lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 333 1 2 3333 8888888 5555555555555555 444444444444444 1 1111 111 111 11 1 22 2222 11 2 222 2 2 999999999999999999999999999999999999999999999999999999 22222222222222 4444444 22 444444444 5555555555555555555555555555555 111 44444 111 11 3333333333333 11 333333333333333 3333 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 33 3333333333333 88888888888888
lowQualScore : 3 4 0 66 111 2 7 4 0 7777 3 1111111 4 0000000000000000 222222222222222 0 9999 777 777 2 8 88 6 8 8 8 0 33 8 6666 11 6 777 6 6 3 6 6 444444444444444444444444444444444444444444444444444444 11111111111111 6 0 999 4444444 33 00 000000000 6 5555555555555555555555555555555 0 555 666 5 99999 5 000 11 888 7777777777777 3 00 999999999999999 5 6666 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 88 2 55 666 3 00 55 55 2 8888888888888 4 4 44 22222222222222
lowQualScore : . . . .. ... . . . . .... . ....... . ................ ............... . .... ... ... . . .. . . . . . .. . .... .. . ... . . . . . ...................................................... .............. . . ... ....... .. .. ......... . ............................... . ... ... . ..... . ... .. ... ............. . .. ............... . .... ......................................................................................................................................................................................... ... .. . .. ... . .. .. .. . ............. . . .. ..............
lowQualScore : 0 0 0 55 000 5 0 0 0 5555 0 5555555 0 3333333333333333 333333333333333 0 5555 555 000 0 2 88 0 0 0 0 8 44 0 0000 00 7 555 7 7 3 7 7 222222222222222222222222222222222222222222222222222222 66666666666666 2 8 222 6666666 33 00 555555555 7 8888888888888888888888888888888 1 444 000 0 55555 0 000 22 888 3333333333333 8 44 111111111111111 0 0000 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 888 44 3 00 444 6 88 00 00 8 3333333333333 0 5 77 22222222222222
consensus : TTTGGAAAANTAAGTNCATAC-TTTNNGCACAATAANATCATTCNATTTCGGAAAAATACCTGCCNAATTTAAAAAGCNAGGACACTC-ACTGANTCTCGCAAAATTCAGAATTAGTAATCACTGCC-TACG-GGTAG--AAACAGGCAGATA-TGAA-AG-AAAA---ATAAA--TAACTATTGGTAAAAA-TGAAATTCT-T-CCTAGGTGT-T-GAAAGAATTTGTCA--ATACTGTACCTCAG-GTTC-AACAGAAGA-TGAATTACA-TTT-TTACTCGA-ATGT--CGC--TATACAACAA--TTTTAGAGGAGAGTT-TT-TAAAC-ANGAATTTTT-----AAAA-----CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTG-TTAA---CATG-GATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TAT-TTA-A-TTGTAAAT-T-TCAATACAA-GAA---AACANA--ATA---CTTGTNGAATATAG-CCATGTCT-AGT-------TATATT-TAG----ACTGCAAC--AT--AA-ATT-TT-ATGCATGTTC-----T---ACA-TG--CGNC-ACAT-T--------A-AT--TAT-TG-T-TATTTTATA---TANTTGG-ATGTT---TTTGATGGCTAAC----TCTCTG-TTC-ATCATG-TCATG-CAACTCAGTGATATTTTCTC---TTTGTTT-AT-----C---CTTTGTTTAATGTGATTTTGGACA--C---T-AT--GT--AT--CATGATGCTC----C-TN----TGT-GGGCCCAAA-T-------A------TAAATATTCTAT
Reference ( gi|2 ) : TTTGGAAAATTAAGTACATACTTTTCAGCAC-A-AAGATCTTTCAATTTC-GAAAAATACCT---CAATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-ATTAGT-ATCACTGTCATACG-GGTAG--AAACAGGCAGATA-TGAA-AG-AAAA---ATAAA--TAGCCATTGGT-AAAA-TGAAATTCT-T-CCTAGATGT-T-GAAAGATTTGGTCA--ATA-TGT-CCTCAG-GTTC-AACAGAAGACTGAATTACA-TTT-TTACTCGATATAT--CAC-ATATACAACAA--TTTTAGAGGAGAGTTGTTGTAAAC-ATGAATTTTT-----AAAA-----CCTATCCAA-ACCTAGCACTCACTTAAACAATGGCTGATCTG-TTA----CATG-GATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCATTC-A-TTATGCCAA-TACATTACA-TTGTAAAT-C-TCAATACAA-GAA---AACACA--ATG---CTTGTTGAATATAA-TCATGTCT-GTT-------TAT-TT-TAGA---ACTGCAA---AT--AG-ATTCTT-ATGC-TGTT------T---ACA-TG--CGGC-ACAT-T--------A-AT--CAT-TG-T-TTTTTTACA---TATTTGA-ATATT---TTTGATGACTAAC-A--TCTCTGCTTCTAGCATG-TC-TGCCAACTCAGTGATAATTTCTCG--TTTGTTT-AT-----C---CTTTGTTTAATGTGATTTTGGACA--C---T-ATA-GT--AT--CATGATGCT-----C-TA----TGT-GGGTCCAAA-T-------G------TAAATATTCTATT
gi|1 : TTTGGAAAATTAAATTCATAC-TTTAAGTAC-ATAATATCATTCTATTTT-GAAAAATACCTGCCCAATTTAAAAAGCCAGGATACTC-ACTAAATTCAGCA---ATC-----CAGTAATCACTGCTCTACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAA---ATAA----AACTATTGGT-AAAATTGAGCTTCT-T-CCTAGGTCG-T-GAGAGAGTGTGTCA--ATACTGTACCTCAA-GTTC-AACATAAGAC-GAATTACA-TTT-TAACTCGA-ATGT--TCT-CTATAAAATAATTTTTTAGAGGAGAGTTTTTG--AAT-AAGA---TTT-----AAAAAAACCCTTCTCCAATTCCTAGCAAT-ATTT-AACAAT-GCTGATTTGTTTG----CATG-GATT------------ATGAAA--ATCCT-----GAATTTGCTGTTCAA-TCATGCCAA-TATTTTG-A-TCGTAAAT-T-ACAATACA---AC---AAC-----ATG---TACATAGAATATAG-CCATGTCT-AGT-------TATATT-TAG----ACTGCAAC--AT-------------TGCATGTTC-----T---ACA-T-----GC-ATATAT--------ATATGCTAT-TGAA-TATTTCATA---TAATTG--GTATA---TTTGATGGCTAACTAACTTTCTG-TTC-ATCATG-TCATG-CAACT--GTTCT--TTTCTCG--TTTG-TT-AT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGT-ATACAT--AT--CATGATGCT-----C-CA----
gi|7 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTTTGGAAAAGTAAGTACATAC-TTTCTGCACAA-AAGATCATTCAATTTCGGAAAAATACCT---GAATTTAAAAAGCAAGGACA-------GATTCTCGCAAAATTCAGAATTAGTAATCACTGTC-TACG-GGTAG--AAACAGGCAGATATTGAA-AG-AAAA---ATAAAATTAGCAA-TGGTAAAAA-TGAAATTCT-T-CCTAGATG--T-GAAAGAATTTGTCAACACA-TGTACCTCAG-GTTCAAACAGAAAGATGAATTACATTTT-TTACCGAATGTATTCCACTATGTAC--CAA--GTTTA
gi|4 : acttttgggaaaatgttcgtacctgctatatgcaaggtCTCGCAAAATTCAGAATTAGTAATCACTG-----CG-TCT------ACAGGCAGATA-TGAA-AG-AAAATTTTTAAA--TAACTA-TGGTAAAAA-TGAAATACT-T-CCTAGGTG--T-GAAAGAATTTGTCA--ATACTGTACCTCAG-GTTC-AACAGAAGA-TGAATTACATTTT-TTACTCGA-ATGT--CCT-CTATACAACAA--TTTTAAAGGAGAGTT-TT-TAAAC-AATATTTTTTTTTAAAAAA-----ACTATCCAA-A------AC-------AAC-ATGGATAATCT-----------TGAGATT--------------------A--CC-------GTTCA-------A-TTATGGTAA-TAC-TT-CA-TTGTAAAT-T-TCAATACAC-GAA---AACAAC--ATA---TTTGTTGAATATAAGGCATGTCT-AGT-------TATATT-TAG----ACTGCAACATAT--AA-A---TT-ATGCATGTTC-----T---ACA-TG--C-TC-ATAT------------AT--TAT-TG-T-
gi|3 : A-TGAA--T-AAAA---ATTAA--TAACTAT-GGT-TAAA-TGAAATTCTATACCTAGGTGT-TAGAGAGCCT--GTCA--ATACTGT-A-TCAATGTTC-AACAGA----TGATTTGCA-TTTATTACTCGA-ATGTT-CGC--TATATAATAA--TTCTAGAGG-------------AC-AC---TTTTT-----AAAA-----CCTTTTCAA-AACTAGCAAT-GCTT-AACAAT-GCTGATCTG---A----CATG-GATTATGTCAA-----GTG--------------------TACTGTTCTA-TTATGCCAA-TAT-TTA-A-TTGTAAAT-T-TCAATACA---AA---AACACAACATA---TATGTGCAACATAG-TTATGTCT-GGT-------TGTATT-TAG----ATTGCAGC--AT---G-ATT-TA-ATAC---TC------T---GCA-TG--TACT-ACATGT--------A-----CATATA-T-TTGTGTGTATTTTATATGA-TTGTTAGGTTTGAGGGCTAAT----TCTCTG--TTTATCATGCTA-TG-CAA--CAGTA----------------------------C---CTTTG-----TGTGATTTTGGACT--G---T-AT--GC--AT--CATAATTCTC----C-TA-----AT-TGGTTGAA------------------AAATATTatactttt
gi|8 : -AAAA-TGAAATTAT-T-CC--GATGTGT-GAAAGAATTTGTCG--ATACTGT-C---AG-GTTC-AA-AAAAGA-TAAATTACAATTT-TTACTTGA-ATGC--CG-----------AA--TTTTA----------------AAC--TAGATTTTT-----AAAG-----CCTTTCCAA-ACCTAATAC-AACTTAAA-AGTG-CTGATCCG-TTAA---TATG-GATTATATCAA-----ATGAAA--A--TCAT---GAGTTTACCGTTCAA-TTATGCCAA-AAT-TTA-A-TTTT-AAT-C-TCGATACAA-GAACACAACACA--------CTTATAGAATAT-A-CCATGCCT-AGT-------CATATT-TAG
gi|11 : atgata-TGTACCTCAT-GTTC-A-CAGAAGA-TGAAT-GCACTTT-TTACTCGA-ATGT--C-C-AGTGACTACAA--TTTTATAGGAGAGTT-TT-TAAACAATG-ATTTTT-------AA-----CCTATCC-A-ACCTAGCACT-ACTTA
gi|5 : AATG-CTGATCT--TTAACAACATG-GAT-ATGTCAACACCTATGAAA--A--ACTCGCAGAGTT----ACTC-A-TT----CAA-TAC-TTATAATTGTAAATGCGTCAATACAATGAA---AAC-TA--ATATACCTTGTTGAATAAAG-TCATGTCA-GTTA------TA--TC-TAGA---GCTGCAAC--ATTAAA-GTTCTT-ATGCATGTTCTGATAT---ACATTG--TGAG-AT-T-T--------A-ATACTAT-TG-TATATTTTAC-------TTAG-ATG-------TGAT--TTAAC-C--TCTCTG-TTC-AGCATG-TCATGGCAAATCAGTGATATGTTCTCAGCTTTGTTT-ATGTTTAC---C-TTGTT--ATGTTGGCTTGG-CAAGC---T-ACA-GC--ATTGCCTGAC-CTG----A-TA----TGTAGGGCTCAAA-
gi|6 : ATCTG-TTAA---CATG-GATTATGTCAA-----ATGGAATTC--CT-----GAGTTTACCATTC-AATTATGCCAA-TAT-CTA-A-TTGTAAAT-T-GCAATACAA-GAA---AACAGC--ATA---CTTGTAGAATATAG-TCGTGTCTAGTTACTAGTATAT-TTATAG----ACTGCAAC--AT--AATATTATT-ATGCATGTTC-----T---ACA-TG--C-GC-ATATATATACTACAA-ATA-TAT-TG-TATATTCTATA---TAATTGGTATATT---TT--ATGGCTAAC----TCCCTG-TTC-ATCATG-TCATG-CAACTCAGTGTTATTTTCTCT--TTTG-TT-AT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C---T-AT--GT--AT--CATGTTGCTGAGTCC-TC----TTT-GGGCCCAAA-T-------cttggtgactgggttgaataaatat
gi|17 : atgctgattcaGTTTACCGTTC-AATTATGCCAA-TAT-TTA-A-TTGTAAAT-T-TTAACACAA-GAA---AACA-A--ATtggttgaataaata
gi|9 : tacttaacaatgctgatctgt-A-TTATGCCAAGTAC-TTA-A-TTGTAAAT-C-TCAATACAA-GAA---AACATA---------CTGTTTAATATAACTCATGTCT-AGT-------TATATT-TAGATAGACTACAAC--AT--AA-ATTCTTAATGCATGTT------CTAAACA-TG--CGA--ACAA-T--------T-AT--AAC-TA-T-GTTTa
gi|14 : TTGAATATAG-CCATGTCT-AGT-------TATATT-TAG----ACTGCAA---AC--TA-ATTATT-ATGCATGTTC-----T---ACA-TGCCCAACTACTA-T--------A-AT--AAT-TG-T-T-------A---TATTTGA-gt
gi|12 : ATG-CCATGC-AACT--GTTAT--TTTCTCT--TTTGTT--AT-----C---CTTTGTTTA-TGTGATTTTGGACA--C---T-ATATGT--AT--CATGATGCTC----C-TGAGACTGC-GGGCCCAAATT-------GGATGACTAAATATT
gi|10 : ACTCAG-GATATTTTCT--------TTT-GT-----C---CTTTATTTA-TGCGATTTTG-ACC--C---TGAT--GT--AT---ATGAT-CT-----C--A----TGT-GGGCCCAAA-TTGGTGA-A------TAAATACTCT
gi|15 : aattggtaattttttgtacctcgggcccatgatgcTTTCT----TTT-TTC-A------C---CTTTGTTTA-TGTGAATT-GGACA--C---T-AT--GA--AT--TATGATGCTC----C-TC----TAT-GGGCTCAAC-TTGGTTGAA------TAAATATTtc
gi|13 : gcttttgTTCTTT--TTTATTTTAT-----C---ATTTGTTT-ATGTAATGT-----A--T---C-ATG-----AT--GATGATGCTC----C-TC----TGG-GGGCCCAAA-T-------
gi|16 : atgccatgcaactgtttttctcttcT-AT-----C---CTTTGTTTA-TGTGATGTTGAACA--C---T-AT--GT--AT--CATGATGCTC----C-TC----TGT-GGGCCCAAA-T-------tgtttgaataaatagt
gi|18 : TTTGTTTA-TGTGATTTTGGACA--C---T-AT--GT--AT--CATTATGGTC----C-TA----TGT-GGGCCCAAA-TTGGTTGAA------TAAATATTATATtagttgaatgaatatttcta
gi|19 : aGACA--C---T-TT--GTCCAT--CATAATACT-----CCTC----AGT-GGGCCCAAC-T-------GGTTGAATAAATATTCTA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TGTCTTGCTATATTTAGACTGCAGCATAATTATTATGTTCTACATGCACA
Unaligned ( gi|21 ): TGTGGGCCCAAATTGGTTGAATAATATTCTATTCTA
Alignments
lowQualScore : 111111111111
lowQualScore : 111 33 2 3333 4444444444 1 1 22 1 11 11 111 111 1 11 2 22222222 111111 2222 11111 11111 11 1 11 1111 11111 3333333333333 1 11 111 111111 1111 33333333333333333333 11111 5555555555555555555555 11 222 1 11 2222 11111 1 1111 22 3333333333333333333 11111 22 11111 000000000000
lowQualScore : 1 1 555 11 1 1 3 4444 1 7777777777 0 3 0 3 33 0 22 33 2 8 88 8 444 111 3 7 1 6 6 00 0 5 55 5 5 5 5 2 5 5 5 55555555 5 1 77 5 3 111111 0000 66666 66666 1 6 2 00 1 33 0 1111 5 44444 3 4444444444444 33 3 8 4 666 00 66 4 888 88888 1 4 4 111111 4444 4 4 44444444444444444444 77777 4 8888888888888888888888 11 111 0 1 1 0 33 0000 5 55555 3 6 6 0000 5 5 8 00 1111111111111111111 4 00000 777 44 1 44 22222 3 6 44 44 1 7777 88888 4 777777777777 4
lowQualScore : . . ... .. . . . .... . .......... . . . . .. . .. .. . . .. . ... ... . . . . . .. . . .. . . . . . . . . ........ . . .. . . ...... .... ..... ..... . . . .. . .. . .... . ..... . ............. .. . . . ... .. .. . ... ..... . . . ...... .... . . .................... ..... . ...................... .. ... . . . . .. .... . ..... . . . .... . . . .. ................... . ..... ... .. . .. ..... . . .. .. . .... ..... . ............ .
lowQualScore : 0 0 333 00 0 0 3 0000 0 0000000000 0 2 0 2 88 0 55 88 5 0 88 0 000 888 8 3 7 7 7 55 3 7 77 7 7 7 7 9 7 7 7 33333333 7 7 99 2 2 888888 8888 77777 77777 0 7 5 22 3 33 1 7777 0 33333 6 0000000000000 66 3 9 4 666 66 11 4 666 33333 0 4 4 555555 0000 0 4 99999999999999999999 22222 4 9999999999999999999999 99 111 0 7 0 8 66 0000 6 22222 3 7 7 6666 0 0 8 11 9999999999999999999 0 00000 000 22 3 66 99999 3 7 66 66 8 1111 77777 0 777777777777 4
consensus : TTTGGAAAATTAAGTACATACTTTNC-GCACAA-AAGATCATTCAATTTCG-AAAAATACCTG--CAATTTAAAAAGCAAGGACA-TC-A-TGATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTACA-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAAGA-TTTTT-----AAAA-----CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAACANCATA---CTTGTNGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-GC---GACATAT-T--------A-AT--TATTG-TATAT-TTTATATAATTGG-ATATT---TTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----AT-G-CAACTCAGTG-TATTTTCT---C-TT---------TNTTT-AT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----CTGT-GGGCCCAAATTGGTTGAA----TAAATA-TTCTAT
Reference ( family-328 ) : TTTGGAAAANTAAGTNCATACTTTNN-GCACAATAANATCATTCNATTTCGGAAAAATACCTGCCNAATTTAAAAAGCNAGGACACTC-ACTGANTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTACA-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACANGAATTTTT-----AAAA-----CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-T-TTA--ATTGTAAATT--TCAATACAA-GAAAACANAATA---CTTGTNGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-GC---GNCACAT-T--------A-AT--TATTG-T-TAT-TTTATATANTTGG-ATGTT---TTTGATGG----CTAAC-TCTCTG-TTC-ATCATGTC----AT-G-CAACTCAGTGATATTTTCT---C-TT---------TGTTT-AT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----NTGT-GGGCCCAAAT-------A----TAAATA-TTCTAT
gi|1 : TTTGGAAAATTAAATTCATACTTTAA-GTACA-TAATATCATTCTATTTTG-AAAAATACCTGCCCAATTTAAAAAGCCAGGATACTC-ACT----------AAATTCAGCAATCCAGTAATCACTGCT-C-TACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAAAT---AAA----ACTATTGGTAAAATTGAGCTTCT-T-CCTAGGTCGTGAGAGAGTGTGTCAATAC-TGTACCTCAA-GTTC-AACAT-AAGA-CGAATTACA-TTT-TAACTCGA-ATGTT----CTC-TAT-AAAATAATTTTTTAGAGGAGAGTT-TT-TGAATAAGA---TTT-----AAAAAAACCCTTCTCCAATTCCTAGCAAT-ATTT-AACAAT-GCTGATTTGT--TTGCATGGATT------------ATGAAA--ATCCT-----GAATTTGCTGTTCAA-TCATGCCAA-TATT-TTG--ATCGTAAATT--ACAATACA---ACAACAT-GTA---C--ATAGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--------------------TGCATGTTCT-----ACAT-GC----ATATATAT--------ATGC--TATTGAA-TAT-TTCATATAATTGG--TATA---TTTGATGGCTAACTAAC-TTTCTG-TTC-ATCATGTC----AT-G-CAACT--GT--TCTTTTCT---CGTT---------TG-TT-AT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGTAT-AC-AT--AT--CATGATGC----TCC
gi|10 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTGG-----TAAT-TTTTTG-TAC-CTCGGGCCCATGAT-G-CA-CTCAG-GATATTTTCT------------------TTT-GT-----C---CTTTATTTA-TGCGATTTTG-ACC--C-----TGAT-GT--AT---ATGAT-C----TC------ATGT-GGGCCCAAATTGGTGA-A----TAAATA-CTCTa
gi|11 : aat-TGTACCTCAT-GTTC-A-CAG-AAGA-TGAA-TGCACTTT-TTACTCGA-ATG-T----C-C-AGTGACTACAA--TTTTATAGGAGAGTT-TT-TAAACAATGATTTTT-------AA-----CCTATCC-A-ACCTAGCACT-ACTTAtc
gi|12 : ATGCC----AT-G-CAACT--GT--TATTTTCT---C-TT---------TTGTT-AT-----C---CTTTGTTT-ATGTGATTTTGGACA--CTA---T-AT-GT--AT--CATGATGC----TCCTGAGACTGC-GGGCCCAAATTGG----ATGACTAAATA-TT
gi|13 : ATGCC----AT-G-CAACT--GT----TTTTCT---C-TTCTTCTTTTTTATTTTAT-----C---ATTTGTTTA-TGTAATGT-----A--T-----C-AT-G---AT--GATGATGC----TCCT----CTGG-GGGCCCAAATTGTTTGAA----TAAATA-
gi|14 : TTGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAAACT--AA-TTA-TT--A------TGCATGTTCT-----ACAT-GCCCAACTACTA-T--------A-AT--AATTG-T-TATATTTgt
gi|15 : TTGTTT---C-TT---------TTTTC-A------C---CTTTGTTTA-TGTGAATT-GGACA--C-----T-AT-GA--AT--TATGATGC----TCCT----CTAT-GGGCTCAACTTGGTTGAA----TAAATA-TTga
gi|16 : gcttT-AT-----C---CTTTGTTTA-TGTGATGTTGAACA--C-----T-AT-GT--AT--CATGATGC----TCCT----CTGT-GGGCCCAAATTAGTTGAA----TGAATATTTCTA
gi|17 : GTTTACCGTTC-AATTATGCCAA-TA-T-TTA--ATTGTAAATT--TTAACACAA-GAAAACA-AATA---
gi|18 : tacttaacaatgctgatctgtTTTGTTTA-TGTGATTTTGGACA--C-----T-AT-GT--AT--CATTATGG----TCCT----ATGT-GGGCCCAAATTGGTTGAA----TAAATA-TTATAT
gi|19 : aGACA--C-----T-TT-GTCCAT--CATAATAC----TCCT----CAGT-GGGCCCAACTGGTTGA-A----TAAATA-TTCTA
gi|2 : tTTTGGAAAATTAAGTACATACTTTTCAGCACAA--AGATCTTTCAATTTCG-AAAAATACCT---CAATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-A-TT-AGTA-TCACTGT--CATACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAGCCATTGGTAAAA-TGAAATTCT-T-CCTAGATGTTGAAAGATTTGGTCAATA--TGT-CCTCAG-GTTC-AACAG-AAGACTGAATTACA-TTT-TTACTCGATATA-T----CACATAT-ACAACAA--TTTTAGAGGAGAGTTGTTGTAAACATGAATTTTT-----AAAA-----CCTATCCAA-ACCTAGCACTCACTTAAACAATGGCTGATCTGT--T-ACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCATTC-A-TTATGCCAA-TA-CATTAC-ATTGTAAATC--TCAATACAA-GAAAACACAATG---CTTGTTGAATAT-AAT-CATGTCTGTT------TAT-TT----TAGAA-CTGCAA-AT--AG-ATTCTT--A------TGC-TGTT-T-----ACAT-GC---GGCACAT-T--------A-AT--CATTG-T-TTT-TTTACATATTTGA-ATATT---TTTGATGA----CTAACATCTCTGCTTCTAGCATGTC-----T-GCCAACTCAGTGATAATTTCT---CGTT---------TGTTT-AT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-ATAGT--AT--CATGATGC----T-CT----ATGT-GGGTCCAAAT-------G----TAAATA-TTCTAT
gi|20 : TGTCTTGC------TATATT----TAG-A-CTGCAGCAT--AA-----TT--A------T-TATGTTCT-----ACAT-GC---t
gi|3 : A-TGAA--TAAAAA-T---TAA--TAACTAT-GGTTAAA-TGAAATTCTATACCTAGGTGTT-AGAGAGCCTGTCAATAC-TGTA--TCAATGTTC-AACAG-ATGA-T---TTGCA-TTTATTACTCGA-ATG-TT---CGC-TAT-ATAATAA--TTCTAGAGG-------------ACAC---TTTTT-----AAAA-----CCTTTTCAA-AACTAGCAAT-GCTT-AACAAT-GCTGATCTG-----ACATGGATTATGTCAA-----GTG--------------------TACTGTTCTA-TTATGCCAA-TA-T-TTA--ATTGTAAATT--TCAATACAA-AAACACAACATA---TATGTGCAACAT-AGT-TATGTCTGGT------TGTATT----TAG-A-TTGCAGCAT--GA---T-TT--AATACTCTGCATGTACT-----ACAT-GT----ACATAT------------AT--TTGTG-TGTAT-TTTATATGAT-----TGTTAGGTTTGAGGG----CTAAT-TCTCTG-TTT-ATCATGCT----AT-G-CAA--CAGTA--------------------------------------C---CTTTG-----TGTGATTTTGGACT--G-----T-AT-GC--AT--CATAATTC----TCCT----aca
gi|4 : CTCGCAAAATTCAG-AATT-AGTAATCACTGCGTC-TAC-------------AGGCAGATA-TGAA-AGAAAAT-TTTTAAA--TAACTAT-GGTAAAAATGAAATACT-T-CCTAGGTGT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTACATTTT-TTACTCGA-ATG-TC---CTC-TAT-ACAACAA--TTTTAAAGGAGAGTT-TT-TAAACAATATTTTTTTTTAAAAAA-----ACTATCCAA-A------AC-------AAC-ATGGATAATC--T--TGA----GATT--------------------A--CC-------GTTCA-------A-TTATGGTAA-TA-C-TTC--ATTGTAAATT--TCAATACAC-GAAAACAACATA---TTTGTTGAATATAAGG-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AT-AAA-TT--A------TGCATGTTCT-----ACAT-GC----TCATAT------------AT--TATTG-TATAC-TTTaattggttgaaaaatatt
gi|5 : AATG-CTGATCTTTAACAACATGGAT-ATGTCAACACCTATGAAA--A--ACTCGCAGAGTT-AC---TC-A-TT----CAA-TA-C-TTATAATTGTAAATGCGTCAATACAATGAAAAC-TAATATACCTTGTTGAATAA-AGT-CATGTC-AGT------TATATC----TAG-AGCTGCAACATTAAA-GTTCTT--A------TGCATGTTCTGATATACATTGT---GAGAT-T-T--------A-ATACTATTG-TATAT-TTTA----CTTAG-ATGT-------GAT------TTAACCTCTCTG-TTC-AGCATGTC----ATGG-CAAATCAGTGATATGTTCTCAGC-TT---------TGTTT-ATGTTTAC---C-TTGTT--ATGTTGGCTTGG-CAAGC-----T-ACAGC--ATTGCCTGAC-C----TGAT----ATGTAGGGCTCAAAt
gi|6 : ATCTGT--TAACATGGATTATGTCAA-----ATGGAATTC--CT-----GAGTTTACCATTC-AATTATGCCAA-TA-T-CTA--ATTGTAAATT--GCAATACAA-GAAAACAGCATA---CTTGTAGAATAT-AGT-CGTGTCTAGTTACTAGTATATTTA--TAG-A-CTGCAACAT--AATATTATT--A------TGCATGTTCT-----ACAT-GC---G-CATATATATACTACAA-ATA-TATTG-TATAT-TCTATATAATTGGTATATT---TT--ATGG----CTAAC-TCCCTG-TTC-ATCATGTC----AT-G-CAACTCAGTGTTATTTTCT---C-TT---------TTGTT-AT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C-----T-AT-GT--AT--CATGTTGCTGAGTCCT----CTTT-GGGCCCAAATTGGTTGAA----TAAATA-cttggtgactgggttgaataaatat
gi|7 : atgctgattcaTTTGGAAAAGTAAGTACATACTTTCT-GCACAA-AAGATCATTCAATTTCGGAAAAATACCTG---AATTTAAAAAGCAAGGACA-------GATTCTCGCAAAATTCAG-AATT-AGTAATCACTGT--C-TACG-GGTAG--AAACAGGCAGATATTGAA-AGAAAAA-T---AAAATTAGC-AATGGTAAAAATGAAATTCT-T-CCTAGATG-TGAAAGAATTTGTCAACACATGTACCTCAG-GTTCAAACAGAAAGA-TGAATTACATTTT-TTAC-CGA-ATG-TATTCCAC-TAT-GTACCAA--GTTTA
gi|8 : acttttgggaaaatgttcgtacctgctatatgcaaggtTGATAAAAATGAAATTAT-T-CCGATGTGT-GAAAGAATTTGTCGATAC-TGT----CAG-GTTC-AA-AA-AAGA-TAAATTACAATTT-TTACTTGA-ATG-C----CG-----------AA--TTTTA----------------AACTAGA-TTTTT-----AAAG-----CCTTTCCAA-ACCTAATACA-ACTTAAA-AGTG-CTGATCCGT--TAATATGGATTATATCAA-----ATGAAA--A--TCAT---GAGTTTACCGTTCAA-TTATGCCAA-AA-T-TTA--ATTTT-AATC--TCGATACAA-GAACACAACACA---CTTATAGAATAT-A-C-CATGCCTAGT------CATATT----TAG-
gi|9 : a-A-TTATGCCAAGTA-C-TTA--ATTGTAAATC--TCAATACAA-GAAAAC---ATA---C-TGTTTAATAT-AACTCATGTCTAGT------TATATTTAGATAG-A-CTACAACAT--AA-ATT-CTTAA------TGCATGTTCTAA---ACAT-GC---GA-AC------------A-AT--TATAA-C-TATGTTTGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TGTGGGCCCAAATTGGTTGAATAATATTCTATTCTA
Alignments
lowQualScore : 111 1 3333 88888888 1 1 22 1 11 11 111 111 1 11 1 22222222 11 111111 111 11 1 1 1111 11111 3333333333333 1 11 111111 1111 33333333333333333333 11111 33333333333333333333 11 11 1 11111 1 1111 1 2222 333333333333333333 11111 22 11111 111111 111111111
lowQualScore : 888 7 3 1111 44444444 0 3 0 3 33 0 22 33 2 8 88 8 444 111 3 7 1 6 6 00 0 5 22 5 5 5 5 5 7 5 5 5 55555555 5 1 1 77 1 3 6 6 00 6 999999 111 1 6 2 00 1 5 0 1111 5 44444 3 4444444444444 33 3 8 4 777 00 66 4 4 22 88 1 4 4 111111 4444 4 4 44444444444444444444 77777 4 66 44444444444444444444 33 5 0 0 1 88 0 5 55555 3 6 6 0000 0 8 1111 000000000000000000 00000 777 44 1 44 22222 3 6 44 44 1 7777 222222 3 333333333 3
lowQualScore : ... . . .... ........ . . . . .. . .. .. . . .. . ... ... . . . . . .. . . .. . . . . . . . . . ........ . . . .. . . . . .. . ...... ... . . . .. . . . .... . ..... . ............. .. . . . ... .. .. . . .. .. . . . ...... .... . . .................... ..... . .. .................... .. . . . . .. . . ..... . . . .... . . .... .................. ..... ... .. . .. ..... . . .. .. . .... ...... . ......... .
lowQualScore : 000 3 3 7777 77777777 0 2 0 2 88 0 55 88 5 0 88 0 000 888 8 3 7 7 7 55 3 7 11 7 7 7 7 7 1 7 7 7 33333333 7 7 7 99 0 2 7 7 22 7 222222 777 0 7 5 22 3 0 1 7777 0 33333 6 0000000000000 66 3 9 4 888 66 11 4 4 77 66 0 4 4 555555 0000 0 4 99999999999999999999 22222 4 11 44444444444444444444 66 7 1 8 0 66 8 6 22222 3 7 7 6666 0 8 8888 888888888888888888 00000 000 22 3 66 99999 3 7 66 66 8 1111 444444 3 333333333 3
consensus : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTCG-AAAAATACCTGC--AATTTAAAAAGCAAGGACA-------GATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--T---A-AT--TATTG-TATATTTTATATAATTGG-ATATNTTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
Reference ( family-328 ) : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTCG-AAAAATACCTGC--AATTTAAAAAGCAAGGACA-TCA--TGATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-ANCATAC-TTGTNGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--T---A-AT--TATTG-TATATTTTATATAATTGG-ATATTTTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTNT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
gi|1 : TTTGGAAAATTAAATTCATACTTTAA-GTACATAATATCATTCTATTTTG-AAAAATACCTGCCCAATTTAAAAAGCCAGGATA-----------CTCACTAAATTCAGCAATCCAGTAATCACTGCT-C-TACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAAAT---AAA----ACTATTGGTAAAATTGAGCTTCT-T-CCTAGGTCGTGAGAGAGTGTGTCAATAC-TGTACCTCAA-GTTC-AACAT-AAGA-CGAATTAC-A-TTT-TAACTCGA-ATGTT----CTC-TAT-AAAATAATTTTTTAGAGGAGAGTT-TT-TGAATAA-GA-TTTAA------AAAAACCCTTCTCCAATTCCTAGCAAT-ATTT-AACAAT-GCTGATTTGT--TTGCATGGATT------------ATGAAA--ATCCT-----GAATTTGCTGTTCAA-TCATGCCAA-TATT-TTG--ATCGTAAATT--ACAATAC------AAC-AACATGT-ACATAGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--------------------TGCATGTTCT-----ACAT-G--C------ATATATA-T---ATGC--TATTG-AATATTTCATATAATTGG--TATATTTGATGGCTAACTAAC-TTTCTG-TTC-ATCATGTC----ATG-CAACT--GT--TCTTTTCTC---GTTTG----------TTAT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGTAT-AC-AT--AT--CATGATGC----TCC
gi|10 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTGG-----TAAT-TTTTTG-TAC-CTCGGGCCCATGATG-CA-CTCAGGA-TATTTTCT--------T----------TTGT-----C---CTTTATTTA-TGCGATTTTG-ACC--C-----TGAT-GT--AT---ATGAT--------CT----CATGT-GGGCCCAAATT---------GG-TGAATAAATA-CTCTa
gi|11 : aat-TGTACCTCAT-GTTC-A-CAG-AAGA-TGAA-TGC-ACTTT-TTACTCGA-ATG-T----C-C-AGTGACTACAA--TTTTATAGGAGAGTT-TT-TAAACAATGA-TTTTT--------AA---CCTATCC-A-ACCTAGCACT-ACTTAtc
gi|12 : ATGCC----ATG-CAACT--GT--TATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGACA--CTA---T-AT-GT--AT--CATGATGC----TCCTGAGAC-TGC-GGGCCCAAATT---------GGATGACTAAATA-TT
gi|13 : ATGCC----ATG-CAACT----G-T-TTTTCTC---TTCTTCTTTTTTATTTTAT-----C---ATTTGTTTA-TGTAATGT-----A--T-----C-AT-G---AT--GATGATGC----TCCT----C-TGG-GGGCCCAAATT---------GTTTGAATAAATA-
gi|14 : TTGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAAACT--AA-TTA-TT--A------TGCATGTTCT-----ACAT-GCCCA-----AC-TACTAT---A-AT--AATTGTTATATTTgt
gi|15 : TTGTTTC---TTTTT----------TCA------C---CTTTGTTTA-TGTGAATT-GGACA--C-----T-AT-GA--AT--TATGATGC----TCCT----C-TAT-GGGCTCAACTT---------GGTTGAATAAATA-TTga
gi|16 : gcttTAT-----C---CTTTGTTTA-TGTGATGTTGAACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------AGTTGAATGAATATTTCTA
gi|17 : GTTTACCGTTC-AATTATGCCAA-TA-T-TTA--ATTGTAAATT--TTAACACAA-GAAAAC-AA-ATA
gi|18 : tacttaacaatgctgatctgtTTTGTTTA-TGTGATTTTGGACA--C-----T-AT-GT--AT--CATTATGG----TCCT----A-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTATAT
gi|19 : aGACA--C-----T-TT-GTCCAT--CATAATAC----TCCT----C-AGT-GGGCCCAA-CT---------GGTTGAATAAATA-TTCTA
gi|2 : tTTTGGAAAATTAAGTACATACTTTTCAGCACAAA-GATCTTTCAATTTCG-AAAAATACCT-C--AATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-A-TT-AGTA-TCACTGT--CATACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAGCCATTGGTAAAA-TGAAATTCT-T-CCTAGATGTTGAAAGATTTGGTCAATA--TGT-CCTCAG-GTTC-AACAG-AAGACTGAATTAC-A-TTT-TTACTCGATATA-T----CACATAT-ACAACAA--TTTTAGAGGAGAGTTGTTGTAAACAT-GAATTTTT------AAAA---CCTATCCAA-ACCTAGCACTCACTTAAACAATGGCTGATCTGT--T-ACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCATTC-A-TTATGCCAA-TA-CATTAC-ATTGTAAATC--TCAATACAA-GAAAAC-ACAATGC-TTGTTGAATAT-AAT-CATGTCTGTT------TAT-TT----TAGAA-CTGCAA-AT--AG-ATTCTT--A------TGC-TGTT-T-----ACAT-G--CG-----GCACAT--T---A-AT--CATTG-T-TTTTTTACATATTTGA-ATATTTTTGATGA----CTAACATCTCTGCTTCTAGCATGTC-----TGCCAACTCAGTGATAATTTCTCG--TTTGT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-ATAGT--AT--CATGATGC----T-CT----A-TGT-GGGTCCAAAT----------------GTAAATA-TTCTAT
gi|20 : TGTCTTGC------TATATT----TAG-A-CTGCAGCAT--AA-----TT--A------T-TATGTTCT-----ACAT-G--C------ACAt
gi|21 : -TGT-GGGCCCAAATT---------GGTTGAAT-AATA-TTCTAT
gi|3 : A-TGAA--TAAAAA-T---TAA--TAACTAT-GGTTAAA-TGAAATTCTATACCTAGGTGTT-AGAGAGCCTGTCAATAC-TGTA--TCAATGTTC-AACAG-ATGA-T---TTGC-A-TTTATTACTCGA-ATG-TT---CGC-TAT-ATAATAA--TTCTAGAGG-------------ACA---C-TTTTT------AAAA---CCTTTTCAA-AACTAGCAAT-GCTT-AACAAT-GCTGATCTG-----ACATGGATTATGTCAA-----GTG--------------------TACTGTTCTA-TTATGCCAA-TA-T-TTA--ATTGTAAATT--TCAATACAA-AAACAC-AACATAT-ATGTGCAACAT-AGT-TATGTCTGGT------TGTATT----TAG-A-TTGCAGCAT--GA---T-TT--AATACTCTGCATGTACT-----ACAT-G--T------ACATAT--------AT--TTGTG-TGTATTTTATATGATTGT--TAGGTTTGAGGG----CTAAT-TCTCTG-TTT-ATCATGCT----ATG-CAA--CAGTA-------------------------------------C---CTTTG-----TGTGATTTTGGACT--G-----T-AT-GC--AT--CATAATTC----TCCT-----------------AATT---------GGTTGAA-AAATA-TTtcta
gi|4 : CTCGCAAAATTCAG-AATT-AGTAATCACTGCGTC-TAC-------------AGGCAGATA-TGAA-AGAAAAT-TTTTAAA--TAACTAT-GGTAAAAATGAAATACT-T-CCTAGGTGT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-ATTTT-TTACTCGA-ATG-TC---CTC-TAT-ACAACAA--TTTTAAAGGAGAGTT-TT-TAAACAA-TA-TTTTTTTTTAAAAAA---ACTATCCAA-A------AC-------AAC-ATGGATAATC--T--TGA----GATT--------------------A--CC-------GTTCA-------A-TTATGGTAA-TA-C-TTC--ATTGTAAATT--TCAATACAC-GAAAAC-AACATAT-TTGTTGAATATAAGG-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AT-AAA-TT--A------TGCATGTTCT-----ACAT-G--CT------CATAT--------AT--TATTG-TATACTTT
gi|5 : AATG-CTGATCTTTAACAACATGGAT-ATGTCAACACCTATGAAA--A--ACTCGCAGAGTT-AC---TC-A-TT----CAA-TA-C-TTATAATTGTAAATGCGTCAATACAATGAAAACTAATATACCTTGTTGAATAA-AGT-CATGTC-AGT------TATATC----TAG-AGCTGCAACATTAAA-GTTCTT--A------TGCATGTTCTGATATACATTG--TG-----AGAT-T--T---A-ATACTATTG-TATATTTTAC----TTAG-ATGT----GAT------TTAACCTCTCTG-TTC-AGCATGTC----ATGGCAAATCAGTGATATGTTCTCAGCTTTGT----------TTATGTTTAC---CTT-GTT--ATGTTGGCTTGG-CAAGC-----T-ACAGC--ATTGCCTGAC-C----TGAT----A-TGTAGGGCTCAAACTTGGTGACTGGGTTGAATAAATA-t
gi|6 : ATCTGT--TAACATGGATTATGTCAA-----ATGGAATTC--CT-----GAGTTTACCATTC-AATTATGCCAA-TA-T-CTA--ATTGTAAATT--GCAATACAA-GAAAAC-AGCATAC-TTGTAGAATAT-AGT-CGTGTCTAGTTACTAGTATATTTA--TAG-A-CTGCAACAT--AATATTATT--A------TGCATGTTCT-----ACAT-G--CGCATATATATAC--TACAA-ATA-TATTG-TATATTCTATATAATTGGTATATTTT--ATGG----CTAAC-TCCCTG-TTC-ATCATGTC----ATG-CAACTCAGTGTTATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C-----T-AT-GT--AT--CATGTTGCTGAGTCCT----C-TTT-GGGCCCAAATT---------GGTTGAATAAATA-
gi|7 : atgctgattcaTTTGGAAAAGTAAGTACATACTTTCT-GCACAAAAGATCATTCAATTTCGGAAAAATACCTG---AATTTAAAAAGCAAGGACA-------GATTCTCGCAAAATTCAG-AATT-AGTAATCACTGT--C-TACG-GGTAG--AAACAGGCAGATATTGAA-AGAAAAA-T---AAAATTAGC-AATGGTAAAAATGAAATTCT-T-CCTAGATG-TGAAAGAATTTGTCAACACATGTACCTCAG-GTTCAAACAGAAAGA-TGAATTAC-ATTTT-TTAC-CGA-ATG-TATTCCAC-TAT-GTACCAA--GTTTA
gi|8 : acttttgggaaaatgttcgtacctgctatatgcaaggtTGATAAAAATGAAATTAT-T-CCGATGTGT-GAAAGAATTTGTCGATAC-TG----TCAG-GTTC-AA-AA-AAGA-TAAATTACAA-TTT-TTACTTGA-ATG-C----CG--------AA-------------------T-TT-TAAACTA-GA-TTTTT------AAAG---CCTTTCCAA-ACCTAATACA-ACTTAAA-AGT-GCTGATCCGT--TAATATGGATTATATCAA-----ATGAAA--A--TCAT---GAGTTTACCGTTCAA-TTATGCCAA-AA-T-TTA--ATTTT-AATC--TCGATACAA-GAACAC-AACACAC-TTATAGAATAT-A-C-CATGCCTAGT------CATATT----TAG-
gi|9 : a-A-TTATGCCAAGTA-C-TTA--ATTGTAAATC--TCAATACAA-GAAAA----CATAC--TGTTTAATAT-AACTCATGTCTAGT------TATATTTAGATAG-A-CTACAACAT--AA-ATT-CTTAA------TGCATGTTCTAA---ACAT-G--CGA----ACA-AT--T---A-
Alignments
lowQualScore : 111 1 3333 55555555 1 1 22 1 11 11 111 111 1 11 1 22222222 11 111111 111 11 1 1 1111 11111 3333333333333 1 11 111111 1111 33333333333333333333 11111 33333333333333333333 11 2 11111 1 1111 1 2222 222222222222222222 11111 22 11111 111111 111111111
lowQualScore : 888 7 3 1111 55555555 0 3 0 3 33 0 22 33 2 8 88 8 444 111 3 7 1 6 6 00 0 5 22 5 5 5 5 5 7 5 5 5 55555555 5 1 1 77 1 3 6 6 00 6 999999 111 1 6 2 00 1 5 0 1111 5 44444 3 4444444444444 33 3 8 4 777 00 66 4 1 4 0 88 1 4 4 111111 4444 4 4 44444444444444444444 77777 4 66 44444444444444444444 33 5 0 0 1 0 8 55555 3 6 6 0000 0 8 1111 888888888888888888 00000 777 44 1 44 22222 3 6 44 44 1 7777 222222 3 333333333 3
lowQualScore : ... . . .... ........ . . . . .. . .. .. . . .. . ... ... . . . . . .. . . .. . . . . . . . . . ........ . . . .. . . . . .. . ...... ... . . . .. . . . .... . ..... . ............. .. . . . ... .. .. . . . . .. . . . ...... .... . . .................... ..... . .. .................... .. . . . . . . ..... . . . .... . . .... .................. ..... ... .. . .. ..... . . .. .. . .... ...... . ......... .
lowQualScore : 000 3 3 7777 33333333 0 2 0 2 88 0 55 88 5 0 88 0 000 888 8 3 7 7 7 55 3 7 11 7 7 7 7 7 1 7 7 7 33333333 7 7 7 99 0 2 7 7 22 7 222222 777 0 7 5 22 3 0 1 7777 0 33333 6 0000000000000 66 3 9 4 888 66 11 4 8 4 1 66 0 4 4 555555 0000 0 4 99999999999999999999 22222 4 11 44444444444444444444 66 7 1 8 0 4 8 22222 3 7 7 6666 0 8 8888 333333333333333333 00000 000 22 3 66 99999 3 7 66 66 8 1111 444444 3 333333333 3
consensus : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--T---A-AT--TATTG-TATATTTTATATAATTGGATATATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
Reference ( family-328 ) : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--T---A-AT--TATTG-TATATTTTATATAATTGGATATNTTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
gi|1 : TTTGGAAAATTAAATTCATACTTTAA-GTACATAATATCATTCTATTTT-GAAAAATACCTGCCCAATTTAAAAAGCCAGGATA-----------CTCACTAAATTCAGCAATCCAGTAATCACTGCT-C-TACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAAAT---AAA----ACTATTGGTAAAATTGAGCTTCT-T-CCTAGGTCGTGAGAGAGTGTGTCAATAC-TGTACCTCAA-GTTC-AACAT-AAGA-CGAATTAC-A-TTT-TAACTCGA-ATGTT----CTC-TAT-AAAATAATTTTTTAGAGGAGAGTT-TT-TGAATAA-GA-TTTAA------AAAAACCCTTCTCCAATTCCTAGCAAT-ATTT-AACAAT-GCTGATTTGT--TTGCATGGATT------------ATGAAA--ATCCT-----GAATTTGCTGTTCAA-TCATGCCAA-TATT-TTG--ATCGTAAATT--ACAATAC------AAC-AACATGT-ACATAGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--------------------TGCATGTTCT-----ACAT-G--C------ATATATA-T---ATGC--TATTG-AATATTTCATATAATTGG-TATATTTGATGGCTAACTAAC-TTTCTG-TTC-ATCATGTC----ATG-CAACT--GT--TCTTTTCTC---GTTTG----------TTAT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGTAT-AC-AT--AT--CATGATGC----TCC
gi|10 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTGG-----TAAT-TTTTTG-TAC-CTCGGGCCCATGATG-CA-CTCAGGA-TATTTTCT--------T----------TTGT-----C---CTTTATTTA-TGCGATTTTG-ACC--C-----TGAT-GT--AT---ATGAT--------CT----CATGT-GGGCCCAAATT---------GG-TGAATAAATA-CTCTa
gi|11 : aat-TGTACCTCAT-GTTC-A-CAG-AAGA-TGAA-TGC-ACTTT-TTACTCGA-ATG-T----C-C-AGTGACTACAA--TTTTATAGGAGAGTT-TT-TAAACAATGA-TTTTT--------AA---CCTATCC-A-ACCTAGCACT-ACTTAtc
gi|12 : ATGCC----ATG-CAACT--GT--TATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGACA--CTA---T-AT-GT--AT--CATGATGC----TCCTGAGAC-TGC-GGGCCCAAATT---------GGATGACTAAATA-TT
gi|13 : ATGCC----ATG-CAACT----G-T-TTTTCTC---TTCTTCTTTTTTATTTTAT-----C---ATTTGTTTA-TGTAATGT-----A--T-----C-AT-G---AT--GATGATGC----TCCT----C-TGG-GGGCCCAAATT---------GTTTGAATAAATA-
gi|14 : TTGAATAT-AGC-CATGTCTAGT------TATATT----TAG-A-CTGCAAACT--AA-TTA-TT--A------TGCATGTTCT-----ACAT-GCCCA-----AC-TACTAT---A-AT--AATTGTTATATTTgt
gi|15 : TTGTTTC---TTTTT----------TCA------C---CTTTGTTTA-TGTGAATT-GGACA--C-----T-AT-GA--AT--TATGATGC----TCCT----C-TAT-GGGCTCAACTT---------GGTTGAATAAATA-TTga
gi|16 : gcttTAT-----C---CTTTGTTTA-TGTGATGTTGAACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------AGTTGAATGAATATTTCTA
gi|17 : GTTTACCGTTC-AATTATGCCAA-TA-T-TTA--ATTGTAAATT--TTAACACAA-GAAAAC-AA-ATA
gi|18 : tacttaacaatgctgatctgtTTTGTTTA-TGTGATTTTGGACA--C-----T-AT-GT--AT--CATTATGG----TCCT----A-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTATAT
gi|19 : aGACA--C-----T-TT-GTCCAT--CATAATAC----TCCT----C-AGT-GGGCCCAA-CT---------GGTTGAATAAATA-TTCTA
gi|2 : tTTTGGAAAATTAAGTACATACTTTTCAGCACAAA-GATCTTTCAATTTC-GAAAAATACCT-C--AATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-A-TT-AGTA-TCACTGT--CATACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAGCCATTGGTAAAA-TGAAATTCT-T-CCTAGATGTTGAAAGATTTGGTCAATA--TGT-CCTCAG-GTTC-AACAG-AAGACTGAATTAC-A-TTT-TTACTCGATATA-T----CACATAT-ACAACAA--TTTTAGAGGAGAGTTGTTGTAAACAT-GAATTTTT------AAAA---CCTATCCAA-ACCTAGCACTCACTTAAACAATGGCTGATCTGT--T-ACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCATTC-A-TTATGCCAA-TA-CATTAC-ATTGTAAATC--TCAATACAA-GAAAAC-ACAATGC-TTGTTGAATAT-AAT-CATGTCTGTT------TAT-TT----TAGAA-CTGCAA-AT--AG-ATTCTT--A------TGC-TGTT-T-----ACAT-G--CG-----GCACAT--T---A-AT--CATTG-T-TTTTTTACATATTTGAATATTTTTGATGA----CTAACATCTCTGCTTCTAGCATGTC-----TGCCAACTCAGTGATAATTTCTCG--TTTGT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-ATAGT--AT--CATGATGC----T-CT----A-TGT-GGGTCCAAAT----------------GTAAATA-TTCTAT
gi|20 : TGTCTTGC------TATATT----TAG-A-CTGCAGCAT--AA-----TT--A------T-TATGTTCT-----ACAT-G--C------ACAt
gi|21 : -TGT-GGGCCCAAATT---------GGTTGAAT-AATA-TTCTAT
gi|3 : A-TGAA--TAAAAA-T---TAA--TAACTAT-GGTTAAA-TGAAATTCTATACCTAGGTGTT-AGAGAGCCTGTCAATAC-TGTA--TCAATGTTC-AACAG-ATGA-T---TTGC-A-TTTATTACTCGA-ATG-TT---CGC-TAT-ATAATAA--TTCTAGAGG-------------ACA---C-TTTTT------AAAA---CCTTTTCAA-AACTAGCAAT-GCTT-AACAAT-GCTGATCTG-----ACATGGATTATGTCAA-----GTG--------------------TACTGTTCTA-TTATGCCAA-TA-T-TTA--ATTGTAAATT--TCAATACAA-AAACAC-AACATAT-ATGTGCAACAT-AGT-TATGTCTGGT------TGTATT----TAG-A-TTGCAGCAT--GA---T-TT--AATACTCTGCATGTACT-----ACAT-G--T------ACATAT--------AT--TTGTG-TGTATTTTATATGATTGT-TAGGTTTGAGGG----CTAAT-TCTCTG-TTT-ATCATGCT----ATG-CAA--CAGTA-------------------------------------C---CTTTG-----TGTGATTTTGGACT--G-----T-AT-GC--AT--CATAATTC----TCCT-----------------AATT---------GGTTGAA-AAATA-TTtcta
gi|4 : CTCGCAAAATTCAG-AATT-AGTAATCACTGCGTC-TAC-------------AGGCAGATA-TGAA-AGAAAAT-TTTTAAA--TAACTAT-GGTAAAAATGAAATACT-T-CCTAGGTGT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-ATTTT-TTACTCGA-ATG-TC---CTC-TAT-ACAACAA--TTTTAAAGGAGAGTT-TT-TAAACAA-TA-TTTTTTTTTAAAAAA---ACTATCCAA-A------AC-------AAC-ATGGATAATC--T--TGA----GATT--------------------A--CC-------GTTCA-------A-TTATGGTAA-TA-C-TTC--ATTGTAAATT--TCAATACAC-GAAAAC-AACATAT-TTGTTGAATATAAGG-CATGTCTAGT------TATATT----TAG-A-CTGCAACAT--AT-AAA-TT--A------TGCATGTTCT-----ACAT-G--CT------CATAT--------AT--TATTG-TATACTTT
gi|5 : AATG-CTGATCTTTAACAACATGGAT-ATGTCAACACCTATGAAA--A--ACTCGCAGAGTT-AC---TC-A-TT----CAA-TA-C-TTATAATTGTAAATGCGTCAATACAATGAAAACTAATATACCTTGTTGAATAA-AGT-CATGTC-AGT------TATATC----TAG-AGCTGCAACATTAAA-GTTCTT--A------TGCATGTTCTGATATACATTG--TG-----AGAT-T--T---A-ATACTATTG-TATATTTTAC----TTAGATGT----GAT------TTAACCTCTCTG-TTC-AGCATGTC----ATGGCAAATCAGTGATATGTTCTCAGCTTTGT----------TTATGTTTAC---CTT-GTT--ATGTTGGCTTGG-CAAGC-----T-ACAGC--ATTGCCTGAC-C----TGAT----A-TGTAGGGCTCAAACTTGGTGACTGGGTTGAATAAATA-t
gi|6 : ATCTGT--TAACATGGATTATGTCAA-----ATGGAATTC--CT-----GAGTTTACCATTC-AATTATGCCAA-TA-T-CTA--ATTGTAAATT--GCAATACAA-GAAAAC-AGCATAC-TTGTAGAATAT-AGT-CGTGTCTAGTTACTAGTATATTTA--TAG-A-CTGCAACAT--AATATTATT--A------TGCATGTTCT-----ACAT-G--CGCATATATATAC--TACAA-ATA-TATTG-TATATTCTATATAATTGG-TATATTTTATGG----CTAAC-TCCCTG-TTC-ATCATGTC----ATG-CAACTCAGTGTTATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C-----T-AT-GT--AT--CATGTTGCTGAGTCCT----C-TTT-GGGCCCAAATT---------GGTTGAATAAATA-
gi|7 : atgctgattcaTTTGGAAAAGTAAGTACATACTTTCT-GCACAAAAGATCATTCAATTTCGGAAAAATACCTG---AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGT--C-TACG-GGTAG--AAACAGGCAGATATTGAA-AGAAAAA-T---AAAATTAGC-AATGGTAAAAATGAAATTCT-T-CCTAGATG-TGAAAGAATTTGTCAACACATGTACCTCAG-GTTCAAACAGAAAGA-TGAATTAC-ATTTT-TTAC-CGA-ATG-TATTCCAC-TAT-GTACCAA--GTTTA
gi|8 : acttttgggaaaatgttcgtacctgctatatgcaaggtTGATAAAAATGAAATTAT-T-CCGATGTGT-GAAAGAATTTGTCGATAC-TG----TCAG-GTTC-AA-AA-AAGA-TAAATTACAA-TTT-TTACTTGA-ATG-C----CG--------AA-------------------T-TT-TAAACTA-GA-TTTTT------AAAG---CCTTTCCAA-ACCTAATACA-ACTTAAA-AGT-GCTGATCCGT--TAATATGGATTATATCAA-----ATGAAA--A--TCAT---GAGTTTACCGTTCAA-TTATGCCAA-AA-T-TTA--ATTTT-AATC--TCGATACAA-GAACAC-AACACAC-TTATAGAATAT-A-C-CATGCCTAGT------CATATT----TAG-
gi|9 : a-A-TTATGCCAAGTA-C-TTA--ATTGTAAATC--TCAATACAA-GAA----AACATAC--TGTTTAATAT-AACTCATGTCTAGT------TATATTTAGATAG-A-CTACAACAT--AA-ATT-CTTAA------TGCATGTTCTAA---ACAT-G--CGA----ACA-AT--T---A-
Alignments
lowQualScore : 111 1 3333 55555555 1 1 22 1 11 11 111 111 1 11 1 22222222 11 111111 111 11 1 1 1111 11111 3333333333333 1 11 111111 33333333333333333333 11111 3333333333333333333 11 2 11111 1111 1 2222 222222222222222222 11111 22 11111 111111 111111111
lowQualScore : 888 7 3 1111 55555555 0 3 0 3 33 0 22 33 2 8 88 8 444 111 3 7 1 6 6 00 0 5 22 5 5 5 5 5 7 5 5 5 55555555 5 1 1 77 1 3 6 6 00 6 999999 111 1 6 2 00 1 5 0 1111 5 44444 3 4444444444444 33 3 8 4 777 00 66 4 1 4 0 88 1 4 4 111111 8888 55 4 4 44444444444444444444 77777 4 66 4444444444444444444 33 5 0 0 1 0 8 66666 6 6 6 0000 0 8 1111 888888888888888888 00000 777 44 1 44 22222 3 6 44 44 1 7777 222222 3 333333333 3
lowQualScore : ... . . .... ........ . . . . .. . .. .. . . .. . ... ... . . . . . .. . . .. . . . . . . . . . ........ . . . .. . . . . .. . ...... ... . . . .. . . . .... . ..... . ............. .. . . . ... .. .. . . . . .. . . . ...... .... .. . . .................... ..... . .. ................... .. . . . . . . ..... . . . .... . . .... .................. ..... ... .. . .. ..... . . .. .. . .... ...... . ......... .
lowQualScore : 000 3 3 7777 33333333 0 2 0 2 88 0 55 88 5 0 88 0 000 888 8 3 7 7 7 55 3 7 11 7 7 7 7 7 1 7 7 7 33333333 7 7 7 99 0 2 7 7 22 7 222222 777 0 7 5 22 3 0 1 7777 0 33333 6 0000000000000 66 3 9 4 888 66 11 4 8 4 1 66 0 4 4 555555 5555 55 0 4 99999999999999999999 22222 4 11 4444444444444444444 66 7 1 8 0 4 0 77777 7 7 7 6666 0 8 8888 333333333333333333 00000 000 22 3 66 99999 3 7 66 66 8 1111 444444 3 333333333 3
consensus : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
Reference ( family-328 ) : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
gi|1 : TTTGGAAAATTAAATTCATACTTTAA-GTACATAATATCATTCTATTTT-GAAAAATACCTGCCCAATTTAAAAAGCCAGGATA-----------CTCACTAAATTCAGCAATCCAGTAATCACTGCT-C-TACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAAAT---AAA----ACTATTGGTAAAATTGAGCTTCT-T-CCTAGGTCGTGAGAGAGTGTGTCAATAC-TGTACCTCAA-GTTC-AACAT-AAGA-CGAATTAC-A-TTT-TAACTCGA-ATGTT----CTC-TAT-AAAATAATTTTTTAGAGGAGAGTT-TT-TGAATAA-GA-TTTAA------AAAAACCCTTCTCCAATTCCTAGCAAT-ATTT-AACAAT-GCTGATTTGT--TTGCATGGATT------------ATGAAA--ATCCT-----GAATTTGCTGTTCAA-TCATGCCAA-TATT-TTG--ATCGTAAATT--ACAATAC------AAC-AACATGT-ACATAGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--------------------TGCATGTTCT-----ACAT-G--C------ATATATA-TAT--GC--TATTG-AATATTTCATATAATTGG-TAT-ATTTGATGGCTAACTAAC-TTTCTG-TTC-ATCATGTC----ATG-CAACT--GT--TCTTTTCTC---GTTTG----------TTAT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGTAT-AC-AT--AT--CATGATGC----TCC
gi|10 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTGG-----TAAT-TTTTTG-TAC-CTCGGGCCCATGATG-CA-CTCAGGA-TATTTTCT--------T----------TTGT-----C---CTTTATTTA-TGCGATTTTG-ACC--C-----TGAT-GT--AT---ATGAT--------CT----CATGT-GGGCCCAAATT---------GG-TGAATAAATA-CTCTa
gi|11 : aat-TGTACCTCAT-GTTC-A-CAG-AAGA-TGAA-TGC-ACTTT-TTACTCGA-ATG-T----C-C-AGTGACTACAA--TTTTATAGGAGAGTT-TT-TAAACAATGA-TTTTT--------AA---CCTATCC-A-ACCTAGCACT-ACTTAtc
gi|12 : ATGCC----ATG-CAACT--GT--TATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGACA--CTA---T-AT-GT--AT--CATGATGC----TCCTGAGAC-TGC-GGGCCCAAATT---------GGATGACTAAATA-TT
gi|13 : ATGCC----ATG-CAACT----G-T-TTTTCTC---TTCTTCTTTTTTATTTTAT-----C---ATTTGTTTA-TGTAATGT-----A--T-----C-AT-G---AT--GATGATGC----TCCT----C-TGG-GGGCCCAAATT---------GTTTGAATAAATA-
gi|14 : TTGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAAACT--AA-TTA-TT--A------TGCATGTTCT-----ACAT-GCCCA-----AC-TACTATA---AT--AATTGTTATATTTgt
gi|15 : TTGTTTC---TTTTT----------TCA------C---CTTTGTTTA-TGTGAATT-GGACA--C-----T-AT-GA--AT--TATGATGC----TCCT----C-TAT-GGGCTCAACTT---------GGTTGAATAAATA-TTga
gi|16 : gcttTAT-----C---CTTTGTTTA-TGTGATGTTGAACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------AGTTGAATGAATATTTCTA
gi|17 : GTTTACCGTTC-AATTATGCCAA-TA-T-TTA--ATTGTAAATT--TTAACACAA-GAAAAC-AA-ATA
gi|18 : tacttaacaatgctgatctgtTTTGTTTA-TGTGATTTTGGACA--C-----T-AT-GT--AT--CATTATGG----TCCT----A-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTATAT
gi|19 : aGACA--C-----T-TT-GTCCAT--CATAATAC----TCCT----C-AGT-GGGCCCAA-CT---------GGTTGAATAAATA-TTCTA
gi|2 : tTTTGGAAAATTAAGTACATACTTTTCAGCACAAA-GATCTTTCAATTTC-GAAAAATACCT-C--AATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-A-TT-AGTA-TCACTGT--CATACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAGCCATTGGTAAAA-TGAAATTCT-T-CCTAGATGTTGAAAGATTTGGTCAATA--TGT-CCTCAG-GTTC-AACAG-AAGACTGAATTAC-A-TTT-TTACTCGATATA-T----CACATAT-ACAACAA--TTTTAGAGGAGAGTTGTTGTAAACAT-GAATTTTT------AAAA---CCTATCCAA-ACCTAGCACTCACTTAAACAATGGCTGATCTGT--T-ACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCATTC-A-TTATGCCAA-TA-CATTAC-ATTGTAAATC--TCAATACAA-GAAAAC-ACAATGC-TTGTTGAATAT-AAT-CATGTCTGTTTA------T-TT----TA--GAA-CTGCAA-AT--AG-ATTCTT--A------TGC-TGTT-T-----ACAT-G--CG-----GCACAT--TA---AT--CATTG-T-TTTTTTACATATTTGAATAT-TTTTGATGA----CTAACATCTCTGCTTCTAGCATGTC-----TGCCAACTCAGTGATAATTTCTCG--TTTGT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-ATAGT--AT--CATGATGC----T-CT----A-TGT-GGGTCCAAAT----------------GTAAATA-TTCTAT
gi|20 : TGTCTTGCTA------TATT----TA--G-A-CTGCAGCAT--AA-----TT--A------T-TATGTTCT-----ACAT-G--C------ACAt
gi|21 : -TGT-GGGCCCAAATT---------GGTTGAAT-AATA-TTCTAT
gi|3 : A-TGAA--TAAAAA-T---TAA--TAACTAT-GGTTAAA-TGAAATTCTATACCTAGGTGTT-AGAGAGCCTGTCAATAC-TGTA--TCAATGTTC-AACAG-ATGA-T---TTGC-A-TTTATTACTCGA-ATG-TT---CGC-TAT-ATAATAA--TTCTAGAGG-------------ACA---C-TTTTT------AAAA---CCTTTTCAA-AACTAGCAAT-GCTT-AACAAT-GCTGATCTG-----ACATGGATTATGTCAA-----GTG--------------------TACTGTTCTA-TTATGCCAA-TA-T-TTA--ATTGTAAATT--TCAATACAA-AAACAC-AACATAT-ATGTGCAACAT-AGT-TATGTCTGGTTG------TATT----TA--G-A-TTGCAGCAT--GA---T-TT--AATACTCTGCATGTACT-----ACAT-G--T------ACATAT-------AT--TTGTG-TGTATTTTATATGATTGT-TAG-GTTTGAGGG----CTAAT-TCTCTG-TTT-ATCATGCT----ATG-CAA--CAGTA-------------------------------------C---CTTTG-----TGTGATTTTGGACT--G-----T-AT-GC--AT--CATAATTC----TCCT-----------------AATT---------GGTTGAA-AAATA-TTtcta
gi|4 : CTCGCAAAATTCAG-AATT-AGTAATCACTGCGTC-TAC-------------AGGCAGATA-TGAA-AGAAAAT-TTTTAAA--TAACTAT-GGTAAAAATGAAATACT-T-CCTAGGTGT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-ATTTT-TTACTCGA-ATG-TC---CTC-TAT-ACAACAA--TTTTAAAGGAGAGTT-TT-TAAACAA-TA-TTTTTTTTTAAAAAA---ACTATCCAA-A------AC-------AAC-ATGGATAATC--T--TGA----GATT--------------------A--CC-------GTTCA-------A-TTATGGTAA-TA-C-TTC--ATTGTAAATT--TCAATACAC-GAAAAC-AACATAT-TTGTTGAATATAAGG-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AT-AAA-TT--A------TGCATGTTCT-----ACAT-G--CT------CATAT-------AT--TATTG-TATACTTT
gi|5 : AATG-CTGATCTTTAACAACATGGAT-ATGTCAACACCTATGAAA--A--ACTCGCAGAGTT-AC---TC-A-TT----CAA-TA-C-TTATAATTGTAAATGCGTCAATACAATGAAAACTAATATACCTTGTTGAATAA-AGT-CATGTC-AGTTA------TATC----TA--G-AGCTGCAACATTAAA-GTTCTT--A------TGCATGTTCTGATATACATTG--TG-----AGAT-T--TA---ATACTATTG-TATATTTTAC----TTAGATGTGATTTAAC----------C-TCTCTG-TTC-AGCATGTC----ATGGCAAATCAGTGATATGTTCTCAGCTTTGT----------TTATGTTTAC---CTT-GTT--ATGTTGGCTTGG-CAAGC-----T-ACAGC--ATTGCCTGAC-C----TGAT----A-TGTAGGGCTCAAACTTGGTGACTGGGTTGAATAAATA-t
gi|6 : ATCTGT--TAACATGGATTATGTCAA-----ATGGAATTC--CT-----GAGTTTACCATTC-AATTATGCCAA-TA-T-CTA--ATTGTAAATT--GCAATACAA-GAAAAC-AGCATAC-TTGTAGAATAT-AGT-CGTGTCTAGTTACTAGTATATT----TATAG-A-CTGCAACAT--AATATTATT--A------TGCATGTTCT-----ACAT-G--CGCATATATATAC--TACAAATA-TATTG-TATATTCTATATAATTGG-TAT-ATTTTATGG----CTAAC-TCCCTG-TTC-ATCATGTC----ATG-CAACTCAGTGTTATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C-----T-AT-GT--AT--CATGTTGCTGAGTCCT----C-TTT-GGGCCCAAATT---------GGTTGAATAAATA-
gi|7 : atgctgattcaTTTGGAAAAGTAAGTACATACTTTCT-GCACAAAAGATCATTCAATTTCGGAAAAATACCTG---AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGT--C-TACG-GGTAG--AAACAGGCAGATATTGAA-AGAAAAA-T---AAAATTAGC-AATGGTAAAAATGAAATTCT-T-CCTAGATG-TGAAAGAATTTGTCAACACATGTACCTCAG-GTTCAAACAGAAAGA-TGAATTAC-ATTTT-TTAC-CGA-ATG-TATTCCAC-TAT-GTACCAA--GTTTA
gi|8 : acttttgggaaaatgttcgtacctgctatatgcaaggtTGATAAAAATGAAATTAT-T-CCGATGTGT-GAAAGAATTTGTCGATAC-TG----TCAG-GTTC-AA-AA-AAGA-TAAATTACAA-TTT-TTACTTGA-ATG-C----CG--------AA-------------------T-TT-TAAACTA-GA-TTTTT------AAAG---CCTTTCCAA-ACCTAATACA-ACTTAAA-AGT-GCTGATCCGT--TAATATGGATTATATCAA-----ATGAAA--A--TCAT---GAGTTTACCGTTCAA-TTATGCCAA-AA-T-TTA--ATTTT-AATC--TCGATACAA-GAACAC-AACACAC-TTATAGAATAT-A-C-CATGCCTAGTCA------TATT----TA--G-
gi|9 : a-A-TTATGCCAAGTA-C-TTA--ATTGTAAATC--TCAATACAA-GAA----AACATAC--TGTTTAATAT-AACTCATGTCTAGTTA------TATTTAGATA--G-A-CTACAACAT--AA-ATT-CTTAA------TGCATGTTCTAA---ACAT-G--CGA----ACA-AT--TA---
Alignments
lowQualScore : 111 1 3333 55555555 1 1 22 1 11 11 111 111 1 11 1 22222222 11 111111 111 11 1 1 1111 11111 3333333333333 1 11 111111 33333333333333333333 11111 3333333333333333333 11 2 11111 1111 1 2222 222222222222222222 11111 22 11111 111111 111111111
lowQualScore : 888 7 3 1111 55555555 0 3 0 3 33 0 22 33 2 8 88 8 444 111 3 7 1 6 6 00 0 5 22 5 5 5 5 5 7 5 5 5 55555555 5 1 1 77 1 3 6 6 00 6 999999 111 1 6 2 00 1 5 0 1111 5 44444 3 4444444444444 33 3 8 4 777 00 66 4 1 4 0 88 1 4 4 111111 8888 55 4 4 44444444444444444444 77777 4 66 4444444444444444444 33 5 0 0 1 0 8 66666 6 6 6 0000 0 8 1111 888888888888888888 00000 777 44 1 44 22222 3 6 44 44 1 7777 222222 3 333333333 3
lowQualScore : ... . . .... ........ . . . . .. . .. .. . . .. . ... ... . . . . . .. . . .. . . . . . . . . . ........ . . . .. . . . . .. . ...... ... . . . .. . . . .... . ..... . ............. .. . . . ... .. .. . . . . .. . . . ...... .... .. . . .................... ..... . .. ................... .. . . . . . . ..... . . . .... . . .... .................. ..... ... .. . .. ..... . . .. .. . .... ...... . ......... .
lowQualScore : 000 3 3 7777 33333333 0 2 0 2 88 0 55 88 5 0 88 0 000 888 8 3 7 7 7 55 3 7 11 7 7 7 7 7 1 7 7 7 33333333 7 7 7 99 0 2 7 7 22 7 222222 777 0 7 5 22 3 0 1 7777 0 33333 6 0000000000000 66 3 9 4 888 66 11 4 8 4 1 66 0 4 4 555555 5555 55 0 4 99999999999999999999 22222 4 11 4444444444444444444 66 7 1 8 0 4 0 77777 7 7 7 6666 0 8 8888 333333333333333333 00000 000 22 3 66 99999 3 7 66 66 8 1111 444444 3 333333333 3
consensus : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
Reference ( family-328 ) : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
gi|1 : TTTGGAAAATTAAATTCATACTTTAA-GTACATAATATCATTCTATTTT-GAAAAATACCTGCCCAATTTAAAAAGCCAGGATA-----------CTCACTAAATTCAGCAATCCAGTAATCACTGCT-C-TACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAAAT---AAA----ACTATTGGTAAAATTGAGCTTCT-T-CCTAGGTCGTGAGAGAGTGTGTCAATAC-TGTACCTCAA-GTTC-AACAT-AAGA-CGAATTAC-A-TTT-TAACTCGA-ATGTT----CTC-TAT-AAAATAATTTTTTAGAGGAGAGTT-TT-TGAATAA-GA-TTTAA------AAAAACCCTTCTCCAATTCCTAGCAAT-ATTT-AACAAT-GCTGATTTGT--TTGCATGGATT------------ATGAAA--ATCCT-----GAATTTGCTGTTCAA-TCATGCCAA-TATT-TTG--ATCGTAAATT--ACAATAC------AAC-AACATGT-ACATAGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--------------------TGCATGTTCT-----ACAT-G--C------ATATATA-TAT--GC--TATTG-AATATTTCATATAATTGG-TAT-ATTTGATGGCTAACTAAC-TTTCTG-TTC-ATCATGTC----ATG-CAACT--GT--TCTTTTCTC---GTTTG----------TTAT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGTAT-AC-AT--AT--CATGATGC----TCC
gi|10 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTGG-----TAAT-TTTTTG-TAC-CTCGGGCCCATGATG-CA-CTCAGGA-TATTTTCT--------T----------TTGT-----C---CTTTATTTA-TGCGATTTTG-ACC--C-----TGAT-GT--AT---ATGAT--------CT----CATGT-GGGCCCAAATT---------GG-TGAATAAATA-CTCTa
gi|11 : aat-TGTACCTCAT-GTTC-A-CAG-AAGA-TGAA-TGC-ACTTT-TTACTCGA-ATG-T----C-C-AGTGACTACAA--TTTTATAGGAGAGTT-TT-TAAACAATGA-TTTTT--------AA---CCTATCC-A-ACCTAGCACT-ACTTAtc
gi|12 : ATGCC----ATG-CAACT--GT--TATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGACA--CTA---T-AT-GT--AT--CATGATGC----TCCTGAGAC-TGC-GGGCCCAAATT---------GGATGACTAAATA-TT
gi|13 : ATGCC----ATG-CAACT----G-T-TTTTCTC---TTCTTCTTTTTTATTTTAT-----C---ATTTGTTTA-TGTAATGT-----A--T-----C-AT-G---AT--GATGATGC----TCCT----C-TGG-GGGCCCAAATT---------GTTTGAATAAATA-
gi|14 : TTGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAAACT--AA-TTA-TT--A------TGCATGTTCT-----ACAT-GCCCA-----AC-TACTATA---AT--AATTGTTATATTTgt
gi|15 : TTGTTTC---TTTTT----------TCA------C---CTTTGTTTA-TGTGAATT-GGACA--C-----T-AT-GA--AT--TATGATGC----TCCT----C-TAT-GGGCTCAACTT---------GGTTGAATAAATA-TTga
gi|16 : gcttTAT-----C---CTTTGTTTA-TGTGATGTTGAACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------AGTTGAATGAATATTTCTA
gi|17 : GTTTACCGTTC-AATTATGCCAA-TA-T-TTA--ATTGTAAATT--TTAACACAA-GAAAAC-AA-ATA
gi|18 : tacttaacaatgctgatctgtTTTGTTTA-TGTGATTTTGGACA--C-----T-AT-GT--AT--CATTATGG----TCCT----A-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTATAT
gi|19 : aGACA--C-----T-TT-GTCCAT--CATAATAC----TCCT----C-AGT-GGGCCCAA-CT---------GGTTGAATAAATA-TTCTA
gi|2 : tTTTGGAAAATTAAGTACATACTTTTCAGCACAAA-GATCTTTCAATTTC-GAAAAATACCT-C--AATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-A-TT-AGTA-TCACTGT--CATACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAGCCATTGGTAAAA-TGAAATTCT-T-CCTAGATGTTGAAAGATTTGGTCAATA--TGT-CCTCAG-GTTC-AACAG-AAGACTGAATTAC-A-TTT-TTACTCGATATA-T----CACATAT-ACAACAA--TTTTAGAGGAGAGTTGTTGTAAACAT-GAATTTTT------AAAA---CCTATCCAA-ACCTAGCACTCACTTAAACAATGGCTGATCTGT--T-ACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCATTC-A-TTATGCCAA-TA-CATTAC-ATTGTAAATC--TCAATACAA-GAAAAC-ACAATGC-TTGTTGAATAT-AAT-CATGTCTGTTTA------T-TT----TA--GAA-CTGCAA-AT--AG-ATTCTT--A------TGC-TGTT-T-----ACAT-G--CG-----GCACAT--TA---AT--CATTG-T-TTTTTTACATATTTGAATAT-TTTTGATGA----CTAACATCTCTGCTTCTAGCATGTC-----TGCCAACTCAGTGATAATTTCTCG--TTTGT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-ATAGT--AT--CATGATGC----T-CT----A-TGT-GGGTCCAAAT----------------GTAAATA-TTCTAT
gi|20 : TGTCTTGCTA------TATT----TA--G-A-CTGCAGCAT--AA-----TT--A------T-TATGTTCT-----ACAT-G--C------ACAt
gi|21 : -TGT-GGGCCCAAATT---------GGTTGAAT-AATA-TTCTAT
gi|3 : A-TGAA--TAAAAA-T---TAA--TAACTAT-GGTTAAA-TGAAATTCTATACCTAGGTGTT-AGAGAGCCTGTCAATAC-TGTA--TCAATGTTC-AACAG-ATGA-T---TTGC-A-TTTATTACTCGA-ATG-TT---CGC-TAT-ATAATAA--TTCTAGAGG-------------ACA---C-TTTTT------AAAA---CCTTTTCAA-AACTAGCAAT-GCTT-AACAAT-GCTGATCTG-----ACATGGATTATGTCAA-----GTG--------------------TACTGTTCTA-TTATGCCAA-TA-T-TTA--ATTGTAAATT--TCAATACAA-AAACAC-AACATAT-ATGTGCAACAT-AGT-TATGTCTGGTTG------TATT----TA--G-A-TTGCAGCAT--GA---T-TT--AATACTCTGCATGTACT-----ACAT-G--T------ACATAT-------AT--TTGTG-TGTATTTTATATGATTGT-TAG-GTTTGAGGG----CTAAT-TCTCTG-TTT-ATCATGCT----ATG-CAA--CAGTA-------------------------------------C---CTTTG-----TGTGATTTTGGACT--G-----T-AT-GC--AT--CATAATTC----TCCT-----------------AATT---------GGTTGAA-AAATA-TTtcta
gi|4 : CTCGCAAAATTCAG-AATT-AGTAATCACTGCGTC-TAC-------------AGGCAGATA-TGAA-AGAAAAT-TTTTAAA--TAACTAT-GGTAAAAATGAAATACT-T-CCTAGGTGT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-ATTTT-TTACTCGA-ATG-TC---CTC-TAT-ACAACAA--TTTTAAAGGAGAGTT-TT-TAAACAA-TA-TTTTTTTTTAAAAAA---ACTATCCAA-A------AC-------AAC-ATGGATAATC--T--TGA----GATT--------------------A--CC-------GTTCA-------A-TTATGGTAA-TA-C-TTC--ATTGTAAATT--TCAATACAC-GAAAAC-AACATAT-TTGTTGAATATAAGG-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AT-AAA-TT--A------TGCATGTTCT-----ACAT-G--CT------CATAT-------AT--TATTG-TATACTTT
gi|5 : AATG-CTGATCTTTAACAACATGGAT-ATGTCAACACCTATGAAA--A--ACTCGCAGAGTT-AC---TC-A-TT----CAA-TA-C-TTATAATTGTAAATGCGTCAATACAATGAAAACTAATATACCTTGTTGAATAA-AGT-CATGTC-AGTTA------TATC----TA--G-AGCTGCAACATTAAA-GTTCTT--A------TGCATGTTCTGATATACATTG--TG-----AGAT-T--TA---ATACTATTG-TATATTTTAC----TTAGATGTGATTTAAC----------C-TCTCTG-TTC-AGCATGTC----ATGGCAAATCAGTGATATGTTCTCAGCTTTGT----------TTATGTTTAC---CTT-GTT--ATGTTGGCTTGG-CAAGC-----T-ACAGC--ATTGCCTGAC-C----TGAT----A-TGTAGGGCTCAAACTTGGTGACTGGGTTGAATAAATA-t
gi|6 : ATCTGT--TAACATGGATTATGTCAA-----ATGGAATTC--CT-----GAGTTTACCATTC-AATTATGCCAA-TA-T-CTA--ATTGTAAATT--GCAATACAA-GAAAAC-AGCATAC-TTGTAGAATAT-AGT-CGTGTCTAGTTACTAGTATATT----TATAG-A-CTGCAACAT--AATATTATT--A------TGCATGTTCT-----ACAT-G--CGCATATATATAC--TACAAATA-TATTG-TATATTCTATATAATTGG-TAT-ATTTTATGG----CTAAC-TCCCTG-TTC-ATCATGTC----ATG-CAACTCAGTGTTATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C-----T-AT-GT--AT--CATGTTGCTGAGTCCT----C-TTT-GGGCCCAAATT---------GGTTGAATAAATA-
gi|7 : atgctgattcaTTTGGAAAAGTAAGTACATACTTTCT-GCACAAAAGATCATTCAATTTCGGAAAAATACCTG---AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGT--C-TACG-GGTAG--AAACAGGCAGATATTGAA-AGAAAAA-T---AAAATTAGC-AATGGTAAAAATGAAATTCT-T-CCTAGATG-TGAAAGAATTTGTCAACACATGTACCTCAG-GTTCAAACAGAAAGA-TGAATTAC-ATTTT-TTAC-CGA-ATG-TATTCCAC-TAT-GTACCAA--GTTTA
gi|8 : acttttgggaaaatgttcgtacctgctatatgcaaggtTGATAAAAATGAAATTAT-T-CCGATGTGT-GAAAGAATTTGTCGATAC-TG----TCAG-GTTC-AA-AA-AAGA-TAAATTACAA-TTT-TTACTTGA-ATG-C----CG--------AA-------------------T-TT-TAAACTA-GA-TTTTT------AAAG---CCTTTCCAA-ACCTAATACA-ACTTAAA-AGT-GCTGATCCGT--TAATATGGATTATATCAA-----ATGAAA--A--TCAT---GAGTTTACCGTTCAA-TTATGCCAA-AA-T-TTA--ATTTT-AATC--TCGATACAA-GAACAC-AACACAC-TTATAGAATAT-A-C-CATGCCTAGTCA------TATT----TA--G-
gi|9 : a-A-TTATGCCAAGTA-C-TTA--ATTGTAAATC--TCAATACAA-GAA----AACATAC--TGTTTAATAT-AACTCATGTCTAGTTA------TATTTAGATA--G-A-CTACAACAT--AA-ATT-CTTAA------TGCATGTTCTAA---ACAT-G--CGA----ACA-AT--TA---
blockSeqs : TCA A G C ATCGAGTA . A . A GT A G . C T A . TTT ATT C T A A A TT A AC T A A C A C A T . ATTCCAC G C C . T A G G AT A TTTTAA . A . C TC A G AACA A CACCT A AACTCGCAG CG T A G CA TA CG T A T CT T A T CTAGTA TAGA TA A G GATTTAATACTC GATAT T CC GCATATATATACTACAA AC T T A G C A C T CATG C C GATA TTCTTCTTTTTTATT GTTTA . AA T AG TA G A CC TG G TGAG GAGAC A TGGTGACTG T
blockSeqs : CT . . G G . A . A . . G . C . A . . T T T A . . TT . AC . . . . . T . . . CACA . C C . G A . . T . . . A . C T A G TG A . A TTCCTG CA A A . T C . . A . T T . . . . . . . TAAAGTTCTTA AA . . AACTACTATA A . A A . C . . . . G C GATA AGCTTTGT . . A T . . . A . . G . C . . .
blockSeqs : . . . . . . . . . . A . . T T T A . . T . AC . . . . . T . . . TCGC . T T . G A . . A . . . T . A T A G TA A . G ATCATG TG . . . T . . . C . A G . . . . . . . AATATTATTA . . . GGCACATTA . . A . . C . . . . . C GTTA GTTTGT . . A T . . . . . . G . C . . .
blockSeqs : . . . . T . . . . . T . C . . . . . . . . . CCTC . C C . A . . . A . . . A . C A . . TA A . A ACCG CA . . . C . . . A . T T . . . . . . . AAATTCTTAA . . . GAACAATTA . . . . . . . . . . . C ATA TTTTG . . A T . . . . . . G . C . . .
blockSeqs : . . . . T . A . . . . . . . . . CC . T C . . . . . . . . . T . . . . . T A . . ACC CG . . . C . . . A . T T . . . . . . . AGATTCTTA . . . GAGATTTA . . . . . . . . C TA TTTTT . . A T . . . . . . G . A . . .
blockSeqs : . . . . . . . . . . . CG . . . . . . . . . . . . . T . . . A . T A . . . . . . . AATTATTA . . . ACATAT . . . . . GT TTTTG . . A T . . . . . . A . C . . .
blockSeqs : . . . . T . . . C . . A . . . . . . . ATAAATTA . . . TCATAT . . . A T . . A T . . . . . . G . A . . .
blockSeqs : . . . C . . . . . T . . . . . . . AATTA . . . . . . A T . . . . . . T . A . . .
blockSeqs : . . . . . . A . . . . . . . G . C . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : A* T** T* CCC***** ** *** C** AATATTNTTA********** GAACATATTA********* C**** GTA* *** ***** C*****
originalCons : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGTTGAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-T----CGC-TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TA-C-TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--AA-ATT-TT--A------TGCATGTTCT-----ACAT-G--CG-----ACATAT--TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
finalCons : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAAA-GAAAAA-T---AAAT--AACTATTGGTAAAAATGAAATTCT-T-CCTAGGTGT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG-TCCC-----TAT-ACAACAA--TTTTAGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAA-ACCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--A--CC-----GAGTTTACCGTTC-A-TTATGCCAA-TAC--TTA--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACATAATATTNTTA----------TGCATGTTCT-----ACAT-G--CGAACATATTA---------AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGGC----TAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTGTA-TTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCTC-----TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
Alignments
lowQualScore : 111 1 3333 55555555 1 1 22 1 11 11 111 111 1 1 111 2222 11 111111 111 11 11 1111 4444444444444444444444 1 11 111111 333333 11111 444444444444444444444 2 11111 1111 1 2222 222222222222222222 11111 22 11111 111111 111111111
lowQualScore : 888 7 3 1111 55555555 0 3 0 3 33 0 22 33 2 8 88 8 444 111 3 7 1 6 6 6 6 0 5 22 5 5 5 5 5 7 5 5 000 6666 1 77 3 6 6 00 6 999999 111 1 99 00 3 0 33 0 1111 1 2222222222222222222222 33 8 3 4 4 4 00 66 4 4 4 0 88 1 4 4 111111 8888 55 4 4 333333 2 2 66 77777 4 4 000000000000000000000 5 0 0 1 0 8 66666 6 6 6 0000 0 8 1111 888888888888888888 00000 777 44 1 44 22222 3 6 44 44 1 7777 222222 3 333333333 3
lowQualScore : ... . . .... ........ . . . . .. . .. .. . . .. . ... ... . . . . . . . . . .. . . . . . . . . ... .... . .. . . . .. . ...... ... . .. .. . . .. . .... . ...................... .. . . . . . .. .. . . . . .. . . . ...... .... .. . . ...... . . .. ..... . . ..................... . . . . . . ..... . . . .... . . .... .................. ..... ... .. . .. ..... . . .. .. . .... ...... . ......... .
lowQualScore : 000 3 3 7777 33333333 0 2 0 2 88 0 55 88 5 0 88 0 000 888 8 3 7 7 7 7 7 3 7 11 7 7 7 7 7 1 7 7 000 4444 7 99 2 7 7 22 7 222222 777 0 22 22 2 8 33 1 7777 4 6666666666666666666666 66 9 3 4 4 4 66 11 4 4 4 1 66 0 4 4 555555 5555 55 0 4 111111 0 6 22 22222 4 4 222222222222222222222 7 1 8 0 4 0 77777 7 7 7 6666 0 8 8888 333333333333333333 00000 000 22 3 66 99999 3 7 66 66 8 1111 444444 3 333333333 3
consensus : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGT-GT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG---TCC-C-TATACAACAATTTT--AGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAAA-CCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--ACC-----GAGTTTACCGTTC-A-TTATGCCAA-TAC-TT-A--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT-AA---ATTATT-ATGCATGTTCT-----ACAT-G-CG-ACATAT----TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
Reference ( family-328 ) : TTTGGAAAATTAAGTACATACTTTNC-GCACAAAAGATCATTCAATTTC-GAAAAATACCTGC--AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGC--C-TACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAACTATTGGTAAAAATGAAATTCT-T-CCTAGGT-GT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-A-TTT-TTACTCGA-ATG---TCC-C-TATACAACAATTTT--AGAGGAGAGTT-TT-TAAACAA-GA-TTTTT------AAAA---CCTNTCCAAA-CCTAGCACT-ACTTAAACAATGGCTGATCTGT--TAACATGGATTATGTCAA-----ATGAAA--ACC-----GAGTTTACCGTTC-A-TTATGCCAA-TAC-TT-A--ATTGTAAATT--TCAATACAA-GAAAAC-AACATAC-TTGTNGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT-AA--TATTNTT-ATGCATGTTCT-----ACAT-G-CGAACATAT----TA---AT--TATTG-TATATTTTATATAATTGGATAT-ATTTGATGG----CTAAC-TCTCTG-TTC-ATCATGCC----ATG-CAACTCAGTG-TATTTTCTC---TTTTT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTCTAT
gi|1 : TTTGGAAAATTAAATTCATACTTTAA-GTACATAATATCATTCTATTTT-GAAAAATACCTGCCCAATTTAAAAAGCCAGGATA-----------CTCACTAAATTCAGCAATCCAGTAATCACTGCT-C-TACGCGGTAGTAAAAAAGGCAAATA-TCAACAGAAAAAAT---AAA----ACTATTGGTAAAATTGAGCTTCT-T-CCTAGGTCGT-GAGAGAGTGTGTCAATAC-TGTACCTCAA-GTTC-AACAT-AAGA-CGAATTAC-A-TTT-TAACTCGA-ATG---TTCTC-TATAAAATAATTTTTTAGAGGAGAGTT-TT-TGAATAA-GA-TTTAA------AAAAACCCTTCTCCAATTCCTAGCAAT-ATTTAA-CAATG-CTGATTTGT--TTGCATGGATTATG------------AAA--ATCCT---GAATTTGCTGTTC-AATCATGCCAA-TAT-TTTG--ATCGTAAATT--ACAATACAA------C-AACATGT-ACATAGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--------------TGCATGTTCT-----ACAT-G-CATATATAT---------ATGCTATTG-AATATTTCATATAATTGG-TAT-ATTTGATGGCTAACTAAC-TTTCTG-TTC-ATCATGTC----ATG-CAACT--GT--TCTTTTCTC---GTTTG----------TTAT-----CCGGCTTTGTTT-ATGTGATTTCGGACA--CGTGTAT-AC-AT--AT--CATGATGC----TCC
gi|10 : aacttttgggaaaatgtcagtacctgttatatatgcaatgtTGG-----TAAT-TTTTTG-TAC-CTCGGGCCCATGATG-CA-CTCAGGA-TATTTTCT--------T----------TTGT-----C---CTTTATTTA-TGCGATTTTG-ACC--C-----TGAT-GT--AT---ATGAT--------CT----CATGT-GGGCCCAAATT---------GG-TGAATAAATA-CTCTa
gi|11 : aat-TGTACCTCAT-GTTC-A-CAG-AAGA-TGAA-TGC-ACTTT-TTACTCGA-ATG---TCC-A-GTGACTACAATTTT--ATAGGAGAGTT-TT-TAAACAATGA-TTTTT--------AA---CCTATCC-AA-CCTAGCACT-ACTTAtc
gi|12 : ATGCC----ATG-CAACT--GT--TATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGACA--CTA---T-AT-GT--AT--CATGATGC----TCCTGAGAC-TGC-GGGCCCAAATT---------GGATGACTAAATA-TT
gi|13 : ATGCC----ATG-CAACT----G-T-TTTTCTC---TTCTTCTTTTTTATTTTAT-----C---ATTTGTTTA-TGTAATGT-----A--T-----C-AT-G---AT--GATGATGC----TCCT----C-TGG-GGGCCCAAATT---------GTTTGAATAAATA-
gi|14 : TTGAATAT-AGC-CATGTCTAGTTA------TATT----TA--G-A-CTGCAAACT-A----ATTATT-ATGCATGTTCT-----ACAT-GCCCAAC-TACTA--TA---AT--AATTGTTATATTTgt
gi|15 : TTGTTTC---TTTTT----------TCA------C---CTTTGTTTA-TGTGAATT-GGACA--C-----T-AT-GA--AT--TATGATGC----TCCT----C-TAT-GGGCTCAACTT---------GGTTGAATAAATA-TTga
gi|16 : gcttTAT-----C---CTTTGTTTA-TGTGATGTTGAACA--C-----T-AT-GT--AT--CATGATGC----TCCT----C-TGT-GGGCCCAAATT---------AGTTGAATGAATATTTCTA
gi|17 : GTTTACCGTTC-AATTATGCCAA-TAT-TT-A--ATTGTAAATT--TTAACACAA-GAAAAC-AA-ATA
gi|18 : tacttaacaatgctgatctgtTTTGTTTA-TGTGATTTTGGACA--C-----T-AT-GT--AT--CATTATGG----TCCT----A-TGT-GGGCCCAAATT---------GGTTGAATAAATA-TTATAT
gi|19 : aGACA--C-----T-TT-GTCCAT--CATAATAC----TCCT----C-AGT-GGGCCCAA-CT---------GGTTGAATAAATA-TTCTA
gi|2 : tTTTGGAAAATTAAGTACATACTTTTCAGCACAAA-GATCTTTCAATTTC-GAAAAATACCT-C--AATTTAAAAAGCAAGGACAATCGAGTAATTCTCGCAAATATCAG-A-TT-AGTA-TCACTGT--CATACG-GGTAG--AAACAGGCAGATA-TGAA-AGAAAAA-T---AAA--TAGCCATTGGTAAAA-TGAAATTCT-T-CCTAGAT-GTTGAAAGATTTGGTCAATA--TGT-CCTCAG-GTTC-AACAG-AAGACTGAATTAC-A-TTT-TTACTCGATATA---TCA-CATATACAACAATTTT--AGAGGAGAGTTGTTGTAAACAT-GAATTTTT------AAAA---CCTATCCAAA-CCTAGCACTCACTTAAACAATGGCTGATCTGT--T-ACATGGATTATGTCAA-----ATGAAA--ACC-----GAGTTTACCATTC-A-TTATGCCAA-TACATT-AC-ATTGTAAATC--TCAATACAA-GAAAAC-ACAATGC-TTGTTGAATAT-AAT-CATGTCTGTTTA------T-TT----TA--GAA-CTGCAA-AT-AG---ATTCTT-ATGC-TGTT-T-----ACAT-G-CG-GCACAT----TA---AT--CATTG-T-TTTTTTACATATTTGAATAT-TTTTGATGA----CTAACATCTCTGCTTCTAGCATGTC-----TGCCAACTCAGTGATAATTTCTCG--TTTGT----------TTAT-----C---CTTTGTTTAATGTGATTTTGGACA--C-----T-ATAGT--AT--CATGATGC----T-CT----A-TGT-GGGTCCAAAT----------------GTAAATA-TTCTAT
gi|20 : TGTCTTGCTA------TATT----TA--G-A-CTGCAGCAT-A----ATTATT-----ATGTTCT-----ACAT-G-Ct
gi|21 : -TGT-GGGCCCAAATT---------GGTTGAAT-AATA-TTCTATaca
gi|3 : A-TGAA--TAAAAA-T---TAA--TAACTAT-GGTTAAA-TGAAATTCTATACCTAGGT-GT-TAGAGAGCCTGTCAATAC-TGTA--TCAATGTTC-AAC----AGA-TGATTTGC-A-TTTATTACTCGA-ATG---TTCGC-TATATAATAATTCT--AGAGG-------------ACA---C-TTTTT------AAAA---CCTTTTCAAA-ACTAGCAAT-GCTT-AACAAT-GCTGATCTG-----ACATGGATTATGTCAA-----GTG------------------TACTGTTCTA-TTATGCCAA-TAT-TT-A--ATTGTAAATT--TCAATACAA-AAACAC-AACATAT-ATGTGCAACAT-AGT-TATGTCTGGTTG------TATT----TA--G-A-TTGCAGCAT-GATTTAATACT-CTGCATGTACT-----ACAT-G-T--ACATAT---------AT--TTGTG-TGTATTTTATATGATTGT-TAG-GTTTGAGGG----CTAAT-TCTCTG-TTT-ATCATGCT----ATG-CAA--CAGTA-------------------------------------C---CTTTG-----TGTGATTTTGGACT--G-----T-AT-GC--AT--CATAATTC----TCCT-----------------AATT---------GGTTGAA-AAATA-TTtcta
gi|4 : CTCGCAAAATTCAG-AATT-AGTAATCACTGCGTC-TAC-------------AGGCAGATA-TGAA-AGAAAAT-TTTTAAA--TAACTAT-GGTAAAAATGAAATACT-T-CCTAGGT-GT-GAAAGAATTTGTCAATAC-TGTACCTCAG-GTTC-AACAG-AAGA-TGAATTAC-ATTTT-TTACTCGA-ATG---TCCTC-TATACAACAATTTT--AAAGGAGAGTT-TT-TAAACAA-TA-TTTTTTTTTAAAAAA---ACTATCCAAA-------AC-------AAC-ATGGATAATC--T--TGA----GATT--------------------ACC-------GTTCA-------A-TTATGGTAA-TAC-TT-C--ATTGTAAATT--TCAATACAC-GAAAAC-AACATAT-TTGTTGAATATAAGG-CATGTCTAGTTA------TATT----TA--G-A-CTGCAACAT--A--TA-AATT-ATGCATGTTCT-----ACAT-G-CT--CATAT---------AT--TATTG-TATACTTT
gi|5 : AATG-CTGATCTTTAACAACATGGAT-ATGTCAACACCTATGAAA--AACTCGCAGAGTT-AC---TC-A-TT----CAA-TAC-TT-ATAATTGTAAATGCGTCAATACAATGAAAACTAATATACCTTGTTGAATAA-AGT-CATGTC-AGTTA------TATC----TA--G-AGCTGCAACATTAA--AGTTCTT-ATGCATGTTCTGATATACATTG-TGAG-AT-T----TA---ATACTATTG-TATATTTTAC----TTAGATGTGATTTAAC----------C-TCTCTG-TTC-AGCATGTC----ATGGCAAATCAGTGATATGTTCTCAGCTTTGT----------TTATGTTTAC---CTT-GTT--ATGTTGGCTTGG-CAAGC-----T-ACAGC--ATTGCCTGAC-C----TGAT----A-TGTAGGGCTCAAACTTGGTGACTGGGTTGAATAAATA-t
gi|6 : ATCTGT--TAACATGGATTATGTCAA-----ATGGAATTCCT-----GAGTTTACCATTC-AATTATGCCAA-TAT-CT-A--ATTGTAAATT--GCAATACAA-GAAAAC-AGCATAC-TTGTAGAATAT-AGT-CGTGTCTAGTTACTAGTATATT----TATAG-A-CTGCAACAT-AA--TATTATT-ATGCATGTTCT-----ACAT-G-CGCATATATATACTACAAATA-TATTG-TATATTCTATATAATTGG-TAT-ATTTTATGG----CTAAC-TCCCTG-TTC-ATCATGTC----ATG-CAACTCAGTGTTATTTTCTC---TTTTG----------TTAT-----C---CTTTGTTT-ATGTGATTTTGGGCA--C-----T-AT-GT--AT--CATGTTGCTGAGTCCT----C-TTT-GGGCCCAAATT---------GGTTGAATAAATA-
gi|7 : atgctgattcaTTTGGAAAAGTAAGTACATACTTTCT-GCACAAAAGATCATTCAATTTCGGAAAAATACCTG---AATTTAAAAAGCAAGGACAG-------ATTCTCGCAAAATTCAG-AATT-AGTAATCACTGT--C-TACG-GGTAG--AAACAGGCAGATATTGAA-AGAAAAA-T---AAAATTAGC-AATGGTAAAAATGAAATTCT-T-CCTAGAT-GT-GAAAGAATTTGTCAACACATGTACCTCAG-GTTCAAACAGAAAGA-TGAATTAC-ATTTT-TTAC-CGA-ATGTATTCCAC-TATGTACCAAGTTT--A
gi|8 : acttttgggaaaatgttcgtacctgctatatgcaaggtTGATAAAAATGAAATTAT-T-CCGATGT-GT-GAAAGAATTTGTCGATAC-TG----TCAG-GTTC-AA-AA-AAGA-TAAATTACAA-TTT-TTACTTGA-ATG---CC---------------------GAA------T-TT-TAAACTA-GA-TTTTT------AAAG---CCTTTCCAAA-CCTAATACA-ACTTAAA-AGT-GCTGATCCGT--TAATATGGATTATATCAA-----ATGAAA--ATCAT---GAGTTTACCGTTCAA-TTATGCCAA-AAT-TT-A--ATTTT-AATC--TCGATACAA-GAACAC-AACACAC-TTATAGAATAT-A-C-CATGCCTAGTCA------TATT----TA--G-
gi|9 : a-A-TTATGCCAAGTAC-TT-A--ATTGTAAATC--TCAATACAA-GAA----AACATAC--TGTTTAATAT-AACTCATGTCTAGTTA------TATTTAGATA--G-A-CTACAACAT-AA---ATTCTTAATGCATGTTCTAA---ACAT-G-CGAACA-AT----TA---