lowQualScore : 11111111111111111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 333333 44444444444444444444 1 22222 11 333 1 44444 11 1 4444444 1 2222 1 11 1 1 444444 1 1 111 3333 1 1 11 2222222222 1 111 11 2222222222222222222222 44444 111 2222 1 11 33333333333333333333333333333 1111 111 666666666666666666 1 5555555555555555 1 11 11 1 11 1111 1 1 11111111111111111111111111111111111111111111111111 33 1 66666 1 111 88888888888888888888888888888888 1 11 11 1 1 2 1 1 1 4444444 1 11 22 2 2 777777777777777777777 555 4 4 4 1 444444444 11 66666666666 2222 6666666666666666 1 11 1 44444444444 1 3333333333333333333333333333333333 1 2 11 11 1 1 444444 77777777
lowQualScore : 3 5 4 66 66 4 4 55 55 4 111111 4 88 4 4 4 66 66 4 44444444444444444444 33 0 6 55555 3 33 3 0 444 0 3 3 88888 33 0 2222222 9 3 2 0 4444 0 33 0 55 0 2 2 222222 0 0 444 1111 0 0 33 0 9999999999 0 8 3 777 44 3 9999999999999999999999 66 11111 000 5555 0 11 66666666666666666666666666666 7777 8 8 444 8 8 444444444444444444 0 0000000000000000 0 22 99 0 33 8888 0 0 00000000000000000000000000000000000000000000000000 2 77 3 00000 0 777 3 00000000000000000000000000000000 2 6 0 6 22 33 0 0 2 2 7 0 3 3 3 0000000 3 88 7 88 0 0 222222222222222222222 4 222 0 0 0 6 5 777777777 88 33333333333 7 7 8888 6 6 3333333333333333 3 88 3 44444444444 0 3 8888888888888888888888888888888888 3 6 7 6 6 88 88 3 3 6 7 444444 6 88888888
lowQualScore : . . . .. .. . . .. .. . ...... . .. . . . .. .. . .................... .. . . ..... . .. . . ... . . . ..... .. . ....... . . . . .... . .. . .. . . . ...... . . ... .... . . .. . .......... . . . ... .. . ...................... .. ..... ... .... . .. ............................. .... . . ... . . .................. . ................ . .. .. . .. .... . . .................................................. . .. . ..... . ... . ................................ . . . . .. .. . . . . . . . . . ....... . .. . .. . . ..................... . ... . . . . . ......... .. ........... . . .... . . ................ . .. . ........... . . .................................. . . . . . .. .. . . . . ...... . ........
lowQualScore : 4 0 4 11 11 4 0 55 55 4 000000 4 11 4 4 4 11 11 4 77777777777777777777 55 0 0 00000 2 22 5 2 555 0 2 2 88888 88 0 0000000 2 2 5 0 0000 0 88 0 88 0 5 5 555555 0 0 888 2222 0 0 22 8 8888888888 0 8 2 555 00 2 2222222222222222222222 88 22222 222 8888 0 00 66666666666666666666666666666 0000 0 0 000 0 0 555555555555555555 0 5555555555555555 0 55 88 0 88 5555 0 0 22222222222222222222222222222222222222222222222222 5 55 3 00000 0 555 2 00000000000000000000000000000000 5 5 0 5 55 88 0 0 5 5 8 7 3 3 3 3333333 3 33 3 88 0 0 000000000000000000000 0 000 0 0 0 0 0 000000000 33 77777777777 3 3 3333 7 7 7777777777777777 3 33 3 77777777777 7 3 7777777777777777777777777777777777 3 7 3 7 7 33 33 3 3 7 3 777777 0 00000000
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--A-GTC-ATC-GTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA---T-T-TT-TA---TTTATTTCGCTTCGTTCCAAAAATATGGA-----CATATAT-TCANGAACTCGGT-AGATGTT-CACTCTTAGTGCAG---AA--TCTAT-ACAAAAA-----CACTACTTTTATTCCC-CTTG---AAA-TCT--AAAAA-CAGCAAAGCG-GGTATGAAAA--ATA-TATC-AT-TAT-A-TAACG--T-TAAA-CAA-AT-AAAA-----TA--GGCA-TCTTCTGAAATA-A-ATN-TTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAACCTC-C-GCTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GG-TTA---TC----GTTCTTGAA----TTTC-ACTCG-A---TT-A-TCG-----------CT-GG--GGGCGC-TGCGTTGTCAAGACG-T-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAG-CTCC--TGT---------TTT-T--G--GTCAA-CG----------A-----TACAATATTCCGGCGCA--GTGTGA-TTTATCCTCGANC--TTGT-CTAA---AGGAAACTA--------------ACCTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCACTGATGA-TAGAAGGA-GG-CA-TGCA--G-NA-TGG-AG--CAGTTGG-TAATGAATGAAGAAAGCTAGAGNCCCCNAGCTACACGGCANAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCANNNNNNNNNNNNNATCTGCACATTTAGGAAAT-TATAACGAATG--TTTACT-T------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--AC--ATGTG-GCAAG--AAGTTTCATACTCT-CAGCAGTT--ACGCG----CCTGATAT-TTTTATAT--------ACTGAAACT-NCATCT--TT-CAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACG--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGA--AT--ACCTAAATACGATCT--CACAA
Reference ( gi|2 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-A-GTC-ATC-ATAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA---T-T-TT-T----TTTATTTCACTTCGTTCCAAAAATATGGA-----CATATAT-TCATGAACTTGG--AGATGTT-CACTCTTAGTGC-----AA--TCTAT-ACAAAA------CACTACTTTTATTCCC-CTTG---AAA-TCT--AAAAA-CAGCAAAGCG-GGTATGAAAA--AT--TATC-AT-TAT-A-TAACG--T-TAAA-CAA-AT-AAAA-----TA--GGCA-TCTTCTGAAATA-A-ATA-TTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAACC-C---GCTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GG-TTA---TC----GTTCTTGAA----TTTC-ACTCG-A---TT-A-TCG-----------CT-A---GGGCGC-TGCGTTG-CAAGACG-T-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAG-CT----TG----------TTT-T--G--GTCAA-CG----------A-----TACAATATTCCGGCGCAG-GTGTGA-TTTATCCTCA-----TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCACTGATGATTAGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-AGAT--CGAG-----CAACATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACATT-AAAAAATATATAACGAATG--TTTATTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--AC--ATGTG-GCAAG--AAGTTTCATACTCT-CAGCAGTT--ACGCG----CCTGATGT-TTT-------------ACTCAAACT-GCATCT--TC-CAT-TAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGA--GT--ACCTAAACA-GGTCCGGCACAATC
gi|10 : GTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--A-GTC-ATC-ATAA-TATGTTTA-GG--AAATA--TGTTA-A-GTAA---T-T-TT-TA---TTTATTTCACTTCG
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--A-GTT-ATC-ATAA-TATGTTTA-GG--AAATA--TGCCA-A-G
gi|9 : gtacgGTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-A-GT--ATT-CCAATTATGCTTA-GGCAAAGTAGCTGCCA-A-TAAA---T-TATC-TCTCATTTATTTTGCTT
gi|15 : aaacgGTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAA-G-ATCGATC-ATAA-TATGTT-A-GG--AATGA--TGCCA-AAGTAA---T-T-TT-TAT--TTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCAT-TATATCAGCCACTCAGTCGGATGTT-C-CTTTTAG-GCTGGCAAA--TCTAT-ACGGAAACAAGCCAC-ACTTTTATTACCGCTTACCAAAA-TCT--AAAAAACAGCAAAGCGAGGTATGAAAAGAATA-TATC-ATCTAT-AATAACGGCTATAAA-CAACAT-AAGAGGAGATATTGGCAATCTTCTGAAATA-T-ATT-TTTTTTTGCCATATTTTAATCCATCAGGACATTA-AAAACC-CACGGCTAACATGGTGTTCGA-TTTTTTCACTCACATTTTTCGTGA-TTAAGATCCGAGGTCATTAAAGAAATTTC-ACTCG-A---TT-A-TCG-----------CT-GAGGGGGCGC-TGCGTTGTCAAGACGGT-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CT-TAAAG-CTTCC-TG----------TTTCC--G--GTCAA-CG----------ATACAGTACAATATTCCGGCGCA--GTGTGA-TTTATCCACAAGC--TTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCACTGATGA-TAGAAGGATGG-CATTGCA--GAGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCT--AGATCCCCAG-----CGG-ATAACA
gi|18 : tactggtaTCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|7 : CCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--TTCAA-A--------------------TTTA---------GTTC-AAAATTATGGA-----CAGATAT-TTAAGAACTTGGA-AGAGATT-CACGCTTAGTGCA----AA--TCTAT-ACAAA-----------ACTT----------TTG---AAA-CCT--AAAAA-CA----------GTATGAAAA--TA--TATC-AT-CAT-G-TAACA--A-TTAA-CAA-ATGAAAA-----AA--GACA-TGCTCTAACATGCA-ACA-TTT-------------------------------TAAAACCTC---GCC---AT--T-TTCGA-TTGT--CA------------------------------TTCTTGAA----TTTC-AGTCG-A---TG-A-TCT-----------CTAA---GGGCGC-TGTGTTGTCA----------A--GT-GCA-CAG-AATATAG-TA--GA--C-CC-AAAAG-CT----TGTGGTTGTCCTTTT-T--GTAGTGTA-GG-----------------ACAATATTCCG--ACAGAGTGT
gi|12 : AATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTA-TTT-ATTTGTAA-TATGC--------AAATA--TACAA-A-GT-----------------TTTATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--A-GTT-ATC-GCAA-TATGTTTA-GC--AAATG--TGCCACA-GTAA---T-T-TT-TG---TTTATTTTGCT
gi|4 : TTTCGTGA-TAAGTCC--AGTTGTT-CA-CGA--A-TGA--TCCCATATTT--GCATAC--A--A-GTC-ATC-ATAA-TTTGTTTA-GG--AAATA--TGCCA-AAGTAAATTT-T-TTAT----TTTATT-CAATTCGTTC-AAAAATAAGGA-----CATATAT--CATGAATTTCGT-CGATGTTTCACTCTTAGTGC-----AAAATCTATTACAAAAA-----CACTACTTTTATTCCC-CTT----AAA-TCT--AAAAA-C-GCAAAGCG-G-TATGAAAA--ATATTATC-AT-TAT-A-TAACG--T-TAAA-CAA-AT-AACA-----TA--GGCA-T-TTCTGAAATA-A-ATATTTTTTTGA--AAGTTTTTAT--AT---AACATTTTAAAACCTC---GCTAA-ATG-T-TTCGATTTTT--CAT---CATTTTC---GG-TTA---TC----GTTCTTGAA----TTTC-ACTCG-ATTTTT-ATTCGTCTTCGAAAACCT-G---GGGCGCTTGCGTTGTCAAGA-G-TCC-ACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAG-TTCTGCTG----------TTC-TGCG--GTCAATCGGACTCACAGCG-----TACAATATTCCGGCGCA--GTGTGATTTTATCCTCAGTC--TTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCACTGATGA-TAGAAGGA-GGACA-TGCATTG-CA-TGG-AGTTCAGTTGG-
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAA--AT-AAGTC-ATC-ATAA-TATGTTTAAGG--AAATA--TGCCA-A-GTAA---TAT-TT-TA---TTTATTTCAATTCGTTCCAAAAATATGGA-----CATATAT-TCATGAACTTGG--AGATGTT-CACTCTTAGTGCAA---AA--TCTAT-ACAAAA------CACTACTTTTATTCCC-CTTG---AAACTCTAAAAAAA-CAGCAAAGCG-GGTAT--AAA--ATA-TATCAAT-TATAA-TAGCGT-T-TAAACCAA-AT--AAA-----TA---GCA-TCTTCTG-AATA-ATATT-TTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAAC-CTT-GCTAA-ATG---TTCGA-ATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAA---TTAA-TCG-----------CT-AG--GGGCGC-TGCGTTGTCAAGACG-T-CAA--GT-GCG--AG--AAATGG-CG--GA--TACC-AAAAGCCT----TGT---------TTT-T--G--GTCAA-CG----------A-----TACAATATTCCGGCGCA--GTGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCACTGATGA-TAGAGGGA-GG-CA-TGCA--G-AA-TGGAAG--CAA--AG--AATGAATGAAGAAAGCTAGAGTC--CGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCAgta
gi|16 : --CAT--ACATTTTC---GG-TGA---TC----GTTCTTGAA----TTTC-ACTCG-A---TT-A-TCatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|14 : -----TTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACT--TAATTA
gi|5 : agccATCTGCACATTTAGGAAAT-TATAACGAATG--TTT--TAT------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTAC--ATGTG-GCAAG--AAGTTTCATACTAT-CAGCAGTT--ACGC------CTGATAT-TTTTATAT--------AATGTAACT-CTATTA--TCTCATATAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGA--AT--ACCTAAATACGATCT--CACAAagatagacgt
gi|6 : AAT-TATAACGAATG--TCTAT---------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A---ATGTATGCAAG--AATAGTCATACTCT-CAGCAGTT--A--CG----CCTGATAT-TTTTATA---------ACTCAA--T-A-ATCT--TT-CAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGA--A---ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|1 : gtAATGCATTTACTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACA--CC--------CT--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATCTCATT-AAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA
Alignments
lowQualScore : 111111 1111111 22222 22 11 2 222222222 1111 11 11 11 1 1111 222222 11 1 111111 11 11 222 22 11111 222 111 11111 1111 1111 111 1 444444444444444 111 11 11 1111 3333333333333333 11 33333333333 22222 1 22222 111 555555555555555555555555555555 11 111 1 1 1 22222222 1 11 11 2 2 4444 44444 1 1 1 2 1111111111111 1 1 11 11 5555555555555 2222 3333333333333 11 1 11 1 11 333333 44444444444 111 1111 1 11 111 1 1 33333 11
lowQualScore : 2 4 4 55 55 4 3 55 55 0 4 555555 4 66 4 2 4 4 55 55 4 4 4 6666666 0 4 33 3 00000 8 11 1 2 33 8 0 11 8 6 8 444444444 0 8 7777 8 99 0 33 5 11 88 8 8 6 5555 8 8 8 8 000000 11 3 8 0 5 222222 11 1 11 555 0 00 8 0 8 33333 99 99 000 111 11111 4444 4444 6 888 3 111111111111111 8 0 0 5 111 99 8 8 8 0 8 11 3333 8 4444444444444444 8 11 8 88888888888 00000 8 0 77777 8 444 0 444444444444444444444444444444 8 3 8 3 8 11 8 8 8 444 8 0 0 0 33333333 0 33 3 77 3 3 6 7777 1 4 11111 1 5 5 5 0 3333333333333 3 5 0 33 33 6666666666666 3 3 1111 2 9999999999999 2 33 0 33 0 33 888888 3 00000000000 2 3 777 4444 0 55 3 2 2 33 555 0 0 2 3 00000 2 33
lowQualScore : . . . .. .. . . .. .. . . ...... . .. . . . . .. .. . . . ....... . . .. . ..... . .. . . .. . . .. . . . ......... . . .... . .. . .. . .. .. . . . .... . . . . ...... .. . . . . ...... .. . .. ... . .. . . . ..... .. .. ... ... ..... .... .... . ... . ............... . . . . ... .. . . . . . .. .... . ................ . .. . ........... ..... . . ..... . ... . .............................. . . . . . .. . . . ... . . . . ........ . .. . .. . . . .... . . ..... . . . . . ............. . . . .. .. ............. . . .... . ............. . .. . .. . .. ...... . ........... . . ... .... . .. . . . .. ... . . . . ..... . ..
lowQualScore : 0 4 0 55 55 0 6 00 00 8 0 777777 0 33 0 1 0 0 55 55 0 0 0 3333333 8 4 66 5 00000 0 66 0 8 88 0 8 00 0 4 0 000000000 8 0 2222 0 00 8 00 6 00 88 0 0 0 2222 0 0 0 0 888888 00 2 0 0 6 444444 00 0 00 000 8 00 0 8 0 22222 00 22 555 777 88888 2222 2222 7 333 3 444444444444444 0 8 8 0 888 00 0 0 0 8 0 00 0000 0 0000000000000000 0 00 0 88888888888 00000 0 0 22222 0 000 8 888888888888888888888888888888 0 2 0 2 0 00 0 0 0 000 0 0 0 0 22222222 0 88 2 33 7 7 7 7777 0 0 55555 0 5 5 5 0 0000000000000 0 5 0 88 88 5555555555555 2 2 2222 5 8888888888888 5 88 0 88 0 88 888888 2 55555555555 5 2 555 8888 0 00 2 5 5 88 888 0 0 5 2 88888 5 88
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCC-A-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATG-TTCACTCTTAG--TG-CAAAATCTA-TACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATA-TATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAACCC-CG-CTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TCG----------CTA--GGGGCGC-TGCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCA-GTGTGA-TTTATCCTCAA--TCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GA-TAGAGGGA-GG-CA-TGCA--G-AA--TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAGAG---CCGAGCNACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTT-A-CTT-------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
Reference ( family-3262 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCC-A-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCANGAACTCGGT-AGATG-TTCACTCTTAG--TG-CAGAATCTA-TACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--ATA-TATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-NTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAACCTCCG-CTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TCG----------CTG--GGGGCGC-TGCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCA-GTGTGA-TTTATCCTCGA--NCTTGT-CTAA---AGGAAACTA--------------ACCTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GA-TAGAAGGA-GG-CA-TGCA--G-NA--TGG-AG--CAGTTGG-TAATGAATGAAGAAAGCTAGAGNCCCCNAGCTACACGGCANAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCANNNNNNNNNNNNNATCTGCACATTTAGGAAAT-TATAACG--AATG--TTT-A-CTT-------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATATTTTTATA------TA---CTGAAACTN-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACG--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAAATA--AG-TC-A-TCATAA-TATGTTTAAGG--AAATA--TGCC-A-A-GTAA--TA---TTTTATTT-ATTTCAATTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATG-TTCACTCTTAG--TG-CAAAATCTA-TACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAACTCTAAAAAAACAGCAAAGCG-GGTAT--AAA--ATA-TATCAAT-TATAATAGCG--T-TTAAACCAA-AT-AAA------TA--G-CA-TCTTCTGAA-TAATAT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAACCTTG-CTAA-ATG-T-T-CGA-ATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAA--TTAATCG----------CTA--GGGGCGC-TGCGTTGTCAAGACG-T-CAA-GT-GCG--AG-AAA-TGG-CG--GA--TACC-AAAAGC--C--TTG-------TTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCA-GTGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GA-TAGAGGGA-GG-CA-TGCA--G-AA--TGGAAG--CAA--AG--AATGAATGAAGAAAGCTAGAGT--CCGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCA
gi|1 : T-TGTAACTTTAATGCATTT-A-CTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACACCC----------T--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATC-TCATTAAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|10 : cgaaatgatcccatatttttgcataaataagtcatcataatatgtttaaggaaatatgccaagtaatattttatttatttcaattcgttccaaaaatatggacatatattcatgaacttggagatgttcactcttagtgcaaaatctatacaaaacactacttttattccccttgaaactctaaaaaaacagcaaagcgggtataaaatatatcaattataatagcgtttaaaccaaataaatagcatcttctgaataatattttttttgaaagttttaatataacattttaaaaaccttgctaaatgttcgaatttcatcattttcggtttatgtttcttgaatttcaactcgaattaatcgctaggggcgctgcgttgtcaagacgtcaagtgcgagaaatggcggataccaaaagccttgtttttggtcaacgatacaatattccggcgcagtgtgatttatcctcgaagtcttgtctaaaggaactaacttattacctcgggaagtgtcagagagacatgtacatgcatctggcgtcactgatgatagagggaggcatgcagaatggaagcaaagaatgaatgaagaaagctagagtccgagctacacaacaaaacatgtgcataatcacgcagatcaactgcatcGTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGTT-A-A-GTAA--T----TTTTATTT-ATTTCACTTCGgagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--AG-TT-A-TCATAA-TATGTTTA-GG--AAATA--TGCC-A-A-G
gi|12 : gtacgAATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTAT-TT-ATTTGTAA-TATGC--------AAATA--TACA-A-A-GT--------------TTT-ATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--AG-TT-A-TCGCAA-TATGTTTA-GC--AAATG--TGCC-ACA-GTAA--T----TTTTGTTT-ATTTTGCT
gi|14 : CTTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACTTAATTAAGA-TAGA
gi|15 : agcGTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCAcgt
gi|16 : --CAT--ACATTTTC---GGTG-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TC
gi|18 : TCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|2 : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGCC-A-A-GTAA--T----TTTT-TTT-ATTTCACTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATG-TTCACTCTTAG--TG-CA--ATCTA-TACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--AT--TATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-ATTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAC--CCG-CTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TCG----------CT---AGGGCGC-TGCGTTG-CAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-----TG--------TTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAGGTGTGA-TTTATCCTCA-----TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GATTAGAGGGA-GG-CA-TGCA--GAAA--TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-AGA--TCGAGCAA-----CATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACA-TTAAAAAATATATAACG--AATG--TTT-ATTTT-------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTT-----------TA---CTCAAACTG-CATC-T--TCCAT-TAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAG--T--ACCTAAACA-GGTCCGGCACAA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AGATCGA-TCATAA-TATGTT-A-GG--AATGA--TGCC-A-AAGTAA--T----TTTTATTTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCATTATAT-CAGCCACTCAGTCGGATG-TTC-CTTTTAGGCTGGCA-AATCTA-TACGGAAACAAGCCACACTTTTATTACCGCTTACCAAAA-TCTAAAAAA-CAGCAAAGCGAGGTATGAAAAGAATA-TATCA-TCTATAATAACGGCTAT-AAAC-AACAT-AAGAGGAGATATTGGCAATCTTCTGAAATAT-AT-TTTTTTTTGCCATATTTTAATCCATCAGGACATTA-AAAACCCACGGCTAACATGGTGTTCGA-TTTTTTCACTCACATTTTTCGTGATT-AAGATCCGAGGTCATTAAAGAAATTTCA-CTCGA---TTA-TCG----------CTGAGGGGGCGC-TGCGTTGTCAAGACGGT-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CT-TAAAGCTTC--CTG-------TTTC-CG--GTCAA-CG----------ATACAGTACAATATTCCGGCGCA-GTGTGA-TTTATCCACAA--GCTTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCAC-TGAT---GA-TAGAAGGATGG-CATTGCA--G-AGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCTAGA--TCCCCAGCtc
gi|4 : tactggtaTTTCGTGA-TAAGTCC--AGTTGTT-CA-CG---AATGA--TCCCATA-TTT-GCATAC--A--AG-TC-A-TCATAA-TTTGTTTA-GG--AAATA--TGCCAA-A-GTAAATT----TTTTATTT-TATTCAATTCGTT-CAAAAATAAGGA-----CAT-ATA-TCATGAATTTCGT-CGATGTTTCACTCTTAG--TG-CAAAATCTATTACAAAAACA---C-TACTTTTATTCCC-CTT----AAA-TCTAAAAA--C-GCAAAGC--GGTATGAAAA--ATATTATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AACA-----TA--GGCA-T-TTCTGAAATAA-ATATTTTTTTGA--AAGTTTTTAT--AT---AACATTTTAAAACCT-CG-CTAA-ATG-T-TTCGATTTTT--CAT---CATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGATTTTTATTCGTCTTCGAAAACCT--GGGGCGCTTGCGTTGTCAAGA-G-TCCACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAGTT-CTGCTG-------TTCTGCG--GTCAATCGGACTCACAGCGTACA-----ATATTCCGGCGCA-GTGTGATTTTATCCTCAG--TCTTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCAC-TGAT---GA-TAGAAGGA-GGACA-TGCATTG-CA--TGG-AGTTCAGTTGG-ggataaca
gi|5 : ATCTGCACATTTAGGAAAT-TATAACG--AATG--TTTTA---T-------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTACA--TGTG-GCAAGAA--GTTTCATACTATC-AGCAGTTA--CGC------CTGATATTTTTATA------TA---ATGTAACTC-TATTAT--CTCATATAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAAgta
gi|6 : AAT-TATAACG--AATG--TCT-A---T-------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A-A--TGTATGCAAGAA--TAGTCATACTCTC-AGCAGTTA--CGC------CTGATATTTTTATA-------A---CTCAA--TA--ATC-T--TTCAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGAA-----ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|7 : gtCCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--T-TC-A-A----------------ATTT-A---------GTTC-AAAATTATGGA-----CAG-ATATTTAAGAACTTGGA-AGAGA-TTCACGCTTAG--TG-CA-AATCTA-TACAAA----------ACTT----------TTG---AAA-CCTAAAAA--CA----------GTATG-AAA--ATA-TATCA-T-CATG-TAACA--A-T-TAAC-AA-ATGAAAA-----AA--GACA-T-----------------------------GCTCTAAC--ATGC-AACATTTTAAAACCT-CG-C----------------------------CATTTTC---GATT-G---TC----ATTCTTGAA----TTTCA-GTCGA---TGA-TCT----------CTA--AGGGCGC-TGTGTTGTCA---------A--GT-GCA-CAG-AATATAG-TA--GA--C-CC-AAAAGCT-T--GTGGTTGTCCTTTT-TGTAGTGTA-GG------------ACA-----ATATTCCGACAGA-GTGTaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
gi|9 : GTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-AG-T--A-TTCCAATTATGCTTA-GGCAAAGTAGCTGCC-A-A-TAAA--TTATCTCTCATTT-ATTTTGCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA
Alignments
lowQualScore : 111111 1111111 22222 1 22 11 222222222 1111 11 11 11 1111 222222 11 1 11 11 222 1111 11111 22222222 111 11111 1111 1111 22222222222222222222 111 111 11 11 1111 333333333333333 11111 33333333333 22222 1 11111 111 555555555555555555555555555555 11 111 1 1 1 11 22 1 11 11 1 1 11 33333 1 1 1 1 1 1 11 11 555555555555 2222 3333333333333 11 1 11 1 11 333333 44444444444 111 1111 1 1 11 11 1 1 33333 11
lowQualScore : 2 4 4 55 55 4 3 55 55 4 555555 4 66 4 2 4 4 55 55 4 8 6666666 0 4 33 6 3 00000 8 0 1 33 8 0 11 5 0 8 444444444 0 8 7777 8 0 88 0 8 5 11 0 8 8 8 44 5555 8 8 8 8 000000 11 3 8 0 5 999999 11 1 11 555 0 8 7777 0 8 33333 1 33333333 111 11111 4444 4444 6 6 77777777777777777777 444 8 0 0 5 111 99 8 8 8 0 8 11 3333 8 333333333333333 55555 8 88888888888 00000 8 0 88888 8 444 0 222222222222222222222222222222 8 3 8 3 8 11 8 8 8 444 8 0 0 0 33 33 0 33 3 77 3 3 77 11111 1 5 5 5 5 1 5 0 33 33 666666666666 3 3 1111 2 9999999999999 2 33 0 33 0 33 888888 3 66666666666 1 3 666 4444 0 5 3 2 2 33 33 0 0 2 3 00000 2 33
lowQualScore : . . . .. .. . . .. .. . ...... . .. . . . . .. .. . . ....... . . .. . . ..... . . . .. . . .. . . . ......... . . .... . . .. . . . .. . . . . .. .... . . . . ...... .. . . . . ...... .. . .. ... . . .... . . ..... . ........ ... ..... .... .... . . .................... ... . . . . ... .. . . . . . .. .... . ............... ..... . ........... ..... . . ..... . ... . .............................. . . . . . .. . . . ... . . . . .. .. . .. . .. . . .. ..... . . . . . . . . .. .. ............ . . .... . ............. . .. . .. . .. ...... . ........... . . ... .... . . . . . .. .. . . . . ..... . ..
lowQualScore : 0 4 0 55 55 0 6 00 00 0 777777 0 33 0 1 0 0 55 55 0 0 3333333 8 4 66 7 5 00000 0 6 0 88 0 8 00 6 8 0 000000000 8 0 2222 0 8 66 8 0 6 00 8 0 0 0 44 2222 0 0 0 0 888888 00 2 0 0 6 666666 00 0 00 000 8 0 2222 8 0 22222 0 00000000 777 88888 2222 2222 7 7 00000000000000000000 888 0 8 8 0 888 00 0 0 0 8 0 00 0000 0 222222222222222 44444 0 88888888888 00000 0 0 55555 0 000 8 222222222222222222222222222222 0 2 0 2 0 00 0 0 0 000 0 0 0 0 88 88 0 88 2 33 3 3 00 55555 0 5 5 5 0 0 5 0 88 88 555555555555 2 2 2222 5 8888888888888 5 88 0 88 0 88 888888 2 55555555555 0 2 888 8888 0 0 2 5 5 88 88 0 0 5 2 88888 5 88
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAGAN-CCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTT-ACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
Reference ( family-3262 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCCC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AATCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAA--TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAGAG-CCGAGCNACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTT-ACTT-------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAAATA--AG-TC-A-TCATAA-TATGTTTAAGG--AAATA--TGCCA-A-GTAA--TA---TTTTATTT-ATTTCAATTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAACTCTAAAAAAACAGCAAAGCG-GGTAT--AAA--ATAT-ATCAAT-TATAATAGCG--T-TTAAACCAA-AT-AAA------TA--G-CA-TCTTCTGAA-TAATAT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAACCTT---GCTAA-ATG-T-T-CGAATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAATT---AAT-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CAA-GT-GCG--AG-AAA-TGG-CG--GA--TACC-AAAAGC--C--TTG-------TTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAA--TGGAAG--CAA--AG--AATGAATGAAGAAAGCTAGAGTCCGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCA
gi|1 : T-TGTAACTTTAATGCATTT-ACTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACACCC----------T--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATC-TCATTAAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|10 : cgaaatgatcccatatttttgcataaataagtcatcataatatgtttaaggaaatatgccaagtaatattttatttatttcaattcgttccaaaaatatggacatatattcatgaacttggagatgttcactcttagtgcaaaatctatacaaaacactacttttattccccttgaaactctaaaaaaacagcaaagcgggtataaaatatatcaattataatagcgtttaaaccaaataaatagcatcttctgaataatattttttttgaaagttttaatataacattttaaaaaccttgctaaatgttcgaatttcatcattttcggtttatgtttcttgaatttcaactcgaattaatcgctaggggcgctgcgttgtcaagacgtcaagtgcgagaaatggcggataccaaaagccttgtttttggtcaacgatacaatattccggcgcagtgtgatttatcctcgaagtcttgtctaaaggaactaacttattacctcgggaagtgtcagagagacatgtacatgcatctggcgtcactgatgatagagggaggcatgcagaatggaagcaaagaatgaatgaagaaagctagagtccgagctacacaacaaaacatgtgcataatcacgcagatcaactgcatcGTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGTTA-A-GTAA--T----TTTTATTT-ATTTCACTTCGgagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--AG-TT-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-G
gi|12 : gtacgAATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTAT-TT-ATTTGTAA-TATGC--------AAATA--TACAA-A-GT--------------TTT-ATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--AG-TT-A-TCGCAA-TATGTTTA-GC--AAATG--TGCCACA-GTAA--T----TTTTGTTT-ATTTTGCT
gi|14 : CTTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACTTAATTAAGAT-AGA
gi|15 : agcGTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCAcgt
gi|16 : --CAT--ACATTTTC---GGTG-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------C
gi|18 : TCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|2 : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTT-TTT-ATTTCACTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAA--TCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--AT-T-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-ATTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCC----GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGG-CGCT-GCGTTG-CAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-----TG-------TTTT--G--GTCAA-CG----------ATACA-----ATATTCCGGCGCAGGTGTGA-TTTATCCTC--A---TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GATTAGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAAGA-TCGAGC-----AACATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACATT-AAAAAATATATAACG--AATG--TTT-ATTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTT-----------A---CTCAAACTG-CATC-T--TCCAT-TAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAG--T--ACCTAAACA-GGTCCGGCACAA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AGATCGA-TCATAA-TATGTT-A-GG--AATGA--TGCCA-AAGTAA--T----TTTTATTTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCATTATAT-CAGCCACTCAGTCGGATGTT-C-CTTTTAGGCTGGCAAATCTAT-ACGGAAACAAGCCACACTTTTATTACCGCTTACCAAAA-TCTAAAAAA-CAGCAAAGCGAGGTATGAAAAGAATAT-ATCA-TCTATAATAACGGCTAT-AAAC-AACAT-AAGAGGAGATATTGGCAATCTTCTGAAATAT-AT-TTTTTTTTGCCATATTTTAATCCATCAGGACATT--AAAA-ACCCACGGCTAACATGGTGTTCGATTTTTTCACTCACATTTTTCGTGATT-AAGATCCGAGGTCATTAAAGAAATTTCA-CTCGA-TT---A-T-------CG-----CTGAGGGGGCGCT-GCGTTGTCAAGACGGT-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CT-TAAAGCTTC--CTG-------TTTC-CG--GTCAA-CG----------ATACAGTACAATATTCCGGCGCAG-TGTGA-TTTATCCAC--AAGCTTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCAC-TGAT---GAT-AGAAGGATGG-CATTGCA--GAGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCTAGAT-CCtc
gi|4 : tactggtaTTTCGTGA-TAAGTCC--AGTTGTT-CA-CGA--A-TGA--TCCCATATTT--GCATAC--A--AG-TC-A-TCATAA-TTTGTTTA-GG--AAATA--TGCCA-AAGTAAATT----TTTTATTT-TATTCAATTCGTTC-AAAAATAAGGA-----CAT-ATAT-CATGAATTTCGT-CGATGTTTCACTCTTAG--TGCAAAATCTATTACAAAAACA---C-TACTTTTATTCCC-CTT----AAA-TCTAAAAA--C-GCAAAGCG-G-TATGAAAA--ATATTATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AACA-----TA--GGCA-T-TTCTGAAATAA-ATATTTTTTTGA--AAGTTTTTAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTTT-CAT---CATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TTTTTA-TTCGTCTTCGAAAACCT---GGGGCGCTTGCGTTGTCAAGA-G-TCCACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAGTT-CTGCTG-------TTCTGCG--GTCAATCGGACTCACAGCGTACA-----ATATTCCGGCGCAG-TGTGATTTTATCCTC--AGTCTTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCAC-TGAT---GAT-AGAAGGA-GGACA-TGCATTGCA--TGG-AGTTCAGTTGG-ccagcggataaca
gi|5 : ATCTGCACATTTAGGAAAT-TATAACG--AATG--TTTTA--T-------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTACA--TGTG-GCAAGAA--GTTTCATACTATC-AGCAGTTA--CGC------CTGATATTTTTATA------TA---ATGTAACTC-TATTAT--CTCATATAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAAgta
gi|6 : AAT-TATAACG--AATG--TCT-A--T-------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A-A--TGTATGCAAGAA--TAGTCATACTCTC-AGCAGTTA--CGC------CTGATATTTTTATA-------A---CTCAA--TA--ATC-T--TTCAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGAA-----ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|7 : gtCCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--T-TCA-A----------------ATTT-A---------GTTC-AAAATTATGGA-----CAG-ATATTTAAGAACTTGGA-AGAGATT-CACGCTTAG--TGC-AAATCTAT-ACAAA----------ACTT----------TTG---AAA-CCT-AAAAA-CA----------GTATG-AAA--ATAT-ATCA-T-CAT-GTAACA--A-T-TAAC-AA-ATGAAAA-----AA--GACA-T-----------------------------GCTCTAAC--ATGC-AACATTTTAAAA-CCTC---GC---------------------------CATTTTC---GATT-G---TC----ATTCTTGAA----TTTCA-GTCGA-TG---A-T-------CT-----CTA--AGGGCGCT-GTGTTGTCA---------A--GT-GCA-CAG-AATATAG-TA--GA--C-CC-AAAAGCT-T--GTGGTTGTCCTTTT-TGTAGTGTA-GG------------ACA-----ATATTCCGACAGAG-TGTaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
gi|9 : GTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-AG-T--A-TTCCAATTATGCTTA-GGCAAAGTAGCTGCCA-A-TAAA--TTATCTCTCATTT-ATTTTGCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA
Alignments
lowQualScore : 111111 1111111 22222 1 22 11 222222222 1111 11 11 11 1111 222222 11 1 11 11 222 111 11111 22222222 111 11111 1111 1111 22222222222222222222 111 111 11 11 1111 333333333333333 11111 33333333333 22222 1 11 111 555555555555555555555555555555 11 111 1 1 1 2222222 1 11 11 1 1 11 22222 1 1 1 1 1 1 11 11 33333333333 2222 3333333333333 11 1 11 1 11 333333 44444444444 111 1111 1 11 11 1 1 33333 11
lowQualScore : 2 4 4 55 55 4 3 55 55 4 555555 4 66 4 2 4 4 55 55 4 8 6666666 0 4 33 6 3 00000 8 0 1 33 8 0 11 5 0 8 444444444 0 8 7777 8 0 88 0 8 5 11 0 8 8 8 44 5555 8 8 8 8 000000 11 3 8 0 5 999999 11 1 11 555 0 8 3 444 0 8 33333 1 33333333 111 11111 4444 4444 6 6 77777777777777777777 444 8 0 0 5 111 99 8 8 8 0 8 11 3333 8 333333333333333 55555 8 88888888888 00000 8 0 11 66 8 444 0 222222222222222222222222222222 8 3 8 3 8 11 8 8 8 444 8 0 0 0 1111111 0 33 3 77 3 3 44 66666 1 5 5 5 5 1 5 0 33 33 66666666666 3 3 1111 2 9999999999999 2 33 0 33 0 33 888888 3 00000000000 1 3 666 4444 0 55 3 2 2 33 33 0 0 2 3 00000 2 33
lowQualScore : . . . .. .. . . .. .. . ...... . .. . . . . .. .. . . ....... . . .. . . ..... . . . .. . . .. . . . ......... . . .... . . .. . . . .. . . . . .. .... . . . . ...... .. . . . . ...... .. . .. ... . . . ... . . ..... . ........ ... ..... .... .... . . .................... ... . . . . ... .. . . . . . .. .... . ............... ..... . ........... ..... . . .. .. . ... . .............................. . . . . . .. . . . ... . . . . ....... . .. . .. . . .. ..... . . . . . . . . .. .. ........... . . .... . ............. . .. . .. . .. ...... . ........... . . ... .... . .. . . . .. .. . . . . ..... . ..
lowQualScore : 0 4 0 55 55 0 6 00 00 0 777777 0 33 0 1 0 0 55 55 0 0 3333333 8 4 66 7 5 00000 0 6 0 88 0 8 00 6 8 0 000000000 8 0 2222 0 8 66 8 0 6 00 8 0 0 0 44 2222 0 0 0 0 888888 00 2 0 0 6 666666 00 0 00 000 8 0 8 000 8 0 22222 0 00000000 777 88888 2222 2222 7 7 00000000000000000000 888 0 8 8 0 888 00 0 0 0 8 0 00 0000 0 222222222222222 44444 0 88888888888 00000 0 0 00 88 0 000 8 222222222222222222222222222222 0 2 0 2 0 00 0 0 0 000 0 0 0 0 0000000 0 88 2 33 3 3 33 55555 0 5 5 5 0 0 5 0 88 88 22222222222 2 2 2222 5 8888888888888 5 88 0 88 0 88 888888 2 55555555555 0 2 888 8888 0 00 2 5 5 88 88 0 0 5 2 88888 5 88
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAGA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
Reference ( family-3262 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAGA-NCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAAATA--AG-TC-A-TCATAA-TATGTTTAAGG--AAATA--TGCCA-A-GTAA--TA---TTTTATTT-ATTTCAATTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAACTCTAAAAAAACAGCAAAGCG-GGTAT--AAA--ATAT-ATCAAT-TATAATAGCG--T-TTAAACCAA-AT-AAA------TA--G-CA-TCTTCTGAA-TAATAT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAACCTT---GCTAA-ATG-T-T-CGAATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAATT---AAT-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CAA-GT-GCG--AG-AAA-TGG-CG--GA--TACC-AAAAGC--C--TTG-------TTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--G-AA-TGGAAG--CAA--AG--AATGAATGAAGAAAGCTAGAGTCCGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCA
gi|1 : T-TGTAACTTTAATGCATTTACTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACACCC----------T--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATC-TCATTAAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|10 : cgaaatgatcccatatttttgcataaataagtcatcataatatgtttaaggaaatatgccaagtaatattttatttatttcaattcgttccaaaaatatggacatatattcatgaacttggagatgttcactcttagtgcaaaatctatacaaaacactacttttattccccttgaaactctaaaaaaacagcaaagcgggtataaaatatatcaattataatagcgtttaaaccaaataaatagcatcttctgaataatattttttttgaaagttttaatataacattttaaaaaccttgctaaatgttcgaatttcatcattttcggtttatgtttcttgaatttcaactcgaattaatcgctaggggcgctgcgttgtcaagacgtcaagtgcgagaaatggcggataccaaaagccttgtttttggtcaacgatacaatattccggcgcagtgtgatttatcctcgaagtcttgtctaaaggaactaacttattacctcgggaagtgtcagagagacatgtacatgcatctggcgtcactgatgatagagggaggcatgcagaatggaagcaaagaatgaatgaagaaagctagagtccgagctacacaacaaaacatgtgcataatcacgcagatcaactgcatcGTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGTTA-A-GTAA--T----TTTTATTT-ATTTCACTTCGgagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--AG-TT-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-G
gi|12 : gtacgAATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTAT-TT-ATTTGTAA-TATGC--------AAATA--TACAA-A-GT--------------TTT-ATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--AG-TT-A-TCGCAA-TATGTTTA-GC--AAATG--TGCCACA-GTAA--T----TTTTGTTT-ATTTTGCT
gi|14 : --AGCCTTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACTTAATTAAGAT-AGA
gi|15 : GTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCAcgt
gi|16 : --CAT--ACATTTTC---GGTG-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------C
gi|18 : TCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|2 : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTT-TTT-ATTTCACTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAA--TCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--AT-T-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-ATTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CC-C---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGG-CGCT-GCGTTG-CAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-----TG-------TTTT--G--GTCAA-CG----------ATACA-----ATATTCCGGCGCAGGTGTGA-TTTATCCTC--A---TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GATTAGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAAG-ATCGAGC-----AACATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACA-TTAAAAAATATATAACG--AATG--TTTATTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTT-----------TA---CTCAAACTG-CATC-T--TCCAT-TAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAG--T--ACCTAAACA-GGTCCGGCACAA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AGATCGA-TCATAA-TATGTT-A-GG--AATGA--TGCCA-AAGTAA--T----TTTTATTTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCATTATAT-CAGCCACTCAGTCGGATGTT-C-CTTTTAGGCTGGCAAATCTAT-ACGGAAACAAGCCACACTTTTATTACCGCTTACCAAAA-TCTAAAAAA-CAGCAAAGCGAGGTATGAAAAGAATAT-ATCA-TCTATAATAACGGCTAT-AAAC-AACAT-AAGAGGAGATATTGGCAATCTTCTGAAATAT-AT-TTTTTTTTGCCATATTTTAATCCATCAGGACATT--AAAA-ACCCACGGCTAACATGGTGTTCGATTTTTTCACTCACATTTTTCGTGATT-AAGATCCGAGGTCATTAAAGAAATTTCA-CTCGA-TT---A-T-------CG-----CTGAGGGGGCGCT-GCGTTGTCAAGACGGT-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CT-TAAAGCTTC--CTG-------TTTC-CG--GTCAA-CG----------ATACAGTACAATATTCCGGCGCAG-TGTGA-TTTATCCAC--AAGCTTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCAC-TGAT---GAT-AGAAGGATGG-CATTGCA--GAGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCTAGA-TCCtc
gi|4 : tactggtaTTTCGTGA-TAAGTCC--AGTTGTT-CA-CGA--A-TGA--TCCCATATTT--GCATAC--A--AG-TC-A-TCATAA-TTTGTTTA-GG--AAATA--TGCCA-AAGTAAATT----TTTTATTT-TATTCAATTCGTTC-AAAAATAAGGA-----CAT-ATAT-CATGAATTTCGT-CGATGTTTCACTCTTAG--TGCAAAATCTATTACAAAAACA---C-TACTTTTATTCCC-CTT----AAA-TCTAAAAA--C-GCAAAGCG-G-TATGAAAA--ATATTATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AACA-----TA--GGCA-T-TTCTGAAATAA-ATATTTTTTTGA--AAGTTTTTAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTTT-CAT---CATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TTTTTA-TTCGTCTTCGAAAACCT---GGGGCGCTTGCGTTGTCAAGA-G-TCCACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAGTT-CTGCTG-------TTCTGCG--GTCAATCGGACTCACAGCGTACA-----ATATTCCGGCGCAG-TGTGATTTTATCCTC--AGTCTTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCAC-TGAT---GAT-AGAAGGA-GGACA-TGCATTG-CA-TGG-AGTTCAGTTGG-ccagcggataaca
gi|5 : ATCTGCACATTTAGGAAAT-TATAACG--AATG--TTT--TAT------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTACA--TGTG-GCAAGAA--GTTTCATACTATC-AGCAGTTA--CGC------CTGATATTTTTATA------TA---ATGTAACTC-TATTAT--CTCATATAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAAgta
gi|6 : AAT-TATAACG--AATG--TCTA---T------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A-A--TGTATGCAAGAA--TAGTCATACTCTC-AGCAGTTA--CGC------CTGATATTTTTATA-------A---CTCAA--TA--ATC-T--TTCAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGAA-----ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|7 : gtCCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--T-TCA-A----------------ATTT-A---------GTTC-AAAATTATGGA-----CAG-ATATTTAAGAACTTGGA-AGAGATT-CACGCTTAG--TGC-AAATCTAT-ACAAA----------ACTT----------TTG---AAA-CCT-AAAAA-CA----------GTATG-AAA--ATAT-ATCA-T-CAT-GTAACA--A-T-TAAC-AA-ATGAAAA-----AA--GACA-T-----------------------------GCTCTAAC--ATGC-AACATTTTAAAA-CCTC---GC---------------------------CATTTTC---GATT-G---TC----ATTCTTGAA----TTTCA-GTCGA-TG---A-T-------CT-----CTA--AGGGCGCT-GTGTTGTCA---------A--GT-GCA-CAG-AATATAG-TA--GA--C-CC-AAAAGCT-T--GTGGTTGTCCTTTT-TGTAGTGTA-GG------------ACA-----ATATTCCGACAGAG-TGTaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
gi|9 : GTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-AG-T--A-TTCCAATTATGCTTA-GGCAAAGTAGCTGCCA-A-TAAA--TTATCTCTCATTT-ATTTTGCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA
Alignments
lowQualScore : 111111 1111111 22222 1 22 11 222222222 1111 11 11 11 1111 222222 11 1 11 11 222 111 11111 22222222 111 11111 1111 1111 22222222222222222222 111 111 11 11 1111 333333333333333 11111 33333333333 22222 1 11 111 555555555555555555555555555555 11 111 1 1 1 2222222 1 11 11 1 1 1 1 22222 1 1 1 1 1 1 11 11 33333333333 2222 3333333333333 11 1 11 1 11 333333 44444444444 111 1111 1 11 11 1 1 33333 11
lowQualScore : 2 4 4 55 55 4 3 55 55 4 555555 4 66 4 2 4 4 55 55 4 8 6666666 0 4 33 6 3 00000 8 0 1 33 8 0 11 5 0 8 444444444 0 8 7777 8 0 88 0 8 5 11 0 8 8 8 44 5555 8 8 8 8 000000 11 3 8 0 5 999999 11 1 11 555 0 8 3 444 0 8 33333 1 33333333 111 11111 4444 4444 6 6 77777777777777777777 444 8 0 0 5 111 99 8 8 8 0 8 11 3333 8 333333333333333 55555 8 88888888888 00000 8 0 11 66 8 444 0 222222222222222222222222222222 8 3 8 3 8 11 8 8 8 444 8 0 0 0 1111111 0 33 3 77 3 3 3 3 6 66666 1 5 5 5 5 1 5 0 33 33 66666666666 3 3 1111 2 9999999999999 2 33 0 33 0 33 888888 3 00000000000 1 3 666 4444 0 55 3 2 2 33 33 0 0 2 3 00000 2 33
lowQualScore : . . . .. .. . . .. .. . ...... . .. . . . . .. .. . . ....... . . .. . . ..... . . . .. . . .. . . . ......... . . .... . . .. . . . .. . . . . .. .... . . . . ...... .. . . . . ...... .. . .. ... . . . ... . . ..... . ........ ... ..... .... .... . . .................... ... . . . . ... .. . . . . . .. .... . ............... ..... . ........... ..... . . .. .. . ... . .............................. . . . . . .. . . . ... . . . . ....... . .. . .. . . . . . ..... . . . . . . . . .. .. ........... . . .... . ............. . .. . .. . .. ...... . ........... . . ... .... . .. . . . .. .. . . . . ..... . ..
lowQualScore : 0 4 0 55 55 0 6 00 00 0 777777 0 33 0 1 0 0 55 55 0 0 3333333 8 4 66 7 5 00000 0 6 0 88 0 8 00 6 8 0 000000000 8 0 2222 0 8 66 8 0 6 00 8 0 0 0 44 2222 0 0 0 0 888888 00 2 0 0 6 666666 00 0 00 000 8 0 8 000 8 0 22222 0 00000000 777 88888 2222 2222 7 7 00000000000000000000 888 0 8 8 0 888 00 0 0 0 8 0 00 0000 0 222222222222222 44444 0 88888888888 00000 0 0 00 88 0 000 8 222222222222222222222222222222 0 2 0 2 0 00 0 0 0 000 0 0 0 0 0000000 0 88 2 33 3 3 3 3 7 55555 0 5 5 5 0 0 5 0 88 88 22222222222 2 2 2222 5 8888888888888 5 88 0 88 0 88 888888 2 55555555555 0 2 888 8888 0 00 2 5 5 88 88 0 0 5 2 88888 5 88
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
Reference ( family-3262 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAAATA--AG-TC-A-TCATAA-TATGTTTAAGG--AAATA--TGCCA-A-GTAA--TA---TTTTATTT-ATTTCAATTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAACTCTAAAAAAACAGCAAAGCG-GGTAT--AAA--ATAT-ATCAAT-TATAATAGCG--T-TTAAACCAA-AT-AAA------TA--G-CA-TCTTCTGAA-TAATAT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAACCTT---GCTAA-ATG-T-T-CGAATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAATT---AAT-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CAA-GT-GCG--AG-AAA-TGG-CG--GA--TACC-AAAAGC--C--TTG-------TTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--G-AA-TGGAAG--CAA--AG--AATGAATGAAGAAAGCTA-GAGTCCGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCA
gi|1 : T-TGTAACTTTAATGCATTTACTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACACCC----------T--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATC-TCATTAAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|10 : cgaaatgatcccatatttttgcataaataagtcatcataatatgtttaaggaaatatgccaagtaatattttatttatttcaattcgttccaaaaatatggacatatattcatgaacttggagatgttcactcttagtgcaaaatctatacaaaacactacttttattccccttgaaactctaaaaaaacagcaaagcgggtataaaatatatcaattataatagcgtttaaaccaaataaatagcatcttctgaataatattttttttgaaagttttaatataacattttaaaaaccttgctaaatgttcgaatttcatcattttcggtttatgtttcttgaatttcaactcgaattaatcgctaggggcgctgcgttgtcaagacgtcaagtgcgagaaatggcggataccaaaagccttgtttttggtcaacgatacaatattccggcgcagtgtgatttatcctcgaagtcttgtctaaaggaactaacttattacctcgggaagtgtcagagagacatgtacatgcatctggcgtcactgatgatagagggaggcatgcagaatggaagcaaagaatgaatgaagaaagctagagtccgagctacacaacaaaacatgtgcataatcacgcagatcaactgcatcGTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGTTA-A-GTAA--T----TTTTATTT-ATTTCACTTCGgagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--AG-TT-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-G
gi|12 : gtacgAATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTAT-TT-ATTTGTAA-TATGC--------AAATA--TACAA-A-GT--------------TTT-ATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--AG-TT-A-TCGCAA-TATGTTTA-GC--AAATG--TGCCACA-GTAA--T----TTTTGTTT-ATTTTGCT
gi|14 : --AGCCTTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACTTAATTAAGAT-AGA
gi|15 : GTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCAcgt
gi|16 : --CAT--ACATTTTC---GGTG-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------C
gi|18 : TCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|2 : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTT-TTT-ATTTCACTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAA--TCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--AT-T-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-ATTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CC-C---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGG-CGCT-GCGTTG-CAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-----TG-------TTTT--G--GTCAA-CG----------ATACA-----ATATTCCGGCGCAGGTGTGA-TTTATCCTC--A---TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GATTAGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAAGA-TC-GAGC-----AACATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACA-TTAAAAAATATATAACG--AATG--TTTATTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTT-----------TA---CTCAAACTG-CATC-T--TCCAT-TAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAG--T--ACCTAAACA-GGTCCGGCACAA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AGATCGA-TCATAA-TATGTT-A-GG--AATGA--TGCCA-AAGTAA--T----TTTTATTTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCATTATAT-CAGCCACTCAGTCGGATGTT-C-CTTTTAGGCTGGCAAATCTAT-ACGGAAACAAGCCACACTTTTATTACCGCTTACCAAAA-TCTAAAAAA-CAGCAAAGCGAGGTATGAAAAGAATAT-ATCA-TCTATAATAACGGCTAT-AAAC-AACAT-AAGAGGAGATATTGGCAATCTTCTGAAATAT-AT-TTTTTTTTGCCATATTTTAATCCATCAGGACATT--AAAA-ACCCACGGCTAACATGGTGTTCGATTTTTTCACTCACATTTTTCGTGATT-AAGATCCGAGGTCATTAAAGAAATTTCA-CTCGA-TT---A-T-------CG-----CTGAGGGGGCGCT-GCGTTGTCAAGACGGT-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CT-TAAAGCTTC--CTG-------TTTC-CG--GTCAA-CG----------ATACAGTACAATATTCCGGCGCAG-TGTGA-TTTATCCAC--AAGCTTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCAC-TGAT---GAT-AGAAGGATGG-CATTGCA--GAGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCTA-GA-TCCtc
gi|4 : tactggtaTTTCGTGA-TAAGTCC--AGTTGTT-CA-CGA--A-TGA--TCCCATATTT--GCATAC--A--AG-TC-A-TCATAA-TTTGTTTA-GG--AAATA--TGCCA-AAGTAAATT----TTTTATTT-TATTCAATTCGTTC-AAAAATAAGGA-----CAT-ATAT-CATGAATTTCGT-CGATGTTTCACTCTTAG--TGCAAAATCTATTACAAAAACA---C-TACTTTTATTCCC-CTT----AAA-TCTAAAAA--C-GCAAAGCG-G-TATGAAAA--ATATTATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AACA-----TA--GGCA-T-TTCTGAAATAA-ATATTTTTTTGA--AAGTTTTTAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTTT-CAT---CATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TTTTTA-TTCGTCTTCGAAAACCT---GGGGCGCTTGCGTTGTCAAGA-G-TCCACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAGTT-CTGCTG-------TTCTGCG--GTCAATCGGACTCACAGCGTACA-----ATATTCCGGCGCAG-TGTGATTTTATCCTC--AGTCTTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCAC-TGAT---GAT-AGAAGGA-GGACA-TGCATTG-CA-TGG-AGTTCAGTTGG-ccagcggataaca
gi|5 : ATCTGCACATTTAGGAAAT-TATAACG--AATG--TTT--TAT------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTACA--TGTG-GCAAGAA--GTTTCATACTATC-AGCAGTTA--CGC------CTGATATTTTTATA------TA---ATGTAACTC-TATTAT--CTCATATAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAAgta
gi|6 : AAT-TATAACG--AATG--TCTA---T------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A-A--TGTATGCAAGAA--TAGTCATACTCTC-AGCAGTTA--CGC------CTGATATTTTTATA-------A---CTCAA--TA--ATC-T--TTCAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGAA-----ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|7 : gtCCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--T-TCA-A----------------ATTT-A---------GTTC-AAAATTATGGA-----CAG-ATATTTAAGAACTTGGA-AGAGATT-CACGCTTAG--TGC-AAATCTAT-ACAAA----------ACTT----------TTG---AAA-CCT-AAAAA-CA----------GTATG-AAA--ATAT-ATCA-T-CAT-GTAACA--A-T-TAAC-AA-ATGAAAA-----AA--GACA-T-----------------------------GCTCTAAC--ATGC-AACATTTTAAAA-CCTC---GC---------------------------CATTTTC---GATT-G---TC----ATTCTTGAA----TTTCA-GTCGA-TG---A-T-------CT-----CTA--AGGGCGCT-GTGTTGTCA---------A--GT-GCA-CAG-AATATAG-TA--GA--C-CC-AAAAGCT-T--GTGGTTGTCCTTTT-TGTAGTGTA-GG------------ACA-----ATATTCCGACAGAG-TGTaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
gi|9 : GTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-AG-T--A-TTCCAATTATGCTTA-GGCAAAGTAGCTGCCA-A-TAAA--TTATCTCTCATTT-ATTTTGCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA
Alignments
lowQualScore : 111111 1111111 22222 1 22 11 222222222 1111 11 11 11 1111 222222 11 1 11 11 222 111 11111 22222222 111 11111 1111 1111 22222222222222222222 111 111 11 11 1111 333333333333333 11111 33333333333 22222 1 11 111 555555555555555555555555555555 11 111 1 1 1 2222222 1 11 11 1 1 1 1 22222 1 1 1 1 1 1 11 11 33333333333 2222 3333333333333 11 1 11 1 11 333333 44444444444 111 1111 1 11 11 1 1 33333 11
lowQualScore : 2 4 4 55 55 4 3 55 55 4 555555 4 66 4 2 4 4 55 55 4 8 6666666 0 4 33 6 3 00000 8 0 1 33 8 0 11 5 0 8 444444444 0 8 7777 8 0 88 0 8 5 11 0 8 8 8 44 5555 8 8 8 8 000000 11 3 8 0 5 999999 11 1 11 555 0 8 3 444 0 8 33333 1 33333333 111 11111 4444 4444 6 6 77777777777777777777 444 8 0 0 5 111 99 8 8 8 0 8 11 3333 8 333333333333333 55555 8 88888888888 00000 8 0 11 66 8 444 0 222222222222222222222222222222 8 3 8 3 8 11 8 8 8 444 8 0 0 0 1111111 0 33 3 77 3 3 3 3 6 66666 1 5 5 5 5 1 5 0 33 33 66666666666 3 3 1111 2 9999999999999 2 33 0 33 0 33 888888 3 00000000000 1 3 666 4444 0 55 3 2 2 33 33 0 0 2 3 00000 2 33
lowQualScore : . . . .. .. . . .. .. . ...... . .. . . . . .. .. . . ....... . . .. . . ..... . . . .. . . .. . . . ......... . . .... . . .. . . . .. . . . . .. .... . . . . ...... .. . . . . ...... .. . .. ... . . . ... . . ..... . ........ ... ..... .... .... . . .................... ... . . . . ... .. . . . . . .. .... . ............... ..... . ........... ..... . . .. .. . ... . .............................. . . . . . .. . . . ... . . . . ....... . .. . .. . . . . . ..... . . . . . . . . .. .. ........... . . .... . ............. . .. . .. . .. ...... . ........... . . ... .... . .. . . . .. .. . . . . ..... . ..
lowQualScore : 0 4 0 55 55 0 6 00 00 0 777777 0 33 0 1 0 0 55 55 0 0 3333333 8 4 66 7 5 00000 0 6 0 88 0 8 00 6 8 0 000000000 8 0 2222 0 8 66 8 0 6 00 8 0 0 0 44 2222 0 0 0 0 888888 00 2 0 0 6 666666 00 0 00 000 8 0 8 000 8 0 22222 0 00000000 777 88888 2222 2222 7 7 00000000000000000000 888 0 8 8 0 888 00 0 0 0 8 0 00 0000 0 222222222222222 44444 0 88888888888 00000 0 0 00 88 0 000 8 222222222222222222222222222222 0 2 0 2 0 00 0 0 0 000 0 0 0 0 0000000 0 88 2 33 3 3 3 3 7 55555 0 5 5 5 0 0 5 0 88 88 22222222222 2 2 2222 5 8888888888888 5 88 0 88 0 88 888888 2 55555555555 0 2 888 8888 0 00 2 5 5 88 88 0 0 5 2 88888 5 88
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
Reference ( family-3262 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAAATA--AG-TC-A-TCATAA-TATGTTTAAGG--AAATA--TGCCA-A-GTAA--TA---TTTTATTT-ATTTCAATTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAACTCTAAAAAAACAGCAAAGCG-GGTAT--AAA--ATAT-ATCAAT-TATAATAGCG--T-TTAAACCAA-AT-AAA------TA--G-CA-TCTTCTGAA-TAATAT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAAACCTT---GCTAA-ATG-T-T-CGAATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAATT---AAT-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CAA-GT-GCG--AG-AAA-TGG-CG--GA--TACC-AAAAGC--C--TTG-------TTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--G-AA-TGGAAG--CAA--AG--AATGAATGAAGAAAGCTA-GAGTCCGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCA
gi|1 : T-TGTAACTTTAATGCATTTACTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACACCC----------T--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATC-TCATTAAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|10 : cgaaatgatcccatatttttgcataaataagtcatcataatatgtttaaggaaatatgccaagtaatattttatttatttcaattcgttccaaaaatatggacatatattcatgaacttggagatgttcactcttagtgcaaaatctatacaaaacactacttttattccccttgaaactctaaaaaaacagcaaagcgggtataaaatatatcaattataatagcgtttaaaccaaataaatagcatcttctgaataatattttttttgaaagttttaatataacattttaaaaaccttgctaaatgttcgaatttcatcattttcggtttatgtttcttgaatttcaactcgaattaatcgctaggggcgctgcgttgtcaagacgtcaagtgcgagaaatggcggataccaaaagccttgtttttggtcaacgatacaatattccggcgcagtgtgatttatcctcgaagtcttgtctaaaggaactaacttattacctcgggaagtgtcagagagacatgtacatgcatctggcgtcactgatgatagagggaggcatgcagaatggaagcaaagaatgaatgaagaaagctagagtccgagctacacaacaaaacatgtgcataatcacgcagatcaactgcatcGTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGTTA-A-GTAA--T----TTTTATTT-ATTTCACTTCGgagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--AG-TT-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-G
gi|12 : gtacgAATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTAT-TT-ATTTGTAA-TATGC--------AAATA--TACAA-A-GT--------------TTT-ATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--AG-TT-A-TCGCAA-TATGTTTA-GC--AAATG--TGCCACA-GTAA--T----TTTTGTTT-ATTTTGCT
gi|14 : --AGCCTTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACTTAATTAAGAT-AGA
gi|15 : GTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCAcgt
gi|16 : --CAT--ACATTTTC---GGTG-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------C
gi|18 : TCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|2 : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTT-TTT-ATTTCACTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAA--TCTAT-ACAAAA-CA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--AT-T-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-ATTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CC-C---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGG-CGCT-GCGTTG-CAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-----TG-------TTTT--G--GTCAA-CG----------ATACA-----ATATTCCGGCGCAGGTGTGA-TTTATCCTC--A---TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GATTAGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAAGA-TC-GAGC-----AACATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACA-TTAAAAAATATATAACG--AATG--TTTATTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTT-----------TA---CTCAAACTG-CATC-T--TCCAT-TAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAG--T--ACCTAAACA-GGTCCGGCACAA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AGATCGA-TCATAA-TATGTT-A-GG--AATGA--TGCCA-AAGTAA--T----TTTTATTTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCATTATAT-CAGCCACTCAGTCGGATGTT-C-CTTTTAGGCTGGCAAATCTAT-ACGGAAACAAGCCACACTTTTATTACCGCTTACCAAAA-TCTAAAAAA-CAGCAAAGCGAGGTATGAAAAGAATAT-ATCA-TCTATAATAACGGCTAT-AAAC-AACAT-AAGAGGAGATATTGGCAATCTTCTGAAATAT-AT-TTTTTTTTGCCATATTTTAATCCATCAGGACATT--AAAA-ACCCACGGCTAACATGGTGTTCGATTTTTTCACTCACATTTTTCGTGATT-AAGATCCGAGGTCATTAAAGAAATTTCA-CTCGA-TT---A-T-------CG-----CTGAGGGGGCGCT-GCGTTGTCAAGACGGT-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CT-TAAAGCTTC--CTG-------TTTC-CG--GTCAA-CG----------ATACAGTACAATATTCCGGCGCAG-TGTGA-TTTATCCAC--AAGCTTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCAC-TGAT---GAT-AGAAGGATGG-CATTGCA--GAGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCTA-GA-TCCtc
gi|4 : tactggtaTTTCGTGA-TAAGTCC--AGTTGTT-CA-CGA--A-TGA--TCCCATATTT--GCATAC--A--AG-TC-A-TCATAA-TTTGTTTA-GG--AAATA--TGCCA-AAGTAAATT----TTTTATTT-TATTCAATTCGTTC-AAAAATAAGGA-----CAT-ATAT-CATGAATTTCGT-CGATGTTTCACTCTTAG--TGCAAAATCTATTACAAAAACA---C-TACTTTTATTCCC-CTT----AAA-TCTAAAAA--C-GCAAAGCG-G-TATGAAAA--ATATTATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AACA-----TA--GGCA-T-TTCTGAAATAA-ATATTTTTTTGA--AAGTTTTTAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTTT-CAT---CATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TTTTTA-TTCGTCTTCGAAAACCT---GGGGCGCTTGCGTTGTCAAGA-G-TCCACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAGTT-CTGCTG-------TTCTGCG--GTCAATCGGACTCACAGCGTACA-----ATATTCCGGCGCAG-TGTGATTTTATCCTC--AGTCTTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCAC-TGAT---GAT-AGAAGGA-GGACA-TGCATTG-CA-TGG-AGTTCAGTTGG-ccagcggataaca
gi|5 : ATCTGCACATTTAGGAAAT-TATAACG--AATG--TTT--TAT------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTACA--TGTG-GCAAGAA--GTTTCATACTATC-AGCAGTTA--CGC------CTGATATTTTTATA------TA---ATGTAACTC-TATTAT--CTCATATAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAAgta
gi|6 : AAT-TATAACG--AATG--TCTA---T------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A-A--TGTATGCAAGAA--TAGTCATACTCTC-AGCAGTTA--CGC------CTGATATTTTTATA-------A---CTCAA--TA--ATC-T--TTCAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGAA-----ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|7 : gtCCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--T-TCA-A----------------ATTT-A---------GTTC-AAAATTATGGA-----CAG-ATATTTAAGAACTTGGA-AGAGATT-CACGCTTAG--TGC-AAATCTAT-ACAAA----------ACTT----------TTG---AAA-CCT-AAAAA-CA----------GTATG-AAA--ATAT-ATCA-T-CAT-GTAACA--A-T-TAAC-AA-ATGAAAA-----AA--GACA-T-----------------------------GCTCTAAC--ATGC-AACATTTTAAAA-CCTC---GC---------------------------CATTTTC---GATT-G---TC----ATTCTTGAA----TTTCA-GTCGA-TG---A-T-------CT-----CTA--AGGGCGCT-GTGTTGTCA---------A--GT-GCA-CAG-AATATAG-TA--GA--C-CC-AAAAGCT-T--GTGGTTGTCCTTTT-TGTAGTGTA-GG------------ACA-----ATATTCCGACAGAG-TGTaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
gi|9 : GTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-AG-T--A-TTCCAATTATGCTTA-GGCAAAGTAGCTGCCA-A-TAAA--TTATCTCTCATTT-ATTTTGCTT
blockSeqs : A A A CT GT C T GT AT . CTATT A CG T A T . CA GC C A TTATC T CA C A GCCCT T T T TC T GC A T AACAAGCCA G ACCA . A A A GA T . C AA GCTA . . C G AGGAGA TT G A C A AATAT CC A CC CAG . C ACG C GTGTT T TTCACTCA CGT AAGA CGAG GAAA . . TTTATTCGTCTTCGAAAAC GAG T C GT CT C C T T GT TTT A TTGTGGTTGTCC TGTA T GACTCACAGCG GTACA G T . GC A CGC AATAATGGCCCCACACCCATCAAATTTTTA T A T T T TC G G T TAA T T A T GAGAC . TT T TT . . A . C . T . . . G T T A . . ATTTT T A CATA G CGTAGCCTACTGT C . T . . . GC T TA C A GC AT A CC A G G CA . . T G T T C GG
blockSeqs : A . . . . . . . . . CTTAC . C . A . . . . . A ATT . CG C A . . T G T . . C . AACAC . G . A . A . . . . A T . . . . A . G . C A AATA . T . GC . T . . TTT T CATA . A . . . . ATCG A . C TC . . . . . . T . TCTGCTG GCG . A . . . . AG . . ATCTAT . G . C . . . . . . . . . . TTGCA . . T T . . . . . . . . TAT T A . G CCT C . . . . . . T TA G A CT T . C A G G . . . . G T T C .
blockSeqs : A . . . . . . . . . CTAT . T . G . . . . . . T . TG C A . . . T A . . A . ACAC . G . . . A . . . . A T . . . . A . G . . A TATT . A . . . T . . TTT T CATA . A . . . . ATCG A . . T . . . . . . T . TTCCTG CG . A . . . . GT . . ACTTAT . G . C . . . . . . . . . . GAAA . . T . . . AT . . . . CCT . . . . . . . . A C . A T . C A . . . . . . . T . . .
blockSeqs : C . . . . . . . . . CTA . T . G . . . . . . T . CA . T . . . A . . . . . . . . . . . . . . . . G A . . . . A . A . . . . . . . . . . . . . . TCAT . A . . . . ATCT . . . . . . . . . . C . TTG G . . . . . . . . ATTTT . . . . . . . . . . .
blockSeqs : A . . . . . . . . . ATA . T . A . . . . . . T . CA . . . . G . . . .
blockSeqs : T . . . . . . . . . ATA . C . A . . . . . . T . TG
blockSeqs : A . . . . . . . . . CTA . C . A . . . . . . . . A
blockSeqs : . . . . . . . . . . CA . . . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . . . . . .
blockSeqs : . . .
blockSeqCons : CTA*** T****** ** ACAC***** ** A* A***** AT**** TTT** CATA**** A**** ATCG**************** T** ** T*** TTCG*********** CG*** **
originalCons : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAACA---C-TACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAA-AT-TTTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA-TT---A-T-------CG-----CTA--GGGGCGCT-GCGTTGTCAAGACG-T-CA--GT-GCG-CAG-AAAATGG-CG--GA--T-CC-AAAAGCT-C--CTG-------TTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
finalCons : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATACTA---AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAAT------TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--AGATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAACAC-----TACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAAATAAT----TTTTTTGA--AAGTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATGTTT--CGATTTTCATA----CATTTTC---GGTTA----TC----GTTCTTGAA----TTTCA-CTCGA-TTATCG----------------CTA--GGGGCGCT-GCGTTGTCAAGACGT--CA--GT-GCG-CAG-AAAATGG-CG--GAT---CC-AAAAGCTTCG-----------TTTTCG---GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA
Alignments
lowQualScore : 111111 1111111 22222 1 2222 11 3333333 1111 11 11 1 1111 222222 11 1 11 3333333 11 11 222 111 11111 222 111 11111 1111 1111 111 1 33333333333 111 11111111 11 11 1111 55555555555555 11111 33333333333 22222 1 11 111 555555555555555555555555555555 11 111 1 1 1 2222222 1 11 11 1 1 1 1 22222 1 1 1 1 1 1 11 11 33333333333 2222 3333333333333 11 1 11 1 11 333333 44444444444 111 1111 1 11 11 1 1 33333 11
lowQualScore : 2 4 4 55 55 4 3 55 55 4 555555 4 66 4 2 4 4 55 55 4 8 6666666 0 4 33 6 3 00000 8 0 1 5555 8 0 11 66 8 1111111 5 0 8 7777 8 99 0 8 5 11 0 8 8 8 6 5555 8 8 8 8 000000 11 3 8 0 11 4444444 11 11 8 11 555 0 8 3 444 0 8 33333 99 99 000 111 11111 4444 4444 6 888 3 88888888888 444 8 0 0 5 66666666 8 8 44 8 11 3333 11111111111111 55555 8 88888888888 00000 8 0 11 66 8 444 0 222222222222222222222222222222 8 3 8 3 8 11 8 8 8 444 8 0 0 0 1111111 0 33 3 77 3 3 3 3 6 66666 1 5 5 5 5 1 5 0 33 33 66666666666 3 3 1111 2 9999999999999 2 33 0 33 0 33 888888 3 00000000000 1 3 666 4444 0 55 3 2 2 33 33 0 0 2 3 00000 2 33
lowQualScore : . . . .. .. . . .. .. . ...... . .. . . . . .. .. . . ....... . . .. . . ..... . . . .... . . .. .. . ....... . . . .... . .. . . . .. . . . . . .... . . . . ...... .. . . . .. ....... .. .. . .. ... . . . ... . . ..... .. .. ... ... ..... .... .... . ... . ........... ... . . . . ........ . . .. . .. .... .............. ..... . ........... ..... . . .. .. . ... . .............................. . . . . . .. . . . ... . . . . ....... . .. . .. . . . . . ..... . . . . . . . . .. .. ........... . . .... . ............. . .. . .. . .. ...... . ........... . . ... .... . .. . . . .. .. . . . . ..... . ..
lowQualScore : 0 4 0 55 55 0 6 00 00 0 777777 0 33 0 1 0 0 55 55 0 0 3333333 8 4 66 7 5 00000 0 6 0 8888 0 8 00 44 0 8888888 6 8 0 2222 0 00 8 0 6 00 8 0 0 0 0 2222 0 0 0 0 888888 00 2 0 0 00 8888888 00 22 0 00 000 8 0 8 000 8 0 22222 00 22 555 777 88888 2222 2222 7 333 3 00000000000 888 0 8 8 0 88888888 0 0 00 0 00 0000 22222222222222 44444 0 88888888888 00000 0 0 00 88 0 000 8 222222222222222222222222222222 0 2 0 2 0 00 0 0 0 000 0 0 0 0 0000000 0 88 2 33 3 3 3 3 7 55555 0 5 5 5 0 0 5 0 88 88 22222222222 2 2 2222 5 8888888888888 5 88 0 88 0 88 888888 2 55555555555 0 2 888 8888 0 00 2 5 5 88 88 0 0 5 2 88888 5 88
consensus : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGGT-A-GATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAAA-----CACTACTTTTATTCCC-CTTG---AAA-TCTAAAAAA-CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATAATAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAA--ATA-AA--T-TTTTTT--GAAA-GTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TCG-----------CTA--GGGGCGC-TGCGTTGTCAAGACG-T-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CCAAAAGCT--------TC----GTTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
Reference ( family-3262 ) : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCGTAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTTATTT-ATTTCGCTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--A-GATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAA------CACTACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--ATAT-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAA--ATA-A---T-TTTTTT--GAAA-GTTTTAAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TCG-----------CTA--GGGGCGC-TGCGTTGTCAAGACG-T-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CCAAAAGCT--------TC----GTTTT-CG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTC--AGTCTTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTA-GA-TCCGAGCTACACAACANAACATGTGCACAATCACGCAGATCAACTGCATCTTGGTAACTTTAATGCATTTACTTTCATGAAAGGATAAAAATCNGCACATTTAGGAAAT-TATAACG--AATG--TTTACTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTTTTATA------TA---CTNAAACTG-CATC-T--TTCAT-TAAATATTCCTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAA
gi|1 : -CGA--AATGA--TCCCATATTTTTGCATAAATA--AG-TC-A-TCATAA-TATGTTTAAGG--AAATA--TGCCA-A-GTAA--TA---TTTTATTT-ATTTCAATTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--A-GATGTT-CACTCTTAG--TGCAAAATCTAT-ACAAAA------CACTACTTTTATTCCC-CTTG---AAACTCTAAAAAAACAGCAAAGCG-GGTAT--AAA--ATAT-ATCAAT-TATAATAGCG--T-TTAAACCAA-AT-AAA------TA--G-CA-TCTTCTGAATAATA-T---T-TTTTTT--GAAA-GTTTTAAT--AT---AACATTTTAAAAACCTT---GCTAA-ATG-T-T-CGA-ATTT--CAT---CATTTTC---GGTTTA---TG----TTTCTTGAA----TTTCAACTCGAA--TTAATCG-----------CTA--GGGGCGC-TGCGTTGTCAAGACG-T-CAA--GT-GCG--AG--AAATGG-CG--GA--TACCAAAAGCC--------TT----GTTTT-TG--GTCAA-CG----------ATACA-----ATATTCCGGCGCAG-TGTGA-TTTATCCTCGAAGTCTTGT-CTAA---AGG-AACTA--------------ACTTAT----------T-A-CCTCGGGA-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GAT-AGAGGGA-GG-CA-TGCA--G-AA-TGGAAG--CAA--AG--AATGAATGAAGAAAGCTA-GAGTCCGAGCTACACAACAAAACATGTGCATAATCACGCAGATCAACTGCATCTT-GTAACTTTAATGCATTTACTTTCA
gi|1 : T-TGTAACTTTAATGCATTTACTTTCAATGTAGTGTATA----ATGAGTGGACCACGGGGTGACACCC----------T--ACAGATGTG-ACAAGAAAAGTTTCATACTCTCCAGCAGTTAAACGTGTTGCCTTGATGTATTTATAATGTTATAAAACTGAAACTGGCATC-TCATTAAT-TAAATATTCCTGTC-TAATGGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACAACCGAAGCGTC-TTATGTAGATTAGGCC-AACTGAAGGTTAACCTAAATACGATCT--CACAAatgtagtgtataatgagtggaccacggggtgacaccctacagatgtgacaagaaaagtttcatactctccagcagttaaacgtgttgccttgatgtatttataatgttataaaactgaaactggcatctcattaattaaatattcctgtctaatggcagacatccttacaatgatctagttacctacgatctatgattcacacaaacaaccgaagcgtcttatgtagattaggccaactgaaggttaacctaaatacgatctcacaagagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|10 : cgaaatgatcccatatttttgcataaataagtcatcataatatgtttaaggaaatatgccaagtaatattttatttatttcaattcgttccaaaaatatggacatatattcatgaacttggagatgttcactcttagtgcaaaatctatacaaaacactacttttattccccttgaaactctaaaaaaacagcaaagcgggtataaaatatatcaattataatagcgtttaaaccaaataaatagcatcttctgaataatattttttttgaaagttttaatataacattttaaaaaccttgctaaatgttcgaatttcatcattttcggtttatgtttcttgaatttcaactcgaattaatcgctaggggcgctgcgttgtcaagacgtcaagtgcgagaaatggcggataccaaaagccttgtttttggtcaacgatacaatattccggcgcagtgtgatttatcctcgaagtcttgtctaaaggaactaacttattacctcgggaagtgtcagagagacatgtacatgcatctggcgtcactgatgatagagggaggcatgcagaatggaagcaaagaatgaatgaagaaagctagagtccgagctacacaacaaaacatgtgcataatcacgcagatcaactgcatcGTTCCACGTAAAAATCAGGCAAA--TCGCATTTCCGTGA-TAAGTCC--A--TGTT-CC-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGTTA-A-GTAA--T----TTTTATTT-ATTTCACTTCGgagggtagtttcttattatcaatgtaagttttttagtaagaattttgcatatataatacaagtaagaacacgagtattactttttgttgcaaattaaaattggttaaaatcctttatattgtttataacattctttgatagtaagggttcttgtgcctcgcctttcatgatggagtggtccatggttcaaacctgcggagggtgattttttttttttttttgcatgcatatattgtgtttcttgatacaaatttttgataggaacagattttt
gi|11 : agtacgGTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TCAGTCC--A--TGTT-CA-CGA--AATGG--TCCAATATTTT-GCATAA-TA--AG-TT-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-G
gi|12 : gtacgAATAAGGCAAAA-TTGCAATTTTGTGA-TAAGCCC--G--TATT-C----------------TCATATTTA-ATATAC-TATTAT-TT-ATTTGTAA-TATGC--------AAATA--TACAA-A-GT--------------TTT-ATTTCGCCTTAATCCAAAAATA
gi|13 : ATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TTCCATATTTT-GCAAAA-TA--AG-TT-A-TCGCAA-TATGTTTA-GC--AAATG--TGCCACA-GTAA--T----TTTTGTTT-ATTTTGCT
gi|14 : --AGCCTTAT-CGAT---AGGAAACGA--------------ATCTAT----------TTACCCTCATGG-GGTGTTAGA-----CA--TCG-ACAT-GCATCTGGCGTTACTTAATTAAGAT-AGA
gi|15 : GTTTCAGGTAAGAATCATACTAAA-TCCCATTTTCATGA-CAAGTTC--A--TGAA-TA-CGA--AATAG--TACCAcgt
gi|16 : --CAT--ACATTTTC---GGTG-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TC
gi|18 : TCCACGTAAAACTCGGGGAAAA-TCGCATTTCCTTG
gi|2 : GTTCCACGTAAAAATCAGGCAAAA-TCGCATTTTCGTGA-TAAGTCC--A--TGTT-CA-CGA--AATGA--TCCCATATTTT-GCATAC-TAT-AG-TC-A-TCATAA-TATGTTTA-GG--AAATA--TGCCA-A-GTAA--T----TTTT-TTT-ATTTCACTTCGTTCCAAAAATATGGA-----CAT-ATATTCATGAACTTGG--A-GATGTT-CACTCTTAG--TGCAA--TCTAT-ACAAAA------CACTACTTTTATTCCC-CTTG---AAA-TCTAAAAA--CAGCAAAGCG-GGTATGAAAA--AT-T-ATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AAAA-----TA--GGCA-TCTTCTGAA--ATA-AA--TATTTTTT--GAAA-GTTTTAAT--AT---AACATTTTAAAA-CC-C---GCTAA-ATG-T-TTCGA-TTTT--CAT--ACATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGA---TTA-TCG-----------CTA--GGG-CGC-TGCGTTG-CAAGACG-T-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CCAAAAGCT--------T-----GTTTT--G--GTCAA-CG----------ATACA-----ATATTCCGGCGCAGGTGTGA-TTTATCCTC--A---TTGT-CTAA---AGGAAACTA--------------ACTTAT----------T-ACCCTCGGGG-AGTGTCAGA-GAGACA--TGT-ACAT-GCATCTGGCGTCAC-TGAT---GATTAGAGGGA-GG-CA-TGCA--GAAA-TGG-AG--CAGTTGG-TAATG-ATGAAG-AAGCTAAGA-TC-GAGC-----AACATAACATGTGT-CAATCACGCAG-TCAAC-GCATCTTGGTAACTTTAATGCATTTATTTTCATGAAAGGATAAAAATCGGCACA-TTAAAAAATATATAACG--AATG--TTTATTTT------AGTGTATA----ATGAGTGGACCACGGGGTGACACCCC--------CT--ACA--TGTG-GCAAGAA--GTTTCATACTCTC-AGCAGTTA--CGCG----CCTGATGTTT-----------TA---CTCAAACTG-CATC-T--TCCAT-TAAATATT-CTGTCATAATAGCAGACATCCTTACAATGATCTAGTTACCTACGATCTATGATTC--ACACAAACA--CGAA-CGTC-TTATGTAGATTAGGCCTAACTGAG--T--ACCTAAACA-GGTCCGGCACAA
gi|3 : TCCACGTAAAA-TCAGGCAAAAATCGTATTT-CGTGAATAAGTCCCTA--TGT--CA-CGA--AATGA--TCCCATATTTT-GCATAC-TA--AGATCGA-TCATAA-TATGTT-A-GG--AATGA--TGCCA-AAGTAA--T----TTTTATTTTATTT-ACTTCGTTCCAAAA-CATGAAGCCCTCATTATAT-CAGCCACTCAGTCG-GATGTT-C-CTTTTAGGCTGGCAAATCTAT-ACGGAAACAAGCCAC-ACTTTTATTACCGCTTACCAAAA-TCTAAAAAA-CAGCAAAGCGAGGTATGAAAAGAATAT-ATCA-TCTATAATAACGGCTAT-AAAC-AACAT-AAGAGGAGATATTGGCAATCTTCTGAA--ATATA---T-TTTTTTTTGCCATATTTTAATCCATCAGGACATT--AAAA-ACCCACGGCTAACATGGTGTTCGA-TTTTTTCACTCACATTTTTCGTGATT-AAGATCCGAGGTCATTAAAGAAATTTCA-CTCGA---TTA-TCG-----------CTGAGGGGGCGC-TGCGTTGTCAAGACGGT-C-A--GT-GCG-CAG-AAAATGG-CG--GA--T-CTTAAAGCT--------TCCT--GTTTC-CG--GTCAA-CG----------ATACAGTACAATATTCCGGCGCAG-TGTGA-TTTATCCAC--AAGCTTGT-CTAACGCAGGAAACTA--------------ATTT-T----------T-ACCCTC-GGG-ATCGTCAGA-GAGACA--TGT-ACATGGCATCTGGCGTCAC-TGAT---GAT-AGAAGGATGG-CATTGCA--GAGACTGG-AG--CAGTTGGTTAATG-ATGAAG-AAGCTA-GA-TCCtc
gi|4 : tactggtaTTTCGTGA-TAAGTCC--AGTTGTT-CA-CGA--A-TGA--TCCCATATTT--GCATAC--A--AG-TC-A-TCATAA-TTTGTTTA-GG--AAATA--TGCCA-AAGTAAATT----TTTTATTT-TATTCAATTCGTTC-AAAAATAAGGA-----CAT-ATAT-CATGAATTTCGT-C-GATGTTTCACTCTTAG--TGCAAAATCTATTACAAAAA-----CACTACTTTTATTCCC-CTT----AAA-TCTAAAAA--C-GCAAAGCG-G-TATGAAAA--ATATTATCA-T-TATA-TAACG--T-T-AAAC-AA-AT-AACA-----TA--GGCA-T-TTCTGAA--ATA-AATAT-TTTTTT--GAAA-GTTTTTAT--AT---AACATTTTAAAA-CCTC---GCTAA-ATG-T-TTCGATTTTT--CAT---CATTTTC---GGTT-A---TC----GTTCTTGAA----TTTCA-CTCGATTTTTATTCGTCTTCGAAAACCT---GGGGCGCTTGCGTTGTCAAGA-G-TCC-ACTGTCGCGCCAGTTAAATGGTCGGTGATTT-CCAAAAAGT--------TCTGCTGTTCTGCG--GTCAATCGGACTCACAGCGTACA-----ATATTCCGGCGCAG-TGTGATTTTATCCTC--AGTCTTGTACTCA---ACGAAACTAAATAATGGCCCCACACCCATCAAATTTTTAT-ACCCTTGGAGTAGTGT--GATGAGACATCTGTGACCT-G-ATCTGGCGTCAC-TGAT---GAT-AGAAGGA-GGACA-TGCATTG-CA-TGG-AGTTCAGTTGG-ccagcggataaca
gi|5 : ATCTGCACATTTAGGAAAT-TATAACG--AATG--TTT--TAT------AGTGTATACATAATGAGTGGACCACGGGGTGACACCCCGTAGCCTACTGTACA--TGTG-GCAAGAA--GTTTCATACTATC-AGCAGTTA--CGC------CTGATATTTTTATA------TA---ATGTAACTC-TATTAT--CTCATATAAATATTC-TGTCATAATAGCAGACATCCTTACAATGATCTAGTGACCTACGATCTATGATCC--ACACAAACA--TGAA-TGTC-TTATTTAGATTAGGCCTAACTGAA--T--ACCTAAATACGATCT--CACAAgta
gi|6 : AAT-TATAACG--AATG--TCTA---T------AG-GT-TA----ATGAGTGATCCACGG--TGACACCCC--------CT--A-A--TGTATGCAAGAA--TAGTCATACTCTC-AGCAGTTA--CGC------CTGATATTTTTATA-------A---CTCAA--TA--ATC-T--TTCAT-TAAATATTCCTTTCATAATAGCAGACATCCTTACAATGATCTA-TTACCTAC---------TTCCAACACAAACG--CGAA-CGTCTTTATGTATATTA-GCCTAAATGAA-----ACCTAAATACGATCT--CACAAgagggtagtttcatatattacatgtagtttttagtagaatttgcatataatacaaataaaagacacaaatattactttttgtgcaaattaaagagttaaaatctcgtcaaattttatgcactcttggataaccaaggggttttgtgccacggcttgcatgagtgaggaccagggttcaatccttgcagagggtgatttttttttaaatttttacatgcatatattgtttttatacaagttatttcaaattaattttcgatatgaacagactttttttttaaatgtacagaattacattatt
gi|7 : gtCCTCGTAAAATTCGGGCAAAA-TCGCATTTTAGCGA-TAAGTCC--A--TTCT-CA-CAA--AATGA--TCCCATATTTT-GCACA----------------GTAA-TGTGCTTA-GT--GAATG--T-TCA-A----------------ATTT-A---------GTTC-AAAATTATGGA-----CAG-ATATTTAAGAACTTGG--AAGAGATT-CACGCTTAG--TGCAAA-TCTAT-ACAAA-----------ACTT----------TTG---AAA-CCTAAAAA--CA----------GTATG-AAA--ATAT-ATCA-T-CATG-TAACA--A-T-TAAC-AA-ATGAAAA-----AA--GACA-T---------------------------------GCTCTAAC--ATGC-AACATTTTAAAA-CCTC---GC----------------------------CATTTTC---GATT-G---TC----ATTCTTGAA----TTTCA-GTCGA---TGA-TCT-----------CTA--AGGGCGC-TGTGTTGTCA----------A--GT-GCA-CAG-AATATAG-TA--GA--C-CCAAAAGCTTGTGGTTGTC----CTTTT-TGTAGTGTA-GG------------ACA-----ATATTCCGACAGAG-TGTaagggtagtttcatattacatgtagtttttagtgtgaattgtatataatataaataatagacacaaaattactttttgtgcaatttaggagttaaaatccttataacaataaaatccattacttggatccaaagaggtttcgtgccactgctacaagaaagaggaccagggttcgaccttctgtggagaattcttttttcatttttaaatgcatatattttcttatacaagttatttcaaattattttatataaacgatatttttttttaatatacagaatggtacattgtt
gi|9 : GTTACAAGTAAAAATCAGACAAAA-TCGCATTTTCGTGA-TAAGTCC--A---GTTCCATCGAGTAATGAATTCCCATA--TT-GCATACTTAC-AG-T--A-TTCCAATTATGCTTA-GGCAAAGTAGCTGCCA-A-TAAA--TTATCTCTCATTT-ATTTTGCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAAATACGATCTCACAAGAGGGTAGTTCCTATTACATGTAGTTTTTAGTAGATTGCATATATAATACAAGTAAGACACGAGTATTACTTTTGTGCAAATTAAAAAGTTAAATCCTTAAATTGTTATACATTCTTTAGTAGTTAAGGGGTTTTGTGCCTCGCCTTGCATGAGTGAGGTCCAGAGTTCGATCCCGGCGGCGGGTGATTTTTTTTTTTTTTTTTTTTTGCATGCATATATTGTGTTCTTGATACAAATTTTTGATAGGAACAGATTTTTTTTTTTAAATGTACATTACATTTAT
Unaligned ( gi|17 ): GATCACAGGGACTTTTTACACATTTTGTTTTCAATGGAA