lowQualScore : 22 11 1 111 22222222222222 22222 5555555555555555555555 1 1
lowQualScore : 4 6 6 44 0 77 6 5 0 888 66 6 6 3 3 5555 222 2 2 5 55555555555555 2 2 2 444 2 444 11111 2 66 2 2 1 3 1 6666666666666666666666 66 5 0 2 8
lowQualScore : . . . .. . .. . . . ... .. . . . . .... ... . . . .............. . . . ... . ... ..... . .. . . . . . ...................... .. . . . .
lowQualScore : 7 7 0 55 2 33 7 0 5 888 99 5 6 3 1 5555 333 9 9 7 77777777777777 5 5 7 777 7 777 44444 7 33 7 9 4 3 0 9999999999999999999999 66 5 0 5 3
consensus : ACTAGANGTGTCGGTGCGACA-AGAATGCC-CCCGCCTACAG-TTAA---G--TCCAA-T-GAAG---GAAATCC-G-TA-A-GG-T--------------AAAA-T-TG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACTC---G--TT-CCT---AAAGANATCGGTNCAATATCTTGAAA-AGNATATATT
Reference ( gi|2 ) : ACTAGAAGTGTCGGTACGACG-AGAATGTC-CCCGCCTACAG-TTAA---G--TTCTA-T-GAAG---GAAATCC-C-TA-A-GG-T--------------AAAA-T-TG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AAGGTCA-ATTC--TA--TT-CCT---AAGGAAATCAGTTCAATATCTTGAAA-AGCATAAATTT
gi|8 : ACTAGATGTGTCGGTGCGACACAAAATG-C-CCCGC-TACAG-TGAA---G--TCTAA-T-GAAG---GAAATTC-A-TA-AGGG-T--------------AAAA-T-TG-AA---A-G-------------TTTTTT-AAA--T-GCA-
gi|4 : tacaACTAGAGTTATCG-TGCGAC--ACAAT--C-CCCGCCT-CGG-TTAA---GCCTCCAA-T-CGAG---GAAATCG-T----A-GG-T--------------TAAA-TCTG-GA---G-TGA---GTA--ACTTTTTTC-AAAA-T-CCA-AGAGTCA-ACTC--AG--TT-TCC---A
gi|19 : ACTAGAAGTGTTAGTGCGACA-AGAATGCC-TCCGTCGACAA-TTAA---
gi|1 : CGACA-CGTATGCCGCCCGCCTACAGTTTAA---G--TCCAA-T-GAAG-----AATCCTC-TT-A--G-T--------------AAAA-T-TG-GAACGA-GCA---GTATTT--TTTTTC-AAA--T-CC--AGGGCCA-ATTC--CAATTT-CAT---AAGG----TAG-------TCTTGATA-AGCAT
gi|3 : AATGCT-CTCACCTGCAG-GAAA---G--TCCAA-T-GAAG---GAATTCC-C-TA-G-GG-TTAAGTGATACCCAGAAAA-C-TG-AA---A-GCG---GTG--A--TTTATC-AAA--T-CCA-AGGATCA-ACTC--AA--TT-TCTATAAAACAAACCAGTTCAGTGTAGTGAAACATCAAAAATttatgacacatcagagaatatactgaatggcaatctgaacaaaaagcagtgtttcaccagtttaaagagaaacaaaatccaactga
gi|7 : AAT-TC-CCCGCTTA-AG-TAAA---G--TCC------AAA---AAAATCC-GGTA-A-GG-T--------------TAAA-T-AG-AA---AAGCA---GTA--T--GTTTTCAAAA--T-CCA-AGG--CATACTC---A--TTACCT---AA
gi|17 : gtcaatgcgaaccCCACCTACAG-TTGAAGAG--TTCAA-T-GAAG----AAATCC-C-TA-A-GGTT--------------AAAA-T-T
gi|5 : CACCTACAG-CTTT---G--T-CAA-TTGAAA---GAAATCC-T-TA-G-GT-T--------------TAAA-T-TGGAA---A-GCA---GTA-----TTTTTC-AAA--T-GCA-TAGGTTA-ACTCA-TA--TT-TC
gi|6 : aaacttagatgtgctcgatgcaaag--TTCTAAT-GAAGCAGGAAATGC-G-TA-A-GT-TTAA-----------AAAA-T-TG-AA---A-GC----GTG-----TTTTTC-AAAAATGCCG-AGGGTCA-GTT-----------------AAAATATCGGTGCAATATCTTG-AA-AGAATATATT
gi|12 : A-T-GAAG---GACATTC-A-GA-A-GG-T--------------AAAAAT-TG-AA---A-GCA---GTA--AT-TTTTTC-AAA--T-CCA-AGGGTCA-ata
gi|14 : tccaA-T-GACG---GAAATTT-G-TA-A-GG-TT-------------AAAA-T-TG-AA---A-GCA---GTAT-T--TTTTTT-AAA--T-CCA-AGGGTgct
gi|15 : a-T-GAAG---GAAATTC-G-TA-A-GGCT--------------AAAA-T-TG-AA---A-GCA---GTA--A--TTTTTC-AAT--T-CCA-AAGGTCA-Aaca
gi|13 : -T-GAAG---GAAATTC-G-TA-A-GG-C--------------AAAA-T-TG-AA---A-GCACAGGTA--AT-TTTTTC-AAT--T-CCACAAGGTCA-c
gi|18 : -GAAG---AAAATTT-G-TA-A-TG-TT-------------ACAA-T-TG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-ct
gi|10 : ATCG-C-TAGA-GC-T--------------AAAA-T-TG-AA---A-GAA---GTA--A--TAGTAT-AAG--G-CCA-AAGGTCC-ACTCAATG--TTACAT---AA-GAAATCAGTTCAATATCT
gi|11 : --------------AAAA-T-TG-AA---A-GCA---GTG--T--TTTTTC-AAA--T-CCG-AGGGTCA-GTT----------------AA--ATATCGGTACAATATCTTG-AA-AGAATATATT
gi|9 : taaAAA-T-TG-AA---A-GCA---GTC--A--TTTTTC-AAA--T-TCA-AGGGTCA-ACTC--AA--TT-TCatag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GCGTACTGAAATAGATAAAAGGCAGTTTTTCAAAGTTAAAGGGGCACAACTCCAACAG
Alignments
lowQualScore : 111111 22222222222222 11111 33333333333333 1
lowQualScore : 1 6 3 111111 6666 4 777 55 555 33 44 2 5 44444444444444 2 2 444 2 444 99999 2 55 2 2 33 33333333333333 55 3 1 0 1
lowQualScore : . . . ...... .... . ... .. ... .. .. . . .............. . . ... . ... ..... . .. . . .. .............. .. . . . .
lowQualScore : 0 7 7 222222 0000 4 888 55 000 99 11 7 3 11111111111111 4 5 444 5 444 55555 5 99 5 7 55 00000000000000 33 3 0 6 0
consensus : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACTC---GTT-CCT---AAAGAAATCGGTNCAATATCTTGAAAAGNATATATT
Reference ( family-3064 ) : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACTC---GTT-CCT---AAAGANATCGGTNCAATATCTTGAAAAGNATATATT
gi|1 : CGACA-CGTATGCCGCCCGCCTACAGTTTAA---G--TCCAATGAAG-----AATCCTCT-TA---G-T--------------AAAA-TTG-GAACGA-GCA---GTATTT--TTTTTC-AAA--T-CC--AGGGCCA-ATTCCAATTT-CAT---AA-------GGTA----GTCTTGATAAGCATTTAT
gi|10 : A-GC-T--------------AAAA-TTG-AA---A-GAA---GTA--A--TAGTAT-AAG--G-CCA-AAGGTCC-ACTCAATGTT-ACA---TAAGAAATCAGTTCAATATCTgacacatcagagaatatactgaatggcaatctgaacaaaaagcagtgtttcaccagtttaaagagaaacaaaatccaactga
gi|11 : atcgctag--------------AAAA-TTG-AA---A-GCA---GTG--T--TTTTTC-AAA--T-CCG-AGGGTCA--------GTT---------AAATATCGGTACAATATCTTG-AAAGAATATATT
gi|12 : taa--TCCAATGAAG---GACATT--CA-GAA-GG-T--------------AAAAATTG-AA---A-GCA---GTA--AT-TTTTTC-AAA--T-CCA-AGGGTCA-GCTatag
gi|13 : TGAAG---GAAATT--CG-TAA-GG-C--------------AAAA-TTG-AA---A-GCACAGGTA--AT-TTTTTC-AAT--T-CCACAAGGTCA-
gi|14 : AATGACG---GAAATT--TG-TAA-GG-TT-------------AAAA-TTG-AA---A-GCA---GTAT-T--TTTTTT-AAA--T-CCA-AGGGTct
gi|15 : TGAAG---GAAATT--CG-TAA-GGCT--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAT--T-CCA-AAGGTCA-ACaca
gi|17 : CCACCTACAGTT-GAAGAG--TTCAATGAA----GAAATC--CC-TAA-GGTT--------------AAAA-TT
gi|18 : GAAG---AAAATT--TG-TAA-TG-TT-------------ACAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-
gi|19 : ACTAGAAGTG-TTAGTGCGACA-AGAATGCC-TCCGTCGACAATT-AA---
gi|2 : ACTAGAAGTG-TCGGTACGACG-AGAATGTC-CCCGCCTACAGTT-AA---G--TTCTATGAAG---GAAATC--CC-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AAGGTCA-ATTCT--ATT-CCT---AAGGAAATCAGTTCAATATCTTGAAAAGCATAAATT
gi|3 : AATGCT-CTCACCTGCAGGA-AA---G--TCCAATGAAG---GAATTC--CC-TAG-GG-TTAAGTGATACCCAGAAAA-CTG-AA---A-GCG---GTG--A--TTTATC-AAA--T-CCA-AGGATCA-ACTCA--ATT-TCTATAAAACAAACCAGTTCAGTGTAGTGAAAt
gi|4 : ACTAGAGTTA-TCG-TGCGACA-C-AAT--C-CCCGCCT-CGGTT-AA---GCCTCCAATCGAG---GAAATC---G-TAG-GT-T--------------AAAT-CTG-GA---G-TGA---GTA--ACTTTTTTC-AAAA-T-CCA-AGAGTCA-ACTCA--GTT-TCC---Acatcaaaaat
gi|5 : TAGATGTGCTCGATGCAA---AG---------CACCTACAGCT-TT---G--TCAATTGAAA---GAAATC--CT-TAG-GT-T--------------TAAA-TTGGAA---A-GCA---GTA-----TTTTTC-AAA--T-GCA-TAGGTTA-ACTC---AT
gi|6 : aaact--TCTAATGAAGCAGGAAATG--CG-TAA-GT-TTAA-----------AAAA-TTG-AA---A-GC----GTG-----TTTTTC-AAAAATGCCG-AGGGTCA--------GTT--------AAAATATCGGTGCAATATCTTG-AAAGAATATATTatttc
gi|7 : tG-TCAATGCGA-A-CCAAT-TC-CCCGCTTA-AGTA-AA---G--TCCAA--AA-----AAATC--CGGTAA-GG-T--------------TAAA-TAG-AA---AAGCA---GTA--T--GTTTTCAAAA--T-CCA-AGG--CATACTC---ATTACCT---AAata
gi|8 : ACTAGATGTG-TCGGTGCGACACAAAATGCC-CC-GC-TACAGTG-AA---G--TCTAATGAAG---GAAATT--CA-TAAGGG-T--------------AAAA-TTG-AA---A-G-------------TTTTTT-AAA--T-GCA-
gi|9 : tacaAAA-TTG-AA---A-GCA---GTC--A--TTTTTC-AAA--T-TCA-AGGGTCA-ACTC---
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCGTACTGAAATAGATAAAAGGCAGTTTTTCAAAGTTAAAGGGGCACAACTCCAACAG
Alignments
lowQualScore : 111111 22222222222222 11111 33333333333333 1
lowQualScore : 1 6 3 111111 6666 4 777 55 555 33 44 2 5 44444444444444 2 2 444 2 444 99999 2 55 2 2 33 33333333333333 55 3 1 0 1
lowQualScore : . . . ...... .... . ... .. ... .. .. . . .............. . . ... . ... ..... . .. . . .. .............. .. . . . .
lowQualScore : 0 7 7 222222 0000 4 888 55 000 99 11 7 3 11111111111111 4 5 444 5 444 55555 5 99 5 7 55 00000000000000 33 7 0 6 0
consensus : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACTC---GTT-CCT---AAAGAAATCGGTNCAATATCTTGAAAAGNATATATT
Reference ( family-3064 ) : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACTC---GTT-CCT---AAAGAAATCGGTNCAATATCTTGAAAAGNATATATT
gi|1 : CGACA-CGTATGCCGCCCGCCTACAGTTTAA---G--TCCAATGAAG-----AATCCTCT-TA---G-T--------------AAAA-TTG-GAACGA-GCA---GTATTT--TTTTTC-AAA--T-CC--AGGGCCA-ATTCCAATTT-CAT---AA-------GGTA----GTCTTGATAAGCATTTAT
gi|10 : A-GC-T--------------AAAA-TTG-AA---A-GAA---GTA--A--TAGTAT-AAG--G-CCA-AAGGTCC-ACTCAATGTT-ACA---TAAGAAATCAGTTCAATATCTgacacatcagagaatatactgaatggcaatctgaacaaaaagcagtgtttcaccagtttaaagagaaacaaaatccaactga
gi|11 : atcgctag--------------AAAA-TTG-AA---A-GCA---GTG--T--TTTTTC-AAA--T-CCG-AGGGTCA--------GTT---------AAATATCGGTACAATATCTTG-AAAGAATATATT
gi|12 : taa--TCCAATGAAG---GACATT--CA-GAA-GG-T--------------AAAAATTG-AA---A-GCA---GTA--AT-TTTTTC-AAA--T-CCA-AGGGTCA-GCTatag
gi|13 : TGAAG---GAAATT--CG-TAA-GG-C--------------AAAA-TTG-AA---A-GCACAGGTA--AT-TTTTTC-AAT--T-CCACAAGGTCA-
gi|14 : AATGACG---GAAATT--TG-TAA-GG-TT-------------AAAA-TTG-AA---A-GCA---GTAT-T--TTTTTT-AAA--T-CCA-AGGGTct
gi|15 : TGAAG---GAAATT--CG-TAA-GGCT--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAT--T-CCA-AAGGTCA-ACaca
gi|17 : CCACCTACAGTT-GAAGAG--TTCAATGAA----GAAATC--CC-TAA-GGTT--------------AAAA-TT
gi|18 : GAAG---AAAATT--TG-TAA-TG-TT-------------ACAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-
gi|19 : ACTAGAAGTG-TTAGTGCGACA-AGAATGCC-TCCGTCGACAATT-AA---
gi|2 : ACTAGAAGTG-TCGGTACGACG-AGAATGTC-CCCGCCTACAGTT-AA---G--TTCTATGAAG---GAAATC--CC-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AAGGTCA-ATTCT--ATT-CCT---AAGGAAATCAGTTCAATATCTTGAAAAGCATAAATT
gi|3 : AATGCT-CTCACCTGCAGGA-AA---G--TCCAATGAAG---GAATTC--CC-TAG-GG-TTAAGTGATACCCAGAAAA-CTG-AA---A-GCG---GTG--A--TTTATC-AAA--T-CCA-AGGATCA-ACTCA--ATT-TCTATAAAACAAACCAGTTCAGTGTAGTGAAAt
gi|4 : ACTAGAGTTA-TCG-TGCGACA-C-AAT--C-CCCGCCT-CGGTT-AA---GCCTCCAATCGAG---GAAATC---G-TAG-GT-T--------------AAAT-CTG-GA---G-TGA---GTA--ACTTTTTTC-AAAA-T-CCA-AGAGTCA-ACTCA--GTT-TCC---Acatcaaaaat
gi|5 : TAGATGTGCTCGATGCAA---AG---------CACCTACAGCT-TT---G--TCAATTGAAA---GAAATC--CT-TAG-GT-T--------------TAAA-TTGGAA---A-GCA---GTA-----TTTTTC-AAA--T-GCA-TAGGTTA-ACTC---AT
gi|6 : aaact--TCTAATGAAGCAGGAAATG--CG-TAA-GT-TTAA-----------AAAA-TTG-AA---A-GC----GTG-----TTTTTC-AAAAATGCCG-AGGGTCA--------GTT--------AAAATATCGGTGCAATATCTTG-AAAGAATATATTatttc
gi|7 : tG-TCAATGCGA-A-CCAAT-TC-CCCGCTTA-AGTA-AA---G--TCCAA--AA-----AAATC--CGGTAA-GG-T--------------TAAA-TAG-AA---AAGCA---GTA--T--GTTTTCAAAA--T-CCA-AGG--CATACTC---ATTACCT---AAata
gi|8 : ACTAGATGTG-TCGGTGCGACACAAAATGCC-CC-GC-TACAGTG-AA---G--TCTAATGAAG---GAAATT--CA-TAAGGG-T--------------AAAA-TTG-AA---A-G-------------TTTTTT-AAA--T-GCA-
gi|9 : tacaAAA-TTG-AA---A-GCA---GTC--A--TTTTTC-AAA--T-TCA-AGGGTCA-ACTC---
blockSeqs : A C G CACAAA GCC . AGA CC CAG . GG G C TAAGTGATACCCAG A G . A CAG ACT A AA G C TA AATTTCTATAA AG A T A A
blockSeqs : G . A CAAGA GTC . . . . . A . T TAA . . . . . AT . A . . A AATGTTACAT AA T A A C
blockSeqs : T . A CGAGA GCT . . . . . G . . T . . . . . AT . . . . G TATTCCTA GG A T . A
blockSeqs : T . G CACA GCC . . . . . G . . T . . . . . TT . . . . A AGTTTCCA AC A T .
blockSeqs : . . ACCA TC . . . . . G . . . . . . . . A . . . . A ATTACCTA AA T G
blockSeqs : AG C . . . . . C . . . . . . . . T . . . . A GTT
blockSeqs : . . . . . . G . . . . . . . . A . . . . A GTT
blockSeqs : . . . . . C . . . . . . . . A . . . . A
blockSeqs : . . . C . . . . . . . . A . . . . A
blockSeqs : . . G . . . . . . . . A . . . . .
blockSeqs : . . T . . . . . . . . T . . . . .
blockSeqs : . . G . . . . . . . . A . . . .
blockSeqs : . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : .
blockSeqCons : GCC* ** *** A**** AATTCCTA****** AG
originalCons : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACTC---GTT-CCT---AAAGAAATCGGTNCAATATCTTGAAAAGNATATATT
finalCons : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTAA----TTTTTC-AAA--T-CCA-AGGGTCA-ACTCAATTCCTA------AAGAAATCGGTNCAATATCTTGAAAAGNATATATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCGTACTGAAATAGATAAAAGGCAGTTTTTCAAAGTTAAAGGGGCACAACTCCAACAG
Alignments
lowQualScore : 111111 22222222222222 11111 3333333333333333 1
lowQualScore : 1 6 3 111111 6666 4 777 55 555 33 44 2 5 44444444444444 2 2 444 2 444 99999 2 55 2 2 3 3 4 0000000000000000 1 0 1
lowQualScore : . . . ...... .... . ... .. ... .. .. . . .............. . . ... . ... ..... . .. . . . . . ................ . . .
lowQualScore : 0 7 7 222222 0000 4 888 55 000 99 11 7 3 11111111111111 4 5 444 5 444 55555 5 99 5 7 1 6 0 1111111111111111 0 6 0
consensus : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACT-CA-AT-TTC-T---A-AAGAAATCGGTNCAATATCTTGAAAAGNATATATT
Reference ( family-3064 ) : ACTAGANGTG-TCGGTGCGACA-AGAATGCC-CCCGCCTACAGTT-AA---G--TCCAATGAAG---GAAATC--CG-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AGGGTCA-ACT-CA-AT-TCC-T---A-AAGAAATCGGTNCAATATCTTGAAAAGNATATATT
gi|1 : CGACA-CGTATGCCGCCCGCCTACAGTTTAA---G--TCCAATGAAG-----AATCCTCT-TA---G-T--------------AAAA-TTG-GAACGA-GCA---GTATTT--TTTTTC-AAA--T-CC--AGGGCCA-ATTCCA-AT-TTCAT---A-A-------GGTA----GTCTTGATAAGCATTTAT
gi|10 : A-GC-T--------------AAAA-TTG-AA---A-GAA---GTA--A--TAGTAT-AAG--G-CCA-AAGGTCC-ACT-CA-ATGTTA-C---ATAAGAAATCAGTTCAATATCTgacacatcagagaatatactgaatggcaatctgaacaaaaagcagtgtttcaccagtttaaagagaaacaaaatccaactga
gi|11 : atcgctag--------------AAAA-TTG-AA---A-GCA---GTG--T--TTTTTC-AAA--T-CCG-AGGGTCA-GTT-AA-AT----------------ATCGGTACAATATCTTG-AAAGAATATATT
gi|12 : taa--TCCAATGAAG---GACATT--CA-GAA-GG-T--------------AAAAATTG-AA---A-GCA---GTA--AT-TTTTTC-AAA--T-CCA-AGGGTCA-GCT-atag
gi|13 : TGAAG---GAAATT--CG-TAA-GG-C--------------AAAA-TTG-AA---A-GCACAGGTA--AT-TTTTTC-AAT--T-CCACAAGGTCA-
gi|14 : AATGACG---GAAATT--TG-TAA-GG-TT-------------AAAA-TTG-AA---A-GCA---GTAT-T--TTTTTT-AAA--T-CCA-AGGGTct
gi|15 : TGAAG---GAAATT--CG-TAA-GGCT--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAT--T-CCA-AAGGTCA-ACaca
gi|17 : CCACCTACAGTT-GAAGAG--TTCAATGAA----GAAATC--CC-TAA-GGTT--------------AAAA-TT
gi|18 : GAAG---AAAATT--TG-TAA-TG-TT-------------ACAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-
gi|19 : ACTAGAAGTG-TTAGTGCGACA-AGAATGCC-TCCGTCGACAATT-AA---
gi|2 : ACTAGAAGTG-TCGGTACGACG-AGAATGTC-CCCGCCTACAGTT-AA---G--TTCTATGAAG---GAAATC--CC-TAA-GG-T--------------AAAA-TTG-AA---A-GCA---GTA--A--TTTTTC-AAA--T-CCA-AAGGTCA-ATT-CT-AT-TCC-T---A-AGGAAATCAGTTCAATATCTTGAAAAGCATAAATT
gi|3 : AATGCT-CTCACCTGCAGGA-AA---G--TCCAATGAAG---GAATTC--CC-TAG-GG-TTAAGTGATACCCAGAAAA-CTG-AA---A-GCG---GTG--A--TTTATC-AAA--T-CCA-AGGATCA-ACT-CA-AT-TTC-TATAA-AACAAACCAGTTCAGTGTAGTGAAAt
gi|4 : ACTAGAGTTA-TCG-TGCGACA-C-AAT--C-CCCGCCT-CGGTT-AA---GCCTCCAATCGAG---GAAATC---G-TAG-GT-T--------------AAAT-CTG-GA---G-TGA---GTA--ACTTTTTTC-AAAA-T-CCA-AGAGTCA-ACT-CA-GT-TTC-C---A-catcaaaaat
gi|5 : TAGATGTGCTCGATGCAA---AG---------CACCTACAGCT-TT---G--TCAATTGAAA---GAAATC--CT-TAG-GT-T--------------TAAA-TTGGAA---A-GCA---GTA-----TTTTTC-AAA--T-GCA-TAGGTTA-ACT-CATAT-TTC-
gi|6 : aaact--TCTAATGAAGCAGGAAATG--CG-TAA-GT-TTAA-----------AAAA-TTG-AA---A-GC----GTG-----TTTTTC-AAAAATGCCG-AGGGTCA-GTT-----------------AAAATATCGGTGCAATATCTTG-AAAGAATATATT
gi|7 : tG-TCAATGCGA-A-CCAAT-TC-CCCGCTTA-AGTA-AA---G--TCCAA--AA-----AAATC--CGGTAA-GG-T--------------TAAA-TAG-AA---AAGCA---GTA--T--GTTTTCAAAA--T-CCA-AGG--CATACT-CA-TT-ACC-T---A-Aata
gi|8 : ACTAGATGTG-TCGGTGCGACACAAAATGCC-CC-GC-TACAGTG-AA---G--TCTAATGAAG---GAAATT--CA-TAAGGG-T--------------AAAA-TTG-AA---A-G-------------TTTTTT-AAA--T-GCA-
gi|9 : tacaAAA-TTG-AA---A-GCA---GTC--A--TTTTTC-AAA--T-TCA-AGGGTCA-ACT-CA-AT-TTC-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCGTACTGAAATAGATAAAAGGCAGTTTTTCAAAGTTAAAGGGGCACAACTCCAACAG