lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222 1 1 4444 11 1 999999999999999999999999 33333 1 1 1 1 555555555555555 1111 1111 1111 111111111 11 33333333333333 11 11 1111111 1 11
lowQualScore : 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 66666 0 0 3 5555 2 33 5 3 777777777777777777777777 88888 0 0 0 0 0 8 88 111111111111111 4444 66 0000 5 777 5 2 5 6 1 77 1 2222 5 666666666 33 999 4 4 22222222222222 4 55 33 55 55 22 4 55 8888 4444444 4 1 5 8888 33 77 5
lowQualScore : . ..................................................................................................................................................................................................................................................................................................................... ..... . . . .... . .. . . ........................ ..... . . . . . . .. ............... .... .. .... . ... . . . . . .. . .... . ......... .. ... . . .............. . .. .. .. .. .. . .. .... ....... . . . .... .. .. .
lowQualScore : 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 0 0 2 0000 5 88 5 2 999999999999999999999999 22222 2 0 0 0 0 8 88 333333333333333 2222 99 4444 0 888 7 3 7 9 4 99 7 1111 7 000000000 66 444 4 4 44444444444444 0 55 99 55 55 44 0 00 5555 2222222 4 3 0 5555 44 99 7
consensus : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTTAT-------GAATCGTGCGGATTTGCCGGTGACAGCGAGA-CCTACGGACTTTT-AAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCNCGACACGCTG-TTGT---T-TA--AA-GCTGTGGG--AGCTC--G--AAAT-CAC-AACCTTT---CCG--TTTACAAAAGGAACGCG---NCAA-GAC---GAT-TAC-NACCCTTCATGT--ACGTAAC-C-TTTAA-C-ACGCGGCC-ACGTTG--GTT-------TTT----TTGA--GTG-AC-CT-TCA-CCTGT-GCATCCCGAT-CCCGAG--TTCTAAAATAA----T-ANG--AT---CACGTCC--GATA--TTTTCGA-TCC-GTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCA-GCAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GG-CCCTGCCGACAGGACCGATA
Reference ( gi|2 ) : TTTTTCTTTTTCCTTTTAAACCACTGAATTACTAGGTCGTTTGTTTTACG---TCTTTGG----GCA---GGAATTCA-----CCTGCTGTGGGTAAAAGAATACAGAC--CAA----GTGAA-GCTTTTTGTGGTTCTTATTATTAATAAAT-GTGTG--CTTGC--GTGATA-CGAGAACCTCCG--CTTTTTAA---TCATA--CC--TA-AGAAACCTTGA-TCACTTA-TCTAAACTA--TTGCTGTGCTTTTCG-----TACAA-TATATGT-GCTTGAC-CGCT--TTGT---T-TA--AA-GCTG------AGCTC--A--AAAT-CAC-AACCTT----CCG--TTTACAAAAGGAACGC----TCAAAAAC--TGATCTAC-CACTCTTCAT----ACGTAAC-C-TTTAA-C-ATGCGGCC-ATGTTGG-GTT-------TTT----TTGA--GTA-AC-CT-TCA-CCTGT-GCATCCCAAT-CCAGAG--TTCTAAAATAA----T-ACG--AT---CACGTCC--GATA--TTTTCGA-TCT-GTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCA-TCAA-G--TTG----T-C-----GGT-CCAGGGCATTT----TTA-ATC--GG-CCCTGCCGACAGGACCGATA
gi|1 : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTTAT-------GAATCGTGCGGATTTGCCGGTGACAGCGAGA-CCTACGGACTTTT-AAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCACAAG-CGCTGGTTATGAGT-TA--GA-AATG------AAACG--AGGAGAT-CAG-AAACTCAAAACCGGTTTTGCAAAAGGTACGTGGTACCAACGACAAGGATATTA-TACCTATCA-------GTGAC-C-TTTTGTC-ACGCCGCC--CATTA---TT-------TTTCTACTTTA--GTTTAC-CAATCA-CCTGTTGCATCCGGATTCCGAAG--TTCTAAAACGACGTTT-ACGCGGTTCGCATGTCCC-GATA--TTTTTAA-TTT-GATAATT----C--A---TTA-TTTGG--ACCGACG--TTT--TTTA-GAAA-G--TTG----T-CAATAAGGTCCCAGTGGATTT----TT
gi|10 : tagcaataacacatcagttttatcgatagcacaagctgcctagccttagaacttattcaaataaaagaattcaatttattataaacgattttgcatcatttttattcaaggccgttacaatagttaaagacaatgttcttctgactcttgtgttatctggcaagataaacacatctagactgagattaccgtccgaatattcatctgaactcacaaatcttcgagttttaattgtaactcaactgcaaaatttctgattcataaattattctgggtgaatattcacaaccatcacatgaatcagccactcgggttttgaatacttatcgctaaggtggagcttgtgctatcagattaaaactgaatgtgttattgctgacttgtcattagagctcttgctctatttaagttaataaacaaaatacttcgtaagatatgtaccattacgcggttgtccctatagatgA-TATA-GT--CTGGAC-AGCTA-TTGT---T-TA--AAAGCTGG-----AGCTC--G--AAATTCAC-A-CCTT----C-G--TTTACAAAAGGAACGCG---TGCAAAAC--TGATCTACAGACTCTTttatcagaacacggacagttttcgacaaccaattgtgactaatctttgttaaaattaacgtttagagggtccacttgcgcgaagtcgcattcagacgctgttttggctagatagggattttaggaaaataattgattcagaaccggaaactgactgaacacagaaaatcgcggaaatagtcggtagatgaagtcgctgctaaaatgcggatatatgcggataagtagatcgctaaaattatgatcgcgaataattatggtccagcttgcagaatgataatatccacttaattttc
gi|3 : ttcgatcaggTGACACGCT--TTGT---TAGA--AA-GCTGTGGGGAAGCTCGAA--AAAT-CAC-GACCTTTT--CCG--TT-ACAAAAGGAACGC--------------------AC-CAACTTTCATGT--ATATAACTC-TTTAA-CCAACCGGCCTATGT----GTT-------TTA----TGAA--GTG--C-CT-TCAACCTGT-GCATTCCAAT-CACGAGTTTTTTAAAATAA----T-AGA--ATC--CACGTTCCGGATATTTTTTTGA-TCC-GTTATTCTCGGC--G---GTATTTTGG--A-AGATGTTTTT--TCCA-GCAA-GTTTTG----TCC-----GGT-CATGGGGACTT----TT
gi|13 : atcGACACGCT--TTGG---T-TAGAAA-GCTGTGGA--AGCTC--G--AAAT-CACGAACCTTT---CCG--TT-ACAAA-GGAACGC----ACAAtta
gi|15 : ACTCTTCATGTATACGTAAC-C-TTTAA-C-ACGCGGCT-ATG-TG----T-------TTT----TTGA--GTG-AC-CT-TCA-CCT
gi|6 : aT----ACGTAAC-CTTTTAA-C-ACGTGGCC-ATGTT-T-TTT-------TTT----TTGA--GTG-AC-CT-TCA-CCGGT-GCATCCTAAT-CCCGAG--TTCTGAAATAA----T-ACG--AT---CCCGCCC--GATA--TTTTCGA-TCT-GTTC-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCA-TCAA-G--TTG----T-T-----GGT-CCAGGGGATTT----TTA-ATC--GG-CCCTGCCGACAGGACCGATA
gi|5 : GCT-ACGTTGGTGTTGCTCTTGTTT----TTAATGATA-AT-CT---G-TTTGT-GCATCCTGAC-CCCACA--CTCTAAAATCT----T-AGG--AA---CTTGTCG--GACA---TTCCAA-TCG-TTTAT------T--T---GTA-CATGT--ACCATCG--TTT--TCTA-GTAA-G--TTATCACT-C-----AGT-CCAGAGAATTTAATCTT--ATT--GG-CTTTGACAATATGACCAACAgttttctacaa
gi|8 : -------TTT----ATGG--ATA-A-----TTA-CCTG--GCATGCC----CTAG-T--TTCTAAAATAA----T-ATG--AT---CAC-TCC--GATA--TTTTTAA-TCG-G----------C--C---AT--TTGGG--ACCACTC--TTT--TCTA-GCAA-G--TTA----T-------GGT-CCAGGG-ATCT----TTT-ATC--GGTTTCTGCCGACAGGACgttttcaacaacattattgcaaatcttgc
gi|7 : atgtaaatgcgtaaGA--GAA-ACACT-TTA-A-TGT-GCATCCCAAT-CACGAG--TT-TAAAATAA----T-AAT--AC---CACGTCT--GAT---TTTTTGA-CTC-CTTA-------CCGC---GTA-TTTGGAAAACGATG--TTTTGTCCAGCCAA-GT-TTG----T-C-----GGT-CATGGGGATTT----TT--ATCTTGG-CCga
gi|9 : tgagttttggtatataGA--GAA-ACACT-TTA-A-TGT-GCATCCCAAG-TCAGAG--TTTTAAAATCA----TGAAG--AT---AACGTCT---AT---TTTTTGACTCTCGTTA-------C--CGGGGTA-TTGGA--AACGATG--TTT--TTCC-CCAA-GTTTTG----T-C-----GGT-CATGGGGATTT----TTA-
gi|4 : gttggtatataTA--TTTTCGA-TCT-GTTA-------C--A---GTA-TCTGG--ACCGAAG--TTT--TCCA-GCAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-AT------------CGACAGGACCGATA
gi|16 : --TTTTCGA-TCT-TTTA-------C--C---GTA-TTTGG--ACCAATG--GTT--TCCA-TCAA-A--TTG----T-gttttctacaactctgactccctaaaactaataccagagtcgatgacggaagtaggataaaaagcttacggtcgggggttataaattagggtagttcgggtaaccggaattttggcctaaaaattcagattgctgaaacttaaaaattgttgtttttcagaagtttaaatgtctgccgattttga
gi|11 : A-TTTGG--ACCG-----TTT--TCCA-GCAACG--TTG----T-T-----GGT-CCGGAGGATTT----TTGTATC--GG-CCCTGCCGAC
gi|12 : cGCATTT----TAA-ATC--GG-TCCTGCCAGCATGACCcagtactctgattcatgaatactga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTACTGGCCTTGGCAATAGGACTGACAGTTTTCGACATCTCTGTTTAAAATTTCAAATCTTGCA
Unaligned ( gi|17 ): CTGGTTTAAAAAAAAAAAATCAATAAAAGTA
Alignments
lowQualScore : 4444 2 55555 222 2222222222 22222 11 2222 1 2 6666666 1 11 11 1 2 11 222222 11 11 1 1 1 11 22222 1 1 33 111 11 4444444444 11 222 88888888888888888888888888888 111111 11 33333333333 1111 1111 111 22222222222222 11 1111111 11
lowQualScore : 2 2222 2 0 00000 2 111 2 4444444444 55555 2 2 88 4444 2 5 66 0 5555555 5 88 77 5 0 3 88 222222 88 88 5 5 5 4 4 77 66 66666 3 5 2 5 1 3 11 444 8 11 8 4444444444 8 99 8 8 0 333 0 0 0 33333333333333333333333333333 999999 8 8 8 11 6 0 11111111111 6 4444 6 5 5 5 0 5 66 55 0000 5 777 333 5 66 777 4 77 77777777777777 3 55 1 55 55 3 3 33 7777 1111111 4 0 8888 33 77 5
lowQualScore : . .... . . ..... . ... . .......... ..... . . .. .... . . .. . ....... . .. .. . . . .. ...... .. .. . . . . . .. .. ..... . . . . . . .. ... . .. . .......... . .. . . . ... . . . ............................. ...... . . . .. . . ........... . .... . . . . . . .. .. .... . ... ... . .. ... . .. .............. . .. . .. .. . . .. .... ....... . . .... .. .. .
lowQualScore : 5 5555 5 0 00000 5 000 5 0000000000 55555 5 5 55 0000 5 5 55 0 0000000 0 00 55 0 0 0 00 555555 00 00 0 5 5 0 0 55 55 00000 0 0 5 5 0 8 22 000 0 00 0 8888888888 0 00 0 0 8 666 8 8 8 77777777777777777777777777777 444444 0 0 0 00 7 7 00000000000 7 2222 7 7 7 0 2 0 99 22 6666 0 999 888 0 99 444 0 00 22222222222222 6 00 8 00 00 6 6 66 7777 8888888 0 3 5555 44 99 7
consensus : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AA-GCTG---CG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-A-CCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
Reference ( family-3136 ) : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTTAT-------GAATCGTGCGGATTTGCCGGTGACAGCGAGA-CCTACGGACTTTT-AAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCNCGACACGCT-GTTGT---T-TA--AA-GCTG---TG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAGAC-GAT-TAC-NACCCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-A-CCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|1 : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTTAT-------GAATCGTGCGGATTTGCCGGTGACAGCGAGA-CCTACGGACTTTT-AAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCACAA-GCGCTGGTTATGAGT-TA--GA-AATGAAACGAGG--AGATCAGAAAC-T-CAA-AACCGGT----TTTGCAAAAGGTACGTGGTACCAACG-ACAAGGA-TAT-TA--TACCTATCA-------GTGAC-CTTTT-GTC--ACGCCGCC--CATTAT-T-------TT-TCTACTTTAGTTTACCAATC-A-CCTGTTGCATCCGGATTCCGAAG--TT-CTAAAACGACGTTT-ACGCGGTTCGCATGTCCC--GATA--TTTTTAA-TT-TGATAATT----C--A---TTA-TTTGG--ACCGACG--TTT--TTTAG-AAA-G--TTG----T-CAATAAGGTCCCAGTGGATTT----TT
gi|10 : tagcaataacacatcagttttatcgatagcacaagctgcctagccttagaacttattcaaataaaagaattcaatttattataaacgattttgcatcatttttattcaaggccgttacaatagttaaagacaatgttcttctgactcttgtgttatctggcaagataaacacatctagactgagattaccgtccgaatattcatctgaactcacaaatcttcgagttttaattgtaactcaactgcaaaatttctgattcataaattattctgggtgaatattcacaaccatcacatgaatcagccactcgggttttgaatacttatcgctaaggtggagcttgtgctatcagattaaaactgaatgtgttattgctgacttgtcattagagctcttgctctatttaagttaataaacaaaatacttcgtaagatatgtaccattacgcggttgtccctatagatgGACA-GCT-ATTGT---T-TA--AAAGCTG-------G--AGCTC-GAAA--TTCAC-A-CCTT---CGTTTACAAAAGGAACG---------CGTGCAAAACTGATCTACAGACTCTTttatcagaacacggacagttttcgacaaccaattgtgactaatctttgttaaaattaacgtttagagggtccacttgcgcgaagtcgcattcagacgctgttttggctagatagggattttaggaaaataattgattcagaaccggaaactgactgaacacagaaaatcgcggaaatagtcggtagatgaagtcgctgctaaaatgcggatatatgcggataagtagatcgctaaaattatgatcgcgaataattatggtccagcttgcagaatgataatatccacttaattttc
gi|11 : ttcgatcaggatatagtctgA-TTTGG--ACCG-----TTT--TCCAG-CAACG--TTG----T-T-----GGT-CCGGAGGATTT----TTGTATC--GGCC-CTGCCGAC
gi|13 : cGACACGCT--TTGG---T-TAGAAA-GCTG---TG-GA--AGCTC-GAAA--T-CACGAACCTTT-CCG-TTAC-AAAGGAACG---------C--ACAAcagtactctgattcatgaatactga
gi|15 : ACTCTTCATGTATACGTAAC-C-TTT-AAC--ACGCGGCT-ATG-TG----------TT-T----TTTGAGTGACC-TTC-A-CCT
gi|16 : a--TTTTCGA-TC-TTTTA-------C--C---GTA-TTTGG--ACCAATG--GTT--TCCAT-CAA-A--TTG----T-
gi|2 : TTTTTCTTTTTCCTTTTAAACCACTGAATTACTAGGTCGTTTGTTTTACG---TCTTTGG----GCA---GGAATTCA-----CCTGCTGTGGGTAAAAGAATACAGAC--CAA----GTGAA-GCTTTTTGTGGTTCTTATTATTAATAAAT-GTGTG--CTTGC--GTGATA-CGAGAACCTCCG--CTTTTTAA---TCATA--CC--TA-AGAAACCTTGA-TCACTTA-TCTAAACTA--TTGCTGTGCTTTTCG-----TACAA-TATATGT-GCTTGAC-CGCT--TTGT---T-TA--AA-GCTG----------AGCTC-AAAA--T-CAC-AACCTT--CCGTTTACAAAAGGAACG---------CT-CAAAAACTGATCTAC-CACTCTTCAT--A--CGTAAC-C-TTT-AAC--ATGCGGCC-ATGTTGGGT-------TT-T----TTTGAGTAACC-TTC-A-CCTG-TGCATCCCAATCCAG-AG--TT-CTAAAATAA----T-A--CGAT---CACGT-CC--GATA--TTTTCGA-TC-TGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-C-----GGT-CCAGGGCATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|3 : GACACGCT--TTGT---TAGA--AA-GCTG---TG-GGGAAGCTC-GAAAAAT-CAC-GACCTTTTCCGTT-ACAAAAGGAACG---------CA-CCAA---------------CTTTCATGTA--TATAACTC-TTT-AACCAAC-CGGCCTATGT--G-T-------TT-T----ATGAAGTG-CC-TTC-AACCTG-TGCATTCCAATCACG-AGTTTT-TTAAAATAA----T-A--GAATC--CACGT-TCCGGATATTTTTTTGA-TC-CGTTATTCTCGGC--G---GTATTTTGG--A-AGATGTTTTT--TCCAG-CAA-GTTTTG----TCC-----GGT-CATGGGGACTT----TT
gi|4 : atctTA--TTTTCGA-TC-TGTTA-------C--A---GTA-TCTGG--ACCGAAG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-AT------------CGACAGGACCGATAtta
gi|5 : GCT-ACGTTGG-TGTTGCTCTTGT----TTTTAATGATA-ATCTG-TTTG-TGCATCCTGACCCCA-CA--CT-CTAAAATCT----T-A--GGAA---CTTGT-CG--GACA---TTCCAA-TC-GTTTAT------T--T---GTA-CATGT--ACCATCG--TTT--TCTAG-TAA-G--TTATCACT-C-----AGT-CCAGAGAATTTAATCTT--ATT--GGCT-TTGACAATATGACCAACAgttttctacaactctgactccctaaaactaataccagagtcgatgacggaagtaggataaaaagcttacggtcgggggttataaattagggtagttcgggtaaccggaattttggcctaaaaattcagattgctgaaacttaaaaattgttgtttttcagaagtttaaatgtctgccgattttga
gi|6 : TA--CGTAAC-C-TTTTAAC--ACGTGGCC-ATGTTTT-T-------TT-T----TTTGAGTGACC-TTC-A-CCGG-TGCATCCTAATCCCG-AG--TT-CTGAAATAA----T-A--CGAT---CCCGC-CC--GATA--TTTTCGA-TC-TGTTC-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-T-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATAgttttcaacaacattattgcaaatcttgc
gi|7 : TG-TGCATCCCAATCACG-AG--TT--TAAAATAA----T-A--ATAC---CACGT-CT--GAT---TTTTTGA-CT-CCTTA-------CCGC---GTA-TTTGGAAAACGATG--TTTTGTCCAGCCAA-GT-TTG----T-C-----GGT-CATGGGGATTT----TT--ATCTTGGCC-gttttctacaa
gi|8 : tgagttttggtatatagagaaacactttaaTT-A-CCTG--GCAT---G--CCCT-AG--TTTCTAAAATAA----T-A--TGAT---CAC-T-CC--GATA--TTTTTAA-TC-GG----------C--C---AT--TTGGG--ACCACTC--TTT--TCTAG-CAA-G--TTA----T-------GGT-CCAGGG-ATCT----TTT-ATC--GGTTTCTGCCGACAGGAC
gi|9 : atgtaaatgcgtaatttatggataaTG-TGCATCCCAAGTCAG-AG--TT-TTAAAATCA----TGA--AGAT---AACGT-CT---AT---TTTTTGACTCTCGTTA-------C--CGGGGTA-TTGGA--AACGATG--TTT--TTCCC-CAA-GTTTTG----T-C-----GGT-CATGGGGATTT----TTA-ga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GACATTGATGATGTTTTTACCAATCACAAGCATTTTAAATCGGTCCTGCCAGCATGACCAGCAGTTTTCCACAACTCTGAAA
Unaligned ( gi|14 ): TTTACTGGCCTTGGCAATAGGACTGACAGTTTTCGACATCTCTGTTTAAAATTTCAAATCTTGCA
Unaligned ( gi|17 ): CTGGTTTAAAAAAAAAAAATCAATAAAAGTA
Alignments
lowQualScore : 2222 1 22222 222 2222 222 22222 11 2222 1 1 3333333 1 11 11 1 1 11 1 222 11 11 1 1 1 11 22222 1 1 11 111 11 3333333333 11 222 3333333333333 2222 111111 11 33333333333 1111 1 1111 111 22222222222222 11 1111111 11
lowQualScore : 1 3333 1 5 77777 1 111 1 3333 111 55555 2 1 88 4444 2 5 22 5 3333333 5 88 77 5 5 1 88 5 000 88 88 5 5 5 1 1 77 22 66666 1 5 1 5 1 3 99 444 8 11 5 2222222222 8 99 8 8 0 333 0 0 0 9999999999999 0 3 2 2 0000 999999 8 8 8 11 6 0 11111111111 6 4444 6 1 5 0 5 66 55 0000 5 777 333 5 66 777 4 77 77777777777777 3 55 1 55 55 3 3 33 7777 1111111 4 0 8888 33 77 5
lowQualScore : . .... . . ..... . ... . .... ... ..... . . .. .... . . .. . ....... . .. .. . . . .. . ... .. .. . . . . . .. .. ..... . . . . . . .. ... . .. . .......... . .. . . . ... . . . ............. . . . . .... ...... . . . .. . . ........... . .... . . . . . .. .. .... . ... ... . .. ... . .. .............. . .. . .. .. . . .. .... ....... . . .... .. .. .
lowQualScore : 0 5555 0 0 00000 0 000 0 5555 000 55555 5 0 55 0000 5 5 00 5 5555555 0 00 55 0 5 0 00 5 555 00 00 0 5 5 0 0 55 00 00000 0 0 0 5 0 8 00 000 0 00 0 6666666666 0 00 0 0 8 666 8 8 8 2222222222222 8 2 5 5 5555 444444 0 0 0 00 7 7 00000000000 7 2222 7 4 0 2 0 99 22 6666 0 999 888 0 99 444 0 00 22222222222222 6 00 8 00 00 6 6 66 7777 8888888 0 3 5555 44 99 7
consensus : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AAGCTG---CG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
Reference ( family-3136 ) : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AAGCTG---CG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|1 : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTTAT-------GAATCGTGCGGATTTGCCGGTGACAGCGAGA-CCTACGGACTTTT-AAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCACAA-GCGCTGGTTATGAGT-TA--GAAATGAAACGAGG--AGATCAGAAAC-T-CAA-AACCGGT----TTTGCAAAAGGTACGTGGTACCAACG-ACAAG---GATATTA-TACCTATCA-------GTGAC-CTTTT-GTC--ACGCCGCC--CATTAT-T-------TT-TCTACTTTAGTTTACCAATC-ACCTGTTGCATCCGGATTCCGAAG--TT-CTAAAACGACGTTT-ACGCGGTTCGCATGTCCC--GATA--TTTTTAA-TT-TGATAATT----C--A---TTA-TTTGG--ACCGACG--TTT--TTTAG-AAA-G--TTG----T-CAATAAGGTCCCAGTGGATTT----TT
gi|10 : tagcaataacacatcagttttatcgatagcacaagctgcctagccttagaacttattcaaataaaagaattcaatttattataaacgattttgcatcatttttattcaaggccgttacaatagttaaagacaatgttcttctgactcttgtgttatctggcaagataaacacatctagactgagattaccgtccgaatattcatctgaactcacaaatcttcgagttttaattgtaactcaactgcaaaatttctgattcataaattattctgggtgaatattcacaaccatcacatgaatcagccactcgggttttgaatacttatcgctaaggtggagcttgtgctatcagattaaaactgaatgtgttattgctgacttgtcattagagctcttgctctatttaagttaataaacaaaatacttcgtaagatatgtaccattacgcggttgtccctatagatgGACA-GCTA-TTGT---T-TA--AAA--G---CT-GG--AGCTC-GAAA--TTCAC-A-CCTT---CGTTTACAAAAGGAACG---------CGTGCAAAACTGATCTACAGACTCTTttatcagaacacggacagttttcgacaaccaattgtgactaatctttgttaaaattaacgtttagagggtccacttgcgcgaagtcgcattcagacgctgttttggctagatagggattttaggaaaataattgattcagaaccggaaactgactgaacacagaaaatcgcggaaatagtcggtagatgaagtcgctgctaaaatgcggatatatgcggataagtagatcgctaaaattatgatcgcgaataattatggtccagcttgcagaatgataatatccacttaattttc
gi|11 : ttcgatcaggatatagtctgA-TTTGG--ACCG-----TTT--TCCAG-CAACG--TTG----T-T-----GGT-CCGGAGGATTT----TTGTATC--GGCC-CTGCCGAC
gi|13 : cGACACGCT--TTGG---T-TAGAAAGCTG---TG-GA--AGCTC-GAAA--T-CACGAACCTTT-CCG-TTAC-AAAGGAACG---------C--ACAAcagtactctgattcatgaatactga
gi|15 : ACTCTTCATGTATACGTAAC-C-TTT-AAC--ACGCGGCT-ATG-TG----------TT-T----TTTGAGTGACC-TTC-ACCT
gi|16 : a--TTTTCGA-TC-TTTTA-------C--C---GTA-TTTGG--ACCAATG--GTT--TCCAT-CAA-A--TTG----T-
gi|2 : TTTTTCTTTTTCCTTTTAAACCACTGAATTACTAGGTCGTTTGTTTTACG---TCTTTGG----GCA---GGAATTCA-----CCTGCTGTGGGTAAAAGAATACAGAC--CAA----GTGAA-GCTTTTTGTGGTTCTTATTATTAATAAAT-GTGTG--CTTGC--GTGATA-CGAGAACCTCCG--CTTTTTAA---TCATA--CC--TA-AGAAACCTTGA-TCACTTA-TCTAAACTA--TTGCTGTGCTTTTCG-----TACAA-TATATGT-GCTTGAC-CGCT--TTGT---T-TA--AAGCTG----------AGCTC-AAAA--T-CAC-AACCTT--CCGTTTACAAAAGGAACG---------CT-CAAAAACTGATCTAC-CACTCTTCAT--A--CGTAAC-C-TTT-AAC--ATGCGGCC-ATGTTGGGT-------TT-T----TTTGAGTAACC-TTC-ACCTG-TGCATCCCAATCCAG-AG--TT-CTAAAATAA----T-A--CGAT---CACGT-CC--GATA--TTTTCGA-TC-TGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-C-----GGT-CCAGGGCATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|3 : GACACGCT--TTGT---TAGA--AAGCTG---TG-GGGAAGCTC-GAAAAAT-CAC-GACCTTTTCCGTT-ACAAAAGGAACG---------CA-CC--AACT-------------TTCATGTA--TATAACTC-TTT-AACCAAC-CGGCCTATGT--G-T-------TT-T----ATGAAGTG-CC-TTCAACCTG-TGCATTCCAATCACG-AGTTTT-TTAAAATAA----T-A--GAATC--CACGT-TCCGGATATTTTTTTGA-TC-CGTTATTCTCGGC--G---GTATTTTGG--A-AGATGTTTTT--TCCAG-CAA-GTTTTG----TCC-----GGT-CATGGGGACTT----TT
gi|4 : atctTA--TTTTCGA-TC-TGTTA-------C--A---GTA-TCTGG--ACCGAAG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-AT------------CGACAGGACCGATAtta
gi|5 : GCT-ACGTTGG-TGTTGCTCTTGT----TTTTAATGATA-ATCTGTTTG-TGCATCCTGACCCCA-CA--CT-CTAAAATCT----T-A--GGAA---CTTGT-CG--GACA---TTCCAA-TC-GTTTAT------T--T---GTA-CATGT--ACCATCG--TTT--TCTAG-TAA-G--TTATCACT-C-----AGT-CCAGAGAATTTAATCTT--ATT--GGCT-TTGACAATATGACCAACAgttttctacaactctgactccctaaaactaataccagagtcgatgacggaagtaggataaaaagcttacggtcgggggttataaattagggtagttcgggtaaccggaattttggcctaaaaattcagattgctgaaacttaaaaattgttgtttttcagaagtttaaatgtctgccgattttga
gi|6 : TA--CGTAAC-C-TTTTAAC--ACGTGGCC-ATGTTTT-T-------TT-T----TTTGAGTGACC-TTC-ACCGG-TGCATCCTAATCCCG-AG--TT-CTGAAATAA----T-A--CGAT---CCCGC-CC--GATA--TTTTCGA-TC-TGTTC-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-T-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATAgttttcaacaacattattgcaaatcttgc
gi|7 : TG-TGCATCCCAATCACG-AG--TT--TAAAATAA----T-A--ATAC---CACGT-CT--GAT---TTTTTGA-CT-CCTTA-------CCGC---GTA-TTTGGAAAACGATG--TTTTGTCCAGCCAA-GT-TTG----T-C-----GGT-CATGGGGATTT----TT--ATCTTGGCC-gttttctacaa
gi|8 : tgagttttggtatatagagaaacactttaaTT-ACCTG--GCAT---G--CCCT-AG--TTTCTAAAATAA----T-A--TGAT---CAC-T-CC--GATA--TTTTTAA-TC-GG----------C--C---AT--TTGGG--ACCACTC--TTT--TCTAG-CAA-G--TTA----T-------GGT-CCAGGG-ATCT----TTT-ATC--GGTTTCTGCCGACAGGAC
gi|9 : atgtaaatgcgtaatttatggataaTG-TGCATCCCAAGTCAG-AG--TT-TTAAAATCA----TGA--AGAT---AACGT-CT---AT---TTTTTGACTCTCGTTA-------C--CGGGGTA-TTGGA--AACGATG--TTT--TTCCC-CAA-GTTTTG----T-C-----GGT-CATGGGGATTT----TTA-ga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GACATTGATGATGTTTTTACCAATCACAAGCATTTTAAATCGGTCCTGCCAGCATGACCAGCAGTTTTCCACAACTCTGAAA
Unaligned ( gi|14 ): TTTACTGGCCTTGGCAATAGGACTGACAGTTTTCGACATCTCTGTTTAAAATTTCAAATCTTGCA
Unaligned ( gi|17 ): CTGGTTTAAAAAAAAAAAATCAATAAAAGTA
Alignments
lowQualScore : 2222 1 22222 222 2222 222 22222 11 2222 1 1 3333333 1 11 11 1 1 11 1 222 11 11 1 1 1 11 22222 1 1 11 111 11 3333333333 11 222 3333333333333 2222 111111 11 33333333333 1111 1 1111 111 22222222222222 11 1111111 11
lowQualScore : 1 3333 1 5 77777 1 111 1 3333 111 55555 2 1 88 4444 2 5 22 5 3333333 5 88 77 5 5 1 88 5 000 88 88 5 5 5 1 1 77 22 66666 1 5 1 5 1 3 99 444 8 11 5 2222222222 8 99 8 8 0 333 0 0 0 9999999999999 0 3 2 2 0000 999999 8 8 8 11 6 0 11111111111 6 4444 6 1 5 0 5 66 55 0000 5 777 333 5 66 777 4 77 77777777777777 3 55 1 55 55 3 3 33 7777 1111111 4 0 8888 33 77 5
lowQualScore : . .... . . ..... . ... . .... ... ..... . . .. .... . . .. . ....... . .. .. . . . .. . ... .. .. . . . . . .. .. ..... . . . . . . .. ... . .. . .......... . .. . . . ... . . . ............. . . . . .... ...... . . . .. . . ........... . .... . . . . . .. .. .... . ... ... . .. ... . .. .............. . .. . .. .. . . .. .... ....... . . .... .. .. .
lowQualScore : 0 5555 0 0 00000 0 000 0 5555 000 55555 5 0 55 0000 5 5 00 5 5555555 0 00 55 0 5 0 00 5 555 00 00 0 5 5 0 0 55 00 00000 0 0 0 5 0 8 00 000 0 00 0 6666666666 0 00 0 0 8 666 8 8 8 2222222222222 8 2 5 5 5555 444444 0 0 0 00 7 7 00000000000 7 2222 7 4 0 2 0 99 22 6666 0 999 888 0 99 444 0 00 22222222222222 6 00 8 00 00 6 6 66 7777 8888888 0 3 5555 44 99 7
consensus : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AAGCTG---CG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
Reference ( family-3136 ) : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AAGCTG---CG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|1 : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTTAT-------GAATCGTGCGGATTTGCCGGTGACAGCGAGA-CCTACGGACTTTT-AAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCACAA-GCGCTGGTTATGAGT-TA--GAAATGAAACGAGG--AGATCAGAAAC-T-CAA-AACCGGT----TTTGCAAAAGGTACGTGGTACCAACG-ACAAG---GATATTA-TACCTATCA-------GTGAC-CTTTT-GTC--ACGCCGCC--CATTAT-T-------TT-TCTACTTTAGTTTACCAATC-ACCTGTTGCATCCGGATTCCGAAG--TT-CTAAAACGACGTTT-ACGCGGTTCGCATGTCCC--GATA--TTTTTAA-TT-TGATAATT----C--A---TTA-TTTGG--ACCGACG--TTT--TTTAG-AAA-G--TTG----T-CAATAAGGTCCCAGTGGATTT----TT
gi|10 : tagcaataacacatcagttttatcgatagcacaagctgcctagccttagaacttattcaaataaaagaattcaatttattataaacgattttgcatcatttttattcaaggccgttacaatagttaaagacaatgttcttctgactcttgtgttatctggcaagataaacacatctagactgagattaccgtccgaatattcatctgaactcacaaatcttcgagttttaattgtaactcaactgcaaaatttctgattcataaattattctgggtgaatattcacaaccatcacatgaatcagccactcgggttttgaatacttatcgctaaggtggagcttgtgctatcagattaaaactgaatgtgttattgctgacttgtcattagagctcttgctctatttaagttaataaacaaaatacttcgtaagatatgtaccattacgcggttgtccctatagatgGACA-GCTA-TTGT---T-TA--AAA--G---CT-GG--AGCTC-GAAA--TTCAC-A-CCTT---CGTTTACAAAAGGAACG---------CGTGCAAAACTGATCTACAGACTCTTttatcagaacacggacagttttcgacaaccaattgtgactaatctttgttaaaattaacgtttagagggtccacttgcgcgaagtcgcattcagacgctgttttggctagatagggattttaggaaaataattgattcagaaccggaaactgactgaacacagaaaatcgcggaaatagtcggtagatgaagtcgctgctaaaatgcggatatatgcggataagtagatcgctaaaattatgatcgcgaataattatggtccagcttgcagaatgataatatccacttaattttc
gi|11 : ttcgatcaggatatagtctgA-TTTGG--ACCG-----TTT--TCCAG-CAACG--TTG----T-T-----GGT-CCGGAGGATTT----TTGTATC--GGCC-CTGCCGAC
gi|13 : cGACACGCT--TTGG---T-TAGAAAGCTG---TG-GA--AGCTC-GAAA--T-CACGAACCTTT-CCG-TTAC-AAAGGAACG---------C--ACAAcagtactctgattcatgaatactga
gi|15 : ACTCTTCATGTATACGTAAC-C-TTT-AAC--ACGCGGCT-ATG-TG----------TT-T----TTTGAGTGACC-TTC-ACCT
gi|16 : a--TTTTCGA-TC-TTTTA-------C--C---GTA-TTTGG--ACCAATG--GTT--TCCAT-CAA-A--TTG----T-
gi|2 : TTTTTCTTTTTCCTTTTAAACCACTGAATTACTAGGTCGTTTGTTTTACG---TCTTTGG----GCA---GGAATTCA-----CCTGCTGTGGGTAAAAGAATACAGAC--CAA----GTGAA-GCTTTTTGTGGTTCTTATTATTAATAAAT-GTGTG--CTTGC--GTGATA-CGAGAACCTCCG--CTTTTTAA---TCATA--CC--TA-AGAAACCTTGA-TCACTTA-TCTAAACTA--TTGCTGTGCTTTTCG-----TACAA-TATATGT-GCTTGAC-CGCT--TTGT---T-TA--AAGCTG----------AGCTC-AAAA--T-CAC-AACCTT--CCGTTTACAAAAGGAACG---------CT-CAAAAACTGATCTAC-CACTCTTCAT--A--CGTAAC-C-TTT-AAC--ATGCGGCC-ATGTTGGGT-------TT-T----TTTGAGTAACC-TTC-ACCTG-TGCATCCCAATCCAG-AG--TT-CTAAAATAA----T-A--CGAT---CACGT-CC--GATA--TTTTCGA-TC-TGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-C-----GGT-CCAGGGCATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|3 : GACACGCT--TTGT---TAGA--AAGCTG---TG-GGGAAGCTC-GAAAAAT-CAC-GACCTTTTCCGTT-ACAAAAGGAACG---------CA-CC--AACT-------------TTCATGTA--TATAACTC-TTT-AACCAAC-CGGCCTATGT--G-T-------TT-T----ATGAAGTG-CC-TTCAACCTG-TGCATTCCAATCACG-AGTTTT-TTAAAATAA----T-A--GAATC--CACGT-TCCGGATATTTTTTTGA-TC-CGTTATTCTCGGC--G---GTATTTTGG--A-AGATGTTTTT--TCCAG-CAA-GTTTTG----TCC-----GGT-CATGGGGACTT----TT
gi|4 : atctTA--TTTTCGA-TC-TGTTA-------C--A---GTA-TCTGG--ACCGAAG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-AT------------CGACAGGACCGATAtta
gi|5 : GCT-ACGTTGG-TGTTGCTCTTGT----TTTTAATGATA-ATCTGTTTG-TGCATCCTGACCCCA-CA--CT-CTAAAATCT----T-A--GGAA---CTTGT-CG--GACA---TTCCAA-TC-GTTTAT------T--T---GTA-CATGT--ACCATCG--TTT--TCTAG-TAA-G--TTATCACT-C-----AGT-CCAGAGAATTTAATCTT--ATT--GGCT-TTGACAATATGACCAACAgttttctacaactctgactccctaaaactaataccagagtcgatgacggaagtaggataaaaagcttacggtcgggggttataaattagggtagttcgggtaaccggaattttggcctaaaaattcagattgctgaaacttaaaaattgttgtttttcagaagtttaaatgtctgccgattttga
gi|6 : TA--CGTAAC-C-TTTTAAC--ACGTGGCC-ATGTTTT-T-------TT-T----TTTGAGTGACC-TTC-ACCGG-TGCATCCTAATCCCG-AG--TT-CTGAAATAA----T-A--CGAT---CCCGC-CC--GATA--TTTTCGA-TC-TGTTC-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-T-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATAgttttcaacaacattattgcaaatcttgc
gi|7 : TG-TGCATCCCAATCACG-AG--TT--TAAAATAA----T-A--ATAC---CACGT-CT--GAT---TTTTTGA-CT-CCTTA-------CCGC---GTA-TTTGGAAAACGATG--TTTTGTCCAGCCAA-GT-TTG----T-C-----GGT-CATGGGGATTT----TT--ATCTTGGCC-gttttctacaa
gi|8 : tgagttttggtatatagagaaacactttaaTT-ACCTG--GCAT---G--CCCT-AG--TTTCTAAAATAA----T-A--TGAT---CAC-T-CC--GATA--TTTTTAA-TC-GG----------C--C---AT--TTGGG--ACCACTC--TTT--TCTAG-CAA-G--TTA----T-------GGT-CCAGGG-ATCT----TTT-ATC--GGTTTCTGCCGACAGGAC
gi|9 : atgtaaatgcgtaatttatggataaTG-TGCATCCCAAGTCAG-AG--TT-TTAAAATCA----TGA--AGAT---AACGT-CT---AT---TTTTTGACTCTCGTTA-------C--CGGGGTA-TTGGA--AACGATG--TTT--TTCCC-CAA-GTTTTG----T-C-----GGT-CATGGGGATTT----TTA-ga
blockSeqs : T CCTT A C TTACT C . G . . . A A . . G . TT T TATTAAT . . . . A C . T . . . . . . T T . TT . C . T . T A A . A GA C TGGGGA . AA T G TTC CGTG A G C ACAG TGTATA T . T CA T GGTGTTGCTC G . . A . . TT TC . G C C . CG ATT C TC TTCTCGGCG T AA T TT TG C C TT TCAC CC . AATC A TT T
blockSeqs : A . . . . C CTGG . . . . TC CTC A G C ACC TGTA . . . . . GGGT . . . T . . . C . . G . . . A . T CCGGG . . C . . . . TT . T . . A . .
blockSeqs : A . . . . C TGGA . . . . C CAC A . . . TA . . . . . TTT . . . . . . . T . . G . . . A . T CCGC . . T . . . . T . C . . A . .
blockSeqs : . . . . . . . . . . . . CA . . . . . GT . . . . . . . C . . C . . . A . C TTT . . A . . . . . . C . . T . .
blockSeqs : . G . . . . . . . C . . A . . . A . T CC . . C . . . . . . C . . A . .
blockSeqs : . . . . T . . T . . . A . G CC . . C . . . . . . T . . . . .
blockSeqs : . . . . . . A . . . . . T CA . . T . . . . . . C . . .
blockSeqs : . . C CC . . T . . . . . . C . .
blockSeqs : . G CC . . T . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** *** CGG******* ** C** CGC********** GGT******** **** **** N** *** CC************ C****** A*
originalCons : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AAGCTG---CG-GG--AGCTC-GAAA--T-CAC-AACCTTT-CCGTTTACAAAAGGAACG---------CG-NCAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
finalCons : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AAGCTGCGG-------AGCTC-GAAA--T-CAC-AACCTTC--CGTTTACAAAAGGAACGCGC----------CAAAACTGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGGT--------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-AN--GAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTACC------------GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----TC------GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GACATTGATGATGTTTTTACCAATCACAAGCATTTTAAATCGGTCCTGCCAGCATGACCAGCAGTTTTCCACAACTCTGAAA
Unaligned ( gi|14 ): TTTACTGGCCTTGGCAATAGGACTGACAGTTTTCGACATCTCTGTTTAAAATTTCAAATCTTGCA
Unaligned ( gi|17 ): CTGGTTTAAAAAAAAAAAATCAATAAAAGTA
Alignments
lowQualScore : 2222 1 22222 222 2222 222 22222 11 2222 1 1 3333333 1 11 11 1 1 2222 222 11 11 1 1 1 11 22222 1 1 11 111 11 55555555555 11 11 111 2222222222 222222222222 111111 11 33333333333 1111 1 1111 111 22222222222222 11 1111111 11
lowQualScore : 1 3333 1 5 77777 1 111 1 3333 111 55555 2 1 88 4444 2 5 22 5 3333333 5 88 77 5 5 1 3333 000 88 88 5 5 5 1 1 77 22 66666 1 5 1 5 1 3 99 444 8 11 8 00000000000 8 8 99 8 8 0 8 11 111 0 0 3333333333 777777777777 999999 8 8 8 11 6 0 11111111111 6 4444 6 1 5 0 5 66 55 0000 5 777 333 5 66 777 4 77 77777777777777 3 55 1 55 55 3 3 33 7777 1111111 4 0 8888 33 77 5
lowQualScore : . .... . . ..... . ... . .... ... ..... . . .. .... . . .. . ....... . .. .. . . . .... ... .. .. . . . . . .. .. ..... . . . . . . .. ... . .. . ........... . . .. . . . . .. ... . . .......... ............ ...... . . . .. . . ........... . .... . . . . . .. .. .... . ... ... . .. ... . .. .............. . .. . .. .. . . .. .... ....... . . .... .. .. .
lowQualScore : 0 5555 0 0 00000 0 000 0 5555 000 55555 5 0 55 0000 5 5 00 5 5555555 0 00 55 0 5 0 5555 555 00 00 0 5 5 0 0 55 00 00000 0 0 0 5 0 8 00 000 0 00 0 44444444444 0 0 00 0 0 8 0 00 888 8 8 1111111111 222222222222 444444 0 0 0 00 7 7 00000000000 7 2222 7 4 0 2 0 99 22 6666 0 999 888 0 99 444 0 00 22222222222222 6 00 8 00 00 6 6 66 7777 8888888 0 3 5555 44 99 7
consensus : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AA-GCTG---C--GG---A-GCTC-GAAA--T-CAC-AACC-TT--CCG--TTTACAAAAGGAACGCG---C-CAA-AAC--TGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
Reference ( family-3136 ) : TTNTTCTTTTCCCTTTTANACCACTGAATTACTAGGTCGTTTGTTTTANGAGATCTCTNGCCTAGCACTTGGGATCCAGACGCCCCGCTGTGGGTAAACGANCACAGACATCAATTAGGCGAATGCTTTNNGTGGTTCTTATTATTAATGAATCGTGCGGACTTGCCGGTGACAGCGAGAACCTNCGGACTTTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCNAAACNAGCCTGCTGCGCTTNNCGAGCAGTANAAGTATANGTAGCNCGACACGCT--TTGT---T-TA--AA-GCTG---C--GG---A-GCTC-GAAA--T-CAC-AACC-TT--CCG--TTTACAAAAGGAACGCG---C-CAA-AAC--TGATCTAC-NACTCTTCATGTA--CGTAAC-C-TTT-AAC--ACGCGGCC-ACGTTGG-T-------TT-T----TTTGAGTGACC-TTC-ACCTG-TGCATCCCGATCCCG-AG--TT-CTAAAATAA----T-A--NGAT---CACGT-CC--GATA--TTTTCGA-TC-CGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|1 : TTGTTCTTTTC----TTACACTA-TGAA-----AGGTCGTTTGTTTTAGGAGATTTCTCGCCTAACACTTGAGATCCAGACGCCCCGCTATAGGTAAACAACCACAAATATCAATTAGGCCAATGCTTTGAG-GGTTCTT-------ATGAATCGTGCGGATTTGCCGGTGACAGCGAG-ACCTACGGAC-TTTTAAGGTTCATATGCCGATAGAGAAACCTTGAATCGCTCAATCAAAACAAGCCTGTTGCGTTTGACGAGCAGTAAAAGTATAGGTAGCACAA-GCGCTGGTTATGAGT-TA--GA-AATGAAACGAGG---A-GATCAGAAAC-T-CAA-AA-------CCGGTTTTGCAAAAGGTACGTGGTAC-CAACGACAAGGATATTA-TACCTATCA-------GTGAC-CTTTT-GTC--ACGCCGCC--CATTAT-T-------TT-TCTACTTTAGTTTACCAATC-ACCTGTTGCATCCGGATTCCGAAG--TT-CTAAAACGACGTTT-ACGCGGTTCGCATGTCCC--GATA--TTTTTAA-TT-TGATAATT----C--A---TTA-TTTGG--ACCGACG--TTT--TTTAG-AAA-G--TTG----T-CAATAAGGTCCCAGTGGATTT----TT
gi|10 : tagcaataacacatcagttttatcgatagcacaagctgcctagccttagaacttattcaaataaaagaattcaatttattataaacgattttgcatcatttttattcaaggccgttacaatagttaaagacaatgttcttctgactcttgtgttatctggcaagataaacacatctagactgagattaccgtccgaatattcatctgaactcacaaatcttcgagttttaattgtaactcaactgcaaaatttctgattcataaattattctgggtgaatattcacaaccatcacatgaatcagccactcgggttttgaatacttatcgctaaggtggagcttgtgctatcagattaaaactgaatgtgttattgctgacttgtcattagagctcttgctctatttaagttaataaacaaaatacttcgtaagatatgtaccattacgcggttgtccctatagatgGACA-GCTA-TTGT---T-TA--AAAGCTG-------G---A-GCTC-GAAA--TTCAC-A-CC-TT--C-G--TTTACAAAAGGAACGCG---TGCAA-AAC--TGATCTACAGACTCTTttatcagaacacggacagttttcgacaaccaattgtgactaatctttgttaaaattaacgtttagagggtccacttgcgcgaagtcgcattcagacgctgttttggctagatagggattttaggaaaataattgattcagaaccggaaactgactgaacacagaaaatcgcggaaatagtcggtagatgaagtcgctgctaaaatgcggatatatgcggataagtagatcgctaaaattatgatcgcgaataattatggtccagcttgcagaatgataatatccacttaattttc
gi|11 : ttcgatcaggatatagtctgA-TTTGG--ACCG-----TTT--TCCAG-CAACG--TTG----T-T-----GGT-CCGGAGGATTT----TTGTATC--GGCC-CTGCCGAC
gi|13 : cGACACGCT--TTGG---T-TAGAAA-GCTG---T--GG---AAGCTC-GAAA--T-CACGAACCTTT--CCG---TTAC-AAAGGAACGCA---C-cagtactctgattcatgaatactga
gi|15 : ACTCTTCATGTATACGTAAC-C-TTT-AAC--ACGCGGCT-ATG-TG----------TT-T----TTTGAGTGACC-TTC-ACCTaa
gi|16 : a--TTTTCGA-TC-TTTTA-------C--C---GTA-TTTGG--ACCAATG--GTT--TCCAT-CAA-A--TTG----T-
gi|2 : TTTTTCTTTTTCCTTTTAAACCACTGAATTACTAGGTCGTTTGTTTTACG---TCTTTGG----GCA---GGAATTCA-----CCTGCTGTGGGTAAAAGAATACAGAC--CAA----GTGAA-GCTTTTTGTGGTTCTTATTATTAATAAAT-GTGTG--CTTGC--GTGATA-CGAGAACCTCCG--CTTTTTAA---TCATA--CC--TA-AGAAACCTTGA-TCACTTA-TCTAAACTA--TTGCTGTGCTTTTCG-----TACAA-TATATGT-GCTTGAC-CGCT--TTGT---T-TA--AA-GCTG-----------A-GCTC-AAAA--T-CAC-AACC-TT--CCG--TTTACAAAAGGAACGCT---C-AAA-AAC--TGATCTAC-CACTCTTCAT--A--CGTAAC-C-TTT-AAC--ATGCGGCC-ATGTTGGGT-------TT-T----TTTGAGTAACC-TTC-ACCTG-TGCATCCCAATCCAG-AG--TT-CTAAAATAA----T-A--CGAT---CACGT-CC--GATA--TTTTCGA-TC-TGTTA-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-C-----GGT-CCAGGGCATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATA
gi|3 : GACACGCT--TTGT---TAGA--AA-GCTG---T--GGGGAA-GCTC-GAAAAAT-CAC-GACC-TTTTCCG--TT-ACAAAAGGAACGCA---C-C---AAC--T-------------TTCATGTA--TATAACTC-TTT-AACCAAC-CGGCCTATGT--G-T-------TT-T----ATGAAGTG-CC-TTCAACCTG-TGCATTCCAATCACG-AGTTTT-TTAAAATAA----T-A--GAATC--CACGT-TCCGGATATTTTTTTGA-TC-CGTTATTCTCGGC--G---GTATTTTGG--A-AGATGTTTTT--TCCAG-CAA-GTTTTG----TCC-----GGT-CATGGGGACTT----TT
gi|4 : atctTA--TTTTCGA-TC-TGTTA-------C--A---GTA-TCTGG--ACCGAAG--TTT--TCCAG-CAA-G--TTG----T-C-----GGT-CCAGGGGATTT----TTA-AT------------CGACAGGACCGATAtta
gi|5 : GCT-ACGTTGG-TGTTGCTCTTGT----TTTTAATGATA-ATCTGTTTG-TGCATCCTGACCCCA-CA--CT-CTAAAATCT----T-A--GGAA---CTTGT-CG--GACA---TTCCAA-TC-GTTTAT------T--T---GTA-CATGT--ACCATCG--TTT--TCTAG-TAA-G--TTATCACT-C-----AGT-CCAGAGAATTTAATCTT--ATT--GGCT-TTGACAATATGACCAACAgttttctacaactctgactccctaaaactaataccagagtcgatgacggaagtaggataaaaagcttacggtcgggggttataaattagggtagttcgggtaaccggaattttggcctaaaaattcagattgctgaaacttaaaaattgttgtttttcagaagtttaaatgtctgccgattttga
gi|6 : TA--CGTAAC-C-TTTTAAC--ACGTGGCC-ATGTTTT-T-------TT-T----TTTGAGTGACC-TTC-ACCGG-TGCATCCTAATCCCG-AG--TT-CTGAAATAA----T-A--CGAT---CCCGC-CC--GATA--TTTTCGA-TC-TGTTC-------C--C---GTA-TTTGG--ACCGACG--TTT--TCCAT-CAA-G--TTG----T-T-----GGT-CCAGGGGATTT----TTA-ATC--GGCC-CTGCCGACAGGACCGATAgttttcaacaacattattgcaaatcttgc
gi|7 : TG-TGCATCCCAATCACG-AG--TT--TAAAATAA----T-A--ATAC---CACGT-CT--GAT---TTTTTGA-CT-CCTTA-------CCGC---GTA-TTTGGAAAACGATG--TTTTGTCCAGCCAA-GT-TTG----T-C-----GGT-CATGGGGATTT----TT--ATCTTGGCC-gttttctacaa
gi|8 : tgagttttggtatatagagaaacactttaaTT-ACCTG--GCAT---G--CCCT-AG--TTTCTAAAATAA----T-A--TGAT---CAC-T-CC--GATA--TTTTTAA-TC-GG----------C--C---AT--TTGGG--ACCACTC--TTT--TCTAG-CAA-G--TTA----T-------GGT-CCAGGG-ATCT----TTT-ATC--GGTTTCTGCCGACAGGAC
gi|9 : atgtaaatgcgtaatttatggataaTG-TGCATCCCAAGTCAG-AG--TT-TTAAAATCA----TGA--AGAT---AACGT-CT---AT---TTTTTGACTCTCGTTA-------C--CGGGGTA-TTGGA--AACGATG--TTT--TTCCC-CAA-GTTTTG----T-C-----GGT-CATGGGGATTT----TTA-ga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GACATTGATGATGTTTTTACCAATCACAAGCATTTTAAATCGGTCCTGCCAGCATGACCAGCAGTTTTCCACAACTCTGAAA
Unaligned ( gi|14 ): TTTACTGGCCTTGGCAATAGGACTGACAGTTTTCGACATCTCTGTTTAAAATTTCAAATCTTGCA
Unaligned ( gi|17 ): CTGGTTTAAAAAAAAAAAATCAATAAAAGTA