lowQualScore : 222 1 1 1 11 444444444444444444444444444444444444444444444444444 111 1 999999999999999999999999999999999999999999999999999999999999999999 22222 1111111 2222222 22222222222222
lowQualScore : 5 555 55 9 0 4 33 4 2 0 2 1 2 3 3 3 11 44 222222222222222222222222222222222222222222222222222 4 33 000 7 777777777777777777777777777777777777777777777777777777777777777777 44 33333 3 3 6666666 555 22 3 0000000 44444444444444 4 4 0
lowQualScore : . ... .. . . . .. . . . . . . . . . .. .. ................................................... . .. ... . .................................................................. .. ..... . . ....... ... .. . ....... .............. . . .
lowQualScore : 0 999 00 7 6 1 99 5 9 3 9 4 9 5 0 1 00 22 111111111111111111111111111111111111111111111111111 5 99 777 9 000000000000000000000000000000000000000000000000000000000000000000 22 22222 1 1 5555555 444 66 1 0000000 99999999999999 7 0 4
consensus : AGATTGGGAAATTAA-CAC-GATGGT--TTT-AATTTCACTATGT--TCACGATTT-ATTC-TTTTC-CCGCGAAATTAAA-CCCATAGTGA--AT------------GAT---AC-----ATTNAAA------------------ATATTTC--AATGC--TTTCGTAATCG---GAA--T-------------ATT-T---TAAA-----A--------T-------CCT------TTAA--CGTGAA-G---T-AA-AAC------C---ATCGCGATTA-TGCCCTTG-T-T-N-AAAA--CA---T-G-T-AAAATTT-TAGCACCGTGGAATTA
Reference ( gi|5 ) : AGATTGGGAAATTAA-CA--AATGGT--TTTTAATTTCAATATAT--TCATGATTT-ATTC-TTTCC-CCGCGAAATTTAA-CCTGTAGTGA--AT------------GAT---AC-----ATTTAAA------------------ATACTTC--AATGT--TTTCTTAATCA---GAA--TC------------ATT-T---TAAA-----A--------T-------CCT------TTAA--CGTGAA-G---T-AA-AAA------C---ATCGCGATTA-TGTCCTTG-T-T-T-AAAA--CA---T-G-T-AAAATTT-TAGCACCATGGAATTATT
gi|6 : AGATTGGGAAATTAA-CA--AATGGT--TTT-AATTTCAATATAT--TCATGATTT-ATTC-TTTCC-CCGCGAAATTTAA-CCTGTAGTGA--AT------------GAT---AC-----ATTTAAA------------------ATACTTC--AATGTTGTTTCTTAATCA---GAA--TC------------ATT-T---TAAA-----A--------T-------GCT------TTAA--CGTGAA-G---T-AA-AAA------C---ATCGCGATTA-TGTCCTTG-T-T-TAAAAA--CA---T-G-TAAAAATTT-TAGCACCATGGA
gi|2 : AGATTGGTAAATTAA-CATGGATGATGGTTTTAATTTGACTGT-T--AAACGATTT-ATTC-CTTTT-CCAGGAAATTAAA-CCCATGGTGA--AT------------ACT---ACG----ACT-----------------------TACTTC--AATGC--TTTTGTAATCT---GTA--T-------------A-T-T---TAAA-----GTAGATTT-T-------CCTATATCATAAA--CATGAA-AT--T-AA-AGC------C---ATCGCAATTA-TACCCTTG-T-T-A-AAAAATCA---T-G-----AATTT-TAGCACCATGGAATT
gi|1 : gtAGATTGAGGAATCAA-CAC-GATAGT--TTT-AATTTCATTATAT--CCACAATGT--TTCATTTCC-CAGCGAACTTAAA-CCCATAGTGA--ACAACAAACAAACAAAT---AC-----AATCAAACAAACAGATCCCCAAATAATACTTC--AATGC--TTTCGTAATCG---TAA--TTCTATATAAGCCGATT-TTCCTATA-----A--------T-------GTA------ATAA--TGTGAA-A---T-AA-AAA------CAAAATCGCGATTT-TGCCCTTG-T-TAC-AAAT--CA---T-G----AAATTT-TAGCACAGTAAAATTAgaagca
gi|16 : gtAGATTGGGAAATCAA-CA--CAC------TTTAATTTCATTATGT--TCACGGTTT-ATTC-TTTTT-CTGCGAAATTAAA-TCCATAGTGA--AA------------GAT---AT-----ATTCAAA------------------ACATTTC--AATAT--aag
gi|10 : AGATTGGGAATTTAG-CAT-GATGGT--TTT--ATTTCACTGTG----AAGAATTT-ACTT-TTTTC-T-GCAAAATTAAA-CCCATAGTAA--A--------------------C-----ATT---A------------------TTGTTTC--AATAC--TTTTATAATCG---AGA--TC----------------T---TAAA-----AGCAGATTTT-------CAT------TTAA--CGTGTA-GC--T-AA-AGC------C---ATCGTCATTA-TGTCCTTG-A-T----AGA--CAT--T-GTT-AAAA
gi|18 : tGATTACGAAATTGA-CAC-GATGGT--TTT-AATTTCACTATATGCTCACGATTT-ATCC-TTTTC-CAGCGACAT
gi|3 : tactgtgGACTGGGAAATTAACCC--AATGGT--TCTT-ATTTCAGTATGT--TTACAATTT-ATAA-TTTTT-CCACAAAATTAAT-CCCACGGTGA--TT------------AATTAGAT-----ATCAGAA------------------ACAATTC--AA-AT--TTAA--AAGTA---G------------------ATT-T---------------------T-------CCT------ATAA--TGTGAA-GT--T-AA-AAC------C---ATC---ATTA-ggtgaataat
gi|4 : gtacatgaagacactgttATAAA-CAC-GATGGT--TTC-AATTTCACCATGT--TCACGATTTTAATC-TTTTT-CCGTGAAAGTTCA-C--ACAGTGA--A------------------------------AAAT-----------------ATATTTC--AACGG--TTTCATAATAA---GAAAGTA------------ATAAC---TAGA-----T--------TTC-----CCT------TTA----GTG-------T-AA-AAACAAAACC---ATCGTGACTG-TGCCCTTG-T------AAA--CAAATC-G-TGAAAA-----AGCGCCGTGGCATCActtggagtacaaatgatatctaaatttgagacatccctgactgt
gi|7 : tattgtacattgagatacatgt--AATGGT--TTT--ATTTCACCATAT--TTACGATCA-ATGC-TTTTC-TTGAAAAATTAAAACCCATAATGA--AT------------GAT---AC-----CTCAAAA------------------ATATCTC--AATAC--TTCCATTATCA---GA-----------------ATT-T---CAAAGAGAGA--------T-------TTTCA----TAAA--TGTGAA-A---T-TA-AAC------C---GTCATGTTTT-TGTCCTTA-T-T-A-AAAA--AAT--T-G-T-AAAA--T-TAGCACCGTAGAATa
gi|9 : cATGGT--TT--AATATCACTATGT--TCATCATCT-ATAA-TTTTT-CTGCGAAATTAAA-CCCATAGTGAATAT------------GGT---ACACAGTATTGGAC------------------TTATTTC--AATG----------ATCATAGGAA--TC-------------TT-A---TAAA-----A--------T------------------------TGAT-G-----AA-AAC------C---ATCAAAATTG-TGCCCTTGAA-A-T-AGAT--CA---T-G----AGATTT-TAGTTTCATGGAATT
gi|8 : aacactTGGT--TTTAATTTTTACCATGT--TTACGATTT------TTTCC-CCGCGAAATTAAG-CCCATAATGA--AT------------GAC---AC-----ATTTAAA------------------ATATTTC--AATGG--TCTCATAATCG---G-----T------------ATT-T---TAAA-----AGTAGATTTT-------CCT------TTAA--CGTGAA-A---T-AATAAC------C---ATCACGATTA-TGTCCTTA-T-T-A-AAAA--AT---T-G-T-AAAATTT-TAGCATCGTGAAATTgaaac
gi|13 : TTTA-TTTCCAC-TGT--TCACGATAT-ATCA-TTTTT-CAGCGAAATTAAA-CCCATAG----------------------------------TCAAA------------------TTATTTC--AATGC--TTTA-TGATCG---GAT--TT------------TTT-T---TA----------------------------------TAA--CGTGAA-GTT-T-AA-AAC------C---ATCGCGAATG-TGCCCTTG-
gi|11 : gtagattggaaaATGT--TCACGATTC-ATTC-TTTTTTCCGCGAAATTAAA-CCCATAGTGA--AA------------AAT---AC-----ATTTAGA------------------ATATTTC--AATGC--TTTCGTAAT-A---AAA----------------ATT-T---CA--------------------------T------TCAA--CATGAATT---T-AA-AAA------T---ATCTTGATTA-TGT-ATTG-T-T-A-AAGA--AA---TCG-T-TAACGTT-TAGCAC
gi|17 : TGT--TTGCGATTT-ATTC-ATTCC-CTGCGAAATCAAA-CTGATATTGA--AT------------AAT---AC-----A-CTGAA------------------ATA-TTCTAAACGG--TTTCATAATC----GGA--T--------------TT-T---CAAA-----A--------tgcgaa
gi|14 : ttaatcgAT---AC-----ATTAAGA------------------ATGCTTC--AATGC--TTTCATAAATG---GAA--T---------------T-T---TAAA-----AGTAGATTTT-------CTT------TTAA--CATGAA-A---TTAA-AAC------C---ATCGTGATCA-TGTCCTCG-A-T-C-AAAA--AT---T-G-T-GAAACTTATAGAACAGTGGGA
gi|15 : TGC--TTTCATGATCA---AAA--T--------------TT-T---TAAA-----G--------TATATTTTCTT------TTAAAACATGAG-AATAT-AA-AAC------C---ATTTTGATTGCTACCCTAG-TAT-T-AAAT--AA---T-G----AAATTT-TAGCA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTTATTTTTAGTGAACTAGATTCATGATTTATCATTTTCGGCGAAATACTATATTAGAAATATTTCAACGCATTAGTAGTTTGAAGTTTTAATAATGGAATTTTTAAAAATTAAATCCATTGCTATTGTGCCCTGGTAACAAATTGTGAAAA
Unaligned ( gi|19 ): CCCTATAAAGAACATTAGAGAAATATGGTGAAAATTTAGTACAGTGGAATTATAACTACTTAC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222 1111111 7777777777777777777777777777777777777777 222222 222222222222
lowQualScore : 999999 3 0 2 33 2 5 0 2 55 2 22 55555555555555555555555555555555555555555555555555555 2 33 3 9999999 33 2 2222222222222222222222222222222222222222 2 222222 2 444 2 0 55555 3 111111111111 3 3
lowQualScore : ...... . . . .. . . . . .. . .. ..................................................... . .. . ....... .. . ........................................ . ...... . ... . . ..... . ............ . .
lowQualScore : 333333 3 5 9 99 5 0 1 5 99 5 88 44444444444444444444444444444444444444444444444444444 5 44 1 2222222 44 5 0000000000000000000000000000000000000000 7 555555 7 777 7 4 55555 1 888888888888 5 6
consensus : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGA--AT------------GAT---AC-----ATTNAA------------------AATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--TTAA-A-----A-----T--T----CCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCTTG-T-TAA-AAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
Reference ( family-3199 ) : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGA--AT------------GAT---AC-----ATTNAA------------------AATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--TTAA-A-----A--------T----CCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCTTG-T-TNA-AAA--CA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
gi|1 : AGATTGAGGAATCAACACG----ATAG-TTTTAATTTC-AT--TATATCCA-CAA-TGT-TTCATTTC-CCAGCGAAC-TT-AAACCCATAGTGA--ACAACAAACAAACAAAT---AC-----AATCAAACAAACAGATCCCCAAATAATACT-TCAATGC--TTTCGTAATCGTAA--T-TCT--ATAT-A-----AGCCGATTTT----CCTA-----TAATGTAAT---AATGT-GAA---A--TAA-AAACAAAATCGCGATTT-TGCCCTTG-T-TAC-AAAT-CA-T-G----AAATTT-TAGCACAGTAAAATTA
gi|10 : gtAGATTGGGAATTTAGCATG----ATGG-TTTTA-TTTC-AC--TGTG---A-AGAATTTACTTTTTTC-T--GCAAAA-TT-AAACCCATAGTAA----------------------AC-----ATT---------------------ATTGTT-TCAATAC--TTTTATAATCG--A--G-ATC--TTAA-A-----AGCAGATTTT----CAT------T-------T---AACGT-GTA---GC-TAA-AGCC---ATCGTCATTA-TGTCCTTG-A-T---AGA--CATT-GTT-AAAAaag
gi|11 : tATGTTCA-CGA-TTCATTCTTTTTTCC-GCGAAA-TT-AAACCCATAGTGA--AA------------AAT---AC-----ATTTAG------------------AATATT-TCAATGC--TTTCGTAAT--AAA--A-ATT--TCA------------------------T------T-------C---AACAT-GAAT--T--TAA-AAAT---ATCTTGATTA-TG-TATTG-T-TAA-AGA--AA-TCG-T-TAACGTT-TAGCACTGCGAA
gi|12 : -AC--TAGATTCA-TGA-TTTATCATTTTC-G--GCGAAA-T----AC---------------------------T---AT-----ATTAGA------------------AATATT-TCAACGC--ATTAGTAGTTTGAA----GTT--TTAATA-----A--------TGGAATTT------T-------T---AA----AAA---T--TAA-ATCC---ATTGCTATTG-TGCCCTGG-T-AAC-AAA--T--T-G-T-GAAA
gi|13 : tttatttttagtgaTTTATTTCC-AC--T--GTTCA-CGA-TATATCATTTTT-CA-GCGAAA-TT-AAACCCATAG----------------------------------TCAA------------------ATTATT-TCAATGC--TTT-ATGATCGG------ATT--TT------------------T----TTT------A-------T---AACGT-GAA---GTTTAA-AACC---ATCGCGAATG-TGCCCTTG-a
gi|14 : gtagattggaaaAT---AC-----ATTAAG------------------AATGCT-TCAATGC--TTTCATAAATGGA-----ATT--TTAA-A-----AGTAGATTTT----CTT------T-------T---AACAT-GAA---AT-TAA-AACC---ATCGTGATCA-TGTCCTCG-A-TCA-AAA--AT-T-G-T-GAAACTTATAGAACAGTGGGA
gi|15 : TGC--TTTCATGATCAAAA--T--TT--TTAA-A-----GTATATT--T----TCT------T-------TTAAAACAT-GAGAATA--TAA-AACC---ATTTTGATTGCTACCCTAG-TATTA-AAT--AA-T-G----AAATTT-TAGCA
gi|16 : AGATTGGGAAATCAACACA---------CTTTAATTTC-AT--TATGTTCA-CGG-TTTATTCTTTTT-CT-GCGAAA-TT-AAATCCATAGTGA--AA------------GAT---AT-----ATTCAA------------------AACATT-TCAATaatgttgatttgaaacaattt
gi|17 : TGTTTG-CGA-TTTATTCATTCC-CT-GCGAAA-TC-AAACTGATATTGA--AT------------AAT---AC-----ACTG-A------------------AATATTCTAAACGG--TTTCATAATCGG-A--T--TT--TCAA-A-----A--------at
gi|18 : ttaatcgGATTACGAAATTGACACG----ATGG-TTTTAATTTC-ACTATATGCTCA-CGA-TTTATCCTTTTC-CA-GCGA-----------CATGGTGA--AT------------AAT---
gi|2 : tactgtgAGATTGGTAAATTAACATGGATGATGG-TTTTAATTTG-AC--T--GTTAAACGA-TTTATTCCTTTT-CC-AGGAAA-TT-AAACCCATGGTGA--AT------------ACT---ACG----ACT-----------------------TACT-TCAATGC--TTTTGTAATCTGTA--T-A-T--TTAA-A-----GTAGATTT-T----CCTATATCAT-------A---AACAT-GAA---AT-TAA-AGCC---ATCGCAATTA-TACCCTTG-T-TAA-AAAATCA-T-G-----AATTT-TAGCACCATGGAATT
gi|3 : gtGACTGGGAAATTAACCCA----ATGG-TTCTTATTTC-AG--TATGTTTA-CAA-TTTATAATTTTT-CC-ACAAAA-TT-AATCCCACGGTGA--TT------------AATTAGAT-----ATCAGA------------------AACAAT-TCAA--A--TTTAAAAGTAG-------ATT--T-------------------T----CCT------A-------T---AATGT-GAA---GT-TAA-AACC---ATC---ATTA-gaagca
gi|4 : gtacatgaagacactgttATAAACACG----ATGG-TTTCAATTTC-AC--CATGTTCA-CGATTTTAATCTTTTT-CC-GTGAAAGTT----CACACAGTGA--A-----------------------------AAA------------------TATATT-TCAACGG--TTTCATAATAAGAAAGT-AATAACTAG-A-----T--------TTC--CCT------T-------T---AGTGTAAAA---A--CAA-AACC---ATCGTGACTG-TGCCCTTG-T-AAACAAAT-CG-T-G---AAAA-----AGCGCCGTGGCATCActtggagtacaaatgatatctaaatttgagacatccctgactgt
gi|5 : tattgtacattgagatacatgtAGATTGGGAAATTAACA-A----ATGGTTTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGA--AT------------GAT---AC-----ATTTAA------------------AATACT-TCAATGT--TTTCTTAATCAGAA--TCATT--TTAA-A-----A--------T----CCT------T-------T---AACGT-GAA---G--TAA-AAAC---ATCGCGATTA-TGTCCTTG-T-TTA-AAA--CA-T-G-T-AAAATTT-TAGCACCATGGAATTAa
gi|6 : AGATTGGGAAATTAACA-A----ATGG-TTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGA--AT------------GAT---AC-----ATTTAA------------------AATACT-TCAATGTTGTTTCTTAATCAGAA--TCATT--TTAA-A-----A--------T----GCT------T-------T---AACGT-GAA---G--TAA-AAAC---ATCGCGATTA-TGTCCTTGTT-TAA-AAA--CA-T-G-TAAAAATTT-TAGCACCATGGAtt
gi|7 : CA----ATGG-TTTTA-TTTC-AC--CATATTTA-CGA-TCAATGCTTTTC-TT-GAAAAA-TTAAAACCCATAATGA--AT------------GAT---AC-----CTCAAA------------------AATATC-TCAATAC--TTCCATTATCAGA-----ATT--TCAA-AGAGAGA--------T----TTTCA----T-------A---AATGT-GAA---A--TTA-AACC---GTCATGTTTT-TGTCCTTA-T-TAA-AAA--AATT-G-T-AAAA--T-TAGCACCGTAGAAT
gi|8 : TGG-TTTTAATTTTTAC--CATGTTTA-CGA-TTT----TTTCC-CC-GCGAAA-TT-AAGCCCATAATGA--AT------------GAC---AC-----ATTTAA------------------AATATT-TCAATGG--TCTCATAATCGG----T-ATT--TTAA-A-----AGTAGATTTT----CCT------T-------T---AACGT-GAA---A--TAATAACC---ATCACGATTA-TGTCCTTA-T-TAA-AAA--AT-T-G-T-AAAATTT-TAGCATCGTGAAATT
gi|9 : AACACT----ATGG-TTT-AATATC-AC--TATGTTCA-TCA-TCTATAATTTTT-CT-GCGAAA-TT-AAACCCATAGTGAATAT------------GGT---ACACAGTATTGGA------------------CTTATT-TCAATGA----TCATA---GGAA--T-CTT--ATAA-A-----A--------T-----------------------------T-GAT---G---AA-AACC---ATCAAAATTG-TGCCCTTG----AA-ATA--GA-TCA-T-GAGATTT-TAGTTTCATGGAATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CCCTATAAAGAACATTAGAGAAATATGGTGAAAATTTAGTACAGTGGAATTATAACTACTTAC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222 66666666666666666666666666666666666666666666666666666666 11111 222222222222
lowQualScore : 999999 3 0 2 33 2 5 0 2 55 2 22 55555555555555555555555555555555555555555555555555555 2 33 3 1 11111111111111111111111111111111111111111111111111111111 33 2 99999 2 2 444 2 0 33 88 111111111111 3 3
lowQualScore : ...... . . . .. . . . . .. . .. ..................................................... . .. . . ........................................................ .. . ..... . . ... . . .. .. ............ . .
lowQualScore : 333333 3 5 9 99 5 0 1 5 99 5 88 44444444444444444444444444444444444444444444444444444 5 44 7 2 33333333333333333333333333333333333333333333333333333333 77 7 88888 7 7 777 7 4 99 11 999999999999 5 6
consensus : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGA--AT------------GAT---AC-----ATTNAA------------------AATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--TTAA------AA-----T-T------T-CCT------T-------TAA--CGT-GAA-G---T-AA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
Reference ( family-3199 ) : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGA--AT------------GAT---AC-----ATTNAA------------------AATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--TTAA------AA-------T------T-CCT------T-------TAA--CGT-GAA-G---T-AA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
gi|1 : AGATTGAGGAATCAACACG----ATAG-TTTTAATTTC-AT--TATATCCA-CAA-TGT-TTCATTTC-CCAGCGAAC-TT-AAACCCATAGTGA--ACAACAAACAAACAAAT---AC-----AATCAAACAAACAGATCCCCAAATAATACT-TCAATGC--TTTCGTAATCGTAA--T-TCT--ATAT------AAGCCGATTT------T-CCTA-----TAATGTAATAA--TGT-GAA-A---T-AA-AAACAAAATCGCGATTT-TGCCCT--TG-TTACAAAT-CA-T-G----AAATTT-TAGCACAGTAAAATTA
gi|10 : gtAGATTGGGAATTTAGCATG----ATGG-TTTTA-TTTC-AC--TGTG---A-AGAATTTACTTTTTTC-T--GCAAAA-TT-AAACCCATAGTAA----------------------AC-----ATT---------------------ATTGTT-TCAATAC--TTTTATAATCG--A--G-ATC--TTAA------AAGCAGATTT------T-CAT------T-------TAA--CGT-GTA-GC--T-AA-AGCC---ATCGTCATTA-TGTCCT--TG-ATAGACA--T--T-GTT-AAAAaag
gi|11 : tATGTTCA-CGA-TTCATTCTTTTTTCC-GCGAAA-TT-AAACCCATAGTGA--AA------------AAT---AC-----ATTTAG------------------AATATT-TCAATGC--TTTCGTAAT---AA-----------AA------AT-------T------T-CAT------T-------CAA--CAT-GAATT---T-AA-AAAT---ATCTTGATTA-TG-TAT--TG-TTAAAGA--AA-TCG-T-TAACGTT-TAGCACTGCGAA
gi|12 : -AC--TAGATTCA-TGA-TTTATCATTTTC-G--GCGAAA-T----AC---------------------------T---AT-----ATTAGA------------------AATATT-TCAACGC--ATTAGTAGTTTGAA----GTT--TTAATAATGGAA-------T------T---T------T-------TAA------AAA-T---T-AA-ATCC---ATTGCTATTG-TGCCC---TG-GTAACAA--AT-T-G-T-GAAA
gi|13 : tttatttttagtgaTTTATTTCC-AC--T--GTTCA-CGA-TATATCATTTTT-CA-GCGAAA-TT-AAACCCATAG----------------------------------TCAA------------------ATTATT-TCAATGC--TTT-ATGATCGG------ATT--T------------------T------T-TTT------A-------TAA--CGT-GAA-GTT-T-AA-AACC---ATCGCGAATG-TGCCCT--TG-a
gi|14 : gtagattggaaaAT---AC-----ATTAAG------------------AATGCT-TCAATGC--TTTCATAAATGGAA--T---T--TTAA------AAGTAGATTT------T-CTT------T-------TAA--CAT-GAA-A---TTAA-AACC---ATCGTGATCA-TGTCCT--CGATCAAAAA--T--T-G-T-GAAACTTATAGAACAGTGGGA
gi|15 : TGC--TTTCATGATCAAAA--T--TT--TTAA------AG-------TATATTTT-CTT------T-------TAAAACAT-GAG-AATAT-AA-AACC---ATTTTGATTGCTACCCTAGTA-TTAAATA---A-T-G----AAATTT-TAGCA
gi|16 : AGATTGGGAAATCAACACA---------CTTTAATTTC-AT--TATGTTCA-CGG-TTTATTCTTTTT-CT-GCGAAA-TT-AAATCCATAGTGA--AA------------GAT---AT-----ATTCAA------------------AACATT-TCAATaatgttgatttgaaacaattt
gi|17 : TGTTTG-CGA-TTTATTCATTCC-CT-GCGAAA-TC-AAACTGATATTGA--AT------------AAT---AC-----ACTG-A------------------AATATTCTAAACGG--TTTCATAATCGG-A--T--TT--TCAA------AA-------at
gi|18 : ttaatcgGATTACGAAATTGACACG----ATGG-TTTTAATTTC-ACTATATGCTCA-CGA-TTTATCCTTTTC-CA-GCGA-----------CATGGTGA--AT------------AAT---
gi|2 : tactgtgAGATTGGTAAATTAACATGGATGATGG-TTTTAATTTG-AC--T--GTTAAACGA-TTTATTCCTTTT-CC-AGGAAA-TT-AAACCCATGGTGA--AT------------ACT---ACG----ACT-----------------------TACT-TCAATGC--TTTTGTAATCTGTA--T-A-T--TTAA------AGTAGATT-T------T-CCTATATCAT-------AAA--CAT-GAA-AT--T-AA-AGCC---ATCGCAATTA-TACCCT--TG-TTAAAAAATCA-T-G-----AATTT-TAGCACCATGGAATT
gi|3 : gtGACTGGGAAATTAACCCA----ATGG-TTCTTATTTC-AG--TATGTTTA-CAA-TTTATAATTTTT-CC-ACAAAA-TT-AATCCCACGGTGA--TT------------AATTAGAT-----ATCAGA------------------AACAAT-TCAA--A--TT---TAA---AAG--T-AGA--TT-----------------T------T-CCT------A-------TAA--TGT-GAA-GT--T-AA-AACC---ATC---ATTA-gaagca
gi|4 : gtacatgaagacactgttATAAACACG----ATGG-TTTCAATTTC-AC--CATGTTCA-CGATTTTAATCTTTTT-CC-GTGAAAGTT----CACACAGTGA--A-----------------------------AAA------------------TATATT-TCAACGG--TTTCATAATAAGAAAGT-AATAACTAG------AT-------T------TCCCT------T-------TAG--TGTAAAA-A---C-AA-AACC---ATCGTGACTG-TGCCCT--TG--TAAACA--AA-TCG-TGAAAA-----AGCGCCGTGGCATCActtggagtacaaatgatatctaaatttgagacatccctgactgt
gi|5 : tattgtacattgagatacatgtAGATTGGGAAATTAACA-A----ATGGTTTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGA--AT------------GAT---AC-----ATTTAA------------------AATACT-TCAATGT--TTTCTTAATCAGAA--TCATT--TTAA------AA--------------T-CCT------T-------TAA--CGT-GAA-G---T-AA-AAAC---ATCGCGATTA-TGTCCT--TG-TTTAAAA--CA-T-G-T-AAAATTT-TAGCACCATGGAATTAa
gi|6 : AGATTGGGAAATTAACA-A----ATGG-TTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGA--AT------------GAT---AC-----ATTTAA------------------AATACT-TCAATGTTGTTTCTTAATCAGAA--TCATT--TTAA------AA--------------T-GCT------T-------TAA--CGT-GAA-G---T-AA-AAAC---ATCGCGATTA-TGTCCT--TGTTTAAAAA--CA-T-G-TAAAAATTT-TAGCACCATGGAtt
gi|7 : CA----ATGG-TTTTA-TTTC-AC--CATATTTA-CGA-TCAATGCTTTTC-TT-GAAAAA-TTAAAACCCATAATGA--AT------------GAT---AC-----CTCAAA------------------AATATC-TCAATAC--TTCCATTATCAGA-----ATT--TCAA------AGAGAGAT-T------T-TCA------T-------AAA--TGT-GAA-A---T-TA-AACC---GTCATGTTTT-TGTCCT--TA-TTAAAAA--AATT-G-T-AAAA--T-TAGCACCGTAGAAT
gi|8 : TGG-TTTTAATTTTTAC--CATGTTTA-CGA-TTT----TTTCC-CC-GCGAAA-TT-AAGCCCATAATGA--AT------------GAC---AC-----ATTTAA------------------AATATT-TCAATGG--TCTCATAATCGG----T-ATT--TTAA------AAGTAGATTT------T-CCT------T-------TAA--CGT-GAA-A---T-AATAACC---ATCACGATTA-TGTCCT--TA-TTAAAAA--AT-T-G-T-AAAATTT-TAGCATCGTGAAATT
gi|9 : AACACT----ATGG-TTT-AATATC-AC--TATGTTCA-TCA-TCTATAATTTTT-CT-GCGAAA-TT-AAACCCATAGTGAATAT------------GGT---ACACAGTATTGGA------------------CTTATT-TCAATGA----TCATA---GGAA--T-CTT--ATAA------AA-------T--------------------------------T-GAT-G-----AA-AACC---ATCAAAATTG-TGCCCT--TG---AAATA--GA-TCA-T-GAGATTT-TAGTTTCATGGAATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CCCTATAAAGAACATTAGAGAAATATGGTGAAAATTTAGTACAGTGGAATTATAACTACTTAC
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222 4444444444444444444444444444444444444444444444444444444444444444 222222 222222222222
lowQualScore : 999999 3 0 2 33 2 5 0 2 55 2 22 111111111111111111111111111111111111111111111111111111 2 33 3 6666666666666666666666666666666666666666666666666666666666666666 2 222222 2 444 2 0 33 88 111111111111 3 3
lowQualScore : ...... . . . .. . . . . .. . .. ...................................................... . .. . ................................................................ . ...... . ... . . .. .. ............ . .
lowQualScore : 333333 3 5 9 99 5 0 1 5 99 5 88 666666666666666666666666666666666666666666666666666666 5 44 7 3333333333333333333333333333333333333333333333333333333333333333 7 555555 7 777 7 4 99 11 999999999999 5 6
consensus : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
Reference ( family-3199 ) : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
gi|1 : AGATTGAGGAATCAACACG----ATAG-TTTTAATTTC-AT--TATATCCA-CAA-TGT-TTCATTTC-CCAGCGAAC-TT-AAACCCATAGTGAAC--AACAAACAAACAAAT---AC-A-----ATCAAACAAACAGATCCCCAAATAATACT-TCAATGC--TTTCGTAATCGTAA--T-TCT--A----TAT------A-----AGCCGATTTTCCTA-----TAATGTAAT---AATGT-GAA---A--TAA-AAACAAAATCGCGATTT-TGCCCT--TG-TTACAAAT-CA-T-G----AAATTT-TAGCACAGTAAAATTA
gi|10 : gtAGATTGGGAATTTAGCATG----ATGG-TTTTA-TTTC-AC--TGTG---A-AGAATTTACTTTTTTC-T--GCAAAA-TT-AAACCCATAGTAA----------------------AC-A-----TT---A------------------TTGTT-TCAATAC--TTTTATAATCG--A--G-ATC--T----TAA------A-----AGCAGATTTTCAT------T-------T---AACGT-GTA---GC-TAA-AGCC---ATCGTCATTA-TGTCCT--TG-ATAGACA--T--T-GTT-AAAAaag
gi|11 : tATGTTCA-CGA-TTCATTCTTTTTTCC-GCGAAA-TT-AAACCCATAGTGAAA--AA------------T---AC-A-----TTTAGA------------------ATATT-TCAATGC--TTTCGTAAT---A----------------AA------A-----A------TTTCAT------T-------C---AACAT-GAAT--T--TAA-AAAT---ATCTTGATTA-TG-TAT--TG-TTAAAGA--AA-TCG-T-TAACGTT-TAGCACTGCGAA
gi|12 : -AC--TAGATTCA-TGA-TTTATCATTTTC-G--GCGAAA-T----AC---------------------------T---AT-A-----TTAGAA------------------ATATT-TCAACGC--ATTAGTAGTTTGAA----GTT--T----TAATAATGGA-----A------TT---T------T-------T---AA----AAA---T--TAA-ATCC---ATTGCTATTG-TGCCC---TG-GTAACAA--AT-T-G-T-GAAA
gi|13 : tttatttttagtgaTTTATTTCC-AC--T--GTTCA-CGA-TATATCATTTTT-CA-GCGAAA-TT-AAACCCATAG-----------------------------------TCAAA------------------TTATT-TCAATGC--TTT-ATGATCGG------ATT--T----T---------------------TTT--T------A-------T---AACGT-GAA---GTTTAA-AACC---ATCGCGAATG-TGCCCT--TG-a
gi|14 : gtagattggaaaA------------T---AC-A-----TTAAGA------------------ATGCT-TCAATGC--TTTCATAAATGGA-----ATT--T----TAA------A-----AGTAGATTTTCTT------T-------T---AACAT-GAA---AT-TAA-AACC---ATCGTGATCA-TGTCCT--CGATCAAAAA--T--T-G-T-GAAACTTATAGAACAGTGGGA
gi|15 : TGC--TTTCATGATCAAAA--T--TT--T----TAA------AGTAT-A------TTTTCT------T-------TTAAAACAT-GAGAATA--TAA-AACC---ATTTTGATTGCTACCCTAGTA-TTAAATA---A-T-G----AAATTT-TAGCA
gi|16 : AGATTGGGAAATCAACACA---------CTTTAATTTC-AT--TATGTTCA-CGG-TTTATTCTTTTT-CT-GCGAAA-TT-AAATCCATAGTGAAA--GA------------T---AT-A-----TTCAAA------------------ACATT-TCAATaatgttgatttgaaacaattt
gi|17 : TGTTTG-CGA-TTTATTCATTCC-CT-GCGAAA-TC-AAACTGATATTGAAT--AA------------T---AC-A-----CTG-AA------------------ATATTCTAAACGG--TTTCATAATCGG-A--T--TT--T----CAA------A-----A------at
gi|18 : ttaatcgGATTACGAAATTGACACG----ATGG-TTTTAATTTC-ACTATATGCTCA-CGA-TTTATCCTTTTC-CA-GCGA-----------CATGGTGAAT--AA------------T---
gi|2 : tactgtgAGATTGGTAAATTAACATGGATGATGG-TTTTAATTTG-AC--T--GTTAAACGA-TTTATTCCTTTT-CC-AGGAAA-TT-AAACCCATGGTGAAT--AC------------T---ACGA-----CT-----------------------TACT-TCAATGC--TTTTGTAATCTGTA--T-ATT--TAAAGTAG------A-----T------TTTCCTATATCAT-------A---AACAT-GAA---AT-TAA-AGCC---ATCGCAATTA-TACCCT--TG-TTAAAAAATCA-T-G-----AATTT-TAGCACCATGGAATT
gi|3 : gtGACTGGGAAATTAACCCA----ATGG-TTCTTATTTC-AG--TATGTTTA-CAA-TTTATAATTTTT-CC-ACAAAA-TT-AATCCCACGGTGATT--AA------------TTAGAT-A-----TCAGAA------------------ACAAT-TCAA--A--TT---TAA----AA---------G----TAG------A-----T------TTTCCT------A-------T---AATGT-GAA---GT-TAA-AACC---ATC---ATTA-gaagca
gi|4 : gtacatgaagacactgttATAAACACG----ATGG-TTTCAATTTC-AC--CATGTTCA-CGATTTTAATCTTTTT-CC-GTGAAAGTT----CACACAGTGAA--------------------------------AAAT------------------ATATT-TCAACGG--TTTCATAATAAGAAAGT-AATAAC----TAG------A-----T------TTCCCT------T-------T---AGTGTAAAA---A--CAA-AACC---ATCGTGACTG-TGCCCT--TG--TAAACA--AA-TCG-TGAAAA-----AGCGCCGTGGCATCActtggagtacaaatgatatctaaatttgagacatccctgactgt
gi|5 : tattgtacattgagatacatgtAGATTGGGAAATTAACA-A----ATGGTTTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGAAT--GA------------T---AC-A-----TTTAAA------------------ATACT-TCAATGT--TTTCTTAATCAGAA--TCATT--T----TAA------A-----A--------TCCT------T-------T---AACGT-GAA---G--TAA-AAAC---ATCGCGATTA-TGTCCT--TG-TTTAAAA--CA-T-G-T-AAAATTT-TAGCACCATGGAATTAa
gi|6 : AGATTGGGAAATTAACA-A----ATGG-TTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGAAT--GA------------T---AC-A-----TTTAAA------------------ATACT-TCAATGTTGTTTCTTAATCAGAA--TCATT--T----TAA------A-----A--------TGCT------T-------T---AACGT-GAA---G--TAA-AAAC---ATCGCGATTA-TGTCCT--TGTTTAAAAA--CA-T-G-TAAAAATTT-TAGCACCATGGAtt
gi|7 : CA----ATGG-TTTTA-TTTC-AC--CATATTTA-CGA-TCAATGCTTTTC-TT-GAAAAA-TTAAAACCCATAATGAAT--GA------------T---AC-C-----TCAAAA------------------ATATC-TCAATAC--TTCCATTATCAGA-----ATT--T----CAA------AGAGAGA------TTTTCA------T-------A---AATGT-GAA---A--TTA-AACC---GTCATGTTTT-TGTCCT--TA-TTAAAAA--AATT-G-T-AAAA--T-TAGCACCGTAGAAT
gi|8 : TGG-TTTTAATTTTTAC--CATGTTTA-CGA-TTT----TTTCC-CC-GCGAAA-TT-AAGCCCATAATGAAT--GA------------C---AC-A-----TTTAAA------------------ATATT-TCAATGG--TCTCATAATCGG----T-ATT--T----TAA------A-----AGTAGATTTTCCT------T-------T---AACGT-GAA---A--TAATAACC---ATCACGATTA-TGTCCT--TA-TTAAAAA--AT-T-G-T-AAAATTT-TAGCATCGTGAAATT
gi|9 : AACACT----ATGG-TTT-AATATC-AC--TATGTTCA-TCA-TCTATAATTTTT-CT-GCGAAA-TT-AAACCCATAGTGAATATGG------------T---AC-ACAGTATTGGAC------------------TTATT-TCAATGA--T--CATA---GGAA--T-CTT--A----TAA------A-----A------TT----------------------------GAT---G---AA-AACC---ATCAAAATTG-TGCCCT--TG---AAATA--GA-TCA-T-GAGATTT-TAGTTTCATGGAATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CCCTATAAAGAACATTAGAGAAATATGGTGAAAATTTAGTACAGTGGAATTATAACTACTTAC
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222 4444444444444444444444444444444444444444444444444444444444444444 222222 222222222222
lowQualScore : 999999 3 0 2 33 2 5 0 2 55 2 22 111111111111111111111111111111111111111111111111111111 2 33 3 6666666666666666666666666666666666666666666666666666666666666666 2 222222 2 444 2 0 33 88 111111111111 3 3
lowQualScore : ...... . . . .. . . . . .. . .. ...................................................... . .. . ................................................................ . ...... . ... . . .. .. ............ . .
lowQualScore : 333333 3 5 9 99 5 0 1 5 99 5 88 666666666666666666666666666666666666666666666666666666 5 44 7 3333333333333333333333333333333333333333333333333333333333333333 7 555555 7 777 7 4 99 11 999999999999 5 6
consensus : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
Reference ( family-3199 ) : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
gi|1 : AGATTGAGGAATCAACACG----ATAG-TTTTAATTTC-AT--TATATCCA-CAA-TGT-TTCATTTC-CCAGCGAAC-TT-AAACCCATAGTGAAC--AACAAACAAACAAAT---AC-A-----ATCAAACAAACAGATCCCCAAATAATACT-TCAATGC--TTTCGTAATCGTAA--T-TCT--A----TAT------A-----AGCCGATTTTCCTA-----TAATGTAAT---AATGT-GAA---A--TAA-AAACAAAATCGCGATTT-TGCCCT--TG-TTACAAAT-CA-T-G----AAATTT-TAGCACAGTAAAATTA
gi|10 : gtAGATTGGGAATTTAGCATG----ATGG-TTTTA-TTTC-AC--TGTG---A-AGAATTTACTTTTTTC-T--GCAAAA-TT-AAACCCATAGTAA----------------------AC-A-----TT---A------------------TTGTT-TCAATAC--TTTTATAATCG--A--G-ATC--T----TAA------A-----AGCAGATTTTCAT------T-------T---AACGT-GTA---GC-TAA-AGCC---ATCGTCATTA-TGTCCT--TG-ATAGACA--T--T-GTT-AAAAaag
gi|11 : tATGTTCA-CGA-TTCATTCTTTTTTCC-GCGAAA-TT-AAACCCATAGTGAAA--AA------------T---AC-A-----TTTAGA------------------ATATT-TCAATGC--TTTCGTAAT---A----------------AA------A-----A------TTTCAT------T-------C---AACAT-GAAT--T--TAA-AAAT---ATCTTGATTA-TG-TAT--TG-TTAAAGA--AA-TCG-T-TAACGTT-TAGCACTGCGAA
gi|12 : -AC--TAGATTCA-TGA-TTTATCATTTTC-G--GCGAAA-T----AC---------------------------T---AT-A-----TTAGAA------------------ATATT-TCAACGC--ATTAGTAGTTTGAA----GTT--T----TAATAATGGA-----A------TT---T------T-------T---AA----AAA---T--TAA-ATCC---ATTGCTATTG-TGCCC---TG-GTAACAA--AT-T-G-T-GAAA
gi|13 : tttatttttagtgaTTTATTTCC-AC--T--GTTCA-CGA-TATATCATTTTT-CA-GCGAAA-TT-AAACCCATAG-----------------------------------TCAAA------------------TTATT-TCAATGC--TTT-ATGATCGG------ATT--T----T---------------------TTT--T------A-------T---AACGT-GAA---GTTTAA-AACC---ATCGCGAATG-TGCCCT--TG-a
gi|14 : gtagattggaaaA------------T---AC-A-----TTAAGA------------------ATGCT-TCAATGC--TTTCATAAATGGA-----ATT--T----TAA------A-----AGTAGATTTTCTT------T-------T---AACAT-GAA---AT-TAA-AACC---ATCGTGATCA-TGTCCT--CGATCAAAAA--T--T-G-T-GAAACTTATAGAACAGTGGGA
gi|15 : TGC--TTTCATGATCAAAA--T--TT--T----TAA------AGTAT-A------TTTTCT------T-------TTAAAACAT-GAGAATA--TAA-AACC---ATTTTGATTGCTACCCTAGTA-TTAAATA---A-T-G----AAATTT-TAGCA
gi|16 : AGATTGGGAAATCAACACA---------CTTTAATTTC-AT--TATGTTCA-CGG-TTTATTCTTTTT-CT-GCGAAA-TT-AAATCCATAGTGAAA--GA------------T---AT-A-----TTCAAA------------------ACATT-TCAATaatgttgatttgaaacaattt
gi|17 : TGTTTG-CGA-TTTATTCATTCC-CT-GCGAAA-TC-AAACTGATATTGAAT--AA------------T---AC-A-----CTG-AA------------------ATATTCTAAACGG--TTTCATAATCGG-A--T--TT--T----CAA------A-----A------at
gi|18 : ttaatcgGATTACGAAATTGACACG----ATGG-TTTTAATTTC-ACTATATGCTCA-CGA-TTTATCCTTTTC-CA-GCGA-----------CATGGTGAAT--AA------------T---
gi|2 : tactgtgAGATTGGTAAATTAACATGGATGATGG-TTTTAATTTG-AC--T--GTTAAACGA-TTTATTCCTTTT-CC-AGGAAA-TT-AAACCCATGGTGAAT--AC------------T---ACGA-----CT-----------------------TACT-TCAATGC--TTTTGTAATCTGTA--T-ATT--TAAAGTAG------A-----T------TTTCCTATATCAT-------A---AACAT-GAA---AT-TAA-AGCC---ATCGCAATTA-TACCCT--TG-TTAAAAAATCA-T-G-----AATTT-TAGCACCATGGAATT
gi|3 : gtGACTGGGAAATTAACCCA----ATGG-TTCTTATTTC-AG--TATGTTTA-CAA-TTTATAATTTTT-CC-ACAAAA-TT-AATCCCACGGTGATT--AA------------TTAGAT-A-----TCAGAA------------------ACAAT-TCAA--A--TT---TAA----AA---------G----TAG------A-----T------TTTCCT------A-------T---AATGT-GAA---GT-TAA-AACC---ATC---ATTA-gaagca
gi|4 : gtacatgaagacactgttATAAACACG----ATGG-TTTCAATTTC-AC--CATGTTCA-CGATTTTAATCTTTTT-CC-GTGAAAGTT----CACACAGTGAA--------------------------------AAAT------------------ATATT-TCAACGG--TTTCATAATAAGAAAGT-AATAAC----TAG------A-----T------TTCCCT------T-------T---AGTGTAAAA---A--CAA-AACC---ATCGTGACTG-TGCCCT--TG--TAAACA--AA-TCG-TGAAAA-----AGCGCCGTGGCATCActtggagtacaaatgatatctaaatttgagacatccctgactgt
gi|5 : tattgtacattgagatacatgtAGATTGGGAAATTAACA-A----ATGGTTTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGAAT--GA------------T---AC-A-----TTTAAA------------------ATACT-TCAATGT--TTTCTTAATCAGAA--TCATT--T----TAA------A-----A--------TCCT------T-------T---AACGT-GAA---G--TAA-AAAC---ATCGCGATTA-TGTCCT--TG-TTTAAAA--CA-T-G-T-AAAATTT-TAGCACCATGGAATTAa
gi|6 : AGATTGGGAAATTAACA-A----ATGG-TTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TT-TAACCTGTAGTGAAT--GA------------T---AC-A-----TTTAAA------------------ATACT-TCAATGTTGTTTCTTAATCAGAA--TCATT--T----TAA------A-----A--------TGCT------T-------T---AACGT-GAA---G--TAA-AAAC---ATCGCGATTA-TGTCCT--TGTTTAAAAA--CA-T-G-TAAAAATTT-TAGCACCATGGAtt
gi|7 : CA----ATGG-TTTTA-TTTC-AC--CATATTTA-CGA-TCAATGCTTTTC-TT-GAAAAA-TTAAAACCCATAATGAAT--GA------------T---AC-C-----TCAAAA------------------ATATC-TCAATAC--TTCCATTATCAGA-----ATT--T----CAA------AGAGAGA------TTTTCA------T-------A---AATGT-GAA---A--TTA-AACC---GTCATGTTTT-TGTCCT--TA-TTAAAAA--AATT-G-T-AAAA--T-TAGCACCGTAGAAT
gi|8 : TGG-TTTTAATTTTTAC--CATGTTTA-CGA-TTT----TTTCC-CC-GCGAAA-TT-AAGCCCATAATGAAT--GA------------C---AC-A-----TTTAAA------------------ATATT-TCAATGG--TCTCATAATCGG----T-ATT--T----TAA------A-----AGTAGATTTTCCT------T-------T---AACGT-GAA---A--TAATAACC---ATCACGATTA-TGTCCT--TA-TTAAAAA--AT-T-G-T-AAAATTT-TAGCATCGTGAAATT
gi|9 : AACACT----ATGG-TTT-AATATC-AC--TATGTTCA-TCA-TCTATAATTTTT-CT-GCGAAA-TT-AAACCCATAGTGAATATGG------------T---AC-ACAGTATTGGAC------------------TTATT-TCAATGA--T--CATA---GGAA--T-CTT--A----TAA------A-----A------TT----------------------------GAT---G---AA-AACC---ATCAAAATTG-TGCCCT--TG---AAATA--GA-TCA-T-GAGATTT-TAGTTTCATGGAATT
blockSeqs : TGGATG T T TA A A T C G AA TATGGTACACAGTATTGGAC C TG A TGTATATTTAAAGTAGATTTTCCTATATCATA A AATA T . C AG AT AATCGTGA G A
blockSeqs : TG . . . . T . A . A TAATTAGATATCAGAA . . G AAAATTTTTAAAGTATATTTTCTTTTAA . GTT . . . . TT AATCGTT C .
blockSeqs : CA . . . . . . T . A AAATACATTTAGA . . G GAGATCTTAAAAGCAGATTTTCATTT . GC . . . . A CATGTAA T .
blockSeqs : CG . . . . . . T . A AGATATATTCAAA . . A GGAATTTTAAAAGTAGATTTTCTTTT . TT . . . . T AATTGTA T .
blockSeqs : CA . . . . . . A . A TGATACATTTAAA . . A AGAAAGTAATAACTAGATTTCCCTTT . AT . . . . G GATCATG T .
blockSeqs : CG . . . . . . C . A TGATACATTTAAA . . A GGTATTTTAAAAGTAGATTTTCCTTT . AT . . . . T TTGTTA T .
blockSeqs : CA . . . . . . C . A TGATACCTCAAAA . . A AGAATTTCAAAGAGAGATTTTCATA . GT . . . . T ATTGTG T .
blockSeqs : CT . . . . . . C . A TGACACATTTAAA . . G TGAAGTTTTAATAATGGAATTTTT . T . . . . T ATCATG T .
blockSeqs : A . . . . . . C . T TAATACACTGAA . . A AGAATCATTTTAAAATCCTTT . A . . . . T CATGTA . .
blockSeqs : A . . . . . . C . T TATATTAGAA . . T AGAATCATTTTAAAATGCTTT . G . . . . T ATTGTA . .
blockSeqs : . . . . . . T . A TACTACGACT . . T AAGTAGATTTTCCTAT . G . . . . . TTGTG
blockSeqs : . . . . . C . A ACATTA . . A GGAATCTTATAAAATT . A . . . . . ATG
blockSeqs : . . . . . T . . TCAAA . . A AAAAATTTCATTC . A . . . .
blockSeqs : . . . . . . AAAT . . A GGATTTTTTTTAT . G . . .
blockSeqs : . . . . . . . . .
blockSeqCons : C* *** AATCGTG*****
originalCons : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAA--NA-T-G-T-AAAATTT-TAGCACCGTGGAATTA
finalCons : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TT-AAACCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA---G--TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAAAATCGTG-----AAATTT-TAGCACCGTGGAATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CCCTATAAAGAACATTAGAGAAATATGGTGAAAATTTAGTACAGTGGAATTATAACTACTTAC
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222 4444444444444444444444444444444444444444444444444444444444444444 22222 1111
lowQualScore : 999999 3 0 2 33 2 5 0 2 55 2 0 2 111111111111111111111111111111111111111111111111111111 2 33 3 6666666666666666666666666666666666666666666666666666666666666666 2 22222 2 444 2 0 33 1111 2 5 3 3 3
lowQualScore : ...... . . . .. . . . . .. . . . ...................................................... . .. . ................................................................ . ..... . ... . . .. .... . . . . .
lowQualScore : 333333 3 5 9 99 5 0 1 5 99 5 3 5 666666666666666666666666666666666666666666666666666666 5 44 7 3333333333333333333333333333333333333333333333333333333333333333 7 55555 7 777 7 4 99 9999 6 8 3 5 6
consensus : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TTAAA-CCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA-G---TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAANAAATCGT-GAAATTT-TAGCACCGTGGAATTA
Reference ( family-3199 ) : AGATTGGGAAATTAACACG----ATGG-TTTTAATTTC-AC--TATGTTCA-CGA-TTTATTCTTTTC-CC-GCGAAA-TTAAA-CCCATAGTGAAT--GA------------T---AC-A-----TTNAAA------------------ATATT-TCAATGC--TTTCGTAATCGGAA--T-ATT--T----TAA------A-----A------TTTCCT------T-------T---AACGT-GAA-G---TAA-AACC---ATCGCGATTA-TGCCCT--TG-TTAAAAAAATCGT-GAAATTT-TAGCACCGTGGAATTA
gi|1 : AGATTGAGGAATCAACACG----ATAG-TTTTAATTTC-AT--TATATCCA-CAA-TGT-TTCATTTC-CCAGCGAAC-TTAAA-CCCATAGTGAAC--AACAAACAAACAAAT---AC-A-----ATCAAACAAACAGATCCCCAAATAATACT-TCAATGC--TTTCGTAATCGTAA--T-TCT--A----TAT------A-----AGCCGATTTTCCTA-----TAATGTAAT---AATGT-GAA-A---TAA-AAACAAAATCGCGATTT-TGCCCT--TG-TT--ACAAATCAT-GAAATTT-TAGCACAGTAAAATTA
gi|10 : gtAGATTGGGAATTTAGCATG----ATGG-TTTTA-TTTC-AC--TGTG---A-AGAATTTACTTTTTTC-T--GCAAAA-TTAAA-CCCATAGTAA----------------------AC-A-----TT---A------------------TTGTT-TCAATAC--TTTTATAATCG--A--G-ATC--T----TAA------A-----AGCAGATTTTCAT------T-------T---AACGT-GTA-GC--TAA-AGCC---ATCGTCATTA-TGTCCT--TG-ATAGAaag
gi|11 : tATGTTCA-CGA-TTCATTCTTTTTTCC-GCGAAA-TTAAA-CCCATAGTGAAA--AA------------T---AC-A-----TTTAGA------------------ATATT-TCAATGC--TTTCGTAAT---A----------------AA------A-----A------TTTCAT------T-------C---AACAT-GAATT---TAA-AAAT---ATCTTGATTA-TG-TAT--TG-TTAAAGAAATCGT-TAACGTT-TAGCACTGCGAAcattgttaaaa
gi|12 : -AC--TAGATTCA-TGA-TTTATCATTTTC-G--GCGAAA-T---A-C---------------------------T---AT-A-----TTAGAA------------------ATATT-TCAACGC--ATTAGTAGTTTGAA----GTT--T----TAATAATGGA-----A------TT---T------T-------T---AA----AAA-T---TAA-ATCC---ATTGCTATTG-TGCCCT--GG-T--AACAAATTGT-GAAA
gi|13 : tttatttttagtgaTTTATTTCC-AC--T--GTTCA-CGA-TATATCATTTTT-CA-GCGAAA-TTAAA-CCCATAG-----------------------------------TCAAA------------------TTATT-TCAATGC--TTT-ATGATCGG------ATT--T----T---------------------TTT--T------A-------T---AACGT-GAA-GTT-TAA-AACC---ATCGCGAATG-TGCCCT--TG-a
gi|14 : gtagattggaaaA------------T---AC-A-----TTAAGA------------------ATGCT-TCAATGC--TTTCATAAATGGA-----ATT--T----TAA------A-----AGTAGATTTTCTT------T-------T---AACAT-GAA-AT--TAA-AACC---ATCGTGATCA-TGTCCT--CG-AT-CAAAAATTGT-GAAACTTATAGAACAGTGGGA
gi|15 : TGC--TTTCATGATCAAAA--T--TT--T----TAA------AGTAT-A------TTTTCT------T-------TTAAAACAT-GAG-AATATAA-AACC---ATTTTGATTGCTACCCTAGTA-TTAAATAA----T-GAAATTT-TAGCA
gi|16 : AGATTGGGAAATCAACACA---------CTTTAATTTC-AT--TATGTTCA-CGG-TTTATTCTTTTT-CT-GCGAAA-TTAAA-TCCATAGTGAAA--GA------------T---AT-A-----TTCAAA------------------ACATT-TCAATaatgttgatttgaaacaattt
gi|17 : TGTTTG-CGA-TTTATTCATTCC-CT-GCGAAA-TCAAA-CTGATATTGAAT--AA------------T---AC-A-----CTG-AA------------------ATATTCTAAACGG--TTTCATAATCGG-A--T--TT--T----CAA------A-----A------at
gi|18 : ttaatcgGATTACGAAATTGACACG----ATGG-TTTTAATTTC-ACTATATGCTCA-CGA-TTTATCCTTTTC-CA-GCGA-----------CATGGTGAAT--AA------------T---
gi|2 : tactgtgAGATTGGTAAATTAACATGGATGATGG-TTTTAATTTG-AC--T--GTTAAACGA-TTTATTCCTTTT-CC-AGGAAA-TTAAA-CCCATGGTGAAT--AC------------T---ACGA-----CT-----------------------TACT-TCAATGC--TTTTGTAATCTGTA--T-ATT--TAAAGTAG------A-----T------TTTCCTATATCAT-------A---AACAT-GAA-AT--TAA-AGCC---ATCGCAATTA-TACCCT--TG-TT-AAAAAATCAT-G-AATTT-TAGCACCATGGAATT
gi|3 : gtGACTGGGAAATTAACCCA----ATGG-TTCTTATTTC-AG--TATGTTTA-CAA-TTTATAATTTTT-CC-ACAAAA-TTAAT-CCCACGGTGATT--AA------------TTAGAT-A-----TCAGAA------------------ACAAT-TCAA--A--TT---TAA----AA---------G----TAG------A-----T------TTTCCT------A-------T---AATGT-GAA-GT--TAA-AACC---ATC---ATTA-gaagca
gi|4 : gtacatgaagacactgttATAAACACG----ATGG-TTTCAATTTC-AC--CATGTTCA-CGATTTTAATCTTTTT-CC-GTGAAAGTT----CACACAGTGAA--------------------------------AAAT------------------ATATT-TCAACGG--TTTCATAATAAGAAAGT-AATAAC----TAG------A-----T------TTCCCT------T-------T---AGTGTAAAA-A---CAA-AACC---ATCGTGACTG-TGCCCT--TG--TAAACAAATCGT-GAAA----AAGCGCCGTGGCATCActtggagtacaaatgatatctaaatttgagacatccctgactgt
gi|5 : tattgtacattgagatacatgtAGATTGGGAAATTAACA-A----ATGGTTTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TTTAA-CCTGTAGTGAAT--GA------------T---AC-A-----TTTAAA------------------ATACT-TCAATGT--TTTCTTAATCAGAA--TCATT--T----TAA------A-----A--------TCCT------T-------T---AACGT-GAA-G---TAA-AAAC---ATCGCGATTA-TGTCCT--TG-TTTAAAACAT-GT-AAAATTT-TAGCACCATGGAATTAa
gi|6 : AGATTGGGAAATTAACA-A----ATGG-TTTTAATTTC-AA--TATATTCA-TGA-TTTATTCTTTCC-CC-GCGAAA-TTTAA-CCTGTAGTGAAT--GA------------T---AC-A-----TTTAAA------------------ATACT-TCAATGTTGTTTCTTAATCAGAA--TCATT--T----TAA------A-----A--------TGCT------T-------T---AACGT-GAA-G---TAA-AAAC---ATCGCGATTA-TGTCCT--TGTTTAAAAACAT-GTAAAAATTT-TAGCACCATGGAtt
gi|7 : CA----ATGG-TTTTA-TTTC-AC--CATATTTA-CGA-TCAATGCTTTTC-TT-GAAAAA-TTAAAACCCATAATGAAT--GA------------T---AC-C-----TCAAAA------------------ATATC-TCAATAC--TTCCATTATCAGAA--T---T--T----CAA------AGAGAGA------TTTTCA------T-------A---AATGT-GAA-A---TTA-AACC---GTCATGTTTT-TGTCCT--TA-TTAAAAAAATTGT-AAAA--T-TAGCACCGTAGAAT
gi|8 : TGG-TTTTAATTTTTAC--CATGTTTA-CGA-TTT----TTTCC-CC-GCGAAA-TTAAG-CCCATAATGAAT--GA------------C---AC-A-----TTTAAA------------------ATATT-TCAATGG--TCTCATAATCGG----T-ATT--T----TAA------A-----AGTAGATTTTCCT------T-------T---AACGT-GAA-A---TAATAACC---ATCACGATTA-TGTCCT--TA-TT-AAAAAATTGT-AAAATTT-TAGCATCGTGAAATT
gi|9 : AACACT----ATGG-TTT-AATATC-AC--TATGTTCA-TCA-TCTATAATTTTT-CT-GCGAAA-TTAAA-CCCATAGTGAATATGG------------T---AC-ACAGTATTGGAC------------------TTATT-TCAATGA--T--CATA---GGAA--T-CTT--A----TAA------A-----A------TT----------------------------GAT-G----AA-AACC---ATCAAAATTG-TGCCCT--TG---AAATAGATCAT-GAGATTT-TAGTTTCATGGAATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CCCTATAAAGAACATTAGAGAAATATGGTGAAAATTTAGTACAGTGGAATTATAACTACTTAC