lowQualScore : 2
lowQualScore : 11 88888 11 2222 22 1 1 22 11 2 33 222 33 1 1
lowQualScore : .. ..... .. .... .. . . .. .. . .. ... .. . .
lowQualScore : 77 55555 55 3333 55 1 1 66 55 2 11 222 11 0 3
consensus : GGATGTG--ATTT----TTCCTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTACT-CA---A--TTTTTGAAAA-AAATG
Reference ( gi|5 ) : GGATGTG--ATTT----CTCCTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTACT-CA---A--TTTATGAAAA-AAATG
gi|7 : GGGTGTG--ATTT----TTCCTC--G----TTTCA--G-A-GGAAATCC--TCC--GA-TTTACT-CA---A--TTTTTGAAAA-AA
gi|3 : gGGACATG--ATTT----TTACTC--T----TTTCA--G-A-GGAAATCC--TCT--AA-TTTACT-CA---A--TGTTTGAAAA-AAc
gi|4 : agGGATGTG--ATTT----TTCCTC--TCTCTTTTCA--G-A-GGAAATCC--TCT--AA-TTTACT-AA---A--ATTTTGAAAA-ta
gi|10 : GAATATG--ATTT----GTCCTC--T----TTTCA--A-A-AGAAATCC--TCA--GA-TTTACT-CA---A--TTTTTTAATA-AA
gi|6 : GGAT-TGGAACTC----TTCCTC--T----TTTCA--G-A-GGAAATCC--TCA--GA-TTTATT-AA---A--TTTTTGAAAA-AAt
gi|31 : GGATGTG--ATTT----TCCCCC--T----TTTCT--G-A-GGAAATCC--TCT--GA-TTTt
gi|39 : GGATGTG--ATTT----TTCCTC--T----TTTCG--G-A-GGAAttgaaaaaa
gi|11 : cagGATTTG--ATTT----TTCCTC--T----TTTCA--G-A-GGAAATCC--T-T--GA-TTTAAT-CA---A--TTTCTGGAAA-AAAtt
gi|25 : GATGTG--ATTT----TTCCTC--T----TTCCA--G-A-GGAA--TC--TCC--GA-TTTACT-CA---A--TTTTTGAAAA-a
gi|22 : GATGTT--ATTT----TTCCTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTAGCT-AA---A--GTTTCGAAGA-
gi|12 : GATTTG--ATTT----TTCCTC--T----TTTCG--G-A--GAATTCT--TCT--GA--TTACT-AA---ATTTTTTTTAAAA-AA
gi|37 : GATGTG--ATTT----TTCCTA--C----TTTC-----A-GGAAATCC--TTT--GA-TTt
gi|2 : GATATG--ATTT----TTTTTC--T----TTTCA--A-C-AGAAATCCA-ACT--GACTTTACTAAA---A--TCTTTGAAAA-AAGT
gi|1 : GATGTG--ATTTTTTTCTGCTCATT----TTTCGACG-A-GGAAATCCTGTCT--GACTCTACT-TA---A--ATTGTCACAA-AAATc
gi|21 : ATGTG--ATTT----TTCCTC--T----TT-CA--A-A-GGAAATCC--TGT--GA-TTTACT-CA---A--TTT-TCAAAA-AAc
gi|15 : ATGGG--ATTT----TTCCTC--T----TTTCA--A-A-GGAAATCC--GCC--GA-TTTACA-CA---A--TTT-TGAAAATAAAt
gi|33 : ATGTG--ATTT----TTCCTC--T----TCTCAA-G-A-GGAAATCC--TCT--GA-TTTGCT-CA---
gi|8 : ATGTG--ATTT----TTCCTC--T----TTTCA--G-A-GAAAATTG--TCT--GA-TTAACT-AA---A--ATTTTGAAAA-
gi|36 : ATGTG--ATTTT---CCCCCC--T----TTTTG--G-A-GGAAATCC--TCT--GA-TTTAtttaaa
gi|18 : aATGTG--ATTT----TCCCTA--T----TT-CA--G-A-GGAAATCC--CCT--GA-TTGGCT-T----A--TTTTCGAAAA-
gi|14 : aTGTG--ATTT----TTCCTC--T----TTTCA--G-A-GGAAGTCC--TCC--GT-TTTACT-C----A--TTTTTGAAAA-AAATGtt
gi|26 : TGTG--ATTT----TTCCTC--T----TTTCA--G-A-GGAAATCC--CCT--GA-TTTGCT-AA---A--TTT-TGAAAA-
gi|16 : TGTG--ATTT----TACCTC--C----TTTCA--G-A-GGAAATCC--TCC--GA-TTTACT-TA---A--TTT-TGAAAA-AA
gi|17 : gTGTG--ATTT----TTCCTC--T----TTTCA--G-A-GGAAATGC--TCT--GA-TTTTCT-AA---A--ATTTTGGGAA-AAAt
gi|9 : TGTG--ATAT----TTCGTA--T----TTTCA--G-A-GGAAATCC--TTC--AA-TTTACT-AC---A--TTTTTGAAGA-AGA
gi|19 : GTG--ATAT----TTCCTC--T----TTTTA--G-A-GGAAATTC--TCTCCGA-TTTACT-CA---A--ATT-TGAAAA-AAAaaaa
gi|27 : GTG--ATTT----CCC----------TTTCA--GGA-GGAAATCC--TCT--AT-TTTAGT-CA---A--TTAAAAAAAA-AAA
gi|20 : GTG--ATTT----TTCTTC--T----TT-CA--G-A-GGAATTTC--CCT--G
gi|24 : gatcgTG--ATTT----TTTCTC--T----TTTCA--A-A-GAAAATCC--TAT--GA-TTTACT-AA---A--ATTTTGAAAA-AAcctggttactgaagattgtt
gi|13 : TA--ATCT----TTGCTC--T----TTTTA--G-A-GGAAATCC--TCC--GA-TGGGCT-CA---A--TTT-TAGAGA-AAATGt
gi|29 : tgtTG--AATT----TTCCT--------TTTCA--A-AAGGAAATCC--TCC--GA-TTTACT-C----A--TTT-TGAA
gi|28 : aG--ATTT----TTCTTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTACT-AA---A--ATTGCAAAAA-cgaa
gi|23 : G--ATTT----TTCCTC--T----TTTCA--G-A-GGAAA-----TCT--GA-TTTGCC-TAAATA--TTT-TGAAAA-AAA
gi|30 : gTTT----TTCCTC--T----TTTCA--G-T-GGAAATCC--TCT--GA-TTTACT-TA---A--ATTTTGGAAA-AAat
gi|32 : TCCTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTAGT-CA---A--TTTTTGAAAA-AA
gi|38 : tCTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TCTACt
gi|35 : C--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTACT-AA---A--ATTTTGAAAA-AAaaaatg
gi|34 : CA--G-G-GGAAATCC--TCT--GA-TTGACT-CA---AT-TTTGGGAAAA-AAATG
Alignments
lowQualScore : 1 2222 22 2222 22 1 1 22 11 2 1 33 8888 1 1
lowQualScore : . .... .. .... .. . . .. .. . . .. .... . .
lowQualScore : 4 3333 55 2222 44 0 0 55 44 2 1 44 3333 2 2
consensus : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
Reference ( family-3058 ) : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
gi|1 : GAT-GTGATTTTTTTCTGCTCATT----TTTCGACG-A-GGAAATCCTGTCT--GACTCTA-CT-TAA--A-TTG-TCACAA-AAAT
gi|10 : GAAT-ATGATTTGTC----CTC--T----TTTCA--A-A-AGAAATCC--TCA--GA-TTTA-CT-CAA--T-TTT-TTAATA-AAc
gi|11 : GAT-TTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--T-T--GA-TTTA-AT-CAA--T-TTC-TGGAAA-AAAt
gi|12 : GAT-TTGATTTTTC----CTC--T----TTTCG--G-A--GAATTCT--TCT--GA--TTA-CT-AAATTT-TTT-TTAAAA-AAa
gi|13 : TAATCTTTG----CTC--T----TTTTA--G-A-GGAAATCC--TCC--GA-TGGG-CT-CAA--T-TTT-AGAGAA-AAt
gi|14 : tgtT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAGTCC--TCC--GT-TTTA-CT-C-A--T-TTT-TGAAAA-AAATGtg
gi|15 : AT-GGGATTTTTC----CTC--T----TTTCA--A-A-GGAAATCC--GCC--GA-TTTA-CA-CAA----TTT-TGAAAATAAA
gi|16 : T-GTGATTTTAC----CTC--C----TTTCA--G-A-GGAAATCC--TCC--GA-TTTA-CT-TAA----TTT-TGAAAA-AA
gi|17 : gT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATGC--TCT--GA-TTTT-CT-AAA--A-TTT-TGGGAA-AAAt
gi|18 : AT-GTGATTTTCC----CTA--T----TT-CA--G-A-GGAAATCC--CCT--GA-TTGG-CT-T-A--T-TTT-CGAAAA-
gi|19 : a-GTGATATTTC----CTC--T----TTTTA--G-A-GGAAATTC--TCTCCGA-TTTA-CT-CAA----ATT-TGAAAA-AAAtt
gi|2 : GAT-ATGATTTTTT----TTC--T----TTTCA--A-C-AGAAATCCA-ACT--GACTTTA-CTAAAA--T-CTT-TGAAAA-AAGT
gi|20 : -GTGATTTTTC----TTC--T----TT-CA--G-A-GGAATTTC--CCT--Gc
gi|21 : gatcgAT-GTGATTTTTC----CTC--T----TT-CA--A-A-GGAAATCC--TGT--GA-TTTA-CT-CAA--T-TTT-CAAAAA-cctggttactgaagattgtt
gi|22 : GAT-GTTATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTAG-CT-AAA--G-TTT-CGAAGA-t
gi|23 : GATTTTTC----CTC--T----TTTCA--G-A-GGAAA-----TCT--GA-TTTGCCT-AAA--TATTT-TGAAAA-AAA
gi|24 : gTGATTTTTT----CTC--T----TTTCA--A-A-GAAAATCC--TAT--GA-TTTA-CT-AAA--A-TTT-TGAAAA-AAat
gi|25 : GAT-GTGATTTTTC----CTC--T----TTCCA--G-A-GGAA--TC--TCC--GA-TTTA-CT-CAA--T-TTT-TGAAAA-t
gi|26 : T-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--CCT--GA-TTTG-CT-AAA----TTT-TGAAAA-
gi|27 : -GTGATTTCCC--------------TTTCA--GGA-GGAAATCC--TCT--AT-TTTA-GT-CAA--T-T-----AAAA-AAA
gi|28 : GATTTTTC----TTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-AAA-----AT-TGCAAA-AAAaaaa
gi|29 : TGAATTTTC----CT--------TTTCA--A-AAGGAAATCC--TCC--GA-TTTA-CT-CA-----TTT-TGAA
gi|3 : aGGAC-ATGATTTTTA----CTC--T----TTTCA--G-A-GGAAATCC--TCT--AA-TTTA-CT-CAA--T-GTT-TGAAAA-AAcgaa
gi|30 : agTTTTTC----CTC--T----TTTCA--G-T-GGAAATCC--TCT--GA-TTTA-CT-TAA--A-TTT-TGGAAA-AAta
gi|31 : GGAT-GTGATTTTCC----CCC--T----TTTCT--G-A-GGAAATCC--TCT--G------------A--T-TTT-TGAAAA-AA
gi|32 : TTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-GT-CAA--T-TTT-TGAAAA-AA
gi|33 : AT-GTGATTTTTC----CTC--T----TCTCAA-G-A-GGAAATCC--TCT--GA-TTTG-CT-CAt
gi|34 : CA--G-G-GGAAATCC--TCT--GA-TTGA-CT-CAA--T-TTTGGGAAAA-AAATG
gi|35 : C--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-AAA--A-TTT-TGAAAA-AAaa
gi|36 : AT-GTGATTTTCC----CCCC-T----TTTTG--G-A-GGAAATCC--TCT--GA-TTTA-
gi|37 : aGAT-GTGATTTTTC----CTA--C----TTTC-----A-GGAAATCC--TTT--GA-TT
gi|38 : ----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TCTA-C
gi|39 : GGAT-GTGATTTTTC----CTC--T----TTTCG--G-A-GGAAaaaatg
gi|4 : cagGGAT-GTGATTTTTC----CTC--TCTCTTTTCA--G-A-GGAAATCC--TCT--AA-TTTA-CT-AAA--A-TTT-TGAAAA-tt
gi|5 : GGAT-GTGATTTCTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTA-TGAAAA-AAATG
gi|6 : GGATTGGAACTCTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCA--GA-TTTA-TT-AAA--T-TTT-TGAAAA-AA
gi|7 : GGGT-GTGATTTTTC----CTC--G----TTTCA--G-A-GGAAATCC--TCC--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAt
gi|8 : gAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GAAAATTG--TCT--GA-TTAA-CT-AAA--A-TTT-TGAAAA-c
gi|9 : T-GTGATATTTC----GTA--T----TTTCA--G-A-GGAAATCC--TTC--AA-TTTA-CT-ACA--T-TTT-TGAAGA-AGAtttaaa
Alignments
lowQualScore : 1 2222 22 2222 22 1 1 22 11 2 1 33 8888 1 1
lowQualScore : . .... .. .... .. . . .. .. . . .. .... . .
lowQualScore : 4 3333 55 2222 44 0 0 55 44 2 1 44 3333 2 2
consensus : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
Reference ( family-3058 ) : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
gi|1 : GAT-GTGATTTTTTTCTGCTCATT----TTTCGACG-A-GGAAATCCTGTCT--GACTCTA-CT-TAA--A-TTG-TCACAA-AAAT
gi|10 : GAAT-ATGATTTGTC----CTC--T----TTTCA--A-A-AGAAATCC--TCA--GA-TTTA-CT-CAA--T-TTT-TTAATA-AAc
gi|11 : GAT-TTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--T-T--GA-TTTA-AT-CAA--T-TTC-TGGAAA-AAAt
gi|12 : GAT-TTGATTTTTC----CTC--T----TTTCG--G-A--GAATTCT--TCT--GA--TTA-CT-AAATTT-TTT-TTAAAA-AAa
gi|13 : TAATCTTTG----CTC--T----TTTTA--G-A-GGAAATCC--TCC--GA-TGGG-CT-CAA--T-TTT-AGAGAA-AAt
gi|14 : tgtT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAGTCC--TCC--GT-TTTA-CT-C-A--T-TTT-TGAAAA-AAATGtg
gi|15 : AT-GGGATTTTTC----CTC--T----TTTCA--A-A-GGAAATCC--GCC--GA-TTTA-CA-CAA----TTT-TGAAAATAAA
gi|16 : T-GTGATTTTAC----CTC--C----TTTCA--G-A-GGAAATCC--TCC--GA-TTTA-CT-TAA----TTT-TGAAAA-AA
gi|17 : gT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATGC--TCT--GA-TTTT-CT-AAA--A-TTT-TGGGAA-AAAt
gi|18 : AT-GTGATTTTCC----CTA--T----TT-CA--G-A-GGAAATCC--CCT--GA-TTGG-CT-T-A--T-TTT-CGAAAA-
gi|19 : a-GTGATATTTC----CTC--T----TTTTA--G-A-GGAAATTC--TCTCCGA-TTTA-CT-CAA----ATT-TGAAAA-AAAtt
gi|2 : GAT-ATGATTTTTT----TTC--T----TTTCA--A-C-AGAAATCCA-ACT--GACTTTA-CTAAAA--T-CTT-TGAAAA-AAGT
gi|20 : -GTGATTTTTC----TTC--T----TT-CA--G-A-GGAATTTC--CCT--Gc
gi|21 : gatcgAT-GTGATTTTTC----CTC--T----TT-CA--A-A-GGAAATCC--TGT--GA-TTTA-CT-CAA--T-TTT-CAAAAA-cctggttactgaagattgtt
gi|22 : GAT-GTTATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTAG-CT-AAA--G-TTT-CGAAGA-t
gi|23 : GATTTTTC----CTC--T----TTTCA--G-A-GGAAA-----TCT--GA-TTTGCCT-AAA--TATTT-TGAAAA-AAA
gi|24 : gTGATTTTTT----CTC--T----TTTCA--A-A-GAAAATCC--TAT--GA-TTTA-CT-AAA--A-TTT-TGAAAA-AAat
gi|25 : GAT-GTGATTTTTC----CTC--T----TTCCA--G-A-GGAA--TC--TCC--GA-TTTA-CT-CAA--T-TTT-TGAAAA-t
gi|26 : T-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--CCT--GA-TTTG-CT-AAA----TTT-TGAAAA-
gi|27 : -GTGATTTCCC--------------TTTCA--GGA-GGAAATCC--TCT--AT-TTTA-GT-CAA--T-T-----AAAA-AAA
gi|28 : GATTTTTC----TTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-AAA-----AT-TGCAAA-AAAaaaa
gi|29 : TGAATTTTC----CT--------TTTCA--A-AAGGAAATCC--TCC--GA-TTTA-CT-CA-----TTT-TGAA
gi|3 : aGGAC-ATGATTTTTA----CTC--T----TTTCA--G-A-GGAAATCC--TCT--AA-TTTA-CT-CAA--T-GTT-TGAAAA-AAcgaa
gi|30 : agTTTTTC----CTC--T----TTTCA--G-T-GGAAATCC--TCT--GA-TTTA-CT-TAA--A-TTT-TGGAAA-AAta
gi|31 : GGAT-GTGATTTTCC----CCC--T----TTTCT--G-A-GGAAATCC--TCT--G------------A--T-TTT-TGAAAA-AA
gi|32 : TTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-GT-CAA--T-TTT-TGAAAA-AA
gi|33 : AT-GTGATTTTTC----CTC--T----TCTCAA-G-A-GGAAATCC--TCT--GA-TTTG-CT-CAt
gi|34 : CA--G-G-GGAAATCC--TCT--GA-TTGA-CT-CAA--T-TTTGGGAAAA-AAATG
gi|35 : C--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-AAA--A-TTT-TGAAAA-AAaa
gi|36 : AT-GTGATTTTCC----CCCC-T----TTTTG--G-A-GGAAATCC--TCT--GA-TTTA-
gi|37 : aGAT-GTGATTTTTC----CTA--C----TTTC-----A-GGAAATCC--TTT--GA-TT
gi|38 : ----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TCTA-C
gi|39 : GGAT-GTGATTTTTC----CTC--T----TTTCG--G-A-GGAAaaaatg
gi|4 : cagGGAT-GTGATTTTTC----CTC--TCTCTTTTCA--G-A-GGAAATCC--TCT--AA-TTTA-CT-AAA--A-TTT-TGAAAA-tt
gi|5 : GGAT-GTGATTTCTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTA-TGAAAA-AAATG
gi|6 : GGATTGGAACTCTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCA--GA-TTTA-TT-AAA--T-TTT-TGAAAA-AA
gi|7 : GGGT-GTGATTTTTC----CTC--G----TTTCA--G-A-GGAAATCC--TCC--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAt
gi|8 : gAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GAAAATTG--TCT--GA-TTAA-CT-AAA--A-TTT-TGAAAA-c
gi|9 : T-GTGATATTTC----GTA--T----TTTCA--G-A-GGAAATCC--TTC--AA-TTTA-CT-ACA--T-TTT-TGAAGA-AGAtttaaa
blockSeqs : T . C CTCT A G A A CC C C AA TTT G T
blockSeqs : . . . . . . . . . . . C TA . .
blockSeqs : . . . . . . . . . . . C T . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . C T . .
blockSeqs : . . . . . . . . . . . C T . .
blockSeqs : . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . . . . . T T . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . T T . .
blockSeqs : . . . . . . . . . . . C G . .
blockSeqs : . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . C T . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . . . . . T T . .
blockSeqs : . . . . . . . . . . . C T . .
blockSeqs : . . . . . . . . . . . C T . .
blockSeqs : . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . . . . . A T . .
blockSeqs : . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqCons : **** ** ** **
originalCons : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
finalCons : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
Alignments
lowQualScore : 1 2222 22 2222 22 1 1 22 11 2 1 33 8888 1 1
lowQualScore : . .... .. .... .. . . .. .. . . .. .... . .
lowQualScore : 4 3333 55 2222 44 0 0 55 44 2 1 44 3333 2 2
consensus : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
Reference ( family-3058 ) : GGAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAATG
gi|1 : GAT-GTGATTTTTTTCTGCTCATT----TTTCGACG-A-GGAAATCCTGTCT--GACTCTA-CT-TAA--A-TTG-TCACAA-AAAT
gi|10 : GAAT-ATGATTTGTC----CTC--T----TTTCA--A-A-AGAAATCC--TCA--GA-TTTA-CT-CAA--T-TTT-TTAATA-AAc
gi|11 : GAT-TTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--T-T--GA-TTTA-AT-CAA--T-TTC-TGGAAA-AAAt
gi|12 : GAT-TTGATTTTTC----CTC--T----TTTCG--G-A--GAATTCT--TCT--GA--TTA-CT-AAATTT-TTT-TTAAAA-AAa
gi|13 : TAATCTTTG----CTC--T----TTTTA--G-A-GGAAATCC--TCC--GA-TGGG-CT-CAA--T-TTT-AGAGAA-AAt
gi|14 : tgtT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAGTCC--TCC--GT-TTTA-CT-C-A--T-TTT-TGAAAA-AAATGtg
gi|15 : AT-GGGATTTTTC----CTC--T----TTTCA--A-A-GGAAATCC--GCC--GA-TTTA-CA-CAA----TTT-TGAAAATAAA
gi|16 : T-GTGATTTTAC----CTC--C----TTTCA--G-A-GGAAATCC--TCC--GA-TTTA-CT-TAA----TTT-TGAAAA-AA
gi|17 : gT-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATGC--TCT--GA-TTTT-CT-AAA--A-TTT-TGGGAA-AAAt
gi|18 : AT-GTGATTTTCC----CTA--T----TT-CA--G-A-GGAAATCC--CCT--GA-TTGG-CT-T-A--T-TTT-CGAAAA-
gi|19 : a-GTGATATTTC----CTC--T----TTTTA--G-A-GGAAATTC--TCTCCGA-TTTA-CT-CAA----ATT-TGAAAA-AAAtt
gi|2 : GAT-ATGATTTTTT----TTC--T----TTTCA--A-C-AGAAATCCA-ACT--GACTTTA-CTAAAA--T-CTT-TGAAAA-AAGT
gi|20 : -GTGATTTTTC----TTC--T----TT-CA--G-A-GGAATTTC--CCT--Gc
gi|21 : gatcgAT-GTGATTTTTC----CTC--T----TT-CA--A-A-GGAAATCC--TGT--GA-TTTA-CT-CAA--T-TTT-CAAAAA-cctggttactgaagattgtt
gi|22 : GAT-GTTATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTAG-CT-AAA--G-TTT-CGAAGA-t
gi|23 : GATTTTTC----CTC--T----TTTCA--G-A-GGAAA-----TCT--GA-TTTGCCT-AAA--TATTT-TGAAAA-AAA
gi|24 : gTGATTTTTT----CTC--T----TTTCA--A-A-GAAAATCC--TAT--GA-TTTA-CT-AAA--A-TTT-TGAAAA-AAat
gi|25 : GAT-GTGATTTTTC----CTC--T----TTCCA--G-A-GGAA--TC--TCC--GA-TTTA-CT-CAA--T-TTT-TGAAAA-t
gi|26 : T-GTGATTTTTC----CTC--T----TTTCA--G-A-GGAAATCC--CCT--GA-TTTG-CT-AAA----TTT-TGAAAA-
gi|27 : -GTGATTTCCC--------------TTTCA--GGA-GGAAATCC--TCT--AT-TTTA-GT-CAA--T-T-----AAAA-AAA
gi|28 : GATTTTTC----TTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-AAA-----AT-TGCAAA-AAAaaaa
gi|29 : TGAATTTTC----CT--------TTTCA--A-AAGGAAATCC--TCC--GA-TTTA-CT-CA-----TTT-TGAA
gi|3 : aGGAC-ATGATTTTTA----CTC--T----TTTCA--G-A-GGAAATCC--TCT--AA-TTTA-CT-CAA--T-GTT-TGAAAA-AAcgaa
gi|30 : agTTTTTC----CTC--T----TTTCA--G-T-GGAAATCC--TCT--GA-TTTA-CT-TAA--A-TTT-TGGAAA-AAta
gi|31 : GGAT-GTGATTTTCC----CCC--T----TTTCT--G-A-GGAAATCC--TCT--G------------A--T-TTT-TGAAAA-AA
gi|32 : TTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-GT-CAA--T-TTT-TGAAAA-AA
gi|33 : AT-GTGATTTTTC----CTC--T----TCTCAA-G-A-GGAAATCC--TCT--GA-TTTG-CT-CAt
gi|34 : CA--G-G-GGAAATCC--TCT--GA-TTGA-CT-CAA--T-TTTGGGAAAA-AAATG
gi|35 : C--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-AAA--A-TTT-TGAAAA-AAaa
gi|36 : AT-GTGATTTTCC----CCCC-T----TTTTG--G-A-GGAAATCC--TCT--GA-TTTA-
gi|37 : aGAT-GTGATTTTTC----CTA--C----TTTC-----A-GGAAATCC--TTT--GA-TT
gi|38 : ----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TCTA-C
gi|39 : GGAT-GTGATTTTTC----CTC--T----TTTCG--G-A-GGAAaaaatg
gi|4 : cagGGAT-GTGATTTTTC----CTC--TCTCTTTTCA--G-A-GGAAATCC--TCT--AA-TTTA-CT-AAA--A-TTT-TGAAAA-tt
gi|5 : GGAT-GTGATTTCTC----CTC--T----TTTCA--G-A-GGAAATCC--TCT--GA-TTTA-CT-CAA--T-TTA-TGAAAA-AAATG
gi|6 : GGATTGGAACTCTTC----CTC--T----TTTCA--G-A-GGAAATCC--TCA--GA-TTTA-TT-AAA--T-TTT-TGAAAA-AA
gi|7 : GGGT-GTGATTTTTC----CTC--G----TTTCA--G-A-GGAAATCC--TCC--GA-TTTA-CT-CAA--T-TTT-TGAAAA-AAt
gi|8 : gAT-GTGATTTTTC----CTC--T----TTTCA--G-A-GAAAATTG--TCT--GA-TTAA-CT-AAA--A-TTT-TGAAAA-c
gi|9 : T-GTGATATTTC----GTA--T----TTTCA--G-A-GGAAATCC--TTC--AA-TTTA-CT-ACA--T-TTT-TGAAGA-AGAtttaaa