lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1 1 111111 111111111111111111111111111111111111 333333333333333333333333333333333333333 4444444444444444444444444444444 1 1 111111111111 11111111 22222222222222222 1111 1 111 11 222222222 11 3333333333333 11111111 11111111111 22222222 1111111111 1111111111
lowQualScore : 99 6 3 2 444444 222222222222222222222222222222222222 55 444444444444444444444444444444444444444 55 3 3 3 2222222222222222222222222222222 6 0 555 3 4444 2 66 2 111111111111 7777 55 33333333 99999999999999999 4444 3 55 55 66 777 4 3 3 3 55 888 00 111111111 44 6 55 6666666666666 4 33 2 55 7 55555555 777 44444444444 333 44444444 0000000000 444 5 0000000000 777 2 66666 4
lowQualScore : .. . . . ...... .................................... .. ....................................... .. . . . ............................... . . ... . .... . .. . ............ .... .. ........ ................. .... . .. .. .. ... . . . . .. ... .. ......... .. . .. ............. . .. . .. . ........ ... ........... ... ........ .......... ... . .......... ... . ..... .
lowQualScore : 66 8 5 0 444444 888888888888888888888888888888888888 55 777777777777777777777777777777777777777 00 6 3 1 8888888888888888888888888888888 1 4 000 2 3333 9 88 9 666666666666 7777 00 22222222 00000000000000000 1111 6 00 55 99 888 4 9 6 3 55 888 88 888888888 66 2 00 0000000000000 1 22 2 33 1 77777777 888 44444444444 999 55555555 3333333333 111 1 3333333333 444 8 66666 9
consensus : AGGGCTCTCA-CACCACTTTTNGGGAATG------GGGCC--G------T-----T-------CTCA---AA--TGGG--AAAA-----TTN--C---CGC--TATTT-TGGGGAAA------ATT--GGG-AAAAA-CAACATTC-AC-AAAA-A------------C-----TC-ATCAAATTTTGCTTT---TCTAT--T-G-TTTTGTTT--TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACA----T-A--AC------ACA----G-T--AAGTT--TATTTTAA---A-TATCCAAAAATCTGTCCT-TAATGTTCATGAAAT--GCTC--NAAAANNTTTC-GATA-A-GGGAA--ATT-GGGAAAATTCC-ACTTTT---AAA----TTTGGGGAA--AAA-G--GTACCTTTTTT---C-A-ATTGGGAA---CGG-----------G---GCCG-------TTC----------AAC---GGCCC----------CATT---TATAGAGAAT----CGAGAGCCC
Reference ( gi|3 ) : AGGGCTCTCA-TACCACATTTTGGTAATG------GGGTT--G------T-----T-------CTCT---AG--TGGG--AAAA-----TTT--C---CAC--TATTT-TGGGAAAA------ATT--GGG-AAAAA-CAACATTC-ACTACAA-A------------C-----TC-GTTAAATTTTCCTCT---TCTGT--T-G-TTTTGTTT--TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACA----T-T--AC------ACA----G-T--AAGTT--TATTTCGA---A-TATCCAAAAATCTGTCCT-TATTGTTCATGAAAT--GCTC--GAAAAAATTTC-GAAA-A-GGGAA--ATT-GGGAAAATTCA-ACTTTT---AAA----TTTGGGGGA--AAA-G--GTACCTCTTTT---C-A-GTTGGGAA---TGG-----------G---GCCC-------TTC----------AAC---GGCTC----------CATT---TACAGAGAAT----TGAGGGCCC
gi|10 : AGGGCCCTCA-CACAACCTTTTTGGAATG------GGGCCC-G------TGGGGGC-------CTTTCAAAT--TTGG--AAAA-----TTA--C---CAT--TATT----------------ATT--GGG-AAAAA-CAACATTC-AC-AAAA-A------------C-----TCAATCAAATTTTGCTTT---TCTAT--T-G-TTTGGTTT--TC-AATT----C-ATTTATGGTTT----TG--AATAC--------ACAGAACT-TCAACATGTGTACA----G-T--AAGTT--TATTTTGA---A-TATCCAAAAATCTGTCCT-TAATGTT
gi|13 : AGGACTCTTACTGCCACTTTTAAGGAATG------GTGCCAGG------G-----C-------CTTTCAAAG--TGCGTTAAAA-----TTC--C---AGT--TATAT-TGG-AATA------ATG--GGG-GAAAATCAACATTC-AC-AAAT-A------------C-----TT-GTCAAATTTTGCT-T---TAAAT--TAG-GTATG--T--TC-AATT----GAATGTATGGTT
gi|20 : accacacacattatagcacaggacAGGGCTCTCA-CACCACTTTTGGGGAATG------GGGCT--G------
gi|2 : cCTCTCA-CACCACTGTTAGAGAATG------GGGCC--GGAGCCGT-----T-------CAA----AA--TGAG--AAA------TTA--C---CAT--TATTT-TGAGAAAA------ATT--GAG-A-----TAACATTC-ATTAAAA-A------------AAAAAATC-ATCAAATTTCTCTTT---TCTAT--T-G-TCTTGTTT--TC-AATT----C-AATAATGGTTT----TG--GATAC--------AAA----T-A--AC------ACA----G-C--TAGTT--TATTTTAA---A-TATCCAAAAATCTGTCCT-TACTGTTCAAGAAAT--GCTC--TAAGATTTTTC--AAT-A-GG--A--ATT-GGAAAAATTAC-ACTTTT---AAA----AT--GGGGA--AAA-G--ATTTTTTTTTTTTCC-A-TTTAGGAA---TGG-----------G---GCCA-------TTC----------AACTTGGGCTC------------TTGA-TACAGAAAAT----CAAGAGCCCgggccgttcaaaatgggaaaaaaggtacctttttccaattgggaatagga
gi|4 : CTCTCA-CACTACTTTTTGGTACTGTAGCCAGGGCC--G------T-----T-------C------AAATTGGT--AAAA-----TTA--C---CAT--TATAT-T---------------T--GGG-AAAAA-CAACATTC-ACAAAAC-A------------C-----TT-ATCAATTTTTGCTTT---TCTAT--T-GCTTTTGTTT--TC-AATT----T-ATTTA------------------C--------ACA----T-A--AC------ACA----G-T--AAGTT--TATTCTAA---A-TATCCAAAAATCTGTCCT-TAATGTACATGAAAT--GCTCA-AAAAAAATTTC-GATA-T-GAGAA--AAT-GG--AAATCCA-A----------------TTGGGGAA--AAATA--GT-----TTTC---C-A-TTTGGGAA---CAT-----------G---GCAG-------TTT----------AAC---GGCCC----------CATTTAGTATAGATAAT----CGAGAGCCCt
gi|5 : gctctCTCTCA-CACCACTTTTTGAGAATG------GGGCT--G------T-----TGGGGCCATTCA---AAT-TGGT--AAAA-----TTC--CATGCACAGTAATT-TGGGGAAA------ATT--GGGAAAAAA-CAATGTTC-AC--CAA-A----------------------TTAAAtg
gi|6 : CA-CACAACTCTTTGGGAATG------GGGCT--GGGGC--C-----A-------TTCA---AA--TTGG--AAAA-----TTG--C---CGT--TATTT-TGGG------------T--G----AAAA-CAACATTC-ATAGAAA-A------------C-----TC-ATAAAATTTTGCTTT---TCTCT--T-G-TTTTGTTT--TC------------------GTTT----TG--GATAC--------ACA----T------------ACA----G-T--AAGTT--TATTTTAG---A-TATTCAAAAA-------------ATTCATAAAAT--GCTC--CAAGATTTCTC-GATA-A-TAGAA--ATT-GGGAATATTCC-ATTTTT---AAA----TTGGGGAAA--AAA-G--GTACCTTTTTC---C-A-GTTGAGAA---TGG-----------G---GCCG-------TTCTACGGCCCAGAAC---GGCCC----------CATT---TATAGAGAAT----CAAGAGTCaataaaaacaaaaacaaaaaaaaacctaaccaaattttgcttttctgttgttttgtttcttaatgttcataaaatgctccaaacaattttgataagggaaatttgggaaagttggggaataaaaggtaccttcttccatattgggaacagggccattcaatggtcccatttcatggcatttatagaggatcaagagccctg
gi|7 : ACCACTTTTGGGGACTG------GGGCC--G--------------------ATCA---AA--TTGG--GAAA-----TTTAGC---GGC---ATAT-TGGGGAAA------ATT--GGG-ACATC-CAACATT---TTAAAA-AAAG---------C-----TC-A-AAAAATTTGGTTT---TCTAG--A-G-AATTGTTA--TC-AATT-------TTTG-----T----TGACAATAC--------ACA------T--AC------ATA----A-T--ttg
gi|1 : cttaatgc--TGGG--AAAA-----TT---C---CAC--T--TC-T-----AA------ATT--GGG-AAAAA-gtcatatgtatataacaaacgtgcagttgttttagattttgggggaaattcacactactcttgggaaaaagggtacttttttttgcattgggaacggggccgttcaacgaccccaattatatagaattgccagtcct
gi|5 : agaaatgaaaataccttaagattaactgtaattataacaaccagcaaaggggccggagtcgttcaaattgagaaaattagttatttgggggaaaacaacattcaccaaaaaaaaaaaaaaaacctcatcaaattttgcttttctattgttttgatttcgaattcagttacttatggtttaatttggatactagctgtgacataacacacttagtctaactttatatcaaatatctaaacattcgggaaatatgctccaagagttttgatatatgggaaat--TGGG--AAAAAACAATGT--T---CAC--CAAAT-T---AAAA------AT-------AAAAA-CAAAA----ACAAAAA-AAAAC--------C-----TA-ACCAAATTTTGCTTT---TCTGT--T-G-TTTTGTTTC-TT-AATggtaacttttgtctagtgggaatggggtagttcatttgccccatttctggagaatcaagggccctg
gi|16 : ctctcacaccactttttgagaatggggctgttggggccattcaaattggtaaaattccatgcacagtaatttggggaaaatGGG--AAAA--------------CA---TACTGATGGGGAAA------ATT--GGA-GAGAA-TCACCTTC-ACAAAAA-A------------C-----TC-ATCAAATTTTGCTCT---TCTAT--T-G-TTTTGTTT--TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACA----T-A--AC------ACA----ACC--AAATT--GATTTgttcataaaatgctccaaacaattttgataagggaaatttgggaaagttggggaataaaaggtaccttcttccatattgggaacagggccattcaatggtcccatttcatggcatttatagaggatcaagagccctg
gi|1 : T-TGAGAAAATTAGTTATTTGGGG-GAAAA-CAACATTC-ACCAAAA-AAAAAAAAAAAACC-----TC-ATCAAATTTTGCTTT---TCTAT--T-G-TTTTGATT--TCGAATTCAGTT-ACTTATGGTTTAATTTG--GATACTAGCTGTGACA----T-A--AC------ACACTTAG-TCTAACTT--TATATCAA---A-TATCTAAACAT--------------TCGGGAAATATGCTC--CAAGAG-TTTT-GATATATGGGAA--ATT-GGGAAAATTCC-ACTTCT---AAA----TT--GGGAA--AAA-G--GTAACTTTTGT---CTA-GT-GGGAA---TGG-----------G---GTAG-------TTC----------ATT---TGCCC----------CATT---TCTGGAGAAT----CAAGGGCCCggtggatcaaa
gi|12 : agaaatgaaaataccttaagattaactgtaattataacaaccagcaaaggggccggagtcgttcaaaA-CAACATTC-AC-ATAACA------------C-----CC-ATGAAATTTTGCTTTAAATTTGTATT-G-TTTTGTTT--TC-AGTT----T-tg
gi|15 : AACATTC-AC-AAAA-A------------C-----TC-ATCAAATTTTGGTTT---TCTAT--G-G-CTTTGTTT--TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACA----A-A--AC------ACA----G-T--AAGTT--TATCTT-A---A-TATCCAAAAATCCGTCCT-GAATGTNNNNNNNNN--NNNN--NNNNNNNNNNN-NNNN-N-NNNNNCTATT--GGAAAATTtgttaacgaaaattgagaaaattccactttcaaaagggggtgggggatgggagtacctatttcctgttgggagtgaggttgttaaacggccccatttatcaagaatcgagagccct
gi|8 : AACATTTTAATAAAA-G------------C-----TT-AACAAATTTGGTT-T---TCTAG--A-G-ATTTGTTA--TC-AATT----T------TGGTTT----AC--AATAC--------ACA----TAT--A-------ACAAAC-G-G--CAGTTCTTGTTTTGATTTA-TGTGTA------TGTTTTGTTTTGTT--TTAAAT--ATT----------TTTCTGCA-----GAAA--ATT-GGAGAAATTCACACTTCT---CAG----TTAGGAAGA--AAA-G--GTACCTTTTTTG--C-A--TTTGGAA---CGG-----------G---GCTG-------TTC----------AAC---AGCCC----------TAAT---TATAGAGAAC----CGAGAGCCCa
gi|14 : ctAAGTTTT--TGT---T-TGT--T-T-TTTTCTTTCTTC-AATT----T-ATGTATGGTTT----TG--GATAC--------ACA----T-A--AC------ACA----G-T--AAGTT--TATTTTGA---A-TATCCAAAAATCTGTCCT-TAATGTTCATGAAAT--GCTC--TAAAAATTTTC-AATA-T-AGGAA--ATTGGGGAAAATTCC-ACTTTT---AA------TTGGGCAA--AAA-G--Gtg
gi|9 : gaaTTTTGCTTT---TC-AT--C-G-TTTTGTAT--TC-AATT----T-AT----GGTTT----TG--GATAC--------ACA----T-A--TC------ACA----G-T--AAGTT--TATTTCAA---AATACCCAAAAATATGTCCT-TAATGTTCATGAAAT--GCTC--AAAAATATTTT-GATG-A-TGGAA--ATT-GAGAAAATTCC-ACTTC----------------------AAA-G--ATA-CTTTTTC---C-A-ATTGGGAA---CGG-----------G---GCTG-------TTC----------TAC---GGCCC----------CATT---TATAGAGAAT----CCAGAGCCC
gi|5 : caactttcaagaaataaaccttgTTCT-TAATGTTCATAAAAT--GCTC--CAAACAATTTT-GATA-A-GGGAA--ATTTGGGAAAGTT----------------------GGGGAATAAAA-G--GTACCTTCTTC---C-ATATTGGGAA---CAG-----------G---GCCA-------TTC----------AAT---GGTCCCATTTCATGGCATT---TATAGAGGAT----CAAGAGCCCt
gi|17 : ctctcacaccactttttgagaatggggctgttggggccattcaaattggtaaaattccatgcacagtaatttggggaaaattgggaaaaaacaatgttcaccaaattaaaaataaaaacaaaaacaaaaaaaaacctaaccaaattttgcttttctgttgttttgtCT-TAATGTTCATGAAAT--GCTCTGGAAAAAATC--------------A--AT------GAATTCA--TTTTT--------------GGGAA--AAG-G--GTTCCTTTTCT---C-A-ATTGGAAA---TGG-----------G---GCCC-------TTC----------AAT---GACCC----------CATT---TACAGAGAAT----TGAGAGCCCtg
gi|12 : A-A-CGAAA--ATT-GAGAAAATTCC-ACTTTC---AAAAGGGGGTGGGGGA--TGG-GA-GTACCTATTTC---C-T-GTTGGGAG---TGA-----------G---GTTG-------TTA----------AAC---GGCCC----------CATT---TATCAAGAAT----CGAGAGCCCtg
gi|19 : acaacattcacataacacccatgaaattttgctttaaatttgtattgttttgttttcagttttgttA-A-GGGAA--ACT-GGGAAAATTCC-ACTTTT---AA------TTGGAAAA--AAG-G--GTACCTTTTTC---C-A-ACTGGG-----------------------------------------------AAC---GGCCC----------CACT---TAAAGAGAAT----CAACAGCCCt
gi|7 : -GGGGAAATTCACACTACT----------CTTGGGAAA--AAG-G--GTACTTTTTTTTG-C-A--TTGGGAA---CGG-----------G---GCCG-------TTC----------AAC---GACCC----------CAAT---TATATAGAAT----TGtg
gi|11 : cttaatgcaccacttttggggactggggccgatcaaattgggaaatttagcggcatattggggaaaattgggacatccaacattttaaaaaaagctcaaaaaatttggttttctagagaattgttatcaatttttgttgacaatacacatacataatgtcatatgtatataacaaacgtgcagttgttttagattttgAAAATTCATATTTTTCTCATA----TT-GGGGAA--AAA-G--GTACCTTTTTT---ccagtcct
gi|18 : ctatcaattttggcttacatttacatatataacaaacatgcgtgtgttcttgttttttttttttttgtgtttggtcttgttttttttttttatgtttaattatgtgcgtgtttaaaaaaaaaaatttttttttgcaaTCC-ACTTTT---AAA----TTTG----A--AAA-GATGTAACTTTTCT-----A-ATTGGGAA---CGGGGTCGTTGAACG---GCCCGGGCCATTTC----------AGC---TGCCC----------CCTT---TATAGAGAAT----CGAGAGTCC
gi|20 : tcaAA----TT---GGAA--AAA-G--GTACCTTTTTTC--C-C-ATTTTGAA---C-------------G---GCCC----------------------C---AGCCC----------CATT---CCCCAAAAGTGGTGTGAGAGCCCtg
gi|20 : caTGGGAAA--AAA-G--GTACCTTTTTC---C-A-ATTGGGAA---TAG-----------G---gggaatagga
gi|21 : cagggctctcacaccacttttggggaatggggctggggccgttcaaaaA--AAA-G--ATACCTTTTTT---C-C-ATTGGGAACACTGGCCA--------T---GCCCCG-----TTC----------AAC---AACCC----------CCAT---AATAGAGAAT----CAAGAGCCCa
gi|22 : aA-G--ATACCTTTTTT---C-C-ATTGGGAACACTGG-----------CCATGCCCCG-----TTC----------AAC---AACCC----------CAAT---AATAGAGAAT----CAAGAGCCCt
gi|23 : TTGGGAA---TGG-----------G---GCCTTA-----TTT----------TAC---GGCCC----------CATT---CATA-AGAAT----TGAGAGCCtg
gi|17 : aAA---TGG-----------G---GTCA-------TTG----------AAG---GGCCC----------CATT---TCC----AAT----TGAG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): AGAGAGAGAATCAATTAGATCTGAAATTACA
Alignments
lowQualScore : 111111 111111 555555555555555555555555 11111 444444444444 22222222222222222 11111111 111111111111 1111 33333333333333 1111111111 1111111111 11111111111111
lowQualScore : 4 1 111111 111111 4 888888888888888888888888 8 777 88 4 1 4 55555 3 6666 0 4 0 3 88 333333333333 6 6 44444444444444444 3 66666 2 2 2 2 999999 2 2 7777 44 22222222 44 777777777777 44 3 77 3 3 3 0 1 0 3 44 8888 5555 3333 33 5 0 5 44444444444444 33 666666 66 9999 999 0000000000 444 5555 0000000000 33333333333333 777
lowQualScore : . . ...... ...... . ........................ . ... .. . . . ..... . .... . . . . .. ............ . . ................. . ..... . . . . ...... . . .... .. ........ .. ............ .. . .. . . . . . . . .. .... .... .... .. . . . .............. .. ...... .. .... ... .......... ... .... .......... .............. ...
lowQualScore : 4 0 555555 555555 0 999999999999999999999999 0 777 66 0 0 0 66666 7 1111 7 0 7 6 55 555555555555 2 2 66666666666666666 1 77777 7 7 7 7 000000 2 2 1111 66 11111111 66 111111111111 66 3 99 3 1 6 5 8 2 3 66 9999 6666 6666 99 7 9 3 77777777777777 11 555555 11 4444 999 3333333333 111 0000 3333333333 88888888888888 444
consensus : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAAT-TAC-CGT----TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTTTGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA-----TT-GGGGAA--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
Reference ( family-3087 ) : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAAT-TNC-CGC----TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTTTAAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA-----TTTGGGGAA--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
gi|1 : GGGGC------CG------GAGTC-G------T-------T-------C--AAA-TTG-AG--AAAAT-TA---GT----TATTTGGGGGAA-AA------------CAACATTC--ACCAAAAAAAAAAAA-AAA-ACC----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGATT-TCGAATTCAGTT-ACTTATGGTTTAATTTG--GATACTAGCTGTGACATA--AC------------A--CAC-TTAGTC--TAACTTTA---TATC-AAATATCTA-----AACATTCG-GGAAATATGCTC-C--AAG-AGTTTT-GATATATGGGAA--ATT-GGGAAAATTC-CACTTCT---AAA-----TT--GGGAA--AAAGGTAACTTTTGT---CT-AGTGGGAATG--GG----GTA--GTTC----------ATT---TGCC----C----------CA--------------TT---TCTGGAGAATCAAGGGCCC
gi|10 : agaaatgaaaataccttaagattaactgtaattataacaaccagcaaaAGGGCCCTCAC-ACAACCTTTTTGGAA------TG------GGGCCCG------TGGGGGCCT-------TTCAAA-T-TTGG--AAAAT-TAC-CAT----TATT----------ATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCAATCAAATTTTGCTTT-----TCTATT-G-TTTGGTTT-TC-AATT----C-ATTTATGGTTT----TG--AATAC--------ACAGA--ACTTCAACATGTGTA--CAG-TAAGTT--TA-TTTTGAA-TATCCAAAAATCTGTCCTTAATGTTtg
gi|11 : AAAATTCATATTTTTCTCATA-----TT-GGGGAA--AAAGGTACCTTTTTT---
gi|12 : ctatcaattttggcttacatttacatatataacaaacatgcgtgtgttcttgttttttttttttttgtgtttggtcttgttttttttttttatgtttaattatgtgcgtgtttaaaaaaaaaaatttttttttgcaaA-CAACATTC--AC------------ATAAC-AC-----------------CCA-TGAAATTTTGCTTTAAATTTGTATT-G-TTTTGTTT-TC-AGTT----T-
gi|12 : TTTTGTTA-A-CGAAA--ATT-GAGAAAATTC-CACTTTC---AAAAGGGGGTGGGGGAT--GGGAGTACCTATTTC---CT-GTTGGGAGTG--AG----GTT--GTTA----------AAC---GGCC----C----------CA--------------TT---TATCAAGAATCGAGAGCCCtgttaacgaaaattgagaaaattccactttcaaaagggggtgggggatgggagtacctatttcctgttgggagtgaggttgttaaacggccccatttatcaagaatcgagagccct
gi|13 : acaacattcacataacacccatgaaattttgctttaaatttgtattgttttgttttcagAGGACTCTTACTGCCACTTTTAAGGAA------TG------GTGCC-AGGGC--C-------T-------TTCAAAGT-G-CGTTAAAAT-TCC-AGT----TATATTGG--AATAATGGGG-GAAAATCAACATTC--AC------------A-AAT-AC-----------------TTG-TCAAATTTTGC-TT-----TAAATTAG-GTATG--T-TC-AATT----GAATGTATGGTTt
gi|14 : accacacacattatagcacaggacTTTTGTTTG-----TTT-TT-T-TCTT-TCT-TC-AATT----T-ATGTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTTTGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-T--AAA-AATTTTCAATA-T-AGGAA--ATTGGGGAAAATTC-CACTTTT---AA-------TTGGGCAA--AAAGG
gi|15 : gaaaagtAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGGTTT-----TCTATG-G-CTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACAAA--AC------------A--CAG-TAAGTT--TA-TCTT-AA-TATCCAAAAATCCGTCCTGAATGTNNN-NNNNNN--NNNN-N--NNN-NNNNNNNNNNN-N-NNNNNCTATT--GGAAAATT
gi|16 : -G-GG--AAAACATAC-TG------AT---GGGGAA-AATTGGA-GAGAA-TCACCTTC--AC------------A-AAAAAC-----------------TCA-TCAAATTTTGCTCT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAACCAAATT--GA-TTTa
gi|17 : CTTAATGTTCA-TGAAAT--GCTC-TGGAAA-AAAT--CAAT-----------------GAA---TT-CATTTTT---------------GGGAA--AAGGGTTCCTTTTCT---CA-ATTGGAAATG--GG----GCC--CTTC----------AAT---GACC----C----------CA--------------TT---TACAGAGAATTGAGAGCCCggtggatcaaa
gi|18 : TC-CACTTTT---AAA-----TTTGA--AA--AGATGTAACTTTTCT----A-ATTGGGAACG--GG----GTC--GTTG----------AAC---GGCCCGGGC----------CATTTCAGCTGCCCCCTT---TATAGAGAATCGAGAGTCCtg
gi|19 : tcaA-A-GGGAA--ACT-GGGAAAATTC-CACTTTT---AA-------TTGGAAAA--AAGGGTACCTTTTTC---CA-ACTGGGAACG--G--------------------------------CC----C----------CA--------------CT---TAAAGAGAATCAACAGCCCtg
gi|2 : CTCTCAC-ACCACTGTTAGAGAA------TG------GGGCC-GGAGCCGT-------T-------C-AAAA-T-G-AG--AAA-T-TAC-CAT----TATTTTGAGAAA-AATTGAG-A-----TAACATTC--ATTAAAAA------A-AAA-AA-----------------TCA-TCAAATTTCTCTTT-----TCTATT-G-TCTTGTTT-TC-AATT----C-AATAATGGTTT----TG--GATAC--------AAATA--AC------------A--CAG-CTAGTT--TA-TTTTAAA-TATCCAAAAATCTGTCCTTACTGTTCA-AGAAAT--GCTC-T--AAG-ATTTTTCAATA-----GGA--ATT-GGAAAAATTA-CACTTTT---AAA-----AT--GGGGA--AAAGATTTTTTTTTTTTCCA-TTTAGGAATG--GG----GCC--ATTC----------AACTTGGGCT----C--------------------------TTGA-TACAGAAAATCAAGAGCCCtg
gi|20 : AGGGCTCTCAC-ACCACTTTTGGGGAATGGGGCTG------GGGCC-G------T-------T-------C-AAAA-T-G-GG--AAAAt
gi|20 : cAA-----TT---GGAA--AAAGGTACCTTTTTTC--CC-ATTTTGAAC----G----GCC-----C------------C---AGCC----C----------CA--------------TT---aaggtacctttttccaattgggaatagga
gi|20 : cagggctctcacaccacttttggggTGGGAAA--AAAGGTACCTTTTTC---CA-ATTGGGAATA--GG----gggaatagga
gi|21 : cagggctctcacaccacttttggggaatggggctggggccgttcaaaaAA--AAAGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CC--------------AT---AATAGAGAATCAAGAGCCCa
gi|22 : AGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CA--------------AT---AATAGAGAATCAAGAGCCCt
gi|23 : -ATTGGGAATG--GG----GCCTTATTT----------TAC---GGCC----C----------CA--------------TT---CATA-AGAATTGAGAGCCtg
gi|3 : AGGGCTCTCAT-ACCACATTTTGGTAA------TG------GGGTT-G------T-------T-------CTCTAG-T-G-GG--AAAAT-TTC-CAC----TATTTTGGGAAA-AATTGGG-AAAAA-CAACATTC--ACT-----------A-CAA-AC-----------------TCG-TTAAATTTTCCTCT-----TCTGTT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATT--AC------------A--CAG-TAAGTT--TA-TTTCGAA-TATCCAAAAATCTGTCCTTATTGTTCA-TGAAAT--GCTC-G--AAA-AAATTTCGAAA-A-GGGAA--ATT-GGGAAAATTC-AACTTTT---AAA-----TTTGGGGGA--AAAGGTACCTCTTTT---CA-GTTGGGAATG--GG----GCC--CTTC----------AAC---GGCT----C----------CA--------------TT---TACAGAGAATTGAGGGCCC
gi|4 : CTCTCAC-ACTACTTTTTGGTAC------TGTAGCCAGGGCC-G------T-------T-------C--AAA-T-T-GGT-AAAAT-TAC-CAT----TATATT----------TGGG-AAAAA-CAACATTC--AC------------A-AAACAC-----------------TTA-TCAATTTTTGCTTT-----TCTATT-GCTTTTGTTT-TC-AATT----T-ATTTA------------------C--------ACATA--AC------------A--CAG-TAAGTT--TA-TTCTAAA-TATCCAAAAATCTGTCCTTAATGTACA-TGAAAT--GCTCAA--AAA-AAATTTCGATA-T-GAGAA--AAT-GGAAA---TC-CA--------A--------TTGGGGAA--AAA--TA--GTTTTC---CA-TTTGGGAACA--TG----GCA--GTTT----------AAC---GGCC----C----------CA--------------TTTAGTATAGATAATCGAGAGCCC
gi|5 : gctctCTCTCAC-ACCACTTTTTGAGAA------TG------GGGCT-G------T-------TGGGGCCATTCAAATT-G-GT--AAAAT-TCCATGCACAGTAATTTGGGGAA-AATTGGGAAAAAA-CAATGTTC--ACCAAATTAAAAATA-AAA-ACAAAAACAAAAAAAAACCTAA-CCAAATTTTGCTTT-----TCTGTT-G-TTTTGTTTCTT-AATtg
gi|5 : TTCTTAATGTTCA-TAAAAT--GCTC-C--AAA-CAATTTTGATA-A-GGGAA--ATTTGGGAAAGTT-----------------------GGGGAATAAAAGGTACCTTCTTC---CATATTGGGAACA--GG----GCC--ATTC----------AAT---GGTC----CCATTTCATGGCA--------------TT---TATAGAGGATCAAGAGCCCgttcataaaatgctccaaacaattttgataagggaaatttgggaaagttggggaataaaaggtaccttcttccatattgggaacagggccattcaatggtcccatttcatggcatttatagaggatcaagagccctg
gi|6 : ctctcacaccactttttgagaatggggctgttggggccattcaaattggtaaaattccatgcacagtaatttggggaaaattgggaaaaaacaatgttcaccaaattaaaaataaaaacaaaaacaaaaaaaaacctaaccaaattttgcttttctgttgttttgtCAC-ACAACTCTTTGGGAA------TG------GGGCT-GGGGC--C-------A-------TTCAAA-T-T-GG--AAAAT-TGC-CGT----TATTTTGGG-------TG----AAAA-CAACATTC--AT------------AGAAA-AC-----------------TCA-TAAAATTTTGCTTT-----TCTCTT-G-TTTTGTTT-TC------------------GTTT----TG--GATAC--------ACATA-------------------CAG-TAAGTT--TA-TTTTAGA-TATTCAAAAA------------ATTCA-TAAAAT--GCTC-C--AAG-ATTTCTCGATA-A-TAGAA--ATT-GGGAATATTC-CATTTTT---AAA-----TTGGGGAAA--AAAGGTACCTTTTTC---CA-GTTGAGAATG--GG----GCC--GTTCTACGGCCCAGAAC---GGCC----C----------CA--------------TT---TATAGAGAATCAAGAGTCtg
gi|7 : C-ACCACTTTTGGGGAC------TG------GGGCC-G----------------------ATCAAA-TTG-GG--AAATT-TAG-CGG----CATATTGGGGAA-AATTGGG-ACATC-CAACATTTTAAA------------A-AAA-GC-----------------TCA--AAAAATTTGGTTT-----TCTAGA-G-AATTGTTA-TC-AATT-------TTTG-----T----TGACAATAC--------ACAT---AC------------A--TAA-T--GTCA-TA-TGT---A-TAT--AACA----------AACGTGCAGT----T--GTTT-T--AGA----TTTTG----G-GGGAA--ATT-CACA-----C-TACTCTT--------------GGGAAA--AAGGGTACTTTTTTT---TGCATTGGGAACG--GG----GCC--GTTC----------AAC---GACC----C----------CA--------------AT---TATATAGAATTGCCAGTCCttg
gi|8 : cttaatgAACATTTTAAT------------A-AAA-GC-----------------TTA-ACAAATTTGG-TTT-----TCTAGA-G-ATTTGTTA-TC-AATT----T------TGGTTT----AC--AATAC--------ACATATAAC------------AAACGG-CA-GTTCTTG-TTTTGAT-T-T------ATGTGT-----ATGTTT--TGTTTT--GTTT-T--AAATATTTTTCTGCA----GAAA--ATT-GGAGAAATTCACACTTCT---CAG-----TTAGGAAGA--AAAGGTACCTTTTTT---GC-ATTTGGAACG--GG----GCT--GTTC----------AAC---AGCC----C----------TA--------------AT---TATAGAGAACCGAGAGCCCt
gi|9 : ctTTTTGCTTT-----TC-ATC-G-TTTTGTAT-TC-AATT----T-AT----GGTTT----TG--GATAC--------ACATA--TC------------A--CAG-TAAGTT--TA-TTTCAAAATACCCAAAAATATGTCCTTAATGTTCA-TGAAAT--GCTC-A--AAA-ATATTTTGATG-A-TGGAA--ATT-GAGAAAATTC-CACTTC-----------------------AAAGATA-CTTTTTC---CA-ATTGGGAACG--GG----GCT--GTTC----------TAC---GGCC----C----------CA--------------TT---TATAGAGAATCCAGAGCCCtg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGAGAGAGAATCAATTAGATCTGAAATTACA
Alignments
lowQualScore : 111111 111111 555555555555555555555555 111111 1111111111 444444444444 22222222222222222 11111111 111111111111 1111 222222222222 1111 11 1111111111 1111111111 11111111111111
lowQualScore : 4 1 111111 111111 4 888888888888888888888888 8 777 88 666 3 1 000000 1111111111 3 3 88 333333333333 6 6 44444444444444444 3 66666 2 2 2 2 999999 2 2 7777 44 22222222 44 777777777777 44 3 77 3 7777 3 1 1 0 3 44 8888 5555 3333 33 5 0 5 333333333333 55 2 33 0 555555 66 0000 00 0000000000 444 5555 0000000000 44444444444444 777
lowQualScore : . . ...... ...... . ........................ . ... .. ... . . ...... .......... . . .. ............ . . ................. . ..... . . . . ...... . . .... .. ........ .. ............ .. . .. . .... . . . . . .. .... .... .... .. . . . ............ .. . .. . ...... .. .... .. .......... ... .... .......... .............. ...
lowQualScore : 4 0 555555 555555 0 999999999999999999999999 0 777 66 444 6 4 555555 1111111111 6 6 55 555555555555 2 2 66666666666666666 1 77777 7 7 7 7 000000 2 2 1111 66 11111111 66 111111111111 66 3 99 3 9999 3 8 8 2 3 66 9999 6666 6666 99 7 9 3 000000000000 77 5 44 4 777777 99 6666 33 9999999999 444 3333 9999999999 77777777777777 888
consensus : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
Reference ( family-3087 ) : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
gi|1 : GGGGC------CG------GAGTC-G------T-------T-------C--AAA-TTG-AG--AAAA---T-TA--GT------TATTTGGGGGAA-AA------------CAACATTC--ACCAAAAAAAAAAAA-AAA-ACC----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGATT-TCGAATTCAGTT-ACTTATGGTTTAATTTG--GATACTAGCTGTGACATA--AC------------A--CAC-TTAGTC--TAACTT--T--A-TATC-AAATATCTA-----AACATTCG-GGAAATATGCTC-C--AAG-AGTTTT-GATATATGGGAA--ATT-GGGAAAATTC-CACTTCT---AAA------TTGGG--A-A--AAAGGTAACTTTTGT---CT-AGTGGGAATG--GG----GTA--GTTC----------ATT---TGCC----C----------CA--------------TT---TCTGGAGAATCAAGGGCCC
gi|10 : agaaatgaaaataccttaagattaactgtaattataacaaccagcaaaAGGGCCCTCAC-ACAACCTTTTTGGAA------TG------GGGCCCG------TGGGGGCCT-------TTCAAA-T-TTGG--AAAA---T-TACCAT------TATT----------ATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCAATCAAATTTTGCTTT-----TCTATT-G-TTTGGTTT-TC-AATT----C-ATTTATGGTTT----TG--AATAC--------ACAGA--ACTTCAACATGTGTA--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTtg
gi|11 : AAAATTCATATTTTTCTCATA------TTGGGG-A-A--AAAGGTACCTTTTTT---
gi|12 : ctatcaattttggcttacatttacatatataacaaacatgcgtgtgttcttgttttttttttttttgtgtttggtcttgttttttttttttatgtttaattatgtgcgtgtttaaaaaaaaaaatttttttttgcaaA-CAACATTC--AC------------ATAAC-AC-----------------CCA-TGAAATTTTGCTTTAAATTTGTATT-G-TTTTGTTT-TC-AGTT----T-
gi|12 : TTTTGTTA-A-CGAAA--ATT-GAGAAAATTC-CACTTTC---AAAAGGGGGTGGGGG-A-T--GGGAGTACCTATTTC---CT-GTTGGGAGTG--AG----GTT--GTTA----------AAC---GGCC----C----------CA--------------TT---TATCAAGAATCGAGAGCCCtgttaacgaaaattgagaaaattccactttcaaaagggggtgggggatgggagtacctatttcctgttgggagtgaggttgttaaacggccccatttatcaagaatcgagagccct
gi|13 : acaacattcacataacacccatgaaattttgctttaaatttgtattgttttgttttcagAGGACTCTTACTGCCACTTTTAAGGAA------TG------GTGCC-AGGGC--C-------T-------TTCAAAGT-G-CGTTAAAA---T-TCCAGT------TATATTGG--AATAATGGGG-GAAAATCAACATTC--AC------------A-AAT-AC-----------------TTG-TCAAATTTTGC-TT-----TAAATTAG-GTATG--T-TC-AATT----GAATGTATGGTTt
gi|14 : accacacacattatagcacaggacTTTTGTTTG-----TTT-TT-T-TCTT-TCT-TC-AATT----T-ATGTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-T--AAA-AATTTTCAATA-T-AGGAA--ATTGGGGAAAATTC-CACTTTT----AA------TTGGGC-A-A--AAAGG
gi|15 : gaaaagtAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGGTTT-----TCTATG-G-CTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACAAA--AC------------A--CAG-TAAGTT--TA-TCT--T-AA-TATCCAAAAATCCGTCCTGAATGTNNN-NNNNNN--NNNN-N--NNN-NNNNNNNNNNN-N-NNNNNCTATT--GGAAAATT
gi|16 : -G-GG--AAAA---CATACTG--------AT---GGGGAA-AATTGGA-GAGAA-TCACCTTC--AC------------A-AAAAAC-----------------TCA-TCAAATTTTGCTCT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAACCAAATT--GA-TTTGGTGGA-T---CAAAa
gi|17 : CTTAATGTTCA-TGAAAT--GCTC-TGGAAA-AAAT--CAAT-----------------GAA---TT-CATTTTT---------------GGG-A-A--AAGGGTTCCTTTTCT---CA-ATTGGAAATG--GG----GCC--CTTC----------AAT---GACC----C----------CA--------------TT---TACAGAGAATTGAGAGCCC
gi|18 : TC-CACTTTT---AAA------TTTGA--A-A--AGATGTAACTTTTCT----A-ATTGGGAACG--GG----GTC--GTTG----------AAC---GGCCCGGGC----------CATTTCAGCTGCCCCCTT---TATAGAGAATCGAGAGTCCtg
gi|19 : tcaA-A-GGGAA--ACT-GGGAAAATTC-CACTTTT---AA-------TTGGAA-A-A--AAGGGTACCTTTTTC---CA-ACTGGGAACG--G--------------------------------CC----C----------CA--------------CT---TAAAGAGAATCAACAGCCCtg
gi|2 : CTCTCAC-ACCACTGTTAGAGAA------TG------GGGCC-GGAGCCGT-------T-------C-AAAA-T-G-AG--AAA----T-TACCAT------TATTTTGAGAAA-AATTGAG-A-----TAACATTC--ATTAAAAA------A-AAA-AA-----------------TCA-TCAAATTTCTCTTT-----TCTATT-G-TCTTGTTT-TC-AATT----C-AATAATGGTTT----TG--GATAC--------AAATA--AC------------A--CAG-CTAGTT--TA-TTT--TAAA-TATCCAAAAATCTGTCCTTACTGTTCA-AGAAAT--GCTC-T--AAG-ATTTTTCAATA-----GGA--ATT-GGAAAAATTA-CACTTTT---AAA------ATGGGG---A--AAAGATTTTTTTTTTTTCCA-TTTAGGAATG--GG----GCC--ATTC----------AACTTGGGCT----C--------------------------TTGA-TACAGAAAATCAAGAGCCCtg
gi|20 : AGGGCTCTCAC-ACCACTTTTGGGGAATGGGGCTG------GGGCC-G------T-------T-------C-AAAA-T-G-GG--AAAAAAGG-TACCTT------T-TTCC-------AATTGGG-AAt
gi|21 : c-A-A--AAAGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CC--------------AT---AATAGAGAATCAAGAGCCCtagga
gi|22 : AGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CA--------------AT---AATAGAGAATCAAGAGCCCt
gi|23 : -ATTGGGAATG--GG----GCCTTATTT----------TAC---GGCC----C----------CA--------------TT---CATA-AGAATTGAGAGCCtg
gi|3 : AGGGCTCTCAT-ACCACATTTTGGTAA------TG------GGGTT-G------T-------T-------CTCTAG-T-G-GG--AAAA---T-TTCCAC------TATTTTGGGAAA-AATTGGG-AAAAA-CAACATTC--ACT-----------A-CAA-AC-----------------TCG-TTAAATTTTCCTCT-----TCTGTT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATT--AC------------A--CAG-TAAGTT--TA-TTT--CGAA-TATCCAAAAATCTGTCCTTATTGTTCA-TGAAAT--GCTC-G--AAA-AAATTTCGAAA-A-GGGAA--ATT-GGGAAAATTC-AACTTTT---AAAT-----TTGGGG-G-A--AAAGGTACCTCTTTT---CA-GTTGGGAATG--GG----GCC--CTTC----------AAC---GGCT----C----------CA--------------TT---TACAGAGAATTGAGGGCCC
gi|4 : CTCTCAC-ACTACTTTTTGGTAC------TGTAGCCAGGGCC-G------T-------T-------C--AAA-T-T-GGT-AAAA---T-TACCAT------TATATT----------TGGG-AAAAA-CAACATTC--AC------------A-AAACAC-----------------TTA-TCAATTTTTGCTTT-----TCTATT-GCTTTTGTTT-TC-AATT----T-ATTTA------------------C--------ACATA--AC------------A--CAG-TAAGTT--TA-TTC--TAAA-TATCCAAAAATCTGTCCTTAATGTACA-TGAAAT--GCTCAA--AAA-AAATTTCGATA-T-GAGAA--AAT-GGAAA---TC-C----------AA------TTGGGG-A-A--AAA--TA--GTTTTC---CA-TTTGGGAACA--TG----GCA--GTTT----------AAC---GGCC----C----------CA--------------TTTAGTATAGATAATCGAGAGCCC
gi|5 : gctctCTCTCAC-ACCACTTTTTGAGAA------TG------GGGCT-G------T-------TGGGGCCATTCAAATT-G-GT--AAAA---T-T-CCATGCACAGTAATTTGGGGAA-AATTGGGAAAAAA-CAATGTTC--ACCAAATTAAAAATA-AAA-ACAAAAACAAAAAAAAACCTAA-CCAAATTTTGCTTT-----TCTGTT-G-TTTTGTTTCTT-AATtg
gi|5 : TTCTTAATGTTCA-TAAAAT--GCTC-C--AAA-CAATTTTGATA-A-GGGAA--ATTTGGGAAAGTT-----------------------GGGG-A-ATAAAAGGTACCTTCTTC---CATATTGGGAACA--GG----GCC--ATTC----------AAT---GGTC----CCATTTCATGGCA--------------TT---TATAGAGGATCAAGAGCCCgttcataaaatgctccaaacaattttgataagggaaatttgggaaagttggggaataaaaggtaccttcttccatattgggaacagggccattcaatggtcccatttcatggcatttatagaggatcaagagccctg
gi|6 : ctctcacaccactttttgagaatggggctgttggggccattcaaattggtaaaattccatgcacagtaatttggggaaaattgggaaaaaacaatgttcaccaaattaaaaataaaaacaaaaacaaaaaaaaacctaaccaaattttgcttttctgttgttttgtCAC-ACAACTCTTTGGGAA------TG------GGGCT-GGGGC--C-------A-------TTCAAA-T-T-GG--AAAA---T-TGCCGT------TATTTTGGG-------TG----AAAA-CAACATTC--AT------------AGAAA-AC-----------------TCA-TAAAATTTTGCTTT-----TCTCTT-G-TTTTGTTT-TC------------------GTTT----TG--GATAC--------ACATA-------------------CAG-TAAGTT--TA-TTT--TAGA-TATTCAAAAA------------ATTCA-TAAAAT--GCTC-C--AAG-ATTTCTCGATA-A-TAGAA--ATT-GGGAATATTC-CATTTTT---AAA------TTGGGGAA-A--AAAGGTACCTTTTTC---CA-GTTGAGAATG--GG----GCC--GTTCTACGGCCCAGAAC---GGCC----C----------CA--------------TT---TATAGAGAATCAAGAGTCtg
gi|7 : C-ACCACTTTTGGGGAC------TG------GGGCC-G----------------------ATCAAA-TTG-GG--AAAT---T-TAGCGG------CATATTGGGGAA-AATTGGG-ACATC-CAACATTTTAAA------------A-AAA-GC-----------------TCA--AAAAATTTGGTTT-----TCTAGA-G-AATTGTTA-TC-AATT-------TTTG-----T----TGACAATAC--------ACAT---AC------------A--TAA-T--GTCA-TA-TGT-----A-TAT--AACA----------AACGTGCAGT----T--GTTT-T--AGA----TTTTG----G-GGGAA--ATT-CACA-----C-TACTCTT--------------GGGA-A-A--AAGGGTACTTTTTTT---TGCATTGGGAACG--GG----GCC--GTTC----------AAC---GACC----C----------CA--------------AT---TATATAGAATTGCCAGTCCttg
gi|8 : cttaatgAACATTTTAAT------------A-AAA-GC-----------------TTA-ACAAATTTGG-TTT-----TCTAGA-G-ATTTGTTA-TC-AATT----T------TGGTTT----AC--AATAC--------ACATATAAC------------AAACGG-CA-GTTCTTG-TTT--TGAT-T-T------ATGTGT-----ATGTTT--TGTTTT--GTTT-T--AAATATTTTTCTGCA----GAAA--ATT-GGAGAAATTCACACTTCT---CAG------TTAGGA-AGA--AAAGGTACCTTTTTT---GC-ATTTGGAACG--GG----GCT--GTTC----------AAC---AGCC----C----------TA--------------AT---TATAGAGAACCGAGAGCCCt
gi|9 : ctTTTTGCTTT-----TC-ATC-G-TTTTGTAT-TC-AATT----T-AT----GGTTT----TG--GATAC--------ACATA--TC------------A--CAG-TAAGTT--TA-TTT--CAAAATACCCAAAAATATGTCCTTAATGTTCA-TGAAAT--GCTC-A--AAA-ATATTTTGATG-A-TGGAA--ATT-GAGAAAATTC-CACTTC-------------------------AAAGATA-CTTTTTC---CA-ATTGGGAACG--GG----GCT--GTTC----------TAC---GGCC----C----------CA--------------TT---TATAGAGAATCCAGAGCCCtg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGAGAGAGAATCAATTAGATCTGAAATTACA
Alignments
lowQualScore : 111111 111111 555555555555555555555555 111111 1111111111 444444444444 22222222222222222 11111111 111111111111 1111 222222222222 1111 11 1111111111 1111111111 11111111111111
lowQualScore : 4 1 111111 111111 4 888888888888888888888888 8 777 88 666 3 1 000000 1111111111 3 3 88 333333333333 6 6 44444444444444444 3 66666 2 2 2 2 999999 2 2 7777 44 22222222 44 777777777777 44 3 77 3 7777 3 1 1 0 3 44 8888 5555 3333 33 5 0 5 333333333333 55 2 33 0 555555 66 0000 00 0000000000 444 5555 0000000000 44444444444444 777
lowQualScore : . . ...... ...... . ........................ . ... .. ... . . ...... .......... . . .. ............ . . ................. . ..... . . . . ...... . . .... .. ........ .. ............ .. . .. . .... . . . . . .. .... .... .... .. . . . ............ .. . .. . ...... .. .... .. .......... ... .... .......... .............. ...
lowQualScore : 4 0 555555 555555 0 999999999999999999999999 0 777 66 444 6 4 555555 1111111111 6 6 55 555555555555 2 2 66666666666666666 1 77777 7 7 7 7 000000 2 2 1111 66 11111111 66 111111111111 66 3 99 3 9999 3 8 8 2 3 66 9999 6666 6666 99 7 9 3 000000000000 77 5 44 4 777777 99 6666 33 9999999999 444 3333 9999999999 77777777777777 888
consensus : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
Reference ( family-3087 ) : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
gi|1 : GGGGC------CG------GAGTC-G------T-------T-------C--AAA-TTG-AG--AAAA---T-TA--GT------TATTTGGGGGAA-AA------------CAACATTC--ACCAAAAAAAAAAAA-AAA-ACC----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGATT-TCGAATTCAGTT-ACTTATGGTTTAATTTG--GATACTAGCTGTGACATA--AC------------A--CAC-TTAGTC--TAACTT--T--A-TATC-AAATATCTA-----AACATTCG-GGAAATATGCTC-C--AAG-AGTTTT-GATATATGGGAA--ATT-GGGAAAATTC-CACTTCT---AAA------TTGGG--A-A--AAAGGTAACTTTTGT---CT-AGTGGGAATG--GG----GTA--GTTC----------ATT---TGCC----C----------CA--------------TT---TCTGGAGAATCAAGGGCCC
gi|10 : agaaatgaaaataccttaagattaactgtaattataacaaccagcaaaAGGGCCCTCAC-ACAACCTTTTTGGAA------TG------GGGCCCG------TGGGGGCCT-------TTCAAA-T-TTGG--AAAA---T-TACCAT------TATT----------ATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCAATCAAATTTTGCTTT-----TCTATT-G-TTTGGTTT-TC-AATT----C-ATTTATGGTTT----TG--AATAC--------ACAGA--ACTTCAACATGTGTA--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTtg
gi|11 : AAAATTCATATTTTTCTCATA------TTGGGG-A-A--AAAGGTACCTTTTTT---
gi|12 : ctatcaattttggcttacatttacatatataacaaacatgcgtgtgttcttgttttttttttttttgtgtttggtcttgttttttttttttatgtttaattatgtgcgtgtttaaaaaaaaaaatttttttttgcaaA-CAACATTC--AC------------ATAAC-AC-----------------CCA-TGAAATTTTGCTTTAAATTTGTATT-G-TTTTGTTT-TC-AGTT----T-
gi|12 : TTTTGTTA-A-CGAAA--ATT-GAGAAAATTC-CACTTTC---AAAAGGGGGTGGGGG-A-T--GGGAGTACCTATTTC---CT-GTTGGGAGTG--AG----GTT--GTTA----------AAC---GGCC----C----------CA--------------TT---TATCAAGAATCGAGAGCCCtgttaacgaaaattgagaaaattccactttcaaaagggggtgggggatgggagtacctatttcctgttgggagtgaggttgttaaacggccccatttatcaagaatcgagagccct
gi|13 : acaacattcacataacacccatgaaattttgctttaaatttgtattgttttgttttcagAGGACTCTTACTGCCACTTTTAAGGAA------TG------GTGCC-AGGGC--C-------T-------TTCAAAGT-G-CGTTAAAA---T-TCCAGT------TATATTGG--AATAATGGGG-GAAAATCAACATTC--AC------------A-AAT-AC-----------------TTG-TCAAATTTTGC-TT-----TAAATTAG-GTATG--T-TC-AATT----GAATGTATGGTTt
gi|14 : accacacacattatagcacaggacTTTTGTTTG-----TTT-TT-T-TCTT-TCT-TC-AATT----T-ATGTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-T--AAA-AATTTTCAATA-T-AGGAA--ATTGGGGAAAATTC-CACTTTT----AA------TTGGGC-A-A--AAAGG
gi|15 : gaaaagtAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGGTTT-----TCTATG-G-CTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACAAA--AC------------A--CAG-TAAGTT--TA-TCT--T-AA-TATCCAAAAATCCGTCCTGAATGTNNN-NNNNNN--NNNN-N--NNN-NNNNNNNNNNN-N-NNNNNCTATT--GGAAAATT
gi|16 : -G-GG--AAAA---CATACTG--------AT---GGGGAA-AATTGGA-GAGAA-TCACCTTC--AC------------A-AAAAAC-----------------TCA-TCAAATTTTGCTCT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAACCAAATT--GA-TTTGGTGGA-T---CAAAa
gi|17 : CTTAATGTTCA-TGAAAT--GCTC-TGGAAA-AAAT--CAAT-----------------GAA---TT-CATTTTT---------------GGG-A-A--AAGGGTTCCTTTTCT---CA-ATTGGAAATG--GG----GCC--CTTC----------AAT---GACC----C----------CA--------------TT---TACAGAGAATTGAGAGCCC
gi|18 : TC-CACTTTT---AAA------TTTGA--A-A--AGATGTAACTTTTCT----A-ATTGGGAACG--GG----GTC--GTTG----------AAC---GGCCCGGGC----------CATTTCAGCTGCCCCCTT---TATAGAGAATCGAGAGTCCtg
gi|19 : tcaA-A-GGGAA--ACT-GGGAAAATTC-CACTTTT---AA-------TTGGAA-A-A--AAGGGTACCTTTTTC---CA-ACTGGGAACG--G--------------------------------CC----C----------CA--------------CT---TAAAGAGAATCAACAGCCCtg
gi|2 : CTCTCAC-ACCACTGTTAGAGAA------TG------GGGCC-GGAGCCGT-------T-------C-AAAA-T-G-AG--AAA----T-TACCAT------TATTTTGAGAAA-AATTGAG-A-----TAACATTC--ATTAAAAA------A-AAA-AA-----------------TCA-TCAAATTTCTCTTT-----TCTATT-G-TCTTGTTT-TC-AATT----C-AATAATGGTTT----TG--GATAC--------AAATA--AC------------A--CAG-CTAGTT--TA-TTT--TAAA-TATCCAAAAATCTGTCCTTACTGTTCA-AGAAAT--GCTC-T--AAG-ATTTTTCAATA-----GGA--ATT-GGAAAAATTA-CACTTTT---AAA------ATGGGG---A--AAAGATTTTTTTTTTTTCCA-TTTAGGAATG--GG----GCC--ATTC----------AACTTGGGCT----C--------------------------TTGA-TACAGAAAATCAAGAGCCCtg
gi|20 : AGGGCTCTCAC-ACCACTTTTGGGGAATGGGGCTG------GGGCC-G------T-------T-------C-AAAA-T-G-GG--AAAAAAGG-TACCTT------T-TTCC-------AATTGGG-AAt
gi|21 : c-A-A--AAAGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CC--------------AT---AATAGAGAATCAAGAGCCCtagga
gi|22 : AGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CA--------------AT---AATAGAGAATCAAGAGCCCt
gi|23 : -ATTGGGAATG--GG----GCCTTATTT----------TAC---GGCC----C----------CA--------------TT---CATA-AGAATTGAGAGCCtg
gi|3 : AGGGCTCTCAT-ACCACATTTTGGTAA------TG------GGGTT-G------T-------T-------CTCTAG-T-G-GG--AAAA---T-TTCCAC------TATTTTGGGAAA-AATTGGG-AAAAA-CAACATTC--ACT-----------A-CAA-AC-----------------TCG-TTAAATTTTCCTCT-----TCTGTT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATT--AC------------A--CAG-TAAGTT--TA-TTT--CGAA-TATCCAAAAATCTGTCCTTATTGTTCA-TGAAAT--GCTC-G--AAA-AAATTTCGAAA-A-GGGAA--ATT-GGGAAAATTC-AACTTTT---AAAT-----TTGGGG-G-A--AAAGGTACCTCTTTT---CA-GTTGGGAATG--GG----GCC--CTTC----------AAC---GGCT----C----------CA--------------TT---TACAGAGAATTGAGGGCCC
gi|4 : CTCTCAC-ACTACTTTTTGGTAC------TGTAGCCAGGGCC-G------T-------T-------C--AAA-T-T-GGT-AAAA---T-TACCAT------TATATT----------TGGG-AAAAA-CAACATTC--AC------------A-AAACAC-----------------TTA-TCAATTTTTGCTTT-----TCTATT-GCTTTTGTTT-TC-AATT----T-ATTTA------------------C--------ACATA--AC------------A--CAG-TAAGTT--TA-TTC--TAAA-TATCCAAAAATCTGTCCTTAATGTACA-TGAAAT--GCTCAA--AAA-AAATTTCGATA-T-GAGAA--AAT-GGAAA---TC-C----------AA------TTGGGG-A-A--AAA--TA--GTTTTC---CA-TTTGGGAACA--TG----GCA--GTTT----------AAC---GGCC----C----------CA--------------TTTAGTATAGATAATCGAGAGCCC
gi|5 : gctctCTCTCAC-ACCACTTTTTGAGAA------TG------GGGCT-G------T-------TGGGGCCATTCAAATT-G-GT--AAAA---T-T-CCATGCACAGTAATTTGGGGAA-AATTGGGAAAAAA-CAATGTTC--ACCAAATTAAAAATA-AAA-ACAAAAACAAAAAAAAACCTAA-CCAAATTTTGCTTT-----TCTGTT-G-TTTTGTTTCTT-AATtg
gi|5 : TTCTTAATGTTCA-TAAAAT--GCTC-C--AAA-CAATTTTGATA-A-GGGAA--ATTTGGGAAAGTT-----------------------GGGG-A-ATAAAAGGTACCTTCTTC---CATATTGGGAACA--GG----GCC--ATTC----------AAT---GGTC----CCATTTCATGGCA--------------TT---TATAGAGGATCAAGAGCCCgttcataaaatgctccaaacaattttgataagggaaatttgggaaagttggggaataaaaggtaccttcttccatattgggaacagggccattcaatggtcccatttcatggcatttatagaggatcaagagccctg
gi|6 : ctctcacaccactttttgagaatggggctgttggggccattcaaattggtaaaattccatgcacagtaatttggggaaaattgggaaaaaacaatgttcaccaaattaaaaataaaaacaaaaacaaaaaaaaacctaaccaaattttgcttttctgttgttttgtCAC-ACAACTCTTTGGGAA------TG------GGGCT-GGGGC--C-------A-------TTCAAA-T-T-GG--AAAA---T-TGCCGT------TATTTTGGG-------TG----AAAA-CAACATTC--AT------------AGAAA-AC-----------------TCA-TAAAATTTTGCTTT-----TCTCTT-G-TTTTGTTT-TC------------------GTTT----TG--GATAC--------ACATA-------------------CAG-TAAGTT--TA-TTT--TAGA-TATTCAAAAA------------ATTCA-TAAAAT--GCTC-C--AAG-ATTTCTCGATA-A-TAGAA--ATT-GGGAATATTC-CATTTTT---AAA------TTGGGGAA-A--AAAGGTACCTTTTTC---CA-GTTGAGAATG--GG----GCC--GTTCTACGGCCCAGAAC---GGCC----C----------CA--------------TT---TATAGAGAATCAAGAGTCtg
gi|7 : C-ACCACTTTTGGGGAC------TG------GGGCC-G----------------------ATCAAA-TTG-GG--AAAT---T-TAGCGG------CATATTGGGGAA-AATTGGG-ACATC-CAACATTTTAAA------------A-AAA-GC-----------------TCA--AAAAATTTGGTTT-----TCTAGA-G-AATTGTTA-TC-AATT-------TTTG-----T----TGACAATAC--------ACAT---AC------------A--TAA-T--GTCA-TA-TGT-----A-TAT--AACA----------AACGTGCAGT----T--GTTT-T--AGA----TTTTG----G-GGGAA--ATT-CACA-----C-TACTCTT--------------GGGA-A-A--AAGGGTACTTTTTTT---TGCATTGGGAACG--GG----GCC--GTTC----------AAC---GACC----C----------CA--------------AT---TATATAGAATTGCCAGTCCttg
gi|8 : cttaatgAACATTTTAAT------------A-AAA-GC-----------------TTA-ACAAATTTGG-TTT-----TCTAGA-G-ATTTGTTA-TC-AATT----T------TGGTTT----AC--AATAC--------ACATATAAC------------AAACGG-CA-GTTCTTG-TTT--TGAT-T-T------ATGTGT-----ATGTTT--TGTTTT--GTTT-T--AAATATTTTTCTGCA----GAAA--ATT-GGAGAAATTCACACTTCT---CAG------TTAGGA-AGA--AAAGGTACCTTTTTT---GC-ATTTGGAACG--GG----GCT--GTTC----------AAC---AGCC----C----------TA--------------AT---TATAGAGAACCGAGAGCCCt
gi|9 : ctTTTTGCTTT-----TC-ATC-G-TTTTGTAT-TC-AATT----T-AT----GGTTT----TG--GATAC--------ACATA--TC------------A--CAG-TAAGTT--TA-TTT--CAAAATACCCAAAAATATGTCCTTAATGTTCA-TGAAAT--GCTC-A--AAA-ATATTTTGATG-A-TGGAA--ATT-GAGAAAATTC-CACTTC-------------------------AAAGATA-CTTTTTC---CA-ATTGGGAACG--GG----GCT--GTTC----------TAC---GGCC----C----------CA--------------TT---TATAGAGAATCCAGAGCCCtg
blockSeqs : T A TGGGGC TAGCCA C TGGGGGCCTTT G TT TT AAG A A GCACAG TTTGAGAAA A T TA CAAATTAAAAAT T A AAAAACAAAAAAAAACC A AAATT A C C . GA T T . AC . TA TTCAACATGTGT AA C CT . GGTG A C C G . TGG TATT AC CT G A AAAAGGGGG GA G TA TTCCA CT CCAT CC TACGGCCCAG TTG CGGG CATTTCATGG TTTCAGCTGCCCCC TAG
blockSeqs : . A . . . TTGGGGCCATT T TG T . . C . TTTGGGAAA . . TA TAAAAA G C . . . . . . . C G T . . . . . . . A . TG . C C . . AA AAT TA . T A CTCATA G . . CAT CT CCAT CC . . . . . GA
blockSeqs : . G . . . GAGCCGTTC . G . . . A . TTTGGGGAA . . . T . . . . . . . . . T G T . . . . . . . . . TG . C C . . T NNN NN . . . AAAT G . . TGC . . TT . . . . . .
blockSeqs : . T . . . GGGCCTTT . G . . . A . ATTGGGGAA . . . . . . . . . . . . . T T T . . . . . . . . . TA . C C . . N AAA AG . . . AAA C . . CT . . . . . . . . .
blockSeqs : . T . . . GGGCCATT . G . . . A . ATTGGAAT . . . . . . . . . . . . . T T T . . . . . . . . . CG . C C . . T ATT AG . . . AAA G . . CA . . . . . . . . .
blockSeqs : . T . . . TTCT . G . . . T . GGGGAA . . . . . . . . . . . . . T T T . . . . . . . . . TA . C C . . G AAA TG . . . AAA A . . CA . . . . . . . . .
blockSeqs : . T . . . TTC . G . . . A . TTTGGG . . . . . . . . . . . . . C T T . . . . . . . . . TA . T T . . C AAA AG . . . CAG G . . CC . . . . . . . . .
blockSeqs : . G . . . TTC . T . . . G . TCC . . . . . . . . . . . . . T T T . . . . . . . . . TG . C C . . C CAA AT . . . AA G . . CC . . . . . . . . .
blockSeqs : . . . AT . G . . . A . ATT . . . . . . . . . . . . . T T . . . . . . . . . . CA . . . . . T ATT GG . . . AA G . . CA . . . . . . . . .
blockSeqs : T . . . . . T . . . . . . . . . . . . . T . . . . . . . . . . . T . . . . . T ATA AT . . . AA G . . CA . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . . . . . . . . . A . . . . . . A . . CA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . GC . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . CA . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : GGGCCTTT**************** G** ************ ***************** T***** **** ******** TG** ** AG** G*
originalCons : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-G------T-------T-------CTCAAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
finalCons : AGGGCTCTCAC-ACCACTTTTNGGGAA------TG------GGGCC-GGGGCCTTT----------------CAAA-TG--GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATTT-----ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTTTG--AA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATAAG--GGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGAGAGAGAATCAATTAGATCTGAAATTACA
Alignments
lowQualScore : 11111111 1 111111 1111111111 444444444444 22222222222222222 11111111 111111111111 1111 222222222222 1111 11 1111111111 1111111111 11111111111111
lowQualScore : 4 1 11111111 0 8 4 2 777 88 666 3 1 000000 1111111111 3 3 88 333333333333 6 6 44444444444444444 3 66666 2 2 2 2 999999 2 2 7777 44 22222222 555 777777777777 44 3 77 3 7777 3 1 1 0 3 44 8888 5555 3333 33 5 0 5 333333333333 55 2 33 0 555555 66 0000 00 0000000000 444 5555 0000000000 44444444444444 777
lowQualScore : . . ........ . . . . ... .. ... . . ...... .......... . . .. ............ . . ................. . ..... . . . . ...... . . .... .. ........ ... ............ .. . .. . .... . . . . . .. .... .... .... .. . . . ............ .. . .. . ...... .. .... .. .......... ... .... .......... .............. ...
lowQualScore : 4 0 99999999 7 2 0 0 777 66 444 6 4 555555 1111111111 6 6 55 555555555555 2 2 66666666666666666 1 77777 7 7 7 7 000000 2 2 1111 66 11111111 999 111111111111 66 3 99 3 9999 3 8 8 2 3 66 9999 6666 6666 99 7 9 3 000000000000 77 5 44 4 777777 99 6666 33 9999999999 444 3333 9999999999 77777777777777 888
consensus : AGGGCTCTCAC-ACCACTTTTNGGGAATGGGGC---C----GGGGCCGTTC-AAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
Reference ( family-3087 ) : AGGGCTCTCAC-ACCACTTTTNGGGAATGGGGC---C----GGGGCCTTTC-AAA-T-G-GG--AAAA---T-TACCGT------TATTTTGGGGAA-AATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-N--AAA-ANNTTTCGATA-A-GGGAA--ATT-GGGAAAATTC-CACTTTT---AAA------TTGGGG-A-A--AAAGGTACCTTTTTT---CA-ATTGGGAACG--GG----GCC--GTTC----------AAC---GGCC----C----------CA--------------TT---TATAGAGAATCGAGAGCCC
gi|1 : AAAGGGGC---C----GGAGTCGTTC-AAA-TTG-AG--AAAA---T-TA--GT------TATTTGGGGGAA-AA------------CAACATTC--ACCAAAAAAAAAAAA-AAA-ACC----------------TCA-TCAAATTTTGCTTT-----TCTATT-G-TTTTGATT-TCGAATTCAGTT-ACTTATGGTTTAATTTG--GATACTAGCTGTGACATA--AC------------A--CAC-TTAGTC--TAACTT--T--A-TATC-AAATATCTA-----AACATTCG-GGAAATATGCTC-C--AAG-AGTTTT-GATATATGGGAA--ATT-GGGAAAATTC-CACTTCT---AAA------TTGGG--A-A--AAAGGTAACTTTTGT---CT-AGTGGGAATG--GG----GTA--GTTC----------ATT---TGCC----C----------CA--------------TT---TCTGGAGAATCAAGGGCCC
gi|10 : agaaatgaaaataccttaagattaactgtaattataacaaccagcAGGGCCCTCAC-ACAACCTTTTTGGAATGGGGC---CCGTGGGGGCCTTTC-AAA-T-TTGG--AAAA---T-TACCAT------TATT----------ATTGGG-AAAAA-CAACATTC--AC------------A-AAA-AC-----------------TCAATCAAATTTTGCTTT-----TCTATT-G-TTTGGTTT-TC-AATT----C-ATTTATGGTTT----TG--AATAC--------ACAGA--ACTTCAACATGTGTA--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTtg
gi|11 : AAAATTCATATTTTTCTCATA------TTGGGG-A-A--AAAGGTACCTTTTTT---
gi|12 : ctatcaattttggcttacatttacatatataacaaacatgcgtgtgttcttgttttttttttttttgtgtttggtcttgttttttttttttatgtttaattatgtgcgtgtttaaaaaaaaaaatttttttttgcaaA-CAACATTC--AC------------ATAAC-AC-----------------CCA-TGAAATTTTGCTTTAAATTTGTATT-G-TTTTGTTT-TC-AGTT----T-
gi|12 : TTTTGTTA-A-CGAAA--ATT-GAGAAAATTC-CACTTTC---AAAAGGGGGTGGGGG-A-T--GGGAGTACCTATTTC---CT-GTTGGGAGTG--AG----GTT--GTTA----------AAC---GGCC----C----------CA--------------TT---TATCAAGAATCGAGAGCCCtgttaacgaaaattgagaaaattccactttcaaaagggggtgggggatgggagtacctatttcctgttgggagtgaggttgttaaacggccccatttatcaagaatcgagagccct
gi|13 : acaacattcacataacacccatgaaattttgctttaaatttgtattgttttgttttcagAGGACTCTTACTGCCACTTTTAAGGAATGGTGC---C----AGGGCCTTTC-AAAGT-G-CGTTAAAA---T-TCCAGT------TATATTGG--AATAATGGGG-GAAAATCAACATTC--AC------------A-AAT-AC-----------------TTG-TCAAATTTTGC-TT-----TAAATTAG-GTATG--T-TC-AATT----GAATGTATGGTTt
gi|14 : accacacacattatagcacaggacTTTTGTTTG-----TTT-TT-T-TCTT-TCT-TC-AATT----T-ATGTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAG-TAAGTT--TA-TTT--TGAA-TATCCAAAAATCTGTCCTTAATGTTCA-TGAAAT--GCTC-T--AAA-AATTTTCAATA-T-AGGAA--ATTGGGGAAAATTC-CACTTTT----AA------TTGGGC-A-A--AAAGG
gi|15 : gaaaagtAACATTC--AC------------A-AAA-AC-----------------TCA-TCAAATTTTGGTTT-----TCTATG-G-CTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACAAA--AC------------A--CAG-TAAGTT--TA-TCT--T-AA-TATCCAAAAATCCGTCCTGAATGTNNN-NNNNNN--NNNN-N--NNN-NNNNNNNNNNN-N-NNNNNCTATT--GGAAAATT
gi|16 : -G-GG--AAAA---CATACTG--------AT---GGGGAA-AATTGGA-GAGAA-TCACCTTC--AC------------A-AAAAAC-----------------TCA-TCAAATTTTGCTCT-----TCTATT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATA--AC------------A--CAACCAAATT--GA-TTTGGTGGA-T---CAAAa
gi|17 : CTTAATGTTCA-TGAAAT--GCTC-TGGAAA-AAAT--CAAT-----------------GAA---TT-CATTTTT---------------GGG-A-A--AAGGGTTCCTTTTCT---CA-ATTGGAAATG--GG----GCC--CTTC----------AAT---GACC----C----------CA--------------TT---TACAGAGAATTGAGAGCCC
gi|18 : TC-CACTTTT---AAA------TTTGA--A-A--AGATGTAACTTTTCT----A-ATTGGGAACG--GG----GTC--GTTG----------AAC---GGCCCGGGC----------CATTTCAGCTGCCCCCTT---TATAGAGAATCGAGAGTCCtg
gi|19 : tcaA-A-GGGAA--ACT-GGGAAAATTC-CACTTTT---AA-------TTGGAA-A-A--AAGGGTACCTTTTTC---CA-ACTGGGAACG--G--------------------------------CC----C----------CA--------------CT---TAAAGAGAATCAACAGCCCtg
gi|2 : CTCTCAC-ACCACTGTTAGAGAATGGGGC---C----GGAGCCGTTC-AAAAT-G-AG--AAA----T-TACCAT------TATTTTGAGAAA-AATTGAG-A-----TAACATTC--ATTAAAAA------A-AAA-AA-----------------TCA-TCAAATTTCTCTTT-----TCTATT-G-TCTTGTTT-TC-AATT----C-AATAATGGTTT----TG--GATAC--------AAATA--AC------------A--CAG-CTAGTT--TA-TTT--TAAA-TATCCAAAAATCTGTCCTTACTGTTCA-AGAAAT--GCTC-T--AAG-ATTTTTCAATA-----GGA--ATT-GGAAAAATTA-CACTTTT---AAA------ATGGGG---A--AAAGATTTTTTTTTTTTCCA-TTTAGGAATG--GG----GCC--ATTC----------AACTTGGGCT----C--------------------------TTGA-TACAGAAAATCAAGAGCCCtg
gi|20 : AGGGCTCTCAC-ACCACTTTTGGGGAATGGGGC---T----GGGGCCGTTCAAAA-T-G-GG--AAAAAAGG-TACCTT------T-TTCC-------AATTGGG-AAt
gi|21 : c-A-A--AAAGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CC--------------AT---AATAGAGAATCAAGAGCCCtagga
gi|22 : AGATACCTTTTTT---CC-ATTGGGAACACTGGCCATGCCCCGTTC----------AAC---AACC----C----------CA--------------AT---AATAGAGAATCAAGAGCCCt
gi|23 : -ATTGGGAATG--GG----GCCTTATTT----------TAC---GGCC----C----------CA--------------TT---CATA-AGAATTGAGAGCCtg
gi|3 : AGGGCTCTCAT-ACCACATTTTGGTAATGGGGT---T----G----TTCTC-TAG-T-G-GG--AAAA---T-TTCCAC------TATTTTGGGAAA-AATTGGG-AAAAA-CAACATTC--ACT-----------A-CAA-AC-----------------TCG-TTAAATTTTCCTCT-----TCTGTT-G-TTTTGTTT-TC-AATT----T-ATTTATGGTTT----TG--GATAC--------ACATT--AC------------A--CAG-TAAGTT--TA-TTT--CGAA-TATCCAAAAATCTGTCCTTATTGTTCA-TGAAAT--GCTC-G--AAA-AAATTTCGAAA-A-GGGAA--ATT-GGGAAAATTC-AACTTTT---AAAT-----TTGGGG-G-A--AAAGGTACCTCTTTT---CA-GTTGGGAATG--GG----GCC--CTTC----------AAC---GGCT----C----------CA--------------TT---TACAGAGAATTGAGGGCCC
gi|4 : CTCTCAC-ACTACTTTTTGGTACTGTAGC---C----AGGGCCGTTC-AAA-T-T-GGT-AAAA---T-TACCAT------TATATT----------TGGG-AAAAA-CAACATTC--AC------------A-AAACAC-----------------TTA-TCAATTTTTGCTTT-----TCTATT-GCTTTTGTTT-TC-AATT----T-ATTTA------------------C--------ACATA--AC------------A--CAG-TAAGTT--TA-TTC--TAAA-TATCCAAAAATCTGTCCTTAATGTACA-TGAAAT--GCTCAA--AAA-AAATTTCGATA-T-GAGAA--AAT-GGAAA---TC-C----------AA------TTGGGG-A-A--AAA--TA--GTTTTC---CA-TTTGGGAACA--TG----GCA--GTTT----------AAC---GGCC----C----------CA--------------TTTAGTATAGATAATCGAGAGCCC
gi|5 : gctctCTCTCAC-ACCACTTTTTGAGAATGGGGCTGTT----GGGGCCATTC-AAATT-G-GT--AAAA---T-T-CCATGCACAGTAATTTGGGGAA-AATTGGGAAAAAA-CAATGTTC--ACCAAATTAAAAATA-AAA-ACAAAAACAAAAAAAAACCTAA-CCAAATTTTGCTTT-----TCTGTT-G-TTTTGTTTCTT-AATtg
gi|5 : TTCTTAATGTTCA-TAAAAT--GCTC-C--AAA-CAATTTTGATA-A-GGGAA--ATTTGGGAAAGTT-----------------------GGGG-A-ATAAAAGGTACCTTCTTC---CATATTGGGAACA--GG----GCC--ATTC----------AAT---GGTC----CCATTTCATGGCA--------------TT---TATAGAGGATCAAGAGCCCgttcataaaatgctccaaacaattttgataagggaaatttgggaaagttggggaataaaaggtaccttcttccatattgggaacagggccattcaatggtcccatttcatggcatttatagaggatcaagagccctg
gi|6 : ctctcacaccactttttgagaatggggctgttggggccattcaaattggtaaaattccatgcacagtaatttggggaaaattgggaaaaaacaatgttcaccaaattaaaaataaaaacaaaaacaaaaaaaaacctaaccaaattttgcttttctgttgttttgtCAC-ACAACTCTTTGGGAATGGGGC---T----GGGGCCATTC-AAA-T-T-GG--AAAA---T-TGCCGT------TATTTTGGG-------TG----AAAA-CAACATTC--AT------------AGAAA-AC-----------------TCA-TAAAATTTTGCTTT-----TCTCTT-G-TTTTGTTT-TC------------------GTTT----TG--GATAC--------ACAT-----------------A--CAG-TAAGTT--TA-TTT--TAGA-TATTCAAAAA------------ATTCA-TAAAAT--GCTC-C--AAG-ATTTCTCGATA-A-TAGAA--ATT-GGGAATATTC-CATTTTT---AAA------TTGGGGAA-A--AAAGGTACCTTTTTC---CA-GTTGAGAATG--GG----GCC--GTTCTACGGCCCAGAAC---GGCC----C----------CA--------------TT---TATAGAGAATCAAGAGTCtg
gi|7 : C-ACCACTTTTGGGGACTGGGGC---C----GA------TC-AAA-TTG-GG--AAAT---T-TAGCGG------CATATTGGGGAA-AATTGGG-ACATC-CAACATTTTAAA------------A-AAA-GC-----------------TCA--AAAAATTTGGTTT-----TCTAGA-G-AATTGTTA-TC-AATT-------TTTG-----T----TGACAATAC--------ACAT---AC------------A--TAA-T--GTCA-TA-TGT-----A-TAT--AACA----------AACGTGCAGT----T--GTTT-T--AGA----TTTTG----G-GGGAA--ATT-CACA-----C-TACTCTT--------------GGGA-A-A--AAGGGTACTTTTTTT---TGCATTGGGAACG--GG----GCC--GTTC----------AAC---GACC----C----------CA--------------AT---TATATAGAATTGCCAGTCCttg
gi|8 : cttaatgAACATTTTAAT------------A-AAA-GC-----------------TTA-ACAAATTTGG-TTT-----TCTAGA-G-ATTTGTTA-TC-AATT----T------TGGTTT----AC--AATAC--------ACATATAAC------------AAACGG-CA-GTTCTTG-TTT--TGAT-T-T------ATGTGT-----ATGTTT--TGTTTT--GTTT-T--AAATATTTTTCTGCA----GAAA--ATT-GGAGAAATTCACACTTCT---CAG------TTAGGA-AGA--AAAGGTACCTTTTTT---GC-ATTTGGAACG--GG----GCT--GTTC----------AAC---AGCC----C----------TA--------------AT---TATAGAGAACCGAGAGCCCt
gi|9 : ctTTTTGCTTT-----TC-ATC-G-TTTTGTAT-TC-AATT----T-AT----GGTTT----TG--GATAC--------ACATA--TC------------A--CAG-TAAGTT--TA-TTT--CAAAATACCCAAAAATATGTCCTTAATGTTCA-TGAAAT--GCTC-A--AAA-ATATTTTGATG-A-TGGAA--ATT-GAGAAAATTC-CACTTC-------------------------AAAGATA-CTTTTTC---CA-ATTGGGAACG--GG----GCT--GTTC----------TAC---GGCC----C----------CA--------------TT---TATAGAGAATCCAGAGCCCtg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGAGAGAGAATCAATTAGATCTGAAATTACA