lowQualScore : 1111 111111 111111 1111 1 11 1111 11111111 1 11111 111 1
lowQualScore : 1 99 3 333 22 3 6666 77 22 111111 9 77777 3 77 888 0 66 5 0 0 888 444444 4 66 4 1 4 0000 0 66 3 777777 4 4 9999 4 66 4 55 66 55 4 66 8888 2 33 1 9999 8 4 4 8 3 4 0 66 4 4 6 1 3 999 77 4 4 4 5 8888 0000 5 888 33333333 6 6 6 3 6 99 6 6 6 99 6 22 55 3 3 3 99999 2 2 66 2 22222 333 555 1 3 22 1 1 99 3 44 1 5 333 1 8 1 44
lowQualScore : . .. . ... .. . .... .. .. ...... . ..... . .. ... . .. . . . ... ...... . .. . . . .... . .. . ...... . . .... . .. . .. .. .. . .. .... . .. . .... . . . . . . . .. . . . . . ... .. . . . . .... .... . ... ........ . . . . . .. . . . .. . .. .. . . . ..... . . .. . ..... ... ... . . .. . . .. . .. . . ... . . . ..
lowQualScore : 9 55 6 222 55 6 2222 33 88 555555 2 77777 1 99 888 1 99 0 1 5 888 888888 4 11 4 9 4 6666 0 99 6 888888 4 4 4444 4 11 4 00 11 22 4 11 1111 9 66 0 9999 9 4 7 9 7 4 8 11 4 4 7 8 3 222 99 0 4 5 0 1111 6666 0 888 11111111 7 7 7 3 7 22 7 7 7 22 7 00 55 6 6 6 11111 5 5 33 5 99999 999 777 8 6 00 8 8 00 6 33 8 5 222 8 0 8 33
consensus : ATTC-TCTCA-CCAGAGG-G---CGTT--GT-ACGT---CTTC-NCT--C--CA--ACACC-T-----CTGTTAT-CGTCT--AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC--A-TACGTC-ACTGGT-TAGAT--G-TAAACAT----GG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-----CAG-A-CGA--TAA-CAGA-----GG---TGT---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CCC-T--CTGGTGAGAGAT
Reference ( gi|3 ) : ATTC-TCTCA-TCAGAGG-G---CGTT--GT-ACGT---TTTC-TCT--C--CA--ACACC-T-----CTGTTAT-CGTCT--AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC--A-TACGTC-ACTGGT-TAGAT--G-TAAACAT----GG-AA---CA---A----ACACAAAAA-C-TTGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-----CAG-A-CGA--TAA-CAGA-----GG---TGT---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CAC-T--CTGGTGAGAGAT
gi|4 : ATTC-TCTCA-CCAGAGG-G---CGTT--GTTACGT---TTTC-TCT--C--CA--ACACC-T-----CTGTTAT-CGTCT--AAA---TT-C--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AATTTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTC-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--A-A-ACAATTC--AAA-TTGTTGGAAATA-TTTGCT--TTGCT-C-TC-CAAT-AACTTTC-ACTTCG--T-TAGATC-AGTGACGT-AACATTATACG-TC---AC--A-TACGTC-ACT-GT-TA-AT--G-TAA--AT----GG-AA---CA---A----ACACAAAAA-C-TTGTA-AA-GTCGGTAG-CTTCA--TG-TG-ACGAAAA-T-GAGAG-TAC-GGAAGGAACAAG-AAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-----CAG-A-CGA--TAA-CAGA-----GG---TGT---A-A-G-TG-AA-GC-TGCGTT--AA-CG-C---G-CCCTT--CTGGGAAGAG
gi|2 : atcATTCGTCTCA-CCAGAGG-G---CGTT--GTTACGT---TTTC-TCT--CAACA--ACTCC-T-----CTGT-AT-CGTCT--AGAAAGTTACCCAAGA-TTTTTGTAA---AACGTT-AGTTTTTT-----TATATTT-ACAG--AA-TTT--ATTGTGTATCATATTTAAAAAGAA-CT--GAAAGACTTATCTTCTTT-C--GCATATTAT-TGGGTA-TT----AAAA-CCG--T-AAA--CTACAAT-AA--ACA-AC-ATTC--AAATTTG-T-GAAATATTTTGCT--TTGTT-C--CA-AAT-AACTTTC-ACTC-G--TGTAGATC-AGTGACTT-AACATTATACG-TC---AC--A-TACGTC-ACT-GC-TAGAT--G-TAAACAT----GGAAA---CAAACA----ACACAAAAA-CTTTTTAGAA-GTCGGTAG-CTTCA--TG-TG-ACG-AAA-TAGAGAGTTAC---GAAGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G------AT-A-CGA--TAA-CAGAT----GG---TGT---A-A-G-TGAAA-GCTTGCG-T--AA-CG-C---G---C-C--CTTGTGAGA
gi|2 : ATTC-TCACA---AGGGC-G---CGTTACGC-AAGC---TTTC-ACT--T------ACACCAT-----CTGTTAT-CGTattg
gi|6 : attcgtctcaccagagggcgttgttacgttttctctcaacaactcctctgtatcgtctagaaagttacccaagatttttgtaaaacgttagtttttttatatttacagaatttattgtgtatcatatttaaaaagaactgaaagacttatcttctttcgcatattattgggtattaaaaccgtaaactacaataaacaacattcaaatttgtgaaatattttgctttgttccaaataactttcactcgtgtagatcagtgacttaacattatacgtcacatacgtcactgctagatgtaaacatggaaacaaacaacacaaaaactttttagaagtcggtagcttcatgtgacgaaatagagagttacgaagaacaagaaaaagctctggccgaactacttttgatATTC-TCTCA-CCAGAGG-----CGTT--GT-ACGT---TTTC-TCT--C--CA--ACACC-T-----CTGTTAT-CGTCT--AAA---TTAC--AGAA-TTT--GTTA---AACGTTTAGTTTTT------AATATTT-ACAG--AA-TTT--ATCGT-TATCATATT----AAAAAACT--GAAA--TTTATCTTTTT--G--GC-CATTAT-TGGGTA-TTTATTAAAA-CGAATT-AAA--ACACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTT-G-T--TTGCT-C-TCGCA-T-AA-TTTC-ACTTAG--T-TAGATC-AGTGACGTAATCA-TATACG-TCA--AC--A-TAT-TC-ACTGGT-TAGATAAG-TAAACAT----GG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTA---TCCA--TG-T--ACGAAAATTAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCTGAA--CTA-C-T-TT-G-----CAG-A-Ctg
gi|8 : cATTC-TCTCA-CCAGAGG-G---CGTT--GT-ACGT---TTTC-TCT--CG-CA--ACACC-T-----CTGTTAT-CGTCT--AAA---TTAC--AAGAATTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTGTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTT-G--GCA-ATTAT-TGGGTA-TT----AAAA-CGA--TAAAA--CTACAATAAA--ACA-AC-ATTC--AAATTTG----------TTTG--------T-C-TCACAATAAATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---ACA-A-TACGTC-ACTGGT-TAGAT--G-TAAACAT----GG-AA---C
gi|13 : ATTC-TCTCA-CCAGAGG-G---CGTT--GT-ACGT---TTTC-TCT--C--TA--ACACC-T-----TCGTTAT-CGTCT--AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTTA----AATATTC-ACAG--AA-TTTTTATCGT-TATCAT
gi|19 : cTTC-TCTCA-CCAGAGG-G---CGCG--TT-ACG
gi|7 : tctcaccagagggcgttgtacgttttctctccaagtgaagcttgTC-TCTCA-CCAGAGGCG---CGTT--AC-GCAG---CTTC-ACT--T------ACACCAT-----CTGTTAT-CGTCT--
gi|1 : gtttagttttttaaaatttcagaatttttatcgttatcatatttaaactatgaaagacttatctattggcatattattgggtattaaaaacgataaaactacaataaaacacattcaaatttgttgaactattttgctttgcttctcgcaataactttccacttagttagatcgagtgacgtatcattatacgtcacaatcgtcactgttagatgtaaacatggacaaaacacaaaaactgtagaagtcgtagcttcatgtgaacgaaaatagagagttacggggaggaacaagaaaaagctctggcgaactacttttgcTC-TCTCA-CCAGAGT-G---CTGT--GT--CGT---TTTCCTCTTCC--CATTACACC-TTTTTTCTGTTATTCGTCTT-AAA---TTAC--AAGA-TTTTTGTTACATAGCGTTTAGTTTTT------AATATAT-ACAGTTAT-TTTTTATCGT-TATCATCTA----AGGAATCT--GAAAGACTTATCTTTTTT-GTGGTATATTATGTGGGTA-TT--------------T-AAA--C---GATAAA-----------CT--AGATTT------------TCGCG--TGTCT-C-TCG-AAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGTGATCATT-TGCG-TC---AC--AATACGTCGACTGGTGTAGAT----TAAACAT----GG-AAGATCA---ATTCGACAAAAAAATC-TTGTAGATTGTC-GTAGTCTTCAACTG-TG-ACGAAAT-AAGAGAGTTAC-TGGAGTAACAAGAAAGAGCTCTGGGCCGAGATCTA-CTT-TT-G-----CAG-AGCGGATTAA-CCGA------G---TGT---A-ATGTTG-AATGCTTGCG-T--AA-CG-C---G-CCC-T--CTGGTGAGAGAt
gi|5 : TC-TCCCA-CCAGAGG-G---CGTT--GT-ATGC---TA-C-ACT--C--CA--ACACC-T-----CTGTTAT-CATCT--GAA---TTAC--AAAA-ATCTTGTAA---AACGT--AGTTTTTTTTAAAAATGTTTTACAG--AA-TTTTTATCGT-TAT--------------A--T--GAA---CTTCTCTTTT-T-G--GCATATTGT-TAGATA-TT----AAAA-CAA--A-TAC--CTACA--AAG--ACACGC-ATCCAAAAATTT-TC-AAATT-TTTAGATAGTTACCACATCGTCATGAAATTTT-ACATGGGAC-TAGAT--AATTACAT-GT-ATTATGCACTCTATAC--A-TATGT
gi|5 : aTC-TCTCA-CCTGAGG-G---CGTT--TT-ACGCAAGCTTC-ACT--T------ACACC-T-----ATGTTAT-CATCT--acatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcagatgataacataggtgtaagtgaagcttgcgtaaaacgccctcaggtgagagatt
gi|20 : atctcccaccagagggcgttgtatgctacactccaacacctctgttatcatctgaattacaaaaatcttgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcTC-TCTCA-CCAGAGGCG---CGTT--AC-GCAG---CTTC-ACT--T------ACACCAT-----CTGTTAT-CGTCT--tt
gi|14 : ctacttttgcTC-TCTCA-CCAGAGG-G---CGTT--GT-ACG----CTAC-ACT--C--CA--ACA
gi|24 : TC-TCTCC-CCAGAGG-G---CGTT--GT-ATG----CTAC-ACT--C--CA--ACAgtgtaagtgaagcttgcgtaacgcgccctctggtgagagat
gi|21 : aaTC-TCTCA-CCAAAGG-G---CGAT--GT-AC-T---CTAC-ACT--C--CA--ACAa
gi|4 : aaC-TCTTC-CCAGAAG-GGCGCGTT--A--ACGCAG-CTTC-ACT--T------ACACC-T-----CTGTTAT-CGTCT--aatgtaggtgaa
gi|18 : atcattctctcaccagagggcgttgttacgttttctctccaacacctctgttatcgtctaaattcaagatttttgtaaaacgtttagttttttaatatttacagaattttttatcgttatcatattaaaaactgaaagacttatcttttcggcatattattgggtattaaaacgataaactacaataaaaaacaattcaaattgttggaaatatttgctttgctctccaataactttcacttcgttagatcagtgacgtaacattatacgtcacatacgtcactgttaatgtaaatggaacaaacacaaaaacttgtaaagtcggtagcttcatgtgacgaaaatgagagtacggaaggaacaagaaaagctctggccgaactacttttgcC-TTTCA-CCAGAGG-G---CGTT--GT-ACGC---T
gi|16 : C-TTTCA-CCAGAGG-G---CGTT--GT-ACG----CTAC-ACT--C--CA--ACAacactccgtgtaagtgaagcttgcgtaacgcgccctctggagagaga
gi|19 : -TCTCA-CCAGAGG-G---CGTT--GT-ACGT---TTTC-TCT--C--CA--Aagtgtaagtgaagcttgcgtaacgcgccctctggcgaga
gi|17 : -TCTCAACCAGCAG-G---CGTT--GT-ACGT---TTTC-TCT--C--CA--ACAgtgaagcttgcgtaacgcgccctctggtgagagaa
gi|26 : -TCTCA-CCAGAGG-G---CGTT--GT-ACG----CTAC-TCC--C--CA--ACAgtgaagcttgcgtaacgcgaccctctggtgagagat
gi|12 : aAGAGG-G---CGCG--TT-ACGCAAGCTTC-ACT--T------ACACC-T-----CTGTTAT-CGTCTGCGAA---------AAGA-T-----------AGCATTT-GTTTTTT-----
gi|7 : aactagacagaaatactcatactttagtagactccgacttgaaagaaacgatgacatatttatgagcgggtgacGTTTAGTTTTTT-----AAAATTT--CAG--AA-TTTTTATCGT-TATCATATT----TAAA--CTATGAAAGACTTATCTATT---G--GCATATTAT-TGGGTA-TT----AAAAACGA--T-AAAA-CTACAATAAA--ACA--C-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCTTC-TCGCAAT-AACTTTCCACTTAG--T-TAGATCGAGTGACGT-ATCATTATACG-TC---AC--A-ATCGTC-ACTG-T-TAGAT--G-TAAACAT----GG-AC---AA---A----ACACAAAAA-C--TGTAGAA-GTC-GTAG-CTTCA--TG-TGAACGAAAA-TAGAGAGTTACGGGGAGGAACAAGAAAAAGCTCT-GG-CGAA--CTA-CTT-TT-G-----CAG-A-CGA--TAA-CAGAT----GG---TGT---A-A-G-TG-AA-GC-TGCG-T--AA-CG-C---G-C-C-T--CTGGTGAGAGATagg
gi|10 : GTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CC--GAAAGACTTATCTTTTTTTG--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAAA-CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGTT--TTGCT-T-TCGTAAT-AATTTTC-ACTTAG--T-TAGTTC-AGTGACGT-ATCATTATACG-TC---AC--A-TACGTC-
gi|9 : AAAGACTTATCCTTTTT-A--GCATGTTAT-TGGGTAATT----AAAA-CGA--T-AAAAACTACAATAAAACACA-AC-ATTC---AATTTGTT-GAACTATTTTGTT--TTGCT-C-TCGCAAT--ATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATTATTATACG-TC---AC--A-TACGTC-ACTGGT-TAGAT--GATAAACAT----GG-AA---CA---A----ACAC-AAAA-C-TCATAGAA-GGC-GTAG-CTCCA--TGATG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGA
gi|7 : GTGACGT-ATAATGATACG-TC---AC--
gi|8 : gtttagttttttaaaatttcagaatttttatcgttatcatatttaaactatgaaagacttatctattggcatattattgggtattaaaaacgataaaactacaataaaacacattcaaatttgttgaactattttgctttgcttctcgcaataactttccacttagttagatcgaGTGACGT-ATAATGATACG-TC---AC--aatcgtcactgttagatgtaaacatggacaaaacacaaaaactgtagaagtcgtagcttcatgtgaacgaaaatagagagttacggggaggaacaagaaaaagctctggcgaactacttttgcagacgataacagatggtgtaagtgaagctgcgtaacgcgcctctggtgagagat
gi|9 : attctctcaccagagggcgttgtacgttttctctcgcaacacctctgttatcgtctaaattacaagaatttttgtaaaacgtttagttttttaatatttacagaattgttatcgttatcatattaaaaactgaaagacttatctttttggcaattattgggtattaaaacgataaaactacaataaaacaacattcaaatttgtttgtctcacaataaattttcacttagttagatcaGTGACGT-ATAATAATACG-TC---ACTGA-T-------CTAAC-TAAGT--G-AAAATATTGCGAG-AG---CA---A----A-ACAAAAaatacgtcactggttagatgtaaacatggaac
gi|2 : aaagacttatcctttttagcatgttattgggtaattaaaacgataaaaactacaataaaacacaacattcaatttgttgaactaAAAAATCTTG-GGT--AA--CT---TT-CT--------AG-A-CGA--TA--CAGA-----GGAGTTGTT--G-A-G-AG-AA-A---ACG-T--AA-CAAC---G-CCC-T--CTGGTGAGAatacgtcactggttagatgataaacatggaacaaacacaaaactcatagaaggcgtagctccatgatgacgaaaatagagagttacgggaggaacaaga
gi|15 : attcgAA--CTA-CTTGTT-G-----CAGGA-C-A--TAAACAGA-----GG---TGT---ACA-G-TG-AA-GCTTGCGGT--AA-CG-C---G-C-C-TG-CTGGTGAGAGATgtaaaacgttagtttttttatatttacagaatttattgtgtatcatatttaaaaagaactgaaagacttatcttctttcgcatattattgggtattaaaaccgtaaactacaataaacaacattcaaatttgtgaaatattttgctttgttccaaataactttcactcgtgtagatcagtgacttaacattatacgtcacatacgtcactgctagatgtaaacatggaaacaaacaacacaaaaactttttagaagtcggtagcttcatgtgacgaaatagagagttacgaagaacaagaaaaagctctggccgaactacttttgatacgataacagatggtgtaagtgaaagcttgcgtaacgcgcccttgtgagaattg
gi|5 : gccaga--CTA-CTT-T--G-----CAG-A-TGA--TAA-CATA-----GG---TGT---A-A-G-TG-AA-GCTTGCG-T--AA-AA-C---G-CCC-T--CAGGTGAGAGATt
gi|20 : atctcccaccagagggcgttgtatgctacactccaacacctctgttatcatctgaattacaaaaatcttgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacac--CTA-CTT-TT-G-----CAG-A-CGA--TAA-CAGAT----GG---TGT---A-A-G-TG-AA-GC-TGCG-T--AA-CG-C---G-C-C-T--CTGGTGAGAGAt
gi|12 : --CTATCTT-TTCG-----CAG-A-CGA--TAA-CAGA-----GG---TGT---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CCC-T--CTAG
gi|5 : aactagacagaaatactcatactttagtagactccgacttgaaagaaacgatgacatatttatgagcgggtgacaaaaaacaaatgA-TTT-TT-GTAATTCAG-A-TGA--TAA-CAGA-----GG---TGTTG-G-A-G-TG-TA-GCATAC-----AA-CG-C-----C-C-T--CTGGTGGGAGATg
gi|4 : AG-A-CGA--TAA-CAGA-----GG---TGTTG-G-A-G-AG-AA-A---ACG-T--AA-CAAC---G-CCC-T--CTGGTGAGAGActtgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcagatgataacataggtgtaagtgaagcttgcgtaaaacgccctcaggtgagagatt
gi|6 : atcatAG-A-CGA--TAA-CAGA-----GG---TGTTG-G-A-G-AG-AA-A---ACG-TACAA-CG-C-------C-T--CTGGTGAGAGAaaattcaagatttttgtaaaacgtttagttttttaatatttacagaattttttatcgttatcatattaaaaactgaaagacttatcttttcggcatattattgggtattaaaacgataaactacaataaaaaacaattcaaattgttggaaatatttgctttgctctccaataactttcacttcgttagatcagtgacgtaacattatacgtcacatacgtcactgttaatgtaaatggaacaaacacaaaaacttgtaaagtcggtagcttcatgtgacgaaaatgagagtacggaaggaacaagaaaagctctggccgaactacttttgcagacgataacagaggtgtaagtgaagctgcgttaacgcgcccttctgggaagag
gi|8 : catAG-A-CGA--TAA-CAGA-----GG---TGTTGCG-A-G-AG-AA-A---ACG-T--AC-AA-C---G-CCC-T--CTGGTGAGAGAaaattacagaatttgttaaacgtttagtttttaatatttacagaatttatcgttatcatattaaaaaactgaaatttatctttttggccattattgggtatttattaaaacgaattaaaacacaataaaacaacattcaaatttgttgaactatttgtttgctctcgcataatttcacttagttagatcagtgacgtaatcatatacgtcaacatattcactggttagataagtaaacatggaacaaacacaaaaactcgtagaagtcgtatccatgtacgaaaattagagagttacgggaggaacaagaaaaagctctggctgaactactttgcagac
gi|1 : atAG-A-CGAA-TAA-CAGAAAAAAGG---TGT---A-ATG-GG-AA-GA--GGA-A--AA-CGACACAG-CAC-T--CTGGTGAGAGAaaattacaagaatttttgtaaaacgtttagttttttaatatttacagaattgttatcgttatcatattaaaaactgaaagacttatctttttggcaattattgggtattaaaacgataaaactacaataaaacaacattcaaatttgtttgtctcacaataaattttcacttagttagatcagtgacgtatcattatacgtcacaatacgtcactggttagatgtaaacatggaac
gi|13 : AG-A-CGA--TAA-CGAA-----GG---TGTTA-G-A-G-AG-AA-A---ACG-T--AC-AA-C---G-CCC-T--CTGGTGAGAGAtaaattacaagatttttgttacatagcgtttagtttttaatatatacagttattttttatcgttatcatctaaggaatctgaaagacttatcttttttgtggtatattatgtgggtatttaaacgataaactagattttcgcgtgtctctcgaataactttcacttagttagatcagtgacgtgatcatttgcgtcacaatacgtcgactggtgtagattaaacatggaagatcaattcgacaaaaaaatcttgtagattgtcgtagtcttcaactgtgacgaaataagagagttactggagtaacaagaaagagctctgggccgagatctacttttgcagagcggattaaccgagtgtaatgttgaatgcttgcgtaacgcgccctctggtgagaga
gi|14 : catAA-CAG-----------TGT---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CCC-T--CTGGTGAGAGATaaattacaagatttttgtaaaacgtttagttttttaaatattcacagaatttttatcgttatcat
gi|16 : tctctcaccagagggcgttgtacgctacactccA-----AG---TGT---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CCC-T--CTGGCGAGA
gi|18 : ctttcaccagagggcgttgtacgctacactccaacG---TGT---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CCC-T--CTGGAGAGAGA
gi|25 : ctttcaccagagggcgttgtacgctacactccGT---A-A-G----AA-GCTTGCG-T--AA-CG-C---G-CGC-TCCCTGGTGAGAGA
gi|22 : GT---T-A-G-TG-AA-GCTTGCG-TC-AACCG-C---G-CCC-T--CTGGTGAc
gi|19 : ---A-A-G-TG-AA-GCTTGCG-T--AA-CG-C---G-CCC-T--CTGGTGAGAGAttagattggg
gi|17 : tctcaccagagggcgttgtacgttttctctcc-A-G-TG-AA-GCTTGCG-T--AA-CG-C---GACCC-T--CTGGTGAGAGATa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GATATATAACAATAAAACCTCACACCCTTAGTATCCATAAGTTCTTCGAAATCGTTACCAATCGTCATGAAATTTTATGTGTGAGTAGATGAAATAATTATAGATGAATACACAGTGAGGAAATTTCTGTCATCTTTTTGGTAATTTCGGTGATTCTATGTAC
Unaligned ( gi|23 ): TCTCGCATATGAAGTTTGCATAACATGCCCTCTTATAAGAGAATG
Alignments
lowQualScore : 11111 111111 11 111 11111111 1 1
lowQualScore : 2 2 2 2 9 2 33 33 55 33 22222 5 5 888 66 5 888 444444 4 55 4 0 4 9999 8 66 2 444 55 4 4 8888 4 55 4 33 55 4 4 55 444 1 11 7777 8 4 3 8 2 4 55 4 4 8 4 111 4 4 4 2 5 8888 5 888 33333333 5 5 6 5 1 5 77 5 5 5 66 6 55 4 4 4 4 4 66 4 0 2 2 2 2 2 4 2 2 2 2 33
lowQualScore : . . . . . . .. .. .. .. ..... . . ... .. . ... ...... . .. . . . .... . .. . ... .. . . .... . .. . .. .. . . .. ... . .. .... . . . . . . .. . . . . ... . . . . . .... . ... ........ . . . . . . .. . . . .. . .. . . . . . .. . . . . . . . . . . . . ..
lowQualScore : 5 5 5 5 4 4 55 44 99 77 55555 0 0 888 99 0 888 888888 0 55 0 8 0 4444 9 11 3 666 55 0 0 5555 0 55 0 55 55 0 0 55 555 6 44 0000 0 0 2 0 3 0 55 0 0 0 0 000 0 0 4 5 0 1111 0 888 11111111 7 7 3 7 4 7 99 7 7 7 44 7 55 0 0 0 0 0 11 0 9 5 5 4 4 4 7 4 4 4 4 22
consensus : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNCT-CT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
Reference ( family-3175 ) : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTTCN-CT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
gi|1 : TC-TCTCA-CCAGAGTGCTGTG-T--CGTTTTCCTCTTCC--CATTACACCTTTTTTCTGTTATTCGTCTTAAA---TTAC--AAGA-TTTTTGTTACATAGCGTTTAGTTTTT------AATATAT-ACAGTTAT-TTTTTATCGT-TATCATCTA----AGGAATCT--GAAAGACTTATCTTTTTT-GTGGTATATTATGTGGGTA-TT--------------T-AAA--C---GATAAA-----------CT--AGATTT------------TCGCG--TGTCT-C-TCG-AAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGTGATCATT-TGCG-TC---AC-AATACGTCGACTGGTGTAGAT----TAAACATGG-AAGATCA---ATTCGACAAAAAAATC-TTGTAGATTGTC-GTAGTCTTCAACTG-TG-ACGAAAT-AAGAGAGTTAC-TGGAGTAACAAGAAAGAGCTCTGGGCCGAGATCTA-CTT-TT-GCAG-AGCGGATTAA-CCGA--GTGTA-ATGTTG-AATGCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGA
gi|10 : GTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CC--GAAAGACTTATCTTTTTTTG--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAAA-CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGTT--TTGCT-T-TCGTAAT-AATTTTC-ACTTAG--T-TAGTTC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-
gi|12 : --CTATCTT-TTCGCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTAG
gi|13 : aactagacagaaatactcatactttagtagactccgacttgaaagaaacgatgacatatttatgagcgggtgacaaaaaacaaatgATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTCT-CT--C--TA--ACACCT-----TCGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTTA----AATATTC-ACAG--AA-TTTTTATCGT-TATCATg
gi|14 : cTC-TCTCA-CCAGAGGGCGTTG-T-ACG-CTACA-CT--C--CA--ACA
gi|14 : AA-CAG----TGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGATgtgtaagtgaagcttgcgtaacgcgccctctggtgagagat
gi|15 : tctctcaccagagggcgttgtacgctacactccAA--CTA-CTTGTT-GCAGGA-C-A--TAAACAGA-GGTGTACA-G-TG-AA-GCTTGCGGT-AAC-GCG-CCT-G--CTGGTGAGAGAT
gi|16 : gccagaC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTACA-CT--C--CA--ACAt
gi|16 : A-AGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGCGAGAagtgtaagtgaagcttgcgtaacgcgccctctggcgaga
gi|17 : ctttcaccagagggcgttgtacgctacactccaac-TCTCAACCAGCAGGCGTTG-T-ACGTTTTCT-CT--C--CA--ACA
gi|17 : -A-G-TG-AA-GCTTGCG-T-AAC-GCGACCC-T--CTGGTGAGAGATgtgaagcttgcgtaacgcgaccctctggtgagagat
gi|18 : tctcaaccagcaggcgttgtacgttttctctccaacC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTACA-CT--C--C
gi|18 : GTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGAGAGAGAgtgtaagtgaagcttgcgtaacgcgccctctggagagaga
gi|19 : ctttcaccagagggcgttgtacgctacactcc-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTCT-CT--C--CA--A
gi|19 : A-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAgtgaagcttgcgtaacgcgccctctggtgagagaa
gi|2 : tctcaccagagggcgttgtacgttttctctccATTCGTCTCA-CCAGAGGGCGTTG-TTACGTTTTCT-CT--CAACA--ACTCCT-----CTGT-AT-CGTCT-AGAAAGTTACCCAAGA-TTTTTGTAA---AACGTT-AGTTTTTT-----TATATTT-ACAG--AA-TTT--ATTGTGTATCATATTTAAAAAGAA-CT--GAAAGACTTATCTTCTTT-C--GCATATTAT-TGGGTA-TT----AAAA-CCG--T-AAA--CTACAAT-AA--ACA-AC-ATTC--AAATTTG-T-GAAATATTTTGCT--TTGTT-C--CA-AAT-AACTTTC-ACTC-G--TGTAGATC-AGTGACTT-AACATTATACG-TC---AC-A-TACGTC-ACT-GC-TAGAT--G-TAAACATGGAAA---CAAACA----ACACAAAAA-CTTTTTAGAA-GTCGGTAG-CTTCA--TG-TG-ACG-AAA-TAGAGAGTTAC---GAAGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-AT-A-CGA--TAA-CAGATGGTGTA-A-G-TGAAA-GCTTGCG-T-AAC-GCG-CCC-T--T--GTGAGAa
gi|20 : --CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAattg
gi|21 : TC-TCTCA-CCAAAGGGCGATG-T-AC-TCTACA-CT--C--CA--ACA
gi|22 : aaGTT-A-G-TG-AA-GCTTGCG-TCAACCGCG-CCC-T--CTGGTGAaatgtaggtgaa
gi|23 : -TG-AA-GTTTGCA-T-AAC-ATG-CCC-T--CTTATAAGAGAttagattggg
gi|24 : tctcgcataTC-TCTCC-CCAGAGGGCGTTG-T-ATG-CTACA-CT--C--CA--ACAatg
gi|25 : aaGTA-A-G----AA-GCTTGCG-T-AAC-GCG-CGC-TCCCTGGTGAGAGAa
gi|26 : -TCTCA-CCAGAGGGCGTTG-T-ACG-CTACT-CC--C--CA--ACAc
gi|3 : aATTC-TCTCA-TCAGAGGGCGTTG-T-ACGTTTTCT-CT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TTGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CAC-T--CTGGTGAGAGAT
gi|4 : ATTC-TCTCA-CCAGAGGGCGTTGTT-ACGTTTTCT-CT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TT-C--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AATTTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTC-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--A-A-ACAATTC--AAA-TTGTTGGAAATA-TTTGCT--TTGCT-C-TC-CAAT-AACTTTC-ACTTCG--T-TAGATC-AGTGACGT-AACATTATACG-TC---AC-A-TACGTC-ACT-GT-TA-AT--G-TAA--ATGG-AA---CA---A----ACACAAAAA-C-TTGTA-AA-GTCGGTAG-CTTCA--TG-TG-ACGAAAA-T-GAGAG-TAC-GGAAGGAACAAG-AAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GC-TGCGTT-AAC-GCG-CCCTT--CTGGGAAGAG
gi|5 : atcTC-TCCCA-CCAGAGGGCGTTG-T-ATG-CTACA-CT--C--CA--ACACCT-----CTGTTAT-CATCT-GAA---TTAC--AAAA-ATCTTGTAA---AACGT--AGTTTTTTTTAAAAATGTTTTACAG--AA-TTTTTATCGT-TAT--------------A--T--GAA---CTTCTCTTTT-T-G--GCATATTGT-TAGATA-TT----AAAA-CAA--A-TAC--CTACA--AAG--ACACGC-ATCCAAAAATTT-TC-AAATT-TTTAGATAGTTACCACATCGTCATGAAATTTT-ACATGGGAC-TAGAT--AATTACAT-GT-ATTATGCACTCTATAC-A-TATGT
gi|5 : a--CTA-CTT-T--GCAG-A-TGA--TAA-CATA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAA-ACG-CCC-T--CAGGTGAGAGATacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcagatgataacataggtgtaagtgaagcttgcgtaaaacgccctcaggtgagagatt
gi|6 : atctcccaccagagggcgttgtatgctacactccaacacctctgttatcatctgaattacaaaaatcttgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacATTC-TCTCA-CCAGAGG-CGTTG-T-ACGTTTTCT-CT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AGAA-TTT--GTTA---AACGTTTAGTTTTT------AATATTT-ACAG--AA-TTT--ATCGT-TATCATATT----AAAAAACT--GAAA--TTTATCTTTTT--G--GC-CATTAT-TGGGTA-TTTATTAAAA-CGAATT-AAA--ACACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTT-G-T--TTGCT-C-TCGCA-T-AA-TTTC-ACTTAG--T-TAGATC-AGTGACGTAATCA-TATACG-TCA--AC-A-TAT-TC-ACTGGT-TAGATAAG-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTA---TCCA--TG-T--ACGAAAATTAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCTGAA--CTA-C-T-TT-GCAG-A-Ct
gi|7 : cGTTTAGTTTTTT-----AAAATTT--CAG--AA-TTTTTATCGT-TATCATATT----TAAA--CTATGAAAGACTTATCTATT---G--GCATATTAT-TGGGTA-TT----AAAAACGA--T-AAAA-CTACAATAAA--ACA--C-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCTTC-TCGCAAT-AACTTTCCACTTAG--T-TAGATCGAGTGACGT-ATCATTATACG-TC---AC-A-ATCGTC-ACTG-T-TAGAT--G-TAAACATGG-AC---AA---A----ACACAAAAA-C-T-GTAGAA-GTC-GTAG-CTTCA--TG-TGAACGAAAA-TAGAGAGTTACGGGGAGGAACAAGAAAAAGCTCT-GG-CGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAT
gi|8 : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTCT-CT--CG-CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGAATTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTGTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTT-G--GCA-ATTAT-TGGGTA-TT----AAAA-CGA--TAAAA--CTACAATAAA--ACA-AC-ATTC--AAATTTG----------TTTG--------T-C-TCACAATAAATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---ACAA-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---C
gi|9 : AAAGACTTATCCTTTTT-A--GCATGTTAT-TGGGTAATT----AAAA-CGA--T-AAAAACTACAATAAAACACA-AC-ATTC---AATTTGTT-GAACTATTTTGTT--TTGCT-C-TCGCAAT--ATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATTATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--GATAAACATGG-AA---CA---A----ACAC-AAAA-C-TCATAGAA-GGC-GTAG-CTCCA--TGATG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GATATATAACAATAAAACCTCACACCCTTAGTATCCATAAGTTCTTCGAAATCGTTACCAATCGTCATGAAATTTTATGTGTGAGTAGATGAAATAATTATAGATGAATACACAGTGAGGAAATTTCTGTCATCTTTTTGGTAATTTCGGTGATTCTATGTAC
Alignments
lowQualScore : 11111 111111 11 111 11111111 1 1
lowQualScore : 2 2 2 2 9 1 33 33 55 33 22222 5 5 888 66 5 888 444444 4 55 4 0 4 9999 8 66 2 444 55 4 4 8888 4 55 4 33 55 4 4 55 444 1 11 7777 8 4 3 8 2 4 55 4 4 8 4 111 4 4 4 2 5 8888 5 888 33333333 5 5 6 5 1 5 77 5 5 5 66 6 55 4 4 4 4 4 66 4 0 2 2 2 2 2 4 2 2 2 2 33
lowQualScore : . . . . . . .. .. .. .. ..... . . ... .. . ... ...... . .. . . . .... . .. . ... .. . . .... . .. . .. .. . . .. ... . .. .... . . . . . . .. . . . . ... . . . . . .... . ... ........ . . . . . . .. . . . .. . .. . . . . . .. . . . . . . . . . . . . ..
lowQualScore : 5 5 5 5 4 0 22 44 99 77 55555 0 0 888 99 0 888 888888 0 55 0 8 0 4444 9 11 3 666 55 0 0 5555 0 55 0 55 55 0 0 55 555 6 44 0000 0 0 2 0 3 0 55 0 0 0 0 000 0 0 4 5 0 1111 0 888 11111111 7 7 3 7 4 7 99 7 7 7 44 7 55 0 0 0 0 0 11 0 9 5 5 4 4 4 7 4 4 4 4 22
consensus : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
Reference ( family-3175 ) : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
gi|1 : TC-TCTCA-CCAGAGTGCTGTG-T--CGTTTTCCTCTTCC--CATTACACCTTTTTTCTGTTATTCGTCTTAAA---TTAC--AAGA-TTTTTGTTACATAGCGTTTAGTTTTT------AATATAT-ACAGTTAT-TTTTTATCGT-TATCATCTA----AGGAATCT--GAAAGACTTATCTTTTTT-GTGGTATATTATGTGGGTA-TT--------------T-AAA--C---GATAAA-----------CT--AGATTT------------TCGCG--TGTCT-C-TCG-AAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGTGATCATT-TGCG-TC---AC-AATACGTCGACTGGTGTAGAT----TAAACATGG-AAGATCA---ATTCGACAAAAAAATC-TTGTAGATTGTC-GTAGTCTTCAACTG-TG-ACGAAAT-AAGAGAGTTAC-TGGAGTAACAAGAAAGAGCTCTGGGCCGAGATCTA-CTT-TT-GCAG-AGCGGATTAA-CCGA--GTGTA-ATGTTG-AATGCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGA
gi|10 : GTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CC--GAAAGACTTATCTTTTTTTG--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAAA-CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGTT--TTGCT-T-TCGTAAT-AATTTTC-ACTTAG--T-TAGTTC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-
gi|12 : --CTATCTT-TTCGCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTAG
gi|13 : aactagacagaaatactcatactttagtagactccgacttgaaagaaacgatgacatatttatgagcgggtgacaaaaaacaaatgATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--TA--ACACCT-----TCGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTTA----AATATTC-ACAG--AA-TTTTTATCGT-TATCATg
gi|14 : cTC-TCTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--CA--ACA
gi|14 : AA-CAG----TGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGATgtgtaagtgaagcttgcgtaacgcgccctctggtgagagat
gi|15 : tctctcaccagagggcgttgtacgctacactccAA--CTA-CTTGTT-GCAGGA-C-A--TAAACAGA-GGTGTACA-G-TG-AA-GCTTGCGGT-AAC-GCG-CCT-G--CTGGTGAGAGAT
gi|16 : gccagaC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--CA--ACAt
gi|16 : A-AGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGCGAGAagtgtaagtgaagcttgcgtaacgcgccctctggcgaga
gi|17 : ctttcaccagagggcgttgtacgctacactccaac-TCTCAACCAGCAGGCGTTG-T-ACGTTTTC-TCT--C--CA--ACA
gi|17 : -A-G-TG-AA-GCTTGCG-T-AAC-GCGACCC-T--CTGGTGAGAGATgtgaagcttgcgtaacgcgaccctctggtgagagat
gi|18 : tctcaaccagcaggcgttgtacgttttctctccaacC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--C
gi|18 : GTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGAGAGAGAgtgtaagtgaagcttgcgtaacgcgccctctggagagaga
gi|19 : ctttcaccagagggcgttgtacgctacactcc-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--CA--A
gi|19 : A-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAgtgaagcttgcgtaacgcgccctctggtgagagaa
gi|2 : tctcaccagagggcgttgtacgttttctctccATTCGTCTCA-CCAGAGGGCGTTG-TTACGTTTTC-TCT--CAACA--ACTCCT-----CTGT-AT-CGTCT-AGAAAGTTACCCAAGA-TTTTTGTAA---AACGTT-AGTTTTTT-----TATATTT-ACAG--AA-TTT--ATTGTGTATCATATTTAAAAAGAA-CT--GAAAGACTTATCTTCTTT-C--GCATATTAT-TGGGTA-TT----AAAA-CCG--T-AAA--CTACAAT-AA--ACA-AC-ATTC--AAATTTG-T-GAAATATTTTGCT--TTGTT-C--CA-AAT-AACTTTC-ACTC-G--TGTAGATC-AGTGACTT-AACATTATACG-TC---AC-A-TACGTC-ACT-GC-TAGAT--G-TAAACATGGAAA---CAAACA----ACACAAAAA-CTTTTTAGAA-GTCGGTAG-CTTCA--TG-TG-ACG-AAA-TAGAGAGTTAC---GAAGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-AT-A-CGA--TAA-CAGATGGTGTA-A-G-TGAAA-GCTTGCG-T-AAC-GCG-CCC-T--T--GTGAGAa
gi|20 : --CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAattg
gi|21 : TC-TCTCA-CCAAAGGGCGATG-T-AC-TCTAC-ACT--C--CA--ACA
gi|22 : aaGTT-A-G-TG-AA-GCTTGCG-TCAACCGCG-CCC-T--CTGGTGAaatgtaggtgaa
gi|23 : -TG-AA-GTTTGCA-T-AAC-ATG-CCC-T--CTTATAAGAGAttagattggg
gi|24 : tctcgcataTC-TCTCC-CCAGAGGGCGTTG-T-ATG-CTAC-ACT--C--CA--ACAatg
gi|25 : aaGTA-A-G----AA-GCTTGCG-T-AAC-GCG-CGC-TCCCTGGTGAGAGAa
gi|26 : -TCTCA-CCAGAGGGCGTTG-T-ACG-CTAC-TCC--C--CA--ACAc
gi|3 : aATTC-TCTCA-TCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TTGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CAC-T--CTGGTGAGAGAT
gi|4 : ATTC-TCTCA-CCAGAGGGCGTTGTT-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TT-C--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AATTTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTC-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--A-A-ACAATTC--AAA-TTGTTGGAAATA-TTTGCT--TTGCT-C-TC-CAAT-AACTTTC-ACTTCG--T-TAGATC-AGTGACGT-AACATTATACG-TC---AC-A-TACGTC-ACT-GT-TA-AT--G-TAA--ATGG-AA---CA---A----ACACAAAAA-C-TTGTA-AA-GTCGGTAG-CTTCA--TG-TG-ACGAAAA-T-GAGAG-TAC-GGAAGGAACAAG-AAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GC-TGCGTT-AAC-GCG-CCCTT--CTGGGAAGAG
gi|5 : atcTC-TCCCA-CCAGAGGGCGTTG-T-ATG-CTAC-ACT--C--CA--ACACCT-----CTGTTAT-CATCT-GAA---TTAC--AAAA-ATCTTGTAA---AACGT--AGTTTTTTTTAAAAATGTTTTACAG--AA-TTTTTATCGT-TAT--------------A--T--GAA---CTTCTCTTTT-T-G--GCATATTGT-TAGATA-TT----AAAA-CAA--A-TAC--CTACA--AAG--ACACGC-ATCCAAAAATTT-TC-AAATT-TTTAGATAGTTACCACATCGTCATGAAATTTT-ACATGGGAC-TAGAT--AATTACAT-GT-ATTATGCACTCTATAC-A-TATGT
gi|5 : a--CTA-CTT-T--GCAG-A-TGA--TAA-CATA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAA-ACG-CCC-T--CAGGTGAGAGATacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcagatgataacataggtgtaagtgaagcttgcgtaaaacgccctcaggtgagagatt
gi|6 : atctcccaccagagggcgttgtatgctacactccaacacctctgttatcatctgaattacaaaaatcttgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacATTC-TCTCA-CCAGAGG-CGTTG-T-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AGAA-TTT--GTTA---AACGTTTAGTTTTT------AATATTT-ACAG--AA-TTT--ATCGT-TATCATATT----AAAAAACT--GAAA--TTTATCTTTTT--G--GC-CATTAT-TGGGTA-TTTATTAAAA-CGAATT-AAA--ACACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTT-G-T--TTGCT-C-TCGCA-T-AA-TTTC-ACTTAG--T-TAGATC-AGTGACGTAATCA-TATACG-TCA--AC-A-TAT-TC-ACTGGT-TAGATAAG-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTA---TCCA--TG-T--ACGAAAATTAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCTGAA--CTA-C-T-TT-GCAG-A-Ct
gi|7 : cGTTTAGTTTTTT-----AAAATTT--CAG--AA-TTTTTATCGT-TATCATATT----TAAA--CTATGAAAGACTTATCTATT---G--GCATATTAT-TGGGTA-TT----AAAAACGA--T-AAAA-CTACAATAAA--ACA--C-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCTTC-TCGCAAT-AACTTTCCACTTAG--T-TAGATCGAGTGACGT-ATCATTATACG-TC---AC-A-ATCGTC-ACTG-T-TAGAT--G-TAAACATGG-AC---AA---A----ACACAAAAA-C-T-GTAGAA-GTC-GTAG-CTTCA--TG-TGAACGAAAA-TAGAGAGTTACGGGGAGGAACAAGAAAAAGCTCT-GG-CGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAT
gi|8 : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--CG-CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGAATTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTGTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTT-G--GCA-ATTAT-TGGGTA-TT----AAAA-CGA--TAAAA--CTACAATAAA--ACA-AC-ATTC--AAATTTG----------TTTG--------T-C-TCACAATAAATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---ACAA-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---C
gi|9 : AAAGACTTATCCTTTTT-A--GCATGTTAT-TGGGTAATT----AAAA-CGA--T-AAAAACTACAATAAAACACA-AC-ATTC---AATTTGTT-GAACTATTTTGTT--TTGCT-C-TCGCAAT--ATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATTATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--GATAAACATGG-AA---CA---A----ACAC-AAAA-C-TCATAGAA-GGC-GTAG-CTCCA--TGATG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GATATATAACAATAAAACCTCACACCCTTAGTATCCATAAGTTCTTCGAAATCGTTACCAATCGTCATGAAATTTTATGTGTGAGTAGATGAAATAATTATAGATGAATACACAGTGAGGAAATTTCTGTCATCTTTTTGGTAATTTCGGTGATTCTATGTAC
Alignments
lowQualScore : 11111 111111 11 111 11111111 1 1
lowQualScore : 2 2 2 2 9 1 33 33 55 33 22222 5 5 888 66 5 888 444444 4 55 4 0 4 9999 8 66 2 444 55 4 4 8888 4 55 4 33 55 4 4 55 444 1 11 7777 8 4 3 8 2 4 55 4 4 8 4 111 4 4 4 2 5 8888 5 888 33333333 5 5 6 5 1 5 77 5 5 5 66 6 55 4 4 4 4 4 66 4 0 2 2 2 2 2 4 2 2 2 2 33
lowQualScore : . . . . . . .. .. .. .. ..... . . ... .. . ... ...... . .. . . . .... . .. . ... .. . . .... . .. . .. .. . . .. ... . .. .... . . . . . . .. . . . . ... . . . . . .... . ... ........ . . . . . . .. . . . .. . .. . . . . . .. . . . . . . . . . . . . ..
lowQualScore : 5 5 5 5 4 0 22 44 99 77 55555 0 0 888 99 0 888 888888 0 55 0 8 0 4444 9 11 3 666 55 0 0 5555 0 55 0 55 55 0 0 55 555 6 44 0000 0 0 2 0 3 0 55 0 0 0 0 000 0 0 4 5 0 1111 0 888 11111111 7 7 3 7 4 7 99 7 7 7 44 7 55 0 0 0 0 0 11 0 9 5 5 4 4 4 7 4 4 4 4 22
consensus : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
Reference ( family-3175 ) : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
gi|1 : TC-TCTCA-CCAGAGTGCTGTG-T--CGTTTTCCTCTTCC--CATTACACCTTTTTTCTGTTATTCGTCTTAAA---TTAC--AAGA-TTTTTGTTACATAGCGTTTAGTTTTT------AATATAT-ACAGTTAT-TTTTTATCGT-TATCATCTA----AGGAATCT--GAAAGACTTATCTTTTTT-GTGGTATATTATGTGGGTA-TT--------------T-AAA--C---GATAAA-----------CT--AGATTT------------TCGCG--TGTCT-C-TCG-AAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGTGATCATT-TGCG-TC---AC-AATACGTCGACTGGTGTAGAT----TAAACATGG-AAGATCA---ATTCGACAAAAAAATC-TTGTAGATTGTC-GTAGTCTTCAACTG-TG-ACGAAAT-AAGAGAGTTAC-TGGAGTAACAAGAAAGAGCTCTGGGCCGAGATCTA-CTT-TT-GCAG-AGCGGATTAA-CCGA--GTGTA-ATGTTG-AATGCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGA
gi|10 : GTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CC--GAAAGACTTATCTTTTTTTG--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAAA-CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGTT--TTGCT-T-TCGTAAT-AATTTTC-ACTTAG--T-TAGTTC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-
gi|12 : --CTATCTT-TTCGCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTAG
gi|13 : aactagacagaaatactcatactttagtagactccgacttgaaagaaacgatgacatatttatgagcgggtgacaaaaaacaaatgATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--TA--ACACCT-----TCGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTTA----AATATTC-ACAG--AA-TTTTTATCGT-TATCATg
gi|14 : cTC-TCTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--CA--ACA
gi|14 : AA-CAG----TGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGATgtgtaagtgaagcttgcgtaacgcgccctctggtgagagat
gi|15 : tctctcaccagagggcgttgtacgctacactccAA--CTA-CTTGTT-GCAGGA-C-A--TAAACAGA-GGTGTACA-G-TG-AA-GCTTGCGGT-AAC-GCG-CCT-G--CTGGTGAGAGAT
gi|16 : gccagaC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--CA--ACAt
gi|16 : A-AGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGCGAGAagtgtaagtgaagcttgcgtaacgcgccctctggcgaga
gi|17 : ctttcaccagagggcgttgtacgctacactccaac-TCTCAACCAGCAGGCGTTG-T-ACGTTTTC-TCT--C--CA--ACA
gi|17 : -A-G-TG-AA-GCTTGCG-T-AAC-GCGACCC-T--CTGGTGAGAGATgtgaagcttgcgtaacgcgaccctctggtgagagat
gi|18 : tctcaaccagcaggcgttgtacgttttctctccaacC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--C
gi|18 : GTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGAGAGAGAgtgtaagtgaagcttgcgtaacgcgccctctggagagaga
gi|19 : ctttcaccagagggcgttgtacgctacactcc-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--CA--A
gi|19 : A-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAgtgaagcttgcgtaacgcgccctctggtgagagaa
gi|2 : tctcaccagagggcgttgtacgttttctctccATTCGTCTCA-CCAGAGGGCGTTG-TTACGTTTTC-TCT--CAACA--ACTCCT-----CTGT-AT-CGTCT-AGAAAGTTACCCAAGA-TTTTTGTAA---AACGTT-AGTTTTTT-----TATATTT-ACAG--AA-TTT--ATTGTGTATCATATTTAAAAAGAA-CT--GAAAGACTTATCTTCTTT-C--GCATATTAT-TGGGTA-TT----AAAA-CCG--T-AAA--CTACAAT-AA--ACA-AC-ATTC--AAATTTG-T-GAAATATTTTGCT--TTGTT-C--CA-AAT-AACTTTC-ACTC-G--TGTAGATC-AGTGACTT-AACATTATACG-TC---AC-A-TACGTC-ACT-GC-TAGAT--G-TAAACATGGAAA---CAAACA----ACACAAAAA-CTTTTTAGAA-GTCGGTAG-CTTCA--TG-TG-ACG-AAA-TAGAGAGTTAC---GAAGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-AT-A-CGA--TAA-CAGATGGTGTA-A-G-TGAAA-GCTTGCG-T-AAC-GCG-CCC-T--T--GTGAGAa
gi|20 : --CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAattg
gi|21 : TC-TCTCA-CCAAAGGGCGATG-T-AC-TCTAC-ACT--C--CA--ACA
gi|22 : aaGTT-A-G-TG-AA-GCTTGCG-TCAACCGCG-CCC-T--CTGGTGAaatgtaggtgaa
gi|23 : -TG-AA-GTTTGCA-T-AAC-ATG-CCC-T--CTTATAAGAGAttagattggg
gi|24 : tctcgcataTC-TCTCC-CCAGAGGGCGTTG-T-ATG-CTAC-ACT--C--CA--ACAatg
gi|25 : aaGTA-A-G----AA-GCTTGCG-T-AAC-GCG-CGC-TCCCTGGTGAGAGAa
gi|26 : -TCTCA-CCAGAGGGCGTTG-T-ACG-CTAC-TCC--C--CA--ACAc
gi|3 : aATTC-TCTCA-TCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TTGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CAC-T--CTGGTGAGAGAT
gi|4 : ATTC-TCTCA-CCAGAGGGCGTTGTT-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TT-C--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AATTTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTC-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--A-A-ACAATTC--AAA-TTGTTGGAAATA-TTTGCT--TTGCT-C-TC-CAAT-AACTTTC-ACTTCG--T-TAGATC-AGTGACGT-AACATTATACG-TC---AC-A-TACGTC-ACT-GT-TA-AT--G-TAA--ATGG-AA---CA---A----ACACAAAAA-C-TTGTA-AA-GTCGGTAG-CTTCA--TG-TG-ACGAAAA-T-GAGAG-TAC-GGAAGGAACAAG-AAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GC-TGCGTT-AAC-GCG-CCCTT--CTGGGAAGAG
gi|5 : atcTC-TCCCA-CCAGAGGGCGTTG-T-ATG-CTAC-ACT--C--CA--ACACCT-----CTGTTAT-CATCT-GAA---TTAC--AAAA-ATCTTGTAA---AACGT--AGTTTTTTTTAAAAATGTTTTACAG--AA-TTTTTATCGT-TAT--------------A--T--GAA---CTTCTCTTTT-T-G--GCATATTGT-TAGATA-TT----AAAA-CAA--A-TAC--CTACA--AAG--ACACGC-ATCCAAAAATTT-TC-AAATT-TTTAGATAGTTACCACATCGTCATGAAATTTT-ACATGGGAC-TAGAT--AATTACAT-GT-ATTATGCACTCTATAC-A-TATGT
gi|5 : a--CTA-CTT-T--GCAG-A-TGA--TAA-CATA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAA-ACG-CCC-T--CAGGTGAGAGATacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcagatgataacataggtgtaagtgaagcttgcgtaaaacgccctcaggtgagagatt
gi|6 : atctcccaccagagggcgttgtatgctacactccaacacctctgttatcatctgaattacaaaaatcttgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacATTC-TCTCA-CCAGAGG-CGTTG-T-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AGAA-TTT--GTTA---AACGTTTAGTTTTT------AATATTT-ACAG--AA-TTT--ATCGT-TATCATATT----AAAAAACT--GAAA--TTTATCTTTTT--G--GC-CATTAT-TGGGTA-TTTATTAAAA-CGAATT-AAA--ACACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTT-G-T--TTGCT-C-TCGCA-T-AA-TTTC-ACTTAG--T-TAGATC-AGTGACGTAATCA-TATACG-TCA--AC-A-TAT-TC-ACTGGT-TAGATAAG-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTA---TCCA--TG-T--ACGAAAATTAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCTGAA--CTA-C-T-TT-GCAG-A-Ct
gi|7 : cGTTTAGTTTTTT-----AAAATTT--CAG--AA-TTTTTATCGT-TATCATATT----TAAA--CTATGAAAGACTTATCTATT---G--GCATATTAT-TGGGTA-TT----AAAAACGA--T-AAAA-CTACAATAAA--ACA--C-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCTTC-TCGCAAT-AACTTTCCACTTAG--T-TAGATCGAGTGACGT-ATCATTATACG-TC---AC-A-ATCGTC-ACTG-T-TAGAT--G-TAAACATGG-AC---AA---A----ACACAAAAA-C-T-GTAGAA-GTC-GTAG-CTTCA--TG-TGAACGAAAA-TAGAGAGTTACGGGGAGGAACAAGAAAAAGCTCT-GG-CGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAT
gi|8 : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--CG-CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGAATTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTGTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTT-G--GCA-ATTAT-TGGGTA-TT----AAAA-CGA--TAAAA--CTACAATAAA--ACA-AC-ATTC--AAATTTG----------TTTG--------T-C-TCACAATAAATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---ACAA-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---C
gi|9 : AAAGACTTATCCTTTTT-A--GCATGTTAT-TGGGTAATT----AAAA-CGA--T-AAAAACTACAATAAAACACA-AC-ATTC---AATTTGTT-GAACTATTTTGTT--TTGCT-C-TCGCAAT--ATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATTATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--GATAAACATGG-AA---CA---A----ACAC-AAAA-C-TCATAGAA-GGC-GTAG-CTCCA--TGATG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGA
blockSeqs : G A T T T T T . AA . . . . AAG CC A . TTTAAA T . T G TAAA A AT T TTT . . A TATT A AT A AA AC C A AA TTG C AT ATAG A A T G T C GA G G A C TAT A . . G . AAG A . AACA . T T . G . . A A T GG . . T G C G . . A T C . . A . G C C A T CC
blockSeqs : . . . . T A A . G . . . . . . . . TA . . . . . . . T TT . . . . . . . A . . . . TT A AT TT T . C A C . . . . . . A . . . G . GA . . A . . T . G . . . . . G . . . . . . . . . T . . . . . T . . . . .
blockSeqs : . . . . T A A . . . . . . . . . . T . . . . . . . T TT . . . . . . . A . . . . TT C AT CT . . C . C . . . . . . . . . . G . G . . A . . T . . . . . . . G . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . T T T . . . . . . . . . . T . . . . . . . T TC . . . . . . . . . . . . TC A AT CT . . T . C . . . . . . . . . . G . G . . A . . C . . . . . . . G . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T A A . . . . . . . . . . T . . . . . . . T TT . . . . . . . . . . . . TT T AT CT . . C . A . . . . . . . . . . G . G . . A . . C . . . . . . . G . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T T T . . . . . . . . . . T . . . . . . . T TT . . . . . . . . . . . . TT C AT CT . . C . C . . . . . . . . . . . . G . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T T T . . . . . . . . . . T . . . . . . . C T . . . . . . . . . . . . TT C A TT . . C . T . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T A A . . . T . . . . . . . . T . . . . . . . . . . . . T C T T . . C . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T A A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A T . . . . . . . . . . . . . . .
blockSeqs : . . . . . T T . . . . . . . . . . . . . .
blockSeqs : . . . . . T T . . . . . . . . . . . . . .
blockSeqs : . . . . . A A . . . . . . . . . . . . . .
blockSeqs : . . . . . T T . . . . . . . . . . . . . .
blockSeqs : . . . . . T T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : T* ** ** ***** *** T***** ** ** TT* AT G*** *** A******* ** ** **
originalCons : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
finalCons : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNCT-CT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGATG---TAAACATGG-AA---CAA-------ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GATATATAACAATAAAACCTCACACCCTTAGTATCCATAAGTTCTTCGAAATCGTTACCAATCGTCATGAAATTTTATGTGTGAGTAGATGAAATAATTATAGATGAATACACAGTGAGGAAATTTCTGTCATCTTTTTGGTAATTTCGGTGATTCTATGTAC
Alignments
lowQualScore : 11111 111111 11 111 11111111 1 1
lowQualScore : 2 2 2 2 9 1 33 33 55 33 22222 5 5 888 66 5 888 444444 4 55 4 0 4 9999 8 66 2 444 55 4 4 8888 4 55 4 33 55 4 4 55 444 1 11 7777 8 4 3 8 2 4 55 4 4 8 4 111 4 4 4 2 5 8888 5 888 33333333 5 5 6 5 1 5 77 5 5 5 66 6 55 4 4 4 4 4 66 4 0 2 2 2 2 2 4 2 2 2 2 33
lowQualScore : . . . . . . .. .. .. .. ..... . . ... .. . ... ...... . .. . . . .... . .. . ... .. . . .... . .. . .. .. . . .. ... . .. .... . . . . . . .. . . . . ... . . . . . .... . ... ........ . . . . . . .. . . . .. . .. . . . . . .. . . . . . . . . . . . . ..
lowQualScore : 5 5 5 5 4 0 22 44 99 77 55555 0 0 888 99 0 888 888888 0 55 0 8 0 4444 9 11 3 666 55 0 0 5555 0 55 0 55 55 0 0 55 555 6 44 0000 0 0 2 0 3 0 55 0 0 0 0 000 0 0 4 5 0 1111 0 888 11111111 7 7 3 7 4 7 99 7 7 7 44 7 55 0 0 0 0 0 11 0 9 5 5 4 4 4 7 4 4 4 4 22
consensus : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
Reference ( family-3175 ) : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTCTNC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAT
gi|1 : TC-TCTCA-CCAGAGTGCTGTG-T--CGTTTTCCTCTTCC--CATTACACCTTTTTTCTGTTATTCGTCTTAAA---TTAC--AAGA-TTTTTGTTACATAGCGTTTAGTTTTT------AATATAT-ACAGTTAT-TTTTTATCGT-TATCATCTA----AGGAATCT--GAAAGACTTATCTTTTTT-GTGGTATATTATGTGGGTA-TT--------------T-AAA--C---GATAAA-----------CT--AGATTT------------TCGCG--TGTCT-C-TCG-AAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGTGATCATT-TGCG-TC---AC-AATACGTCGACTGGTGTAGAT----TAAACATGG-AAGATCA---ATTCGACAAAAAAATC-TTGTAGATTGTC-GTAGTCTTCAACTG-TG-ACGAAAT-AAGAGAGTTAC-TGGAGTAACAAGAAAGAGCTCTGGGCCGAGATCTA-CTT-TT-GCAG-AGCGGATTAA-CCGA--GTGTA-ATGTTG-AATGCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGA
gi|10 : GTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CC--GAAAGACTTATCTTTTTTTG--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAAA-CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGTT--TTGCT-T-TCGTAAT-AATTTTC-ACTTAG--T-TAGTTC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-
gi|12 : --CTATCTT-TTCGCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTAG
gi|13 : aactagacagaaatactcatactttagtagactccgacttgaaagaaacgatgacatatttatgagcgggtgacaaaaaacaaatgATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--TA--ACACCT-----TCGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTTA----AATATTC-ACAG--AA-TTTTTATCGT-TATCATg
gi|14 : cTC-TCTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--CA--ACA
gi|14 : AA-CAG----TGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGATgtgtaagtgaagcttgcgtaacgcgccctctggtgagagat
gi|15 : tctctcaccagagggcgttgtacgctacactccAA--CTA-CTTGTT-GCAGGA-C-A--TAAACAGA-GGTGTACA-G-TG-AA-GCTTGCGGT-AAC-GCG-CCT-G--CTGGTGAGAGAT
gi|16 : gccagaC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--CA--ACAt
gi|16 : A-AGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGCGAGAagtgtaagtgaagcttgcgtaacgcgccctctggcgaga
gi|17 : ctttcaccagagggcgttgtacgctacactccaac-TCTCAACCAGCAGGCGTTG-T-ACGTTTTC-TCT--C--CA--ACA
gi|17 : -A-G-TG-AA-GCTTGCG-T-AAC-GCGACCC-T--CTGGTGAGAGATgtgaagcttgcgtaacgcgaccctctggtgagagat
gi|18 : tctcaaccagcaggcgttgtacgttttctctccaacC-TTTCA-CCAGAGGGCGTTG-T-ACG-CTAC-ACT--C--C
gi|18 : GTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGAGAGAGAgtgtaagtgaagcttgcgtaacgcgccctctggagagaga
gi|19 : ctttcaccagagggcgttgtacgctacactcc-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--CA--A
gi|19 : A-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CCC-T--CTGGTGAGAGAgtgaagcttgcgtaacgcgccctctggtgagagaa
gi|2 : tctcaccagagggcgttgtacgttttctctccATTCGTCTCA-CCAGAGGGCGTTG-TTACGTTTTC-TCT--CAACA--ACTCCT-----CTGT-AT-CGTCT-AGAAAGTTACCCAAGA-TTTTTGTAA---AACGTT-AGTTTTTT-----TATATTT-ACAG--AA-TTT--ATTGTGTATCATATTTAAAAAGAA-CT--GAAAGACTTATCTTCTTT-C--GCATATTAT-TGGGTA-TT----AAAA-CCG--T-AAA--CTACAAT-AA--ACA-AC-ATTC--AAATTTG-T-GAAATATTTTGCT--TTGTT-C--CA-AAT-AACTTTC-ACTC-G--TGTAGATC-AGTGACTT-AACATTATACG-TC---AC-A-TACGTC-ACT-GC-TAGAT--G-TAAACATGGAAA---CAAACA----ACACAAAAA-CTTTTTAGAA-GTCGGTAG-CTTCA--TG-TG-ACG-AAA-TAGAGAGTTAC---GAAGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-G-AT-A-CGA--TAA-CAGATGGTGTA-A-G-TGAAA-GCTTGCG-T-AAC-GCG-CCC-T--T--GTGAGAa
gi|20 : --CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAattg
gi|21 : TC-TCTCA-CCAAAGGGCGATG-T-AC-TCTAC-ACT--C--CA--ACA
gi|22 : aaGTT-A-G-TG-AA-GCTTGCG-TCAACCGCG-CCC-T--CTGGTGAaatgtaggtgaa
gi|23 : -TG-AA-GTTTGCA-T-AAC-ATG-CCC-T--CTTATAAGAGAttagattggg
gi|24 : tctcgcataTC-TCTCC-CCAGAGGGCGTTG-T-ATG-CTAC-ACT--C--CA--ACAatg
gi|25 : aaGTA-A-G----AA-GCTTGCG-T-AAC-GCG-CGC-TCCCTGGTGAGAGAa
gi|26 : -TCTCA-CCAGAGGGCGTTG-T-ACG-CTAC-TCC--C--CA--ACAc
gi|3 : aATTC-TCTCA-TCAGAGGGCGTTG-T-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATCTTTTTT-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCT-C-TCGCAAT-AACTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---CA---A----ACACAAAAA-C-TTGTAGAA-GTC-GTAG-CTTCA--TG-TG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAC-GCG-CAC-T--CTGGTGAGAGAT
gi|4 : ATTC-TCTCA-CCAGAGGGCGTTGTT-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TT-C--AAGA-TTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AATTTTTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTC-G--GCATATTAT-TGGGTA-TT----AAAA-CGA--T-AAA--CTACAATAAA--A-A-ACAATTC--AAA-TTGTTGGAAATA-TTTGCT--TTGCT-C-TC-CAAT-AACTTTC-ACTTCG--T-TAGATC-AGTGACGT-AACATTATACG-TC---AC-A-TACGTC-ACT-GT-TA-AT--G-TAA--ATGG-AA---CA---A----ACACAAAAA-C-TTGTA-AA-GTCGGTAG-CTTCA--TG-TG-ACGAAAA-T-GAGAG-TAC-GGAAGGAACAAG-AAAAGCTCT-GGCCGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGA-GGTGTA-A-G-TG-AA-GC-TGCGTT-AAC-GCG-CCCTT--CTGGGAAGAG
gi|5 : atcTC-TCCCA-CCAGAGGGCGTTG-T-ATG-CTAC-ACT--C--CA--ACACCT-----CTGTTAT-CATCT-GAA---TTAC--AAAA-ATCTTGTAA---AACGT--AGTTTTTTTTAAAAATGTTTTACAG--AA-TTTTTATCGT-TAT--------------A--T--GAA---CTTCTCTTTT-T-G--GCATATTGT-TAGATA-TT----AAAA-CAA--A-TAC--CTACA--AAG--ACACGC-ATCCAAAAATTT-TC-AAATT-TTTAGATAGTTACCACATCGTCATGAAATTTT-ACATGGGAC-TAGAT--AATTACAT-GT-ATTATGCACTCTATAC-A-TATGT
gi|5 : a--CTA-CTT-T--GCAG-A-TGA--TAA-CATA-GGTGTA-A-G-TG-AA-GCTTGCG-T-AAA-ACG-CCC-T--CAGGTGAGAGATacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacctactttgcagatgataacataggtgtaagtgaagcttgcgtaaaacgccctcaggtgagagatt
gi|6 : atctcccaccagagggcgttgtatgctacactccaacacctctgttatcatctgaattacaaaaatcttgtaaaacgtagttttttttaaaaatgttttacagaatttttatcgttatatgaacttctctttttggcatattgttagatattaaaacaaatacctacaaagacacgcatccaaaaattttcaaatttttagatagttaccacatcgtcatgaaattttacatgggactagataattacatgtattatgcactctatacatatgtacatgcctacagggaagtaatttcagtcaatttatcggtacttttcggtcacttttacaagcagtaattttgatgattctatgtaccacacATTC-TCTCA-CCAGAGG-CGTTG-T-ACGTTTTC-TCT--C--CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AGAA-TTT--GTTA---AACGTTTAGTTTTT------AATATTT-ACAG--AA-TTT--ATCGT-TATCATATT----AAAAAACT--GAAA--TTTATCTTTTT--G--GC-CATTAT-TGGGTA-TTTATTAAAA-CGAATT-AAA--ACACAATAAA--ACA-AC-ATTC--AAATTTGTT-GAACTATTT-G-T--TTGCT-C-TCGCA-T-AA-TTTC-ACTTAG--T-TAGATC-AGTGACGTAATCA-TATACG-TCA--AC-A-TAT-TC-ACTGGT-TAGATAAG-TAAACATGG-AA---CA---A----ACACAAAAA-C-TCGTAGAA-GTC-GTA---TCCA--TG-T--ACGAAAATTAGAGAGTTAC-GGGAGGAACAAGAAAAAGCTCT-GGCTGAA--CTA-C-T-TT-GCAG-A-Ct
gi|7 : cGTTTAGTTTTTT-----AAAATTT--CAG--AA-TTTTTATCGT-TATCATATT----TAAA--CTATGAAAGACTTATCTATT---G--GCATATTAT-TGGGTA-TT----AAAAACGA--T-AAAA-CTACAATAAA--ACA--C-ATTC--AAATTTGTT-GAACTATTTTGCT--TTGCTTC-TCGCAAT-AACTTTCCACTTAG--T-TAGATCGAGTGACGT-ATCATTATACG-TC---AC-A-ATCGTC-ACTG-T-TAGAT--G-TAAACATGG-AC---AA---A----ACACAAAAA-C-T-GTAGAA-GTC-GTAG-CTTCA--TG-TGAACGAAAA-TAGAGAGTTACGGGGAGGAACAAGAAAAAGCTCT-GG-CGAA--CTA-CTT-TT-GCAG-A-CGA--TAA-CAGATGGTGTA-A-G-TG-AA-GC-TGCG-T-AAC-GCG--CC-T--CTGGTGAGAGAT
gi|8 : ATTC-TCTCA-CCAGAGGGCGTTG-T-ACGTTTTC-TCT--CG-CA--ACACCT-----CTGTTAT-CGTCT-AAA---TTAC--AAGAATTTTTGTAA---AACGTTTAGTTTTTT-----AATATTT-ACAG--AA-TTGTTATCGT-TATCATATT----AAAAA-CT--GAAAGACTTATC-TTTTT-G--GCA-ATTAT-TGGGTA-TT----AAAA-CGA--TAAAA--CTACAATAAA--ACA-AC-ATTC--AAATTTG----------TTTG--------T-C-TCACAATAAATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATCATTATACG-TC---ACAA-TACGTC-ACTGGT-TAGAT--G-TAAACATGG-AA---C
gi|9 : AAAGACTTATCCTTTTT-A--GCATGTTAT-TGGGTAATT----AAAA-CGA--T-AAAAACTACAATAAAACACA-AC-ATTC---AATTTGTT-GAACTATTTTGTT--TTGCT-C-TCGCAAT--ATTTTC-ACTTAG--T-TAGATC-AGTGACGT-ATTATTATACG-TC---AC-A-TACGTC-ACTGGT-TAGAT--GATAAACATGG-AA---CA---A----ACAC-AAAA-C-TCATAGAA-GGC-GTAG-CTCCA--TGATG-ACGAAAA-TAGAGAGTTAC-GGGAGGAACAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GATATATAACAATAAAACCTCACACCCTTAGTATCCATAAGTTCTTCGAAATCGTTACCAATCGTCATGAAATTTTATGTGTGAGTAGATGAAATAATTATAGATGAATACACAGTGAGGAAATTTCTGTCATCTTTTTGGTAATTTCGGTGATTCTATGTAC