA--TTTCAT--T-----TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATT---ATAT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-A------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------------GAAAATCCATAGAGACTCAA-CA-CTGTGTCCTCCGTG-TTCCATGAAGT-ATATCTGTA---TTGCCATA--TACACATAGAT--AATC-CG-CAGACCCAACTTC-AAAGGGAA-CCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT----AGGAGA------TAAGAAAGCTACAATATTT-TAT-TGGACTT-TT--GATAT---CGTTTACTGTCTTTTGAATATG-TT-TACGAGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------G-T---GA-GGG-GAGGG-TGCGTG-ATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACA-TC-A--TTGCA-A---CATG----------AATA-AT---ATA---TCT----AGTG-TA--CGT--TC----G------------T---A-C-------------AC------T--T--GTTTGT-G-A-TAAGC--ATGCAGTAG-A-AAAGGCAAA-CGGAATGCATTTTATTTATATTTAT----TTATA--CTC-G-CA-ATGG-C-----TA-A-AA-CGTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTTG--A---GGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------G-T---AG-TTG-GAGGG----G-G-ATA-AAAACCCACATAAAATTCTGTTGTCTGACA-TCAA--TTGCAGG---GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTTG--CAT--TTAAAGA------------T---ATC-------------ACATCCCTT--TTCATTTTT-A-A-T--AC--A--CTGTTG-T-AAAAGTATA-CAGAGT
gi|12 : gggcT----G------------A---A-C-------------GC------G--TTTATTTGT-G-A-GTAAG--G--CAGTA--A-AGAGGTATA-TAGAGTGC----TGCTAGCA---GT----TGATA--TT--------TAG-T-----C--A-------T-CGATTCGA--AGTT---ACACT-CATC----ATATCTAGTTTCAA---GGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : ca--TT----G------------T---A-C-------------AC------T--TTCATTAAT-G-AATAAAC--A--T--TGG-T-AAAGGAATA-CGGAGTGCATTTT-----CA-TTAT----CAATATTCTC-G-TA--TGG-TGTGCCT-------TGTT--AATCCATT-AGTTCCAACATTACAGG----G----GAGTGT--G---GGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatttgtacgtttgatagttttaaa--TT----G------------T---A-C-------------ACT-----T--TTCATTAAT-GAA-TAAA---A--CATTGGTATAAAGGAATATCGGAGTGCAT
gi|15 : gtacgatttgatagttttaaaTAAATTATG-------GAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------G-TTATAA-GGG-GAGGG----G-T-ATA-AAAACTCCCATAGGTTCCTGTCATgtgcgattattaattgatccgtattggtggtttttcttagtccttgttattccattagttcc
gi|16 : attataaagaagtatgaAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTT-GGGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AGATCAAAAGATC-G-------ATGTCGGAT-A--AATA-TCTAAAT-------------TCAAATACATGTTG-T---TA-GGGAGAGGG----G-G-ATA-AAGATTCCCGTAATTCTCTGTCATACGGCA-
gi|18 : cgAACAAT-CATG----A----TA-TTC--C---AAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--ATTTTA-GGGGTACCACCAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCCA--CCA----ACAAATTAAAAATT-------------------TCACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAGCA--CCAAAA-TCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATT---ATATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTC-GGCACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACA-CGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CA-CCATGTCCTCCGTG-TTCCACGAAG---TGTGTGTA---TTGC-------------------GATC-TG-CAGACTCAACTT-CAAAGGGAA-C---CCTGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAA------------------------AATCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC----AGGAGA------T-----AGCTACAATATTT-TAT-TGGACTTGTT--GATAT---------------TCTAAATATGTTT-TATGACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GAGGGG-GAGGG-TGTGTG-ATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACA-TC-A--TT----------------------------------A--TTTT----AGTG-TA--CGT--TCA---G------------T---A-C-------------AC------T--TTCATTTGTAA-A-TAA----G--CAGTAG-A-AAAGGCAAA-TGGAATGCATTTTttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAATTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG-A--CCAAAAATT-TCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGC-AACCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGG-TTTTTAAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAG----TTTTTA------------TTATTA--------TTAT----TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTG-TTCGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAA-ATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCATGAAGTAATATGTGTAAATTTGCCA-AATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCG-CCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT----AGAAAA------TA--A--GCTACAAGGTTGATATATATA-TT-TT--GTTA---------ACCG-TCCTCAAATATGGTT-TACGAACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G-TAA-GA-AGG-AAAGG--G-G-T-ATA-GGAACTCCCGTTAGTT---------------TC-A--TTAC--A---C--------------ATA-AT---ACA--TTTT----A--G-TG--CG------------------------------------------AT------G--TTC---TGT-GAA-TAA----A--CAGTGG-T-AAAGGCAAA-CATAGTTCATTTTATTTACA-TTGT----TTATA---TC-GTTA-ATGG-C-----T--ATAA-TGTGATAACCCTTT-------AACATT-CGT----------TGGTTT--T---AG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : GAGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGT---AG-GAG-GAGGGGTG-G-GGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATA-TCGA--TCACA-AAATCAT-----------GATG-TT---ATA--TTTT----AATG-TA--CGT--TT----AATAGATTCAAAAT---A-C-------------AC------T--TCCATTTGT-A-AATAAAC--A-------G-A-AGAGGTATA-CAGAGTGCATTTGATATACA-TTGTATTATTATA--ATC-G-CA--TGT-T-----TTTA-CT-TGT--CAATCCATA-AGTCTCAACATT-CATCGTATA----TAGCTT--TAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------G-T---TAGGGG-GAGGG-TG-G-G--TA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT-----TTAC--A---CAT-----------AATATAT---ACA--TTTT----AATG-TA--TATAGTT----G------------TTAAA-T-------------AC------CAGTACACTT-T-G-A-TGAATAAA--CAGTAG-----AGGTATA-CAGAGTATATTTTATTTAC---TA-----TTATA--CTT-G-T--ATGT-T-----TTCA-AA-TGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTTT--T---AGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACA-TC-AGATCGCA-----CAT-----------AATG-ATCTTACA--TTTT----AATG-TA--CAT--TT----AATAGTTTTAAAAT---A-C-------------AC------T--TTCATTTGT-G-AATAAAC--A----ATAG-A-AAAGGTATA-CAGAGTGCA-TTTAT---CA---------TTCTA--CTCTG-C--ATGGTT-----T--A-AATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA--TT--A---A--------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-TATACGT--TT----GA-----------T---A-CCTCTGGTTATTAAAT------T--TTCATTCGT-G--------------AATAG-G-TAA---ATA-TGGAGTGGATCTTATT--CA-TTGT-------TA--CTC-A-CGTACAG-TA----T--A-AC-TACT-TAATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTTT--T-----AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTA--AAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTGT--TTACCA-CCTTAAAACATT-TTATACAAGgtcagacattgaacttttgatcttgacccctaaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 11 1 11 1 11 1 11 1 111 1 1 1 222 111 4444444 1 11 1 1 1 1 1 2222 1111 11 44444444 222 1 1 1 1 1 1 222 1 77777777777777 333333 222 1 1 11 11 1 1 11 333333 111 444444 999999999999999999999999999999 1 1 1 22 222 4444444444444444444 1 1 11 22222 11 111 11 111 333333333 22222 444444444444 1 2222 1 2222222222222222222222222 777777777777777777777777777777 1111 11 66666666666 4444444444444444 2222 444444444444 1 111 1 11 5555555555555555 2222 44444444444444444 1 2222222222222 222222222222222 33333333 1111 55555555555555555555 1111 666666666666666666666666666666666666666666666666 222222222222222 111 11111111111111 5555555555555555555555555555555 3333333333 222222222 222222 111111
lowQualScore : 33 0 33 0 2 3 33 0 2 9 3 33 0 33 2 777 0 3 3 555 888 6666666 7 3 1 88 7 3 3 3 7 3 3 2222 3333 88 33333333 7 333 5 5 5 22 5 5 3 7 7 333 3 6 7 7 11111111111111 444444 555 3 3 7 6 88 88 7 2 3 88 6 888888 999 333333 000000000000000000000000000000 3 3 3 0 00 333 6666666666666666666 3 3 33 11111 99 7 888 88 999 888888888 66666 888888888888 5 22 1 4444 5 1 5555555555555555555555555 777777777777777777777777777777 7 5555 88 33333333333 4444444444444444 1 1111 333333333333 1 0 333 6 0 33 7777777777777777 1 0000 1 5 44444444444444444 66 0 5 7777777777777 333333333333333 5 11111111 5 0 44 5 3333 4 77777777777777777777 5 888 66 0000 0 5 66 55 222222222222222222222222222222222222222222222222 3 555555555555555 111 2 3 88888888888888 0 888 8888888888888888888888888888888 1 77 3 0 4 4444444444 1 000000000 777 0 4 55 2 111111 66 444444
lowQualScore : .. . .. . . . .. . . . . .. . .. . ... . . . ... ... ....... . . . .. . . . . . . . .... .... .. ........ . ... . . . .. . . . . . ... . . . . .............. ...... ... . . . . .. .. . . . .. . ...... ... ...... .............................. . . . . .. ... ................... . . .. ..... .. . ... .. ... ......... ..... ............ . .. . .... . . ......................... .............................. . .... .. ........... ................ . .... ............ . . ... . . .. ................ . .... . . ................. .. . . ............. ............... . ........ . . .. . .... . .................... . ... .. .... . . .. .. ................................................ . ............... ... . . .............. . ... ............................... . .. . . . .......... . ......... ... . . .. . ...... .. ......
lowQualScore : 88 0 88 0 5 2 88 0 5 2 2 22 0 55 5 555 0 3 3 777 333 7777777 3 3 0 33 3 3 3 3 3 3 3 7777 7777 33 77777777 3 333 5 5 5 00 5 0 3 3 3 333 3 7 3 3 77777777777777 777777 000 3 3 3 7 33 33 3 0 3 33 7 333333 000 000000 777777777777777777777777777777 3 3 3 7 77 333 3333333333333333333 3 3 33 77777 33 3 333 55 555 000000000 55555 555555555555 5 00 0 0000 0 0 0000000000000000000000000 777777777777777777777777777777 3 3333 33 33333333333 1111111111111111 0 2222 000000000000 0 0 555 5 0 88 5555555555555555 0 6666 0 0 66666666666666666 99 0 0 5555555555555 000000000000000 0 11111111 0 8 55 0 7777 0 00000000000000000000 0 888 99 6666 9 0 99 55 555555555555555555555555555555555555555555555555 6 222222222222222 222 0 6 99999999999999 2 222 9999999999999999999999999999999 0 22 4 9 4 8888888888 1 111111111 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTT-CAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTT-CAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--ATTTTA-GGG-TAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAG-AAACCAAAA-TT-TCTA--TTTCAT--T-----TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATT---ATAT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-A------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------------GAAAATCCATAGAGACTCAA-CA-CTGTGTCCTCCGTG-TTCCATGAAGT-ATATCTGTA---TTGCCATA--TACACATAGAT--AATC-CG-CAGACCCAACTTC-AAAGGGAA-CCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT----AGGAGA------TAAGAAAGCTACAATATTT-TAT-TGGACTT-TT--GATAT---CGTTTACTGTCTTTTGAATATG-TT-TACGAGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------G-T---GA-GGG-GAGGG-TGCGTG-ATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACA-TC-A--TTGCA-A---CATG----------AATA-AT---ATA---TCT----AGTG-TA--CGT--TC----G------------T---A-C-------------AC------T--T--GTTTGT-G-A-TAAGC--ATGCAGTAG-A-AAAGGCAAA-CGGAATGCATTTTATTTATATTTAT----TTATA--CTC-G-CA-ATGG-C-----TA-A-AA-CGTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTTG--A---GGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------G-T---AG-TTG-GAGGG----G-G-ATA-AAAACCCACATAAAATTCTGTTGTCTGACA-TCAA--TTGCAGG---GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTTG--CAT--TTAAAGA------------T---ATC-------------ACATCCCTT--TTCATTTTT-A-A-T--AC--A--CTGTTG-T-AAAAGTATA-CAGAGT
gi|12 : gggcT----G------------A---A-C-------------GC------G--TTTATTTGT-G-A-GTAAG--G--CAGTA--A-AGAGGTATA-TAGAGTGC----TGCTAGCA---GT----TGATA--TT--------TAG-T-----C--A-------T-CGATTCGA--AGTT---ACACT-CATC----ATATCTAGTTTCAA---GGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : ca--TT----G------------T---A-C-------------AC------T--TTCATTAAT-G-AATAAAC--A--T--TGG-T-AAAGGAATA-CGGAGTGCATTTT-----CA-TTAT----CAATATTCTC-G-TA--TGG-TGTGCCT-------TGTT--AATCCATT-AGTTCCAACATTACAGG----G----GAGTGT--G---GGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatttgtacgtttgatagttttaaa--TT----G------------T---A-C-------------ACT-----T--TTCATTAAT-GAA-TAAA---A--CATTGGTATAAAGGAATATCGGAGTGCAT
gi|15 : gtacgatttgatagttttaaaTAAATTATG-------GAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------G-TTATAA-GGG-GAGGG----G-T-ATA-AAAACTCCCATAGGTTCCTGTCATgtgcgattattaattgatccgtattggtggtttttcttagtccttgttattccattagttcc
gi|16 : attataaagaagtatgaAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTT-GGGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AGATCAAAAGATC-G-------ATGTCGGAT-A--AATA-TCTAAAT-------------TCAAATACATGTTG-T---TA-GGGAGAGGG----G-G-ATA-AAGATTCCCGTAATTCTCTGTCATACGGCA-
gi|18 : cgAACAAT-CATG----A----TA-TTC--C---AAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--ATTTTA-GGGGTACCACCAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCCA--CCA----ACAAATTAAAAATT-------------------TCACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAGCA--CCAAAA-TCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATT---ATATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTC-GGCACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACA-CGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CA-CCATGTCCTCCGTG-TTCCACGAAG---TGTGTGTA---TTGC-------------------GATC-TG-CAGACTCAACTT-CAAAGGGAA-C---CCTGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAA------------------------AATCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC----AGGAGA------T-----AGCTACAATATTT-TAT-TGGACTTGTT--GATAT---------------TCTAAATATGTTT-TATGACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GAGGGG-GAGGG-TGTGTG-ATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACA-TC-A--TT----------------------------------A--TTTT----AGTG-TA--CGT--TCA---G------------T---A-C-------------AC------T--TTCATTTGTAA-A-TAA----G--CAGTAG-A-AAAGGCAAA-TGGAATGCATTTTttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAATTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG-A--CCAAAAATT-TCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGC-AACCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGG-TTTTTAAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAG----TTTTTA------------TTATTA--------TTAT----TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTG-TTCGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAA-ATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCATGAAGTAATATGTGTAAATTTGCCA-AATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCG-CCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT----AGAAAA------TA--A--GCTACAAGGTTGATATATATA-TT-TT--GTTA---------ACCG-TCCTCAAATATGGTT-TACGAACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------G-TAA-GA-AGG-AAAGG--G-G-T-ATA-GGAACTCCCGTTAGTT---------------TC-A--TTAC--A---C--------------ATA-AT---ACA--TTTT----A--G-TG--CG------------------------------------------AT------G--TTC---TGT-GAA-TAA----A--CAGTGG-T-AAAGGCAAA-CATAGTTCATTTTATTTACA-TTGT----TTATA---TC-GTTA-ATGG-C-----T--ATAA-TGTGATAACCCTTT-------AACATT-CGT----------TGGTTT--T---AG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : GAGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGT---AG-GAG-GAGGGGTG-G-GGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATA-TCGA--TCACA-AAATCAT-----------GATG-TT---ATA--TTTT----AATG-TA--CGT--TT----AATAGATTCAAAAT---A-C-------------AC------T--TCCATTTGT-A-AATAAAC--A-------G-A-AGAGGTATA-CAGAGTGCATTTGATATACA-TTGTATTATTATA--ATC-G-CA--TGT-T-----TTTA-CT-TGT--CAATCCATA-AGTCTCAACATT-CATCGTATA----TAGCTT--TAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------G-T---TAGGGG-GAGGG-TG-G-G--TA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT-----TTAC--A---CAT-----------AATATAT---ACA--TTTT----AATG-TA--TATAGTT----G------------TTAAA-T-------------AC------CAGTACACTT-T-G-A-TGAATAAA--CAGTAG-----AGGTATA-CAGAGTATATTTTATTTAC---TA-----TTATA--CTT-G-T--ATGT-T-----TTCA-AA-TGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTTT--T---AGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACA-TC-AGATCGCA-----CAT-----------AATG-ATCTTACA--TTTT----AATG-TA--CAT--TT----AATAGTTTTAAAAT---A-C-------------AC------T--TTCATTTGT-G-AATAAAC--A----ATAG-A-AAAGGTATA-CAGAGTGCA-TTTAT---CA---------TTCTA--CTCTG-C--ATGGTT-----T--A-AATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA--TT--A---A--------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-TATACGT--TT----GA-----------T---A-CCTCTGGTTATTAAAT------T--TTCATTCGT-G--------------AATAG-G-TAA---ATA-TGGAGTGGATCTTATT--CA-TTGT-------TA--CTC-A-CGTACAG-TA----T--A-AC-TACT-TAATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTTT--T-----AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTA--AAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTGT--TTACCA-CCTTAAAACATT-TTATACAAGgtcagacattgaacttttgatcttgacccctaaa
blockSeqs : AT . . . G A GA A G A A A . AT C CAA G T T AAA CCG TGAAATG T G A AG T C G C A C C CA TCA AC TTTTCA T GTT A T . GC T C A A T ATC C G T T TGGGGTTTTTTTTG TTTTTG AAG C A T G TA TG T G G TG G GGCATG CAA AGAACA TCAAATCGTAATTCAACACTCTGCTGTAG G C T TA AAT CAAATTACGCATAGATAG G A CC CCCG AC A AA . T TATACATGC GTCAG CTTTTTTT A CA T . . T NNNNNNNNNNNNNNNNNNNNNNNNN GAA T GAAC GA TCTGTAAGTCA TTCCCGTGTACATACA T CAAA CATAATTAAA T A ATA C G AA TTTGTTTACCACC A TTT A G ACGTTGGATA TC T A TCAGAAGTCTTTG CATGTTGTTA A TGTGTG . TC G AGA G AGGGATTTTTTTTTGGA T CTT AC TTTA T TA AG GATACCTCTGGTTATTAAATT A ATGAATAAACA TAT T T ATACATTGTATTA TTC GTTAATGGCTATAATGTGAT G T C A CATATC G TAGGGGA CCA T TG T TACCAG TT .
blockSeqs : . . . . G A . . G A A A . AC C . . . . A . . T . C . T . . . A . . A ATT . AATCT T . . . . . . . . . TA . . . . . . . . . A . . . . G A CGACATAGTAAACACCCTACTGTA . . . . . . . . C C A . T . A . . GTA G . TAA G . TG T . . ACCGTC T GTT A . TTTTCAGAT . T . . GTTATAA . GTGGGG . TA . AA A AAAATCAT . . . . . . . AATAGATTCAAAATACACT . AGTAAGGCA T T . TTACATTGT T ACGTACAGTATAACTACTT A T T . CGTATA G CAAGGG . . C T TA . .
blockSeqs : . . . . G . . . G C . . . . . . . A . T G . . . . . T C TTA A . ATGTCGGAT . . . . GTAAGA . TGGG . AA . GA A ACAT . . . . . . . AATAGTTTTAAAATACACT . AATAAACAT A A . TAGCAGT A TGCATGGTTTAAATTGTT T A T . CAAATT G GGGG . . G C . . .
blockSeqs : A . T . ATA . . . . GTGAG . GGT . TC . A A ACAT . . . . . . . AAAGATATCACATCCCTT . AATAAAACA T A . TCATTGT C GTATGGTGTGCCTTGTT A T C . CAC G CAAA . . A T . . .
blockSeqs : T . AT . . . . GGTAG . GG . TC . A G AC . . . . . . . GTTAAATACCAG . AATAAACA A C . CATTAT C GCATGTTTTTACTTGTC A T C . GG G TAGA . . G C . . .
blockSeqs : G . GA . . . . GTTAG . GT . TC . . . . . . . . . . . GTACACTT . AATAAACA T C . TTACTA C GTATGTTTTCAAATGTT T C . . GA G TAG . . . . . . .
blockSeqs : G . AT . . . . GTAG . GG . . . . . . . . . . AGTACACT . AATAAACA A T . CA . TAGTCATC T . . . CA . AA . . . . . . .
blockSeqs : . GAACGCG . ATACACT A T . . . . TA . .
blockSeqs : . GTACACT . ATAAGCA G T .
blockSeqs : ATG . A . . .
blockSeqCons : TTT* GTTAG********** GG****** TC A*** ACAT**************** GATACACT**************************************** AATAAACA******* TACATTGT****** TGTATGGTTTNACTTGTT************* T* CA******** ******
originalCons : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATG-TT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------G-T---GA-GGG-GAGGG-TG-G-G-ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TC-A--TTGCA-A---CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT----G------------T---A-C-------------AC------T--TTCATTTGT-G-A-TAAAC--A--CAGTAG-A-AAAGGTATA-CGGAGTGCATTTTATTTACA-TTGT----TTATA--CTC-G-CA-ATGG-T-----T--A-AA-TGTT-CAATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
finalCons : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATGTTT-TACGAGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATAGTTAG----------GGG-GAGGGGG------ATA-AAAACTCCCGTAAGTTTCTGTCATCCGACA-TCA---TTGCACAT----------------AATA-AT---ACA--TTTT----AATG-TA--CGT--TTGATACACT----------------------------------------TTCATTTGT-GAATAAACA-------GTAG-A-AAAGGTATA-CGGAGTGCATTTTATTACATTGT------TTATA--CTCTGTATGGTTTNACTTGTT-------------AATCCNTT-AGTTCCAACATT-CATCA--------TAGTTT--N---GGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA
Alignments
lowQualScore : 11 1 11 1 11 1 11 1 111 1 1 1 222 111 4444444 1 11 1 1 1 1 1 2222 1111 11 44444444 222 1 1 1 1 1 1 222 1 77777777777777 333333 222 1 1 11 11 1 1 11 333333 111 444444 999999999999999999999999999999 1 1 1 22 222 4444444444444444444 1 1 11 22222 11 111 11 111 333333333 22222 444444444444 1 2222 1 2222222222222222222222222 777777777777777777777777777777 1111 11 66666666666 4444444444444444 2222 444444444444 1 111 1 11 5555555555555555 11111 44444444444444444 1 2222222222222 111111 222222 5555555555555555555555555555 1111 7777777777777777777777777777777777777777777777777777 111111 111 4444444444444444444444444444444444444444444444 3333333333 2222222 222222 111111
lowQualScore : 33 0 33 0 2 3 33 0 2 9 3 33 0 33 2 777 0 3 3 555 888 6666666 7 3 1 88 7 3 3 3 7 3 3 2222 3333 88 33333333 7 333 5 5 5 22 5 5 3 7 7 333 3 6 7 7 11111111111111 444444 555 3 3 7 6 88 88 7 2 3 88 6 888888 999 333333 000000000000000000000000000000 3 3 3 0 00 333 6666666666666666666 3 3 33 11111 99 7 888 88 999 888888888 66666 888888888888 5 22 1 4444 5 1 5555555555555555555555555 777777777777777777777777777777 7 5555 88 33333333333 4444444444444444 1 1111 333333333333 1 0 333 6 0 33 7777777777777777 1 55555 6 1 5 44444444444444444 66 0 5 7777777777777 444444 6 66 66 888 222222 5 0 44 0000000000000000000000000000 5 888 66 0000 4 66 55 9999999999999999999999999999999999999999999999999999 000000 3 3 888888 444 2 3 4 8888 2222222222222222222222222222222222222222222222 1 99999 66 1 55 1 0 4 4444444444 1 0000000 777 0 4 55 2 111111 66 444444
lowQualScore : .. . .. . . . .. . . . . .. . .. . ... . . . ... ... ....... . . . .. . . . . . . . .... .... .. ........ . ... . . . .. . . . . . ... . . . . .............. ...... ... . . . . .. .. . . . .. . ...... ... ...... .............................. . . . . .. ... ................... . . .. ..... .. . ... .. ... ......... ..... ............ . .. . .... . . ......................... .............................. . .... .. ........... ................ . .... ............ . . ... . . .. ................ . ..... . . . ................. .. . . ............. ...... . .. .. ... ...... . . .. ............................ . ... .. .... . .. .. .................................................... ...... . . ...... ... . . . .... .............................................. . ..... .. . .. . . . .......... . ....... ... . . .. . ...... .. ......
lowQualScore : 88 0 88 0 5 2 88 0 5 2 2 22 0 55 5 555 0 3 3 777 333 7777777 3 3 0 33 3 3 3 3 3 3 3 7777 7777 33 77777777 3 333 5 5 5 00 5 0 3 3 3 333 3 7 3 3 77777777777777 777777 000 3 3 3 7 33 33 3 0 3 33 7 333333 000 000000 777777777777777777777777777777 3 3 3 7 77 333 3333333333333333333 3 3 33 77777 33 3 333 55 555 000000000 55555 555555555555 5 00 0 0000 0 0 0000000000000000000000000 777777777777777777777777777777 3 3333 33 33333333333 1111111111111111 0 2222 000000000000 0 0 555 5 0 88 5555555555555555 0 88888 7 0 0 66666666666666666 99 0 0 5555555555555 444444 4 99 99 888 555555 0 8 55 6666666666666666666666666666 0 888 99 6666 4 11 55 8888888888888888888888888888888888888888888888888888 555555 6 6 666666 333 0 6 0 5555 0000000000000000000000000000000000000000000000 0 99999 11 0 44 9 9 4 8888888888 1 1111111 888 1 4 88 2 222222 99 444444
consensus : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTTAAATATGNT---TTACG-AGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------GTTA--G--GGGGAGG---G-G----GATA-AAAACTCCCGTAAGTTTCTGTCATCCGACATC-A--TTGC-A----CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT-----------G----------ATA-------------C-------------AC------TTT-CATTTGTGAAT-AA----A-CAGTAG-A-AAAGGTATA-CGGAGTGCAT-T----TTA-T-TA-CA-TTGT----TTATACTC-C-GT--A----TGGTT----TNA---CTTGTT--AATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT---NGGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
Reference ( family-3337 ) : AGGGCTAT--TCCA-GAAAAA--AAT-GTCTCCTGGGGGCAGAACGCCCATGA--ATTTTA-GGGGTACCACCAA-ATACA-TTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCCA--CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTTTCACGAGTTT-TANCTCGA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GG-AAATAAAAG-A--CCAAAA-TT-TCTA--TTTCAT--TCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGCAAACCTGNNATGATGACGGCAATACCGATATT-TTTTTTAAAAGGTTTTTTAAAATT---ATAT-TTTTTTTTCATGGGTGGCTGGTCATTCAGTTGTTTTTTA------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTCGAAAAGGTC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTGCTAGTAATC--GTTCGATGCGA----AGTACA-CGA-AT-GTA----AACACCCTGCTGTA-GAAAATCCATAGAGACTCAA-CA-CCGTGTCCTCCGTG-TTCCACGAAGT-ATATGTGTA---TTGCCA-A--TACGCATAGAT--GATC-CG-CAGACCCAACTTCCAAAGGGAA-CCG-CCCGCACCCCCCAGGCACACGAAGTATCAGAAATAAATAATAANTACAAATGGAACCCCTATACATGCACACTCTGTTTGCTGTCAGGTTTGTTTTTAATTTAAACATTTCTTTTTTTAAAAATCTCTATANNGTAACANTGCTTCCTTTTTTTTTCTCTCTTCTTTTCTCTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCNTTAGAAATATCGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATGAAAAACAAAAAAAAAAAAAAAAAAAGAATCATTCAATTTGAAT-AACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGATGCTTCGTGCCTGTCTAACGCCTNTTCAGT----AGGAGA------TA--AAAGCTACAANATTT-TAT-TGGACTT-TT--GATAT---C--TTACCG-CCTTNAAATATGTT---TTACG-AGCGAAGATCAAANTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAAATA------GTTA--G--GGGGAGG---G-G----GATA-AAAACTCCCGTAAGTTTCTGTCATCCGACATC-A--TTGC-A----CAT-----------AATA-AT---ACA--TTTT----AATG-TA--CGT--TT-----------G----------ATA-------------C-------------AC------TTT-CATTTGTGAAT-AA----A-CAGTAG-A-AAAGGTATA-CGGAGTGCAT-T----TTA-T-TA-CA-TTGT----TTATACTC-T-GT--A----TGGTT----TNA---CTTGTT--AATCCNTT-AGTTCCAACATT-CATC----A----TAGTTT---NGGAGGG---GGG-GG-GTCTCGGTGAAAAC------TATGTG--AATTTA------GTTTTTT
gi|1 : AGGGCTAT--TCCAAGAAAAAGAAATAGTCTCCTGGGG-CAGAATGCCCATGA--ATTTTA-GGG-TAAC-CCAACATACAATTTAAATTAAAAAATACACCCCTACCAAC---AAATTT-ACATTC-GGA-AACCCCCCCCC---CCACC-AACAAATTAAAAATT---GAT-TTTTCAAAATTT-CACGAGTTT-TAGCTCGA--CATT-GCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGG-TCAGC-GG-AAATAAAAG-AAACCAAAA-TT-TCTA--TTTCAT--T-----TATTT-CAGCAAA---TTTTAAAAA-TCGG-GTTGGCGGATCTGTAAACCTGCAATGATGACGGCAA-AC-GATATT-TTTTTAAAAAGGTTTTTTTAAATT---ATAT-TTTTTTTTCAAGGGTGGCTGGTCATTCAGTTGTTATT-A------------TTATTATT----CCTTAT--GGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTTGTTTT--GT--GAATTGTTTTGAAAAG-TC-GGCGCGTTTTCGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGGCGAGTTCTTTGTTTCTAGTAATC--ATTCGATGCGA-----GTACA------------------------------GAAAATCCATAGAGACTCAA-CA-CTGTGTCCTCCGTG-TTCCATGAAGT-ATATCTGTA---TTGCCATA--TACACATAGAT--AATC-CG-CAGACCCAACTTC-AAAGGGAA-CCGGCCCGC-TCCCCCAGGCACACGAAGTATCAGAAATAAATAATAAATACAAATGGAACCCC---------ACACTCTGTTTGCT-T---GTTTGTTTTTAATTTAAACATTT-------TAAAAATCTCT-TAATGTAACAATGCTTCCTTTTTTTTTCTCTCTTCTTTTCTTTCAAAATTTTCCGGCTTGACATTGATAGCTCTCTTTTCTCGTTAGAAATATCGGCTTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTACATAAAAAACAAAAAAAAAAAAAAAAAAAAAATCATTCAAGTTGAAT-AATAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TCCGTACCAAAAACGACGCTTCGTGTCTGTCTAACGCCTTTTCAAT----AGGAGA------TAAGAAAGCTACAATATTT-TAT-TGGACTT-TT--GATAT---CGTTTACTGTCTTTTGAATATG-T---TTACG-AGCGAAAATCAAATTATC-G-------AT--------A--AA-A-TCTAAAT-------------TCAGATA------GTGA--G--GGGAGGGTGCG-T----GATAGAAAATTCCCGTTAGTTTCTGTCA-ACGACATC-A--TTGCAA----CATG----------AATA-AT---ATA---TCT----AGTG-TA--CGT--TC-----------G-----------TA-------------C-------------AC------TT---GTTTGTG-AT-AAGCATG-CAGTAG-A-AAAGGCAAA-CGGAATGCAT-T----TTATT-TA-TATTTAT----TTATACTC---GCA-A----TGGCTA---AAA---C--GTTACAATCCTCTGAGTTCTAACAGT-CAT-----A----TAGTTG---AGGAGGG---GGG-GG-GTGTCAGTGAAAA----------GTG--AATTTAGGTGAGGTTTTTT
gi|10 : AAGATCAAAATATC-A-------AT--------ATCAC-A-TCAAAAT-------------CTAAACA------GT-A--G--TTGGAGG---G-G----GATA-AAAACCCACATAAAATTCTGTTGTCTGACATCAA--TTGC-AGG--GATTTTTTTTTGGAAATA-AA---CCAACTTTTTTTAAATGTTG--CAT--TTAAA--------G----------ATAT------------C-------------ACATCCCTTTT-CATTT-TTAAT-AC----A-CTGTTG-T-AAAAGTATA-CAGAGT
gi|12 : gggcT-----------G----------A-A-------------C-------------GC------GTT-TATTTGTGAGT-AA----GGCAGTA--A-AGAGGTATA-TAGAGTGC---------TG-C-TAGCA---GT----TGATA-------------------T----TTA---GTCATC--GATTCGA--AGTT---ACACT-CATC----ATATCTAGTTTCA-AGGGAGA---GGG-GG-CTCTTGATAAAGACTACCAGTATGTGTTAACTTA------TTTTTTT
gi|13 : caTG-TA--CGT--TT-----------G----------ATAGTTTTAAATTGTAC-------------AC------TTT-CATTAATGAAT-AA----A-CATTGG-T-AAAGGAATA-CGGAGTGCAT-T----TT-------CA-TTAT----CAATATTC-TCGT--A----TGGTG----TGC---CTTGTT--AATCCATT-AGTTCCAACATTACAGG----G----GAGTGT---GGGGGGG---GGG-GG-gaaaagttaatcgatcttacccctta
gi|14 : aatgatatt--TT-----------G-----------TA-------------C-------------AC------TTTTCATTAATGAATAAA----A-CATTGGTATAAAGGAATATCGGAGTGCATGTGCGATTA-T-TA--A-TTG-------A---TC-C-GT--ATTGGTGGTTTTTCTTAGTCCTTGTT--ATTCCATT-AGTTCC
gi|15 : gtacgatttgatagttttaaaAAGTATGATAAATTATGGAGCGA-GATCAAAACATC-GTTTTCAGAT--------A--AA-AATCTAAGT-------------TCAAATA------GTTATAA--GGGGAGG---G-G----TATA-AAAACTCCCATAGGTTCCTGTCAT
gi|16 : attataaagAAGGCTAT--TCCA-GAAAAA--AAT-GTCTCCAAAGGGCAGAATGCCC-TGA--ATTTTT-GGGGTACCACC-A-ATAAA-TTGAAATTCAAAAACATATCCCTACCAAC---AATTTT-ACAT
gi|17 : AGATCAAAAGATC-G-------ATGTCGGAT-A--AATA-TCTAAAT-------------TCAAATACATGTTGTTA--G--GGAGAGG---G-G----GATA-AAGATTCCCGTAATTCTCTGTCATACGGCA
gi|18 : cgAACAAT-CATG----A----TA-TTC---CAAAGGGCCAGGG-GGTGTCTTGATGAAAAC------TATGTG--AATTTA------GTTTTacgatt
gi|2 : AGGGCTATATTCCA-GAAAAA--AAT-GTTTCTTGGGGGCAGAACACCCATAA--ATTTTA-GGGGTACCACCAA--TACA-TTTAAATAAAAAAATACACCC-TACCAAC---AAATTT-ACATTTTGGA-AAACACCCCCCA--CCA----ACAAATTAAAAATT-------------------TCACGAGTTT-TAACTCAA--CATTTGCTTGTTTTCATATTTTT-GAGGGC-CAACATGACTTAA-AAGAGGATCAGC-GA-AAATAAAAGCA--CCAAAA-TCATCCA--TTTCAT--TTTTCATATTTTTTTTAAGGTTTTTTAAAAattgttcagaaatgacattttgattttacccct
gi|2 : ATATT-TTTTTTAA--GGTTTTTTAAAATT---ATATCTTTTTTTTCATGGGTGGTTGGTCATTCAGTTGTTTTTTGGGGTTTTTTTTGTTATTGTTTTTGCCTTATAAGGTACTAAATTTTAGA-TCAT-TTTAATGCTGCTGTGTT---TT--GT--GAATTGTTTCGAAAAGGTC-GGCACGTTTTTGAGATTTGAAATCCAGTTAGT--GCCCTTTGCT------CTGCCGAGTTCATTGTTGCTAGTAATC--GTTCGAAGCGAGAACAGTACA-CGACATAGTA----AACACCCTACTGTA-GAAAATCCATGGAGACTCAA-CA-CCATGTCCTCCGTG-TTCCACGAAG---TGTGTGTA---TTGC-------------------GATC-TG-CAGACTCAACTT-CAAAGGGAA-C---CCTGCA-CCCCCAGGCACATGA--TATCAGAAATAA--AAT--TTACAAATGGAACCCCTATACATGCACACTCTATTTGCTGTCAGATTTGTTTTTAATTTAAACATTTCTTTTTTT----ATCTCTATACAGTAACATTGCTTCCTTTTTTTTTCTCTC----TTTCTCTCAAAATTTT-CAGCTTGATATTAATAGCTCTCTTTTCTCTTTAAAAATATTGGCTTGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATGTA---GAA------------------------AATCATTCAATTTGAATGAACAATTGTAAAACAGA--AAGAAATCA-----------CGATTAT-------GTA------TTCGTATCAAAAACGATGTTTAGTGCCTGTCTAACGCCTTTTCAAC----AGGAGA------T-----AGCTACAATATTT-TAT-TGGACTTGTT--GATAT---------------TCTAAATATGTT---TTATG-ACCG-AGATCAAATTATCGG-------ATA-------A--AA-A-TCTAAAT-------------TCAAATA------GTGA--G--GGGGAGG---GTGTGT-GATA-AAAAA-CCCGTTAGTTTCTGTCAAACGACATC-A--TT----------------------------------A--TTTT----AGTG-TA--CGT--TC-----------A----------GTA-------------C-------------AC------TTT-CATTTGTAAAT-AA----G-CAGTAG-A-AAAGGCAAA-TGGAATGCAT-T----TTttatatcttttttttcatgggtggttggtcattcagttgttttttggggttttttttgttattgtttttgccttataaggtactaaattttagatcattttaatgctgctgtgttttgtgaattgtttcgaaaaggtcggcacgtttttgagatttgaaatccagttagtgccctttgctctgccgagttcattgttgctagtaatcgttcgaagcgagaacagtacacgacatagtaaacaccctactgtagaaaatccatggagactcaacaccatgtcctccgtgttccacgaagtgtgtgtattgcgatctgcagactcaacttcaaagggaaccctgcacccccaggcacatgatatcagaaataaaatttacaaatggaacccctatacatgcacactctatttgctgtcagatttgtttttaatttaaacatttctttttttatctctatacagtaacattgcttcctttttttttctctctttctctcaaaattttcagcttgatattaatagctctcttttctctttaaaaatattggcttgttggnnnnnnnnnnnnnnnnnnnnnnnnnattgtatgtagaaaatcattcaatttgaatgaacaattgtaaaacagaaagaaatcacgattatgtattcgtatcaaaaacgatgtttagtgcctgtctaacgccttttcaacaggagatagctacaatattttattggacttgttgatattctaaatatgttttatgaccgagatcaaattatcggataaaaatctaaattcaaatagtgagggggagggtgtgtgataaaaaacccgttagtttctgtcaaacgacatcattattttagtgtacgttcagtacactttcatttgtaaataagcagtagaaaaggcaaatggaatgcatttt
gi|3 : agggctatattccagaaaaaaatgtttcttgggggcagaacacccataaattttaggggtaccaccaatacatttaaataaaaaaatacaccctaccaacaaatttacattttggaaaacaccccccaccaacaaattaaaaatttcacgagttttaactcaacatttgcttgttttcatatttttgagggccaacatgacttaaaagaggatcagcgaaaataaaagcaccaaaatcatccatttcatttttcAGGGCTAT--TCCA-GAAAAA--ACT-GTCTCCTGGGGGCAGAACGCCCATGAGAATTTTAAGGGGTACCCACAA-ATACA-TTTAAATTAAAAAATAC--CCCTACCAACCAAAAATTTGACATTC-GGATAACTCACGCTCAAACCACCGAACAAAATAAAAATTTGAAATGTTTTCAAAATTTTCACGAGTTTGTACCTCGAAGCATTTGCTTGTTGTCATATTTTTCGAGGGCGCAACATGACTTAACAAGAAGATCAGCCGGCAAATAAAAG-A--CCAAAAATT-TCTAACTTGCATAATCT---TATTTTCAGCAAA---TTTTAAAAAATCGGTGTTGGCGGATCCGC-AACCTGGCATGATGATGGCAATACCGATATTATTTTTTAAAAGG-TTTTTAAAATTATCATAT-GTTTTTGTCAT-GGTGGCTTG-CATTTAG----TTTTTA------------TTATTA--------TTAT----TACTAAATTTTAGACTCATATTTAATGC-GCTGTGTTGTTTTTAGTTGAAATTG-TTCGAAAAGATCGGGCGCGTTTTCGAGATTTGAAATCCAGTTAGTTGGCCCTCT-CTGGCATGCTGGCGAGTTCTTTGTTGCTAGTCATTCAATTCGATGCG-----AGTACATCAA-ATCGTAATTCAACACTCTGCTGTAGGAAAATCCATAGAGACTCAAGCACCCGTGTCCTCCGTGTTTCCATGAAGTAATATGTGTAAATTTGCCA-AATTACGCATAGATAGGACCGCGACAGACCCAACTTCCAAAGGGAACCCG-CCCGCACCCCCCAGGCAC-CGAAA-ATCAGAA
gi|4 : A------TCCCTACCAACAATTTTACATCGTGCCTATCTAACGTCTGTTCAGT----AGAAAA------TA--A--GCTACAAGGTTGATATATATA-TT-TT--GTTA---------ACCG-TCCTCAAATATGGT---TTACG-AACGAGGATCAAATTATC-A-------GA--------A--AA-A-TCTAAATTCAGAAGTCTTTGTCAAATA------GTAA--GAAGGAAAGG---G-G----TATA-GGAACTCCCGTTAGTT--------------TC-A--TTAC-A----C--------------ATA-AT---ACA--TTTT----AGTG-----------C-----------G----------ATG------------------------------------TT-C---TGTGAAT-AA----A-CAGTGG-T-AAAGGCAAA-CATAGTTCAT-T----TTATT-TA-CA-TTGT----TTATA-TC---GTTAA----TGGCTA---TAA---TGTGAT--AACCCTTT-------AACATT-CGT----------TGGTTT---TAG-------------------GGTG-AAAT------TATGTG--AA--TA------GTTTT
gi|5 : G-AGCGAA-ATCAAAGGATC-G-------ACGTTGGATAA--AA-A-TCTAAAT-------------TCAAATA------GGTA--G--GAGGAGG---G-GTGGGGATA-TAATCTCCCGTAAGTTTCTGTCATCCAATATCGA--TCAC-AAAATCAT-----------GATG-TT---ATA--TTTT----AATG-TA--CGT--TTAATAGATTCAAA----------ATA-------------C-------------AC------TTC-CATTTGTAAAT-AA----A-C---AG-A-AGAGGTATA-CAGAGTGCAT-T----TGA-TATA-CA-TTGTATTATTATAATC---GC--A----TGTTT----TTA---CTTGTC--AATCCATA-AGTCTCAACATT-CATCGTATA----TAGCTTTAGGGGAGGG---GGGTGG-GCCTCGGTGAAAAC------TATGTG--AATGTA------GTTTTTTgttttccttgtttttttattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttggtcactttgaactttaaaatcaatatatagtttgctgcattataatttcccaattaactgtgtcagcaatttgttttcaacttttaaaagaatcaataagctcaaaagtcattaaataaacttccaatttcattttcatgtatataagttaaaacatcacgtaccgacttaataagctcgtgctatgaaccaaggtaccgacgagtggtggaattgcgcgctcgtgtgatgcagagatctgggcatcaaatagatgtgaccgtagtaca
gi|6 : AAGATCGAAGT-TT-G-------AT--------A--AATA-TCTAAAT-------------TCAAATA------GTTA--G--GGGGAGG---GTG----GGTA-AAAACTCCTGCAAGTTTCTGTCATCTGACAGT----TTAC-A----CAT-----------AATATAT---ACA--TTTT----AATG-TA--TATAGTT-----------GTTAAATACCAGTA-------------C-------------AC------TTT-GA----TGAAT-AA----A-CAGTAG-----AGGTATA-CAGAGTATAT-T----TTA-T-T--TA-CTA-----TTATACT--T-GT--A----TGTTT----TCA---AATGTT--AATCCATT-AGTTTCAACATT-CATC----AC---TAGTTT---TAGAGGA---ATG-AG-ATCTTGGTGAAAACTA----TATGTG--AATTTA------GTTTTTTtctttcagacattgaacttttgac
gi|7 : gagagattaaTGTCATCCAACATC-AGATCGC-A----CAT-----------AATG-ATCTTACA--TTTT----AATG-TA--CAT--TT-----------A----------ATAGTTTTAAAATA--C-------------AC------TTT-CATTTGTGAAT-AA----A-CAATAG-A-AAAGGTATA-CAGAGTGCA--T----TTA-T-CA------------TTCTACTC-T-GC--A----TGGTT----TAA---ATTGTT--AATCCTTT-AGTTCCATCTGT-CATC----A----TA--TT---AA--------------------AGTGAAAAC------TATATG--AATTTA------GTTTTTTgtcagacattgaacttttgatctcgccccctaag
gi|8 : -AT---ACA--TTTT----GATA-TATACGT--TT-----------G----------ATA-------------CCTCTGGTTATTAAAT------TTT-CATTCGTGAAT-A--------GGTAA---------ATA-TGGAGTGGAT-C----TTA-T-T--CA-TTGT-------TACTCAC-GT--A----CAGTA----TAA---CTACTT--AATCCTTC-AGTTCCTACATT-CATC----AAATTTAGTTT---T--AGGG---GAG-GG-GTCTCGGTGAAAAC------TCTGTG--AATCTA------ATTTTTTgttagacattaaacttttgacctcgccc
gi|9 : AAGAATCATTAAAT--AAAT-A----CTGTAAAACAGAGAAAGAAATCATCTGTAAGTCACAAGTATTTCCCGTGTACATACATCCGTATCAAAAATGATGCTACATCTCTGTCCAACTCCCATTCAGTCAAAAAAAGACATAATTA--AAAGCTATCGGACTT-AAT---GGTTT-TTAAAATATTTGT--TTACCA-CCTTAAAACATTTT---ATACA-AGgtcagacattgaacttttgatcttgacccctaaa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGAGAAGAACATTGCTACATAGAACATTTCTGATATTACAGAAACTTATGAAAAATGTTCAAGTTAAACAATAACTGAATGCAAAATCACATATATACGAGAAGTAAAAGACCGACGTCGGATTAAAAAGATCTTAATTCAAAAAGATAGCAGGATGAGTGGTATATATGGCCATCCAACATCGATTACACGA
Unaligned ( gi|19 ): AATTAAAGGATTGGGTGTCTGGATGAAATCTATGTATCTAAATTAAATCTTTTATCAGACATTGAACTTGTCATCTTGCCCTTT
Unaligned ( gi|20 ): AAAGACATTTAAGTGAATCTGACAACAATTGCTATGGAGTTAAAAAAATCGGTTGCAATAG
Unaligned ( gi|21 ): ACAACCTGTAAATTTAAGTTCTTTGTCAGACATTGAACTTTTGATCTTGCCCCTCACT
Unaligned ( gi|22 ): TGTGGATTTAGTTTTTTTGTCACTTTGAACTTCTGATCTTGCCCCTTAA
Unaligned ( gi|23 ): AAGATTCATTTAAATGCATCCGAGAAGAATCAATGTAAAACT
Unaligned ( gi|24 ): TTGGTCAGACATTGAACTTTTGAGCTTGCCCCTGA