lowQualScore : 11111111111111111111111111111111111111 11111111111111111111
lowQualScore : 55555555 33 1 111 1 222222222222222 1 222 111 6666666666666666666666666666666 111 66666666666666666666666666666666666666 00000000000000000000000000000000000000 1111 1111 00000000000000000000 3333333333333333333333 111111 1111111 1 111 1
lowQualScore : 99999999 55 5 777 6 9 2 888888888888888 3 666 6 222 66 66 8888888888888888888888888888888 000 6666 6 22222222222222222222222222222222222222 5 0 3 44 6666 66666666666666666666666666666666666666 5555 5 0 0000 2 55 55555555555555555555 9 4 55 666 4 4444444444444444444444 3 2 222222 3 44 2 888888 7777777 9 0 4 111 66 0
lowQualScore : ........ .. . ... . . . ............... . ... . ... .. .. ............................... ... .... . ...................................... . . . .. .... ...................................... .... . . .... . .. .................... . . .. ... . ...................... . . ...... . .. . ...... ....... . . . ... .. .
lowQualScore : 00000000 55 5 555 7 0 0 333333333333333 3 000 7 555 99 77 0000000000000000000000000000000 000 6666 7 44444444444444444444444444444444444444 0 4 8 88 1111 88888888888888888888888888888888888888 8888 0 2 6666 6 22 22222222222222222222 8 0 88 444 0 6666666666666666666666 3 0 111111 3 33 8 444444 1111111 7 9 0 777 99 3
consensus : TGTTGCATAAGGACTATGGACAGACTAANNNGTAACAACGGCA--TCGC-TAT--CG-GT-ATTT-CGG-CAN--TATCATGTTATTC-GTCCC---------------GC-------T--TT--ATTCC---GTATTTA-TTAGCT---T-------GTTA-GCTTT-AT-TCCG-TA--TA--TTAG-CTTGNTCC-CCC-A-CCAT-CCACC---AC-AC-CCT-A--CA-GG-TTGTTTCAATTT-A--TA-CTTCTT----TCACNTGTGNCA----T--A---AAAAG---TTTTTTGAAAA-T-NTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCAAA---TTTAAAG-AG-AAAATAAC----TCTTACT-AA-A--GGAA-AATAACTCTT-AC---ATTTTA--TAGCGGGNCGAATAACATG
Reference ( gi|2 ) : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAGTGGCA--TTGC-TAT--CATGT-ATTTGCGG-CAT--TATCATGTTATTT-GTCCC---------------GC-------T--TT--ATTCC---GTATTTA-TTAGCT---T-------GTTA-GCTTT-AT-TCTG-TATATA--TTAG-CTTGTTCC-TCC-A-CCATGCCACCA--ACTAC-CCT-A--CA-GA-TTATTTCTTTTT-A--TA-CTTCTT----TCACTTGTAACA----A--A---AAAAGGTTTTTTTTGAGAA-T-TTGCAT---AT-TCCTATA---------GTAACTTAA--CGGA-ATAAATCACA---TTTAAAG-AG-AAGATAAC----TTTTACT-TA-A--GGAATAATAACTCTT-AC---ATTTTA--TAGTGGGACGAATAACATG
gi|1 : TGTTGCATAAGGATTATGGA--GACTAATTGGTAA-AACGACAATTCGC-TATACTAGGT-ATTT-TGG-CAGAGTATCATGTTATTTTGTAGC---------------GC-------TGGTCGAATTCCCCAGTATTTAGTTACCT---T-------GTTTTGCTTTTATGTCGGCTATTTAAGTTAG-CTTGTTCG-TCC-A--CATCCCAC-------AC-CCT-AAGCA-G--TT-TTTCTTTTTAA--TAGCTTCTTAAAGACACTTGTTACA----A--G---ACAG---TTTTTTTGAAAACT-CTG-ATTAAAT-TCCTGAA---------GTAACTTAA--CGGAGATAAATAACAATTCTTAAAGAAG-AAGATACCGATACTTGACTATT-A--GGAATAAGTACTCTTAAC---GTATTA--TAATG
gi|12 : GTTGCAT-----CT-TGGACAGAC-AAAGTGTAACAATG-CA--TCGCATAT--CATGT-ATT--CGG-CAG--TGTCATGT-ATTT-G-CCC---------------GC-------T--T---ATTCC---GTATTTA-TTAGCT------------TTA---CTC-AT-TTT----CCTA--TTAG-C-TGTTCCGTCC-ATTCA--CC-CCC--ACCACTCCT-A--CA-GG-Ttgtgcgttttgcatataagttaatcacgggatttacatgagaaatgatggaaagaatagcttacatcgggaccgataacgactggacataataatccgattgtctcaagccggaaatacagacatacaaggtaatagtgcaggctaatgactgccataaactgatgaaggcactcaacccgggaagtaactagcataaacattacatggaatcctcagttaaatccactgttgacgagtagccgggtcaggaaatggagcggtgtgtgaatattggagtgagacattttacctcaatgttttcattactgcacttgacactattgatatatgcaatgcaaacgttgtgtctggtagatattctccaccctaattttggcatgagaagggtgcgtgtttttttgttgttgattttttatgtgaaaatcgatagtgaagtaatatttaactttcggggagatatagccgtagctagaccaattgttcaatgggacccgaaagtttagaactttgcgtgctttctgcattcgctccttaactacaaaactgttttttgaaacattcta
gi|15 : CACTGGCA--TGAG-TAC--CG-GTCATCTGGGGGCAT--TATCATGTTATTC-GACCCGCTATTTACAATGTAGC-------T--TT--ATTCC---ATAT----TTAGCT---TCTTCCTATTTA-GCTTT-AT-TCCG-TAT-----TTAG-CTTGTTCC-T
gi|23 : GG-CAT--CATCATGTTATTC-GTCCC---------------ACTATTTGGT--TT--ATTCC---GTATTTA-
gi|14 : agG-CAT--AATACCGTTATCT-GCACC---------------GC-------T--T---ATTCC---GT------TTAGCT---T-------GTTg
gi|24 : G-CAA--TATCATGTTATTC-GTCCC---------------AC-----------T--ATTTC---GTccccccatcatcccccatcaccaccctctaggttgttttaatttaaatacttctttcaaatgtaatatttttaaaaagtttttgaaaatttgcata
gi|7 : ATCATGTTATTA-GCATC---------------GC----------------------AAATTAA-TTA-CT---T-------C----GCTT--AT-TCCG-TA---A--TTAGGTTTGATCC-CCC-A-CCAT--CACCC--AC--------A---A-GG-TTGTTTCAATTT-G--TA-CTTCTT----TCAAATGTAACA----T--C---TGCAAGTTTTTT---AACA-T-TTGCAT---AT-TCCTATA---------GT-----------------AATCAAA---TTTAAAG-AG-AAAGTAAC----TCTTACT-AA-A--GGAA-AATAACTCTT-tta
gi|6 : ATTTA-ATATCTACAT-------GT-A-GCTT--AT-TCCG-TA-AT---TTGA-TTTGATCC-CCC-A-CCAT-------------C-CCTCA--CA-------------TTT-G--TA-CTTCTT----TGAAATGTAACA----T--TT--GCAAG---TTTTTTGAAAA-T-ATGCAT---AT-TCCTATATA-------GTAATTCAA--CGGA-ATAAATCAAA---TTCAAAG-AG-AAAGTAAC----TCTTACT-AA-A--GGAA-AATAACTCTT-ccgcgatgataataacatgattat
gi|8 : tgttattagcatcgcaaTTT-AC-TCCG-TA-AT---TTAT-CTTGATCC-CCC-A-CCA----------------CCC-A--CA-AAGTTGTTTCAAATT-A--TA-CTTCTT----TCACCTGTGCCA----T--ATTCAAAAG------TTTGAAAA-T-TTGCAT---AT-TCCTACA---------G-----TGA--CAGA-ATAAACCAAA---GTTAAAG-GG-CAAATAA------------------------AAAAACTCTC-AC---ATTTTA--ccgcgatgctaataacatgattat
gi|14 : atcatgttattcgctttgcagaaattgaaaattcagTT-AT-TCCG-T-------TTAG-CTTGTTCC-CCCCA-TCATCCC-CCATCACCAC-CCT-C--TA-GG-TTGTTTTAATTT-AAATA-CTTCTT----TCAAATGTAATATTTTT--A---AAAAG----TTTTTGAAAA-T-TTGCAT---A
gi|11 : gcataataccgttatctgcaccgc-AT-CCTG-T---TA--TTAG-CAT--------C-G-CGATGCNNNNNNNACAAC-CC--A--CA-AAGTTGTTTTGATTT----TA-GTTTTT----TCACTTGTGTCA----TGTA---AAAAG-----TTTTGAAAA-A-CTGCAT---AT-TCTTATT---------GTAATTCAA--CAGA-ATAAACCAAA---TTTAAAA-GG-CAAATAAC----TCTTAC
gi|9 : TCC-TCC-C-CCA--CCACCA--AT-----CC-A--CAAGG-TTGTTTTAATTT-A--TA-CTT--T----TCACTTGTGTCA----TGTA---AAAAG-----TTTTGAAAA-T-TTGCAT---AT-TCCCAT--------------------------GTAAACCAAA---TTTAAAG-GG-CACATAAC----TCTTACT-AA-A--GGAAAAATAACTCTT-GC---ACTTTA--TCGCGGTGCAAATAACactttatcgcggtgtgaata
gi|16 : ttgttccattatcaTTT-C--TA-CTTTTT----TCACTTGTGCCATGT-G--A---AA-------TTTTTGAAAA-T-ATGCAT---AT-TCCTATA---------GTAATGCAA--GGGA-ATAACCCAAA---TTTAATG-GA-CAAACAAC----TCCTACggtattat
gi|18 : tcacaaggtggttttaaTTTTTGA-AA-TATTGTAT---ATCTCCTCTA---------GTAATTCCA--------------ACA---TT-AAAG-AG-AAAGCAAC----TCTTACT-AACA--GGAA-AATAACTCTT-
gi|19 : ttacaacgAA-T-ATGCAA---AT-TTTCAAA---------AAAGCTAAATACGGA-ATA-----------TTAATG-AG-CAAATAAG----TTTTACT-AA-A--GGAAAAATAACTCTT-AC---ACTTTA--TTGCAGATCGAATAGCAtccgcgatgctaataacatga
gi|17 : atT---AT-TCTTATATAGTACATTGTAATTCAA--ACGA-ATAAATCAAA---ATCAAAG-AG-AAGTTAAC----TCTTACT-AA-AGGGGAA-AATAACTCTT-
gi|15 : gA--CGGA-ATAAAGC--------TAAAT-AGGAAGA-AGC----T---AAA-TA-T--GGAATAA-AGCT----AC---ATTGTAAATAGCGGGTCGAATAACATGccgcgatgccaataacatgattgtg
gi|20 : cactggcatgagtaccggtcatctgggggcattat-ATGAATCAAA---TTTAAAA-AG-AAAATAAC----TCTTACT-AA-A--GGAAC-ATAACTCTT-CCGCAATGCTA--AATTCAG-CTAATAACATGatttagcttgttcct
gi|23 : A--TAGTGGGACGAATAACATGattatg
gi|24 : agggcatcatA--TAGTGGGACGAATAACATGttggtttattccgtatttag
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TAACTGCAATAAACATGGTGGGCACTAAAACCCGGAAAGTAATAAATAAACATTACCATGGCCATCCTCTCTTTCCACTGTTGGTCCCGCTCGAAATGACGGTGGGCTACTTGGAGGTGCGACATTTACCCTACTGTTTTCTTCACTGCCCCTTAACTTTAAATTATATCCATCCAAGAACGATTGTCCGCTGGGCTACATAATATTTCCACTATTTGCATGAGAAGGGTGCGTGTTTTTGTGTTGTTGATTTTTTTTGTTGAAAAAATGATAGTTGAAGTATTTTACTCCGGGGA
Unaligned ( gi|4 ): CGAAATACGTAGGTACCTTGTGAGGCGACATTTACTTATGTTTTATTACTGCCCACTAACTTTATATATCCATCCAAGACGTATTGCCCCTGGTACCATTACTATTCAAATCCTATTTGGCATGTGAGAAGGTGCGTGTTTTTTGTTGTTGGATTTTTTTTCTTGTAAAAATCGACAGTGAAGCTAATATTTAAACTCGGGAATATAGCACGCATTTTCAATGAGACCAAGTTGAAACTTTGCTGCTTTCTGTTCTTAAACTACAAACTGTTTTGAAACGT
Unaligned ( gi|5 ): GTTATTGCCCAGTTACCTTAATATCTCCATCCAAACGATTGACCCAGGGTAGATACGATTTCATATCTTTTTGGCCTGAGAAGTATGCGTGGTGTTGTGTTGTTCGTTTGTTTTGTTTGAAATTCGATAGTGAAGTAATAGTTAACTCTGGGGACACATAACACGTCTTTTCAATGGGTCAAAAATATGAACATTTGCTACTTTCTGTCTCTTAAACGAAAAACACTTTTTAAAACGTTTTA
Unaligned ( gi|10 ): TTACTGTCCATTCACCTGTATATTAATCCAACCAAATGATTGTCCCAGGGTAGATAGTATTTCACACCTTTCTGGCATGAGAAGGGTGCATGTTGTTTTTGGATAAGGTGCTTAAGGTTTTTTTTTCAGGTGAAAATCAATATTTTTAAACTCCTGAGACATATAGCACGCTTTTTC
Unaligned ( gi|13 ): AATGCGGTATTTGCATTAATTAATCTAGGGATTTACAAGAAATGATGGCAAAAATAGACTTACATCGTGGCGCCTATAACCTGACAAAATCCACGCTTGTCTCACCGGAAATAACAACATACAAGTAATACGCAGGCTAA
Unaligned ( gi|21 ): TAATCAGGTTATTCGTCCCGCAGGAATTGACTATTTAGTTTATTCCGTATATAGCTATTTTG
Unaligned ( gi|22 ): CCCGCAATAAACACGCTGAGCACTAAAACCCGGAAAGTAATCAATAAACATTACATGAC
Alignments
lowQualScore : 66666666 22 11 1 1 3333 1 111 5555555555555555555555555555555 333333333333333 2222222222 444444444444 111 44444444444 2222 111111111 11111111 22222222 11
lowQualScore : 11111111 22 7 333 6 0 6 33 0 0 0 1111 0 333 99 99 1 4 2 3333333333333333333333333333333 777 33 4 4 000000000000000 5 55 0 4444444444 4 0 1 66 888 5 55 888 111111111111 99 0 1 333 4 9999 1 1 00000000000 2222 3 3 4 555 3 999999999 33333333 3 0 3 44 3 1 555 3 3 3 55 3 7 3 44 11111111 11 3
lowQualScore : ........ .. . ... . . . .. . . . .... . ... .. .. . . . ............................... ... .. . . ............... . .. . .......... . . . .. ... . .. ... ............ .. . . ... . .... . . ........... .... . . . ... . ......... ........ . . . .. . . ... . . . .. . . . .. ........ .. .
lowQualScore : 00000000 33 3 000 7 7 5 88 2 0 0 8888 0 555 22 22 0 4 7 2222222222222222222222222222222 888 77 4 5 111111111111111 0 55 8 6666666666 0 8 0 11 888 0 33 999 777777777777 55 1 1 000 4 4444 0 0 33333333333 2222 6 6 5 888 6 555555555 44444444 3 8 3 66 3 0 888 3 6 6 00 6 3 6 55 11111111 11 0
consensus : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT-C--GTGT-ATTT-CGG--C--ANTATCATGTTA-TTCGTCCC---------------GC-------T--TT--ATTCC---GTATTTA-TTAGCT---TG-TT-------AGC-T--TTATTCCG--TAT----ATTAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCA----T--AT--GAAAG---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT-ACACTTTATCGCGGTGCGAATAACATG
Reference ( family-3017 ) : TGTTGCATAAGGACTATGGACAGACTAANNNGTAACAACGGCA--TCGC-TAT-C--G-GT-ATTT-CGG--C--ANTATCATGTTA-TTCGTCCC---------------GC-------T--TT--ATTCC---GTATTTA-TTAGCT---TG-TT-------AGC-T--TTATTCCG--TAT----ATTAG-CTTGNTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACNTGTGNCA----T--A---AAAAG---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT-ACATTTTATAGCGGGNCGAATAACATG
gi|1 : TGTTGCATAAGGATTATGG--AGACTAATTGGTAA-AACGACAATTCGC-TATACTAG-GT-ATTT-TGG--CAGAGTATCATGTTATTTTGTAGC---------------GC-------TGGTCGAATTCCCCAGTATTTAGTTACCT---TGTTT-------TGCTT--TTATGTCGGCTATTTAAGTTAG-CTTGTTCG--TC---C-A-CAT-C----CCA----CACCCTA-AGCAGTT-TTTCTTTTTA-ATAGCTTCTTAAAGACACTTGTTACA-------A---GACAGT--TTTTTTGAAA-ACTCTG-ATTAAAT-TCCTGAA---------GTAACTTAA--CGGAGATAAATAACAATTCTTAAAGAAGAAGATACCGATACTTGACTATT-A--GG-AATAA-GTACTCTTAACGTATTATA
gi|11 : CNN-NNN--NNA----CAACCCACAAA-GTTGTTTTGATTT---TA-GTTTTT----TCACTTGTGTCA----TGTA---AAAAG---TTTT--GAAA-A-ACTGCAT---AT-TCTTATT---------GTAATTCAA--CAGA-ATAAACCA-AAT--TTA-------------------------A-A-A--GG-CA-AA-TAACTCTT-ACACTTTATCGCGGTGTGAATAatgtgtgcgttttgcatataagttaatcacgggatttacatgagaaatgatggaaagaatagcttacatcgggaccgataacgactggacataataatccgattgtctcaagccggaaatacagacatacaaggtaatagtgcaggctaatgactgccataaactgatgaaggcactcaacccgggaagtaactagcataaacattacatggaatcctcagttaaatccactgttgacgagtagccgggtcaggaaatggagcggtgtgtgaatattggagtgagacattttacctcaatgttttcattactgcacttgacactattgatatatgcaatgcaaacgttgtgtctggtagatattctccaccctaattttggcatgagaagggtgcgtgtttttttgttgttgattttttatgtgaaaatcgatagtgaagtaatatttaactttcggggagatatagccgtagctagaccaattgttcaatgggacccgaaagtttagaactttgcgtgctttctgcattcgctccttaactacaaaactgttttttgaaacattcta
gi|12 : atcctgttattagcatcgcgatgGTTGCAT-----CT-TGGACAGAC-AAAGTGTAACAATG-CA--TCGCATAT-C--ATGT-ATT--CGG--C--AGTGTCATGT-A-TTTG-CCC---------------GC-------T--T---ATTCC---GTATTTA-TTAGCT------TT-------A-C-TCATT-TTCC-----T----ATTAG-C-TGTTCCGTCCATTC-ACC-C-CCA--CCA----C-TCCTACAG--GT
gi|14 : GTTA-TCTGCACC---------------GC-------T--T---ATTCC---GT------TTAGCT---TG-TT-------
gi|14 : gcataatacc--TTATTCCG--T-------TTAG-CTTGTTCC--CC---CCATCAT-CCC--CCATCACCACCCTCTAG--GTTGTTTTAATTTAAATA-CTTCTT----TCAAATGTAATATTTTT--A---AAAAG----TTTTTGAAA-A-TTTGCAT---Accccccatcatcccccatcaccaccctctaggttgttttaatttaaatacttctttcaaatgtaatatttttaaaaagtttttgaaaatttgcata
gi|15 : gcataataccgttatctgcaccgcGGCA--TGAG-TAC-C--G-GTCATCT-GGGGGC--ATTATCATGTTA-TTCGACCCGCTATTTACAATGTAGC-------T--TT--ATTCC---ATAT----TTAGCT---TC-TTCCTATTTAGC-T--TTATTCCG--TAT-----TTAG-CTTGTTCC--
gi|16 : cactAG--GTGGTTTTAATTT--CTA-CTTTTT----TCACTTGTGCCA----T--GT--GAAA-----TTTTTGAAA-A-TATGCAT---AT-TCCTATA---------GTAATGCAA--GGGA-ATAACCCA-AAT--TTAATG-GACAAACA---ACTCCT-ACt
gi|17 : tcacaT---AT-TCTTATATAGTACATTGTAATTCAA--ACGA-ATAAATCA-AAA--TCAAAG-AGAAGTTA---ACTCTT-ACTA-A-AGGGG-AA-AA-TAACTCTT-CC--------GCGATGCCAATAACATG
gi|18 : gTTTTTGAAATA-T-TGTAT---ATCTCCTCTA---------GTAATT---------------CCA-ACA--TTAAAG-AGAAAGCA---ACTCTT-ACTA-ACA--GG-AA-AA-TAACTCTT-TC-------CGCGATGCTAATAACATGattgtg
gi|19 : ttacaacgA-A-TATGCAA---AT-TTTCAAA---------AAAGCTAAATACGGA-ATA-----------TTAATG-AGCAAATA---AGTTTT-ACTA-A-A--GG-AA-AAATAACTCTT-ACACTTTATTGCAGATCGAATAGCAa
gi|2 : atTGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAGTGGCA--TTGC-TAT-C--ATGT-ATTTGCGG--C--ATTATCATGTTA-TTTGTCCC---------------GC-------T--TT--ATTCC---GTATTTA-TTAGCT---TG-TT-------AGC-T--TTATTCTGTATAT----ATTAG-CTTGTTCC--TC---C-ACCATGCCA--CCAAC--TACCCTACAG--ATTATTTCTTTTT--ATA-CTTCTT----TCACTTGTAACA----A--A---AAAAGGTTTTTTTTGAGA-A-TTTGCAT---AT-TCCTATA---------GTAACTTAA--CGGA-ATAAATCA-CAT--TTAAAG-AGAAGATA---ACTTTT-ACTT-A-A--GG-AATAA-TAACTCTT-ACATTTTATAGTGGGACGAATAACATG
gi|20 : -ATGAATCA-AAT--TTAAAA-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-CA-TAACTCTT-
gi|21 : ATCAGGTTA-TTCGTCCC---------------GC--------------A-------GGA---A-TTGACT---AT-TT-------AG--T--TTATTCCG--TAT----A-TAG-CTccgcaatgctaaattcagctaataacatgattatg
gi|23 : taGG--C--ATCATCATGTTA-TTCGTCCC---------------ACTATTTGGT--TT--ATTCC---GTATTTA-attttg
gi|24 : agG--C--AATATCATGTTA-TTCGTCCC---------------AC-----------T--ATTTC---GTg
gi|6 : ATTTA-ATATCTACATG-T--------AGC-T--T-ATTCCG--TAA----TTTGA-TTTGATCC--CC---C-ACCAT-CCC--TCA----CA--------------------TTT--GTA-CTTCTT----TGAAATGTAACA----T--TT--GCAAG---TTTTTTGAAA-A-TATGCAT---AT-TCCTATATA-------GTAATTCAA--CGGA-ATAAATCA-AAT--TCAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT-CC--------GCGATGCTAATAACATGtta
gi|7 : tgttattagcatcgcaaATCATGTTA-TTAGCATC---------------GC----------------------AAATTAA-TTA-CT---TC-----------GC-T--T-ATTCCG--TA-----ATTAGGTTTGATCC--CC---C-ACCAT-CAC--CCA----CA------AG--GTTGTTTCAATTT--GTA-CTTCTT----TCAAATGTAACA----T--CT--GCAAG---TTTTTT-AAC-A-TTTGCAT---AT-TCCTATA---------GTAAT-----------------CA-AAT--TTAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT-attat
gi|8 : -T--TTACTCCG--TAA----TTTAT-CTTGATCC--CC---C-ACCAC-CCA--C------------A-AA--GTTGTTTCAAATT--ATA-CTTCTT----TCACCTGTGCCA----T--ATTCAAAAG------TTTGAAA-A-TTTGCAT---AT-TCCTACA---------GT-----GA--CAGA-ATAAACCA-AAG--TTAAAG-GGCAAATA---A---------A-A-A------------AACTCTC-ACATTTTAccgcgatgataataacatgattat
gi|9 : atcatgttattcgctttgcagaaattgaaaattcag--TTGTTCCA--T-T----ATCAT-C---CTCC--CC---C-ACCA--CCAATCCA----CA------AG--GTTGTTTTAATTT--ATA-CT--TT----TCACTTGTGTCATG--T--A---AAAAG-----TTTTGAAA-A-TTTGCAT---AT-TCCCAT--------------------------GTAAACCA-AAT--TTAAAG-GGCACATA---ACTCTT-ACTA-A-A--GGAAA-AA-TAACTCTT-GCACTTTATCGCGGTGCAAATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAACTGCAATAAACATGGTGGGCACTAAAACCCGGAAAGTAATAAATAAACATTACCATGGCCATCCTCTCTTTCCACTGTTGGTCCCGCTCGAAATGACGGTGGGCTACTTGGAGGTGCGACATTTACCCTACTGTTTTCTTCACTGCCCCTTAACTTTAAATTATATCCATCCAAGAACGATTGTCCGCTGGGCTACATAATATTTCCACTATTTGCATGAGAAGGGTGCGTGTTTTTGTGTTGTTGATTTTTTTTGTTGAAAAAATGATAGTTGAAGTATTTTACTCCGGGGA
Unaligned ( gi|4 ): CGAAATACGTAGGTACCTTGTGAGGCGACATTTACTTATGTTTTATTACTGCCCACTAACTTTATATATCCATCCAAGACGTATTGCCCCTGGTACCATTACTATTCAAATCCTATTTGGCATGTGAGAAGGTGCGTGTTTTTTGTTGTTGGATTTTTTTTCTTGTAAAAATCGACAGTGAAGCTAATATTTAAACTCGGGAATATAGCACGCATTTTCAATGAGACCAAGTTGAAACTTTGCTGCTTTCTGTTCTTAAACTACAAACTGTTTTGAAACGT
Unaligned ( gi|5 ): GTTATTGCCCAGTTACCTTAATATCTCCATCCAAACGATTGACCCAGGGTAGATACGATTTCATATCTTTTTGGCCTGAGAAGTATGCGTGGTGTTGTGTTGTTCGTTTGTTTTGTTTGAAATTCGATAGTGAAGTAATAGTTAACTCTGGGGACACATAACACGTCTTTTCAATGGGTCAAAAATATGAACATTTGCTACTTTCTGTCTCTTAAACGAAAAACACTTTTTAAAACGTTTTA
Unaligned ( gi|10 ): TTACTGTCCATTCACCTGTATATTAATCCAACCAAATGATTGTCCCAGGGTAGATAGTATTTCACACCTTTCTGGCATGAGAAGGGTGCATGTTGTTTTTGGATAAGGTGCTTAAGGTTTTTTTTTCAGGTGAAAATCAATATTTTTAAACTCCTGAGACATATAGCACGCTTTTTC
Unaligned ( gi|13 ): AATGCGGTATTTGCATTAATTAATCTAGGGATTTACAAGAAATGATGGCAAAAATAGACTTACATCGTGGCGCCTATAACCTGACAAAATCCACGCTTGTCTCACCGGAAATAACAACATACAAGTAATACGCAGGCTAA
Unaligned ( gi|22 ): CCCGCAATAAACACGCTGAGCACTAAAACCCGGAAAGTAATCAATAAACATTACATGAC
Alignments
lowQualScore : 33333 1 22 1 11 1 11 22 111 5555555555555555555555 1 111111111 2222222222 444444444444 111 111111 222222 111111111 11111111 22222222
lowQualScore : 33333 3 00 7 3 6 0 2 88 3 9 88 00 000 4 2 6666666666666666666666 4 0 555555555 55 44 4444444444 4 2 66 888 5 55 888 111111111111 99 0 1 333 4 9999 1 1 999999 111111 0 3 3 4 555 3 999999999 33333333 3 0 3 44 3 1 555 3 3 3 55 3 7 3 33333333 4
lowQualScore : ..... . .. . . . . . .. . . .. .. ... . . ...................... . . ......... .. .. .......... . . .. ... . .. ... ............ .. . . ... . .... . . ...... ...... . . . . ... . ......... ........ . . . .. . . ... . . . .. . . . ........ .
lowQualScore : 33333 3 77 3 7 7 7 0 33 3 0 33 77 222 4 7 0000000000000000000000 4 8 777777777 55 88 6666666666 0 3 11 888 0 33 999 777777777777 55 1 1 000 4 4444 3 0 666666 222222 8 6 6 5 888 6 555555555 44444444 3 8 3 66 3 0 888 3 6 6 00 6 3 6 99999999 5
consensus : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TATCAT--GTATTT-CGGCAN--TATCATGTTATTC-GTCCCGC-------T--T---ATTCC---GTATTTA-TTAGCT---TGTTA-GCT--TT-ATTCCG--TAT----ATTAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
Reference ( family-3017 ) : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TATCGT--GTATTT-CGGCAN--TATCATGTTATTC-GTCCCGC-------T--TT--ATTCC---GTATTTA-TTAGCT---TGTTA-GCT--TT-ATTCCG--TAT----ATTAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATAT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTATCGCGGTGCGAATAACATG
gi|1 : TGTTGCATAAGGATTATGGA--GACTAATTGGTAA-AACGACAATTCGC-TATACTAGGTATTT-TGGCAGAGTATCATGTTATTTTGTAGCGC-------TGGTCGAATTCCCCAGTATTTAGTTACCT---TGTTTTGCT--TTTATGTCGGCTATTTAAGTTAG-CTTGTTCG--TC---C-A-CAT-C----CCA----CACCCTA-AGCAGTT-TTTCTTTTTA-ATAGCTTCTTAAAGACACTTGTTACA-A----GACA-GT--TTTTTTGAAA-ACTCTG-ATTAAAT-TCCTGAA---------GTAACTTAA--CGGAGATAAATAACAATTCTTAAAGAAGAAGATACCGATACTTGACTATT-A--GG-AATAA-GTACTCTTA
gi|11 : CNN-NNN--NNA----CAACCCACAAA-GTTGTTTTGATTT---TA-GTTTTT----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-ACTGCAT---AT-TCTTATT---------GTAATTCAA--CAGA-ATAAACCA-AAT--TTA-------------------------A-A-A--GG-CA-AA-TAACTCTTACACTTTATCGCGGTGTGAATAacgtattataatgtgtgcgttttgcatataagttaatcacgggatttacatgagaaatgatggaaagaatagcttacatcgggaccgataacgactggacataataatccgattgtctcaagccggaaatacagacatacaaggtaatagtgcaggctaatgactgccataaactgatgaaggcactcaacccgggaagtaactagcataaacattacatggaatcctcagttaaatccactgttgacgagtagccgggtcaggaaatggagcggtgtgtgaatattggagtgagacattttacctcaatgttttcattactgcacttgacactattgatatatgcaatgcaaacgttgtgtctggtagatattctccaccctaattttggcatgagaagggtgcgtgtttttttgttgttgattttttatgtgaaaatcgatagtgaagtaatatttaactttcggggagatatagccgtagctagaccaattgttcaatgggacccgaaagtttagaactttgcgtgctttctgcattcgctccttaactacaaaactgttttttgaaacattcta
gi|12 : atcctgttattagcatcgcgatgGTTGCAT-----CT-TGGACAGAC-AAAGTGTAACAATG-CA--TCGCATATCAT--GTATT--CGGCAG--TGTCATGT-ATTT-G-CCCGC-------T--T---ATTCC---GTATTTA-TTAGCT-----TTA--CTCATT--TTCC-----T----ATTAG-C-TGTTCCGTCCATTC-ACC-C-CCA--CCA----C-TCCTACAG--GT
gi|14 : GTTATCT-GCACCGC-------T--T---ATTCC---GT------TTAGCT---TGTT
gi|14 : gcataatacc--TT-ATTCCG--T-------TTAG-CTTGTTCC--CC---CCATCAT-CCC--CCATCACCACCCTCTAG--GTTGTTTTAATTTAAATA-CTTCTT----TCAAATGTAATATTTTTAAAAA-G----TTTTTGAAA-A-TTTGCAT---Accccccatcatcccccatcaccaccctctaggttgttttaatttaaatacttctttcaaatgtaatatttttaaaaagtttttgaaaatttgcata
gi|15 : gcataataccgttatctgcaccgcGGCAT--TATCATGTTATTC-GACCCGC-----------------------TATTTA-CAA------TG-TA-GCT--TT-ATTCCA--TAT-----TTAG-CTTCTTCC--
gi|16 : cactggcatgagtaccggtcatctgggAG--GTGGTTTTAATTT--CTA-CTTTTT----TCACTTGTGCCATGT---GAAA------TTTTTGAAA-A-TATGCAT---AT-TCCTATA---------GTAATGCAA--GGGA-ATAACCCA-AAT--TTAATG-GACAAACA---ACTCCT-ACtatttagctttattccgtatttagcttgttcct
gi|17 : tcacaT---AT-TCTTATATAGTACATTGTAATTCAA--ACGA-ATAAATCA-AAA--TCAAAG-AGAAGTTA---ACTCTT-ACTA-A-AGGGG-AA-AA-TAACTCTT--------CCGCGATGCCAATAACATG
gi|18 : gTTTTTGAAATA-T-TGTAT---ATCTCCTCTA---------GTAATT---------------CCA-ACA--TTAAAG-AGAAAGCA---ACTCTT-ACTA-ACA--GG-AA-AA-TAACTCTTTC-------CGCGATGCTAATAACATGattgtg
gi|19 : ttacaacgA-A-TATGCAA---AT-TTTCAAA---------AAAGCTAAATACGGA-ATA-----------TTAATG-AGCAAATA---AGTTTT-ACTA-A-A--GG-AA-AAATAACTCTTACACTTTATTGCAGATCGAATAGCAa
gi|2 : atTGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAGTGGCA--TTGC-TATCAT--GTATTTGCGGCAT--TATCATGTTATTT-GTCCCGC-------T--TT--ATTCC---GTATTTA-TTAGCT---TGTTA-GCT--TT-ATTCTGTATAT----ATTAG-CTTGTTCC--TC---C-ACCATGCCA--CCAAC--TACCCTACAG--ATTATTTCTTTTT--ATA-CTTCTT----TCACTTGTAACA-AA---AAAA-GGTTTTTTTTGAGA-A-TTTGCAT---AT-TCCTATA---------GTAACTTAA--CGGA-ATAAATCA-CAT--TTAAAG-AGAAGATA---ACTTTT-ACTT-A-A--GG-AATAA-TAACTCTTACATTTTATAGTGGGACGAATAACATG
gi|20 : -ATGAATCA-AAT--TTAAAA-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-CA-TAACTCTT
gi|21 : ATCAGGTTATTC-GTCCCGC--------------A-------GGA---A-TTGACT---ATTTA-G-T--TT-ATTCCG--TAT----A-TAG-CTccgcaatgctaaattcagctaataacatgattatg
gi|23 : taGGCAT--CATCATGTTATTC-GTCCCACTATTTGGT--TT--ATTCC---GTATTTA-attttg
gi|24 : agGCAA--TATCATGTTATTC-GTCCCAC-----------T--ATTTC---GTg
gi|6 : ATTTA-ATATCTACATGT-A-GCT--T--ATTCCG--TAA----TTTGA-TTTGATCC--CC---C-ACCAT-CCC--TCA----CA--------------------TTT--GTA-CTTCTT----TGAAATGTAACATTT---GCAA-G---TTTTTTGAAA-A-TATGCAT---AT-TCCTATATA-------GTAATTCAA--CGGA-ATAAATCA-AAT--TCAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGCTAATAACATGtta
gi|7 : tgttattagcatcgcaaATCATGTTATTA-GCATCGC----------------------AAATTAA-TTA-CT---TC----GCT--T--ATTCCG--TA-----ATTAGGTTTGATCC--CC---C-ACCAT-CAC--CCA----CA------AG--GTTGTTTCAATTT--GTA-CTTCTT----TCAAATGTAACATCT---GCAA-G---TTTTTT-AAC-A-TTTGCAT---AT-TCCTATA---------GTAAT-----------------CA-AAT--TTAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGATAATAACATGattat
gi|8 : T--TT-ACTCCG--TAA----TTTAT-CTTGATCC--CC---C-ACCAC-CCA--C------------A-AA--GTTGTTTCAAATT--ATA-CTTCTT----TCACCTGTGCCATATTC-AAAA-G------TTTGAAA-A-TTTGCAT---AT-TCCTACA---------GT-----GA--CAGA-ATAAACCA-AAG--TTAAAG-GGCAAATA---A---------A-A-A------------AACTCTCACATTTTAattat
gi|9 : atcatgttattcgctttgcagaaattgaaaattcag--TT-GTTCCA--T-T----ATCAT-CCT---CC--CC---C-ACCA--CCAATCCA----CA------AG--GTTGTTTTAATTT--ATA-CTT--T----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-TTTGCAT---AT-TCCCATG--------------------------TAAACCA-AAT--TTAAAG-GGCACATA---ACTCTT-ACTA-A-A--GGAAA-AA-TAACTCTTGCACTTTATCGCGGTGCAAATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAACTGCAATAAACATGGTGGGCACTAAAACCCGGAAAGTAATAAATAAACATTACCATGGCCATCCTCTCTTTCCACTGTTGGTCCCGCTCGAAATGACGGTGGGCTACTTGGAGGTGCGACATTTACCCTACTGTTTTCTTCACTGCCCCTTAACTTTAAATTATATCCATCCAAGAACGATTGTCCGCTGGGCTACATAATATTTCCACTATTTGCATGAGAAGGGTGCGTGTTTTTGTGTTGTTGATTTTTTTTGTTGAAAAAATGATAGTTGAAGTATTTTACTCCGGGGA
Unaligned ( gi|4 ): CGAAATACGTAGGTACCTTGTGAGGCGACATTTACTTATGTTTTATTACTGCCCACTAACTTTATATATCCATCCAAGACGTATTGCCCCTGGTACCATTACTATTCAAATCCTATTTGGCATGTGAGAAGGTGCGTGTTTTTTGTTGTTGGATTTTTTTTCTTGTAAAAATCGACAGTGAAGCTAATATTTAAACTCGGGAATATAGCACGCATTTTCAATGAGACCAAGTTGAAACTTTGCTGCTTTCTGTTCTTAAACTACAAACTGTTTTGAAACGT
Unaligned ( gi|5 ): GTTATTGCCCAGTTACCTTAATATCTCCATCCAAACGATTGACCCAGGGTAGATACGATTTCATATCTTTTTGGCCTGAGAAGTATGCGTGGTGTTGTGTTGTTCGTTTGTTTTGTTTGAAATTCGATAGTGAAGTAATAGTTAACTCTGGGGACACATAACACGTCTTTTCAATGGGTCAAAAATATGAACATTTGCTACTTTCTGTCTCTTAAACGAAAAACACTTTTTAAAACGTTTTA
Unaligned ( gi|10 ): TTACTGTCCATTCACCTGTATATTAATCCAACCAAATGATTGTCCCAGGGTAGATAGTATTTCACACCTTTCTGGCATGAGAAGGGTGCATGTTGTTTTTGGATAAGGTGCTTAAGGTTTTTTTTTCAGGTGAAAATCAATATTTTTAAACTCCTGAGACATATAGCACGCTTTTTC
Unaligned ( gi|13 ): AATGCGGTATTTGCATTAATTAATCTAGGGATTTACAAGAAATGATGGCAAAAATAGACTTACATCGTGGCGCCTATAACCTGACAAAATCCACGCTTGTCTCACCGGAAATAACAACATACAAGTAATACGCAGGCTAA
Unaligned ( gi|22 ): CCCGCAATAAACACGCTGAGCACTAAAACCCGGAAAGTAATCAATAAACATTACATGAC
Alignments
lowQualScore : 33333 1 22 1 11 1 11 22 111 11111111 333333333333333 1 2222222222 444444444444 111 11111 222222 111111111 11111111 33333333
lowQualScore : 33333 3 00 7 3 6 0 2 88 3 88 00 000 4 1 3 44444444 222222222222222 4 0 0 888 5 55 0 55 1111111111 4 2 66 888 5 55 888 111111111111 99 0 1 333 4 9999 1 1 55555 111111 0 3 3 4 555 3 999999999 33333333 3 0 3 44 3 1 555 3 3 3 55 3 7 3 77777777 1
lowQualScore : ..... . .. . . . . . .. . .. .. ... . . . ........ ............... . . . ... . .. . .. .......... . . .. ... . .. ... ............ .. . . ... . .... . . ..... ...... . . . . ... . ......... ........ . . . .. . . ... . . . .. . . . ........ .
lowQualScore : 33333 3 77 3 7 7 7 0 33 3 33 77 222 0 4 0 55555555 999999999999999 4 8 4 444 0 55 8 55 6666666666 0 3 11 888 0 33 999 777777777777 55 1 1 000 4 4444 3 0 88888 222222 8 6 6 5 888 6 555555555 44444444 3 8 3 66 3 0 888 3 6 6 00 6 3 6 99999999 0
consensus : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAN--TATCATGTTA-TTCGTCCC--------GCT--T---ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCCG--TAT----AT--TAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
Reference ( family-3017 ) : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAN--TATCATGTTA-TTCGTCCC--------GCT--T---ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCCG--TAT----AT--TAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
gi|1 : TGTTGCATAAGGATTATGGA--GACTAATTGGTAA-AACGACAATTCGC-TATACTAGGTATTT-TGGCAGAGTATCATGTTATTTTGTAGC--------GCTGGTCGAATTCCCCAGTATTTAGTTACCTTGTTTTGCTT--TTATGTCGGCTATTTAAGT--TAG-CTTGTTCG--TC---C-A-CAT-C----CCA----CACCCTA-AGCAGTT-TTTCTTTTTA-ATAGCTTCTTAAAGACACTTGTTACA--A---GACA-GT--TTTTTTGAAA-ACTCTG-ATTAAAT-TCCTGAA---------GTAACTTAA--CGGAGATAAATAACAATTCTTAAAGAAGAAGATACCGATACTTGACTATT-A--GG-AATAA-GTACTCTTA
gi|11 : CNN-NNN--NNA----CAACCCACAAA-GTTGTTTTGATTT---TA-GTTTTT----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-ACTGCAT---AT-TCTTATT---------GTAATTCAA--CAGA-ATAAACCA-AAT--TTA-------------------------A-A-A--GG-CA-AA-TAACTCTTACACTTTATCGCGGTGTGAATAacgtattataatgtgtgcgttttgcatataagttaatcacgggatttacatgagaaatgatggaaagaatagcttacatcgggaccgataacgactggacataataatccgattgtctcaagccggaaatacagacatacaaggtaatagtgcaggctaatgactgccataaactgatgaaggcactcaacccgggaagtaactagcataaacattacatggaatcctcagttaaatccactgttgacgagtagccgggtcaggaaatggagcggtgtgtgaatattggagtgagacattttacctcaatgttttcattactgcacttgacactattgatatatgcaatgcaaacgttgtgtctggtagatattctccaccctaattttggcatgagaagggtgcgtgtttttttgttgttgattttttatgtgaaaatcgatagtgaagtaatatttaactttcggggagatatagccgtagctagaccaattgttcaatgggacccgaaagtttagaactttgcgtgctttctgcattcgctccttaactacaaaactgttttttgaaacattcta
gi|12 : atcctgttattagcatcgcgatgGTTGCAT-----CT-TGGACAGAC-AAAGTGTAACAATG-CA--TCGCATAT--CATGTATT--CGGCAG--TGTCATGT-A-TTTG-CCC--------GCT--T---ATTCC---GTATTTA-TTAGCT---TTA-C-TCATT-TTCC-----T----AT--TAG-C-TGTTCCGTCCATTC-ACC-C-CCA--CCA----C-TCCTACAG--GT
gi|14 : GTTA-TCTGCACC--------GCT--T---ATTCC---GT------TTAGCTTG-TT
gi|14 : gcataatacc--TTATTCCG--T-------T--TAG-CTTGTTCC--CC---CCATCAT-CCC--CCATCACCACCCTCTAG--GTTGTTTTAATTTAAATA-CTTCTT----TCAAATGTAATATTTTTAAAAA-G----TTTTTGAAA-A-TTTGCAT---Accccccatcatcccccatcaccaccctctaggttgttttaatttaaatacttctttcaaatgtaatatttttaaaaagtttttgaaaatttgcata
gi|15 : gcataataccgttatctgcaccgcGGCAT--TATCATGTTA-TTCGACCC--------GC----------------TATTTA-CAA---TG--TAGC-T--TTATTCCA--TAT-----T--TAG-CTTCTTCC--
gi|16 : cactggcatgagtaccggtcatctgggAG--GTGGTTTTAATTT--CTA-CTTTTT----TCACTTGTGCCATGT---GAAA------TTTTTGAAA-A-TATGCAT---AT-TCCTATA---------GTAATGCAA--GGGA-ATAACCCA-AAT--TTAATG-GACAAACA---ACTCCT-ACtatttagctttattccgtatttagcttgttcct
gi|17 : tcacaT---AT-TCTTATATAGTACATTGTAATTCAA--ACGA-ATAAATCA-AAA--TCAAAG-AGAAGTTA---ACTCTT-ACTA-A-AGGGG-AA-AA-TAACTCTT--------CCGCGATGCCAATAACATG
gi|18 : gTTTTTGAAATA-T-TGTAT---ATCTCCTCTA---------GTAATT---------------CCA-ACA--TTAAAG-AGAAAGCA---ACTCTT-ACTA-ACA--GG-AA-AA-TAACTCTT----T---CCGCGATGCTAATAACATGattgtg
gi|19 : ttacaacgA-A-TATGCAA---AT-TTTCAAA---------AAAGCTAAATACGGA-ATA-----------TTAATG-AGCAAATA---AGTTTT-ACTA-A-A--GG-AA-AAATAACTCTTACACTTTATTGCAGATCGAATAGCAa
gi|2 : atTGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAGTGGCA--TTGC-TAT--CATGTATTTGCGGCAT--TATCATGTTA-TTTGTCCC--------GCT--TT--ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCTG--TAT----ATATTAG-CTTGTTCC--TC---C-ACCATGCCA--CCAAC--TACCCTACAG--ATTATTTCTTTTT--ATA-CTTCTT----TCACTTGTAACAAA----AAAA-GGTTTTTTTTGAGA-A-TTTGCAT---AT-TCCTATA---------GTAACTTAA--CGGA-ATAAATCA-CAT--TTAAAG-AGAAGATA---ACTTTT-ACTT-A-A--GG-AATAA-TAACTCTTACATTTTATAGTGGGACGAATAACATG
gi|20 : -ATGAATCA-AAT--TTAAAA-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-CA-TAACTCTT--------CCGCAATGCTAA
gi|21 : ATCAGGTTA-TTCGTCCC--------GC-------A-------GGA---A-TTGACTAT-TTAG--T--TTATTCCG--TAT----A---TAG-CTattcagctaataacatgattatg
gi|23 : taGGCAT--CATCATGTTA-TTCGTCCCACTATTTGGTT--T---ATTCC---GTATTTA-attttg
gi|24 : agGCAA--TATCATGTTA-TTCGTCCC--------AC---T---ATTTC---GTg
gi|6 : TGTTA-TTAGCATC--------GCA--A---ATTTA---ATATCTA-----CATG-T-AGC-T--T-ATTCCG--TAA----TT--TGA-TTTGATCC--CC---C-ACCAT-CCC--TCA----CA--------------------TTT--GTA-CTTCTT----TGAAATGTAACATTT---GCAA-G---TTTTTTGAAA-A-TATGCAT---AT-TCCTATATA-------GTAATTCAA--CGGA-ATAAATCA-AAT--TCAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGCTAATAACATGtta
gi|7 : ATCATGTTA-TTAGCATC--------GC---------------AAATTAA-TTA-CTTC----GC-T--T-ATTCCG--TA-----AT--TAGGTTTGATCC--CC---C-ACCAT-CAC--CCA----CA------AG--GTTGTTTCAATTT--GTA-CTTCTT----TCAAATGTAACATCT---GCAA-G---TTTTTT-AAC-A-TTTGCAT---AT-TCCTATA---------GTAAT-----------------CA-AAT--TTAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGATAATAACATGattat
gi|8 : -T--TTACTCCG--TAA----TT--TAT-CTTGATCC--CC---C-ACCAC-CCA--C------------A-AA--GTTGTTTCAAATT--ATA-CTTCTT----TCACCTGTGCCATATTC-AAAA-G------TTTGAAA-A-TTTGCAT---AT-TCCTACA---------GT-----GA--CAGA-ATAAACCA-AAG--TTAAAG-GGCAAATA---A---------A-A-A------------AACTCTCACATTTTAattat
gi|9 : atcatgttattcgctttgcagaaattgaaaattcag--TTGTTCCA--T-T----AT--CAT-CCT---CC--CC---C-ACCA--CCAATCCA----CA------AG--GTTGTTTTAATTT--ATA-CTT--T----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-TTTGCAT---AT-TCCCATG--------------------------TAAACCA-AAT--TTAAAG-GGCACATA---ACTCTT-ACTA-A-A--GGAAA-AA-TAACTCTTGCACTTTATCGCGGTGCAAATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAACTGCAATAAACATGGTGGGCACTAAAACCCGGAAAGTAATAAATAAACATTACCATGGCCATCCTCTCTTTCCACTGTTGGTCCCGCTCGAAATGACGGTGGGCTACTTGGAGGTGCGACATTTACCCTACTGTTTTCTTCACTGCCCCTTAACTTTAAATTATATCCATCCAAGAACGATTGTCCGCTGGGCTACATAATATTTCCACTATTTGCATGAGAAGGGTGCGTGTTTTTGTGTTGTTGATTTTTTTTGTTGAAAAAATGATAGTTGAAGTATTTTACTCCGGGGA
Unaligned ( gi|4 ): CGAAATACGTAGGTACCTTGTGAGGCGACATTTACTTATGTTTTATTACTGCCCACTAACTTTATATATCCATCCAAGACGTATTGCCCCTGGTACCATTACTATTCAAATCCTATTTGGCATGTGAGAAGGTGCGTGTTTTTTGTTGTTGGATTTTTTTTCTTGTAAAAATCGACAGTGAAGCTAATATTTAAACTCGGGAATATAGCACGCATTTTCAATGAGACCAAGTTGAAACTTTGCTGCTTTCTGTTCTTAAACTACAAACTGTTTTGAAACGT
Unaligned ( gi|5 ): GTTATTGCCCAGTTACCTTAATATCTCCATCCAAACGATTGACCCAGGGTAGATACGATTTCATATCTTTTTGGCCTGAGAAGTATGCGTGGTGTTGTGTTGTTCGTTTGTTTTGTTTGAAATTCGATAGTGAAGTAATAGTTAACTCTGGGGACACATAACACGTCTTTTCAATGGGTCAAAAATATGAACATTTGCTACTTTCTGTCTCTTAAACGAAAAACACTTTTTAAAACGTTTTA
Unaligned ( gi|10 ): TTACTGTCCATTCACCTGTATATTAATCCAACCAAATGATTGTCCCAGGGTAGATAGTATTTCACACCTTTCTGGCATGAGAAGGGTGCATGTTGTTTTTGGATAAGGTGCTTAAGGTTTTTTTTTCAGGTGAAAATCAATATTTTTAAACTCCTGAGACATATAGCACGCTTTTTC
Unaligned ( gi|13 ): AATGCGGTATTTGCATTAATTAATCTAGGGATTTACAAGAAATGATGGCAAAAATAGACTTACATCGTGGCGCCTATAACCTGACAAAATCCACGCTTGTCTCACCGGAAATAACAACATACAAGTAATACGCAGGCTAA
Unaligned ( gi|22 ): CCCGCAATAAACACGCTGAGCACTAAAACCCGGAAAGTAATCAATAAACATTACATGAC
Alignments
lowQualScore : 33333 1 22 1 11 1 11 22 111 11111111 333333333333333 1 2222222222 444444444444 111 11111 222222 111111111 11111111 33333333
lowQualScore : 33333 3 00 7 3 6 0 2 88 3 88 00 000 4 1 3 44444444 222222222222222 4 0 0 888 5 55 0 55 1111111111 4 2 66 888 5 55 888 111111111111 99 0 1 333 4 9999 1 1 55555 111111 0 3 3 4 555 3 999999999 33333333 3 0 3 44 3 1 555 3 3 3 55 3 7 3 77777777 1
lowQualScore : ..... . .. . . . . . .. . .. .. ... . . . ........ ............... . . . ... . .. . .. .......... . . .. ... . .. ... ............ .. . . ... . .... . . ..... ...... . . . . ... . ......... ........ . . . .. . . ... . . . .. . . . ........ .
lowQualScore : 33333 3 77 3 7 7 7 0 33 3 33 77 222 0 4 0 55555555 999999999999999 4 8 4 444 0 55 8 55 6666666666 0 3 11 888 0 33 999 777777777777 55 1 1 000 4 4444 3 0 88888 222222 8 6 6 5 888 6 555555555 44444444 3 8 3 66 3 0 888 3 6 6 00 6 3 6 99999999 0
consensus : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAN--TATCATGTTA-TTCGTCCC--------GCT--T---ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCCG--TAT----AT--TAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
Reference ( family-3017 ) : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAN--TATCATGTTA-TTCGTCCC--------GCT--T---ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCCG--TAT----AT--TAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
gi|1 : TGTTGCATAAGGATTATGGA--GACTAATTGGTAA-AACGACAATTCGC-TATACTAGGTATTT-TGGCAGAGTATCATGTTATTTTGTAGC--------GCTGGTCGAATTCCCCAGTATTTAGTTACCTTGTTTTGCTT--TTATGTCGGCTATTTAAGT--TAG-CTTGTTCG--TC---C-A-CAT-C----CCA----CACCCTA-AGCAGTT-TTTCTTTTTA-ATAGCTTCTTAAAGACACTTGTTACA--A---GACA-GT--TTTTTTGAAA-ACTCTG-ATTAAAT-TCCTGAA---------GTAACTTAA--CGGAGATAAATAACAATTCTTAAAGAAGAAGATACCGATACTTGACTATT-A--GG-AATAA-GTACTCTTA
gi|11 : CNN-NNN--NNA----CAACCCACAAA-GTTGTTTTGATTT---TA-GTTTTT----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-ACTGCAT---AT-TCTTATT---------GTAATTCAA--CAGA-ATAAACCA-AAT--TTA-------------------------A-A-A--GG-CA-AA-TAACTCTTACACTTTATCGCGGTGTGAATAacgtattataatgtgtgcgttttgcatataagttaatcacgggatttacatgagaaatgatggaaagaatagcttacatcgggaccgataacgactggacataataatccgattgtctcaagccggaaatacagacatacaaggtaatagtgcaggctaatgactgccataaactgatgaaggcactcaacccgggaagtaactagcataaacattacatggaatcctcagttaaatccactgttgacgagtagccgggtcaggaaatggagcggtgtgtgaatattggagtgagacattttacctcaatgttttcattactgcacttgacactattgatatatgcaatgcaaacgttgtgtctggtagatattctccaccctaattttggcatgagaagggtgcgtgtttttttgttgttgattttttatgtgaaaatcgatagtgaagtaatatttaactttcggggagatatagccgtagctagaccaattgttcaatgggacccgaaagtttagaactttgcgtgctttctgcattcgctccttaactacaaaactgttttttgaaacattcta
gi|12 : atcctgttattagcatcgcgatgGTTGCAT-----CT-TGGACAGAC-AAAGTGTAACAATG-CA--TCGCATAT--CATGTATT--CGGCAG--TGTCATGT-A-TTTG-CCC--------GCT--T---ATTCC---GTATTTA-TTAGCT---TTA-C-TCATT-TTCC-----T----AT--TAG-C-TGTTCCGTCCATTC-ACC-C-CCA--CCA----C-TCCTACAG--GT
gi|14 : GTTA-TCTGCACC--------GCT--T---ATTCC---GT------TTAGCTTG-TT
gi|14 : gcataatacc--TTATTCCG--T-------T--TAG-CTTGTTCC--CC---CCATCAT-CCC--CCATCACCACCCTCTAG--GTTGTTTTAATTTAAATA-CTTCTT----TCAAATGTAATATTTTTAAAAA-G----TTTTTGAAA-A-TTTGCAT---Accccccatcatcccccatcaccaccctctaggttgttttaatttaaatacttctttcaaatgtaatatttttaaaaagtttttgaaaatttgcata
gi|15 : gcataataccgttatctgcaccgcGGCAT--TATCATGTTA-TTCGACCC--------GC----------------TATTTA-CAA---TG--TAGC-T--TTATTCCA--TAT-----T--TAG-CTTCTTCC--
gi|16 : cactggcatgagtaccggtcatctgggAG--GTGGTTTTAATTT--CTA-CTTTTT----TCACTTGTGCCATGT---GAAA------TTTTTGAAA-A-TATGCAT---AT-TCCTATA---------GTAATGCAA--GGGA-ATAACCCA-AAT--TTAATG-GACAAACA---ACTCCT-ACtatttagctttattccgtatttagcttgttcct
gi|17 : tcacaT---AT-TCTTATATAGTACATTGTAATTCAA--ACGA-ATAAATCA-AAA--TCAAAG-AGAAGTTA---ACTCTT-ACTA-A-AGGGG-AA-AA-TAACTCTT--------CCGCGATGCCAATAACATG
gi|18 : gTTTTTGAAATA-T-TGTAT---ATCTCCTCTA---------GTAATT---------------CCA-ACA--TTAAAG-AGAAAGCA---ACTCTT-ACTA-ACA--GG-AA-AA-TAACTCTT----T---CCGCGATGCTAATAACATGattgtg
gi|19 : ttacaacgA-A-TATGCAA---AT-TTTCAAA---------AAAGCTAAATACGGA-ATA-----------TTAATG-AGCAAATA---AGTTTT-ACTA-A-A--GG-AA-AAATAACTCTTACACTTTATTGCAGATCGAATAGCAa
gi|2 : atTGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAGTGGCA--TTGC-TAT--CATGTATTTGCGGCAT--TATCATGTTA-TTTGTCCC--------GCT--TT--ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCTG--TAT----ATATTAG-CTTGTTCC--TC---C-ACCATGCCA--CCAAC--TACCCTACAG--ATTATTTCTTTTT--ATA-CTTCTT----TCACTTGTAACAAA----AAAA-GGTTTTTTTTGAGA-A-TTTGCAT---AT-TCCTATA---------GTAACTTAA--CGGA-ATAAATCA-CAT--TTAAAG-AGAAGATA---ACTTTT-ACTT-A-A--GG-AATAA-TAACTCTTACATTTTATAGTGGGACGAATAACATG
gi|20 : -ATGAATCA-AAT--TTAAAA-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-CA-TAACTCTT--------CCGCAATGCTAA
gi|21 : ATCAGGTTA-TTCGTCCC--------GC-------A-------GGA---A-TTGACTAT-TTAG--T--TTATTCCG--TAT----A---TAG-CTattcagctaataacatgattatg
gi|23 : taGGCAT--CATCATGTTA-TTCGTCCCACTATTTGGTT--T---ATTCC---GTATTTA-attttg
gi|24 : agGCAA--TATCATGTTA-TTCGTCCC--------AC---T---ATTTC---GTg
gi|6 : TGTTA-TTAGCATC--------GCA--A---ATTTA---ATATCTA-----CATG-T-AGC-T--T-ATTCCG--TAA----TT--TGA-TTTGATCC--CC---C-ACCAT-CCC--TCA----CA--------------------TTT--GTA-CTTCTT----TGAAATGTAACATTT---GCAA-G---TTTTTTGAAA-A-TATGCAT---AT-TCCTATATA-------GTAATTCAA--CGGA-ATAAATCA-AAT--TCAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGCTAATAACATGtta
gi|7 : ATCATGTTA-TTAGCATC--------GC---------------AAATTAA-TTA-CTTC----GC-T--T-ATTCCG--TA-----AT--TAGGTTTGATCC--CC---C-ACCAT-CAC--CCA----CA------AG--GTTGTTTCAATTT--GTA-CTTCTT----TCAAATGTAACATCT---GCAA-G---TTTTTT-AAC-A-TTTGCAT---AT-TCCTATA---------GTAAT-----------------CA-AAT--TTAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGATAATAACATGattat
gi|8 : -T--TTACTCCG--TAA----TT--TAT-CTTGATCC--CC---C-ACCAC-CCA--C------------A-AA--GTTGTTTCAAATT--ATA-CTTCTT----TCACCTGTGCCATATTC-AAAA-G------TTTGAAA-A-TTTGCAT---AT-TCCTACA---------GT-----GA--CAGA-ATAAACCA-AAG--TTAAAG-GGCAAATA---A---------A-A-A------------AACTCTCACATTTTAattat
gi|9 : atcatgttattcgctttgcagaaattgaaaattcag--TTGTTCCA--T-T----AT--CAT-CCT---CC--CC---C-ACCA--CCAATCCA----CA------AG--GTTGTTTTAATTT--ATA-CTT--T----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-TTTGCAT---AT-TCCCATG--------------------------TAAACCA-AAT--TTAAAG-GGCACATA---ACTCTT-ACTA-A-A--GGAAA-AA-TAACTCTTGCACTTTATCGCGGTGCAAATAAC
blockSeqs : . . CA T T C G . A . TG G . T C ACTATTTG TTTATTCC . G TT . CA . ATATAT G T GT ATT C TG AAT TCACCACCCTCT A G AAA . . T T TTTTA GGTTT T . C . C TAGTACATT TAAATACG . . . . C . . . C GG A T A ACACTTTA C
blockSeqs : . . A . C C . . . . . T . T A . TTATTCC . G TT . . . AATT . T . . . N N ACTACCCTAC . A C . . A A ATTC AGT . . T . . TA TCAACA . . . . A . . . . . . . . ACATTTTA T
blockSeqs : T . C T . TTATTCC . G TT . . . AATT . T . . . C A CAACCCAC . A A . . T C GT AGT . . A . . . GCAAGG . . . . A . . . . . . . . ACATTTTA G
blockSeqs : T . T T . TTATTCC . A TT . . . TAT . T . . . T C CTCCTAC . T G . . T A GT GT . . A . . . TCAAAC . . . . C . . . . . . . . GCACTTTA G
blockSeqs : A . C T . AAATTTA . . T . . . ATT . A . . . T A CA . A G . . A A TT GT . . T . . . TTAACG . . . . A . . . . . . . . T T
blockSeqs : . C T . TATTTC . . T . . . ATA . A . . . T C CA . A A . . A A CT G . . A . . . TCAACG . . . . A . . . . . . . . . T
blockSeqs : . C C . A . . . . . . AAT . A . . . C C CA . A A . . C C GT G . . T . . . GACA . . . . A . . . . . . . . . T
blockSeqs : . A C . . . . . TAT . . . . A A . . . . . T T A . . . T . . . T . . . . A . . . . . . . . . A
blockSeqs : . A . . . . . T . . . . T . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : T** TATTCC********* TT* ** AAT******* N** CACCAC****** ** A** **** GT*** *** ** ***
originalCons : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAN--TATCATGTTA-TTCGTCCC--------GCT--T---ATTCC---GTATTTA-TTAGCTTG-TTAGC-T--TTATTCCG--TAT----AT--TAG-CTTGTTCC--CC---C-ACCAT-CCA--CCA----CACCCTACAG--GTTGTTTCAATTT--ATA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
finalCons : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAT--TATCATGTTA-TTCGTCCC--------GCTATTCC---------GTATTTA-TTAGCTTGTT-AGC-T--TTATTCCG--TAAT-------TAG-CTTGTTCC--CC---C-ACCAT-CCN--CCACACCAC------AG--GTTGTTTCAATTTA--TA-CTTCTT----TCACTTGTGNCATGT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAACTGCAATAAACATGGTGGGCACTAAAACCCGGAAAGTAATAAATAAACATTACCATGGCCATCCTCTCTTTCCACTGTTGGTCCCGCTCGAAATGACGGTGGGCTACTTGGAGGTGCGACATTTACCCTACTGTTTTCTTCACTGCCCCTTAACTTTAAATTATATCCATCCAAGAACGATTGTCCGCTGGGCTACATAATATTTCCACTATTTGCATGAGAAGGGTGCGTGTTTTTGTGTTGTTGATTTTTTTTGTTGAAAAAATGATAGTTGAAGTATTTTACTCCGGGGA
Unaligned ( gi|4 ): CGAAATACGTAGGTACCTTGTGAGGCGACATTTACTTATGTTTTATTACTGCCCACTAACTTTATATATCCATCCAAGACGTATTGCCCCTGGTACCATTACTATTCAAATCCTATTTGGCATGTGAGAAGGTGCGTGTTTTTTGTTGTTGGATTTTTTTTCTTGTAAAAATCGACAGTGAAGCTAATATTTAAACTCGGGAATATAGCACGCATTTTCAATGAGACCAAGTTGAAACTTTGCTGCTTTCTGTTCTTAAACTACAAACTGTTTTGAAACGT
Unaligned ( gi|5 ): GTTATTGCCCAGTTACCTTAATATCTCCATCCAAACGATTGACCCAGGGTAGATACGATTTCATATCTTTTTGGCCTGAGAAGTATGCGTGGTGTTGTGTTGTTCGTTTGTTTTGTTTGAAATTCGATAGTGAAGTAATAGTTAACTCTGGGGACACATAACACGTCTTTTCAATGGGTCAAAAATATGAACATTTGCTACTTTCTGTCTCTTAAACGAAAAACACTTTTTAAAACGTTTTA
Unaligned ( gi|10 ): TTACTGTCCATTCACCTGTATATTAATCCAACCAAATGATTGTCCCAGGGTAGATAGTATTTCACACCTTTCTGGCATGAGAAGGGTGCATGTTGTTTTTGGATAAGGTGCTTAAGGTTTTTTTTTCAGGTGAAAATCAATATTTTTAAACTCCTGAGACATATAGCACGCTTTTTC
Unaligned ( gi|13 ): AATGCGGTATTTGCATTAATTAATCTAGGGATTTACAAGAAATGATGGCAAAAATAGACTTACATCGTGGCGCCTATAACCTGACAAAATCCACGCTTGTCTCACCGGAAATAACAACATACAAGTAATACGCAGGCTAA
Unaligned ( gi|22 ): CCCGCAATAAACACGCTGAGCACTAAAACCCGGAAAGTAATCAATAAACATTACATGAC
Alignments
lowQualScore : 33333 1 22 1 11 1 11 22 555555555555555555555555 1 111111111 11111111111111 1111111 11 4444444444444 111111 11111 11111 111111111 11111111 33333333
lowQualScore : 33333 3 00 7 3 6 0 2 88 3 88 00 999 55 3 777777777777777777777777 4 0 555555555 55 44 99999999999999 4 8 1 66 888 5 4444444 00 2222222222222 555 22 666666 4 9999 1 1 77777 66666 5 3 3 4 555 3 999999999 33333333 3 0 3 44 3 1 555 3 3 3 55 3 7 3 77777777 1
lowQualScore : ..... . .. . . . . . .. . .. .. ... .. . ........................ . . ......... .. .. .............. . . . .. ... . ....... .. ............. ... .. ...... . .... . . ..... ..... . . . . ... . ......... ........ . . . .. . . ... . . . .. . . . ........ .
lowQualScore : 33333 3 77 3 7 7 7 0 33 3 33 77 444 44 0 777777777777777777777777 4 8 777777777 55 88 33333333333333 0 0 3 11 888 0 1111111 66 4444444444444 333 88 333333 4 4444 3 0 99999 77777 7 6 6 5 888 6 555555555 44444444 3 8 3 66 3 0 888 3 6 6 00 6 3 6 99999999 0
consensus : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAT--TATCATGTTATTC-GTCCCGC---------T------ATTCC---GTATTTA-TTAGCT---TGTTA-GCT--TT-ATTCCG------TA---A-TT-AG-CTTGTTCC--CC---C-ACCAT-CCC--CCA--CA--CC--AC-----A-G-GTTGTTTTAATTT---A--TA-CTTCTT----TCACTTGTGNCATNT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
Reference ( family-3017 ) : TGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAACGGCA--TCGC-TAT--CATGTATTT-CGGCAT--TATCATGTTATTC-GTCCCGC---------T------ATTCC---GTATTTA-TTAGCT---TGTTA-GCT--TT-ATTCCG------TA---A-TT-AG-CTTGTTCC--CC---C-ACCAT-CCN--CCA--CA--CC--AC-----A-G-GTTGTTTCAATTT---A--TA-CTTCTT----TCACTTGTGNCATGT---GAAA-G---TTTTTTGAAA-A-TNTGCAT---AT-TCCTATA---------GTAATTCAA--CGGA-ATAAACCA-AAT--TTAAAG-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTTACACTTTACCGCGGTGCNAATAACATG
gi|1 : TGTTGCATAAGGATTATGGA--GACTAATTGGTAA-AACGACAATTCGC-TATACTAGGTATTT-TGGCAGAGTATCATGTTATTTTGTAGCGC---------TGGTCGAATTCCCCAGTATTTAGTTACCT---TGTTTTGCT--TTTATGTCGGCTATTTA---AGTT-AG-CTTGTTCG--TC---C-A-CAT-C----CCA--CA--CC--CT-----A-A-GCAGTTTTTCTTTTTAA--TAGCTTCTTAAAGACACTTGTTACA--A---GACA-GT--TTTTTTGAAA-ACTCTG-ATTAAAT-TCCTGAA---------GTAACTTAA--CGGAGATAAATAACAATTCTTAAAGAAGAAGATACCGATACTTGACTATT-A--GG-AATAA-GTACTCTTA
gi|11 : CNN-NNN--NNA--CAACCC--AC-----A-AAGTTGTTTTGATTT------TA-GTTTTT----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-ACTGCAT---AT-TCTTATT---------GTAATTCAA--CAGA-ATAAACCA-AAT--TTA-------------------------A-A-A--GG-CA-AA-TAACTCTTACACTTTATCGCGGTGTGAATAacgtattataatgtgtgcgttttgcatataagttaatcacgggatttacatgagaaatgatggaaagaatagcttacatcgggaccgataacgactggacataataatccgattgtctcaagccggaaatacagacatacaaggtaatagtgcaggctaatgactgccataaactgatgaaggcactcaacccgggaagtaactagcataaacattacatggaatcctcagttaaatccactgttgacgagtagccgggtcaggaaatggagcggtgtgtgaatattggagtgagacattttacctcaatgttttcattactgcacttgacactattgatatatgcaatgcaaacgttgtgtctggtagatattctccaccctaattttggcatgagaagggtgcgtgtttttttgttgttgattttttatgtgaaaatcgatagtgaagtaatatttaactttcggggagatatagccgtagctagaccaattgttcaatgggacccgaaagtttagaactttgcgtgctttctgcattcgctccttaactacaaaactgttttttgaaacattcta
gi|12 : atcctgttattagcatcgcgatgGTTGCAT-----CT-TGGACAGAC-AAAGTGTAACAATG-CA--TCGCATAT--CATGTATT--CGGCAG--TGTCATGT-ATTT-G-CCCGC---------TT-----ATTCC---GTATTTA-TTAGCT-----TTA--CTCATT--TTCC-------T----A-TT-AG-C-TGTTCCGTCCATTC-ACC-C-CCA--CCA--CT--CCT-AC-----A-G-GT
gi|14 : GCAT--AATACCGTTATCT-GCACCGC---------TT-----ATTCC---GT------TTAGCT---TGTT
gi|14 : --TT-ATTCCG------T------TT-AG-CTTGTTCC--CC---CCATCAT-CCC--CCAT-CA--CC--ACCCTCTA-G-GTTGTTTTAATTT---AAATA-CTTCTT----TCAAATGTAATATTTTTAAAAA-G---TTTT-TGAAA-A-TTTGCAT---Accccccatcatcccccatcaccaccctctaggttgttttaatttaaatacttctttcaaatgtaatatttttaaaaagtttttgaaaatttgcata
gi|15 : gcataataccgttatctgcaccgcGGCAT--TATCATGTTATTC-GACCCGC-------------------------TATTTA-CAA------TG-TA-GCT--TT-ATTCCA------TA---T-TT-AG-CTTCTTCC--
gi|16 : cactggcatgagtaccggtcatctgggC--AC-----AAG-GTGGTTTTAATTT---C--TA-CTTTTT----TCACTTGTGCCATGT---GAAA------TTTTTGAAA-A-TATGCAT---AT-TCCTATA---------GTAATGCAA--GGGA-ATAACCCA-AAT--TTAATG-GACAAACA---ACTCCT-ACtatttagctttattccgtatttagcttgttcct
gi|17 : tT---AT-TCTTATATAGTACATTGTAATTCAA--ACGA-ATAAATCA-AAA--TCAAAG-AGAAGTTA---ACTCTT-ACTA-A-AGGGG-AA-AA-TAACTCTT--------CCGCGATGCCAATAACATG
gi|18 : gTTTTTGAAATA-T-TGTAT---ATCTCCTCTA---------GTAATT---------------CCA-ACA--TTAAAG-AGAAAGCA---ACTCTT-ACTA-ACA--GG-AA-AA-TAACTCTT----T---CCGCGATGCTAATAACATGattgtg
gi|19 : ttacaacgA-A-TATGCAA---AT-TTTCAAA---------AAAGCTAAATACGGA-ATA-----------TTAATG-AGCAAATA---AGTTTT-ACTA-A-A--GG-AA-AAATAACTCTTACACTTTATTGCAGATCGAATAGCAa
gi|2 : atTGTTGCAT-----CT-TGGA-AGACTAAATCGTAACAGTGGCA--TTGC-TAT--CATGTATTTGCGGCAT--TATCATGTTATTT-GTCCCGC---------TTT----ATTCC---GTATTTA-TTAGCT---TGTTA-GCT--TT-ATTCTG------TATATA-TT-AG-CTTGTTCC--TC---C-ACCATGCCA--CCAACTA--CCCTAC-----A-G-ATTATTTCTTTTT---A--TA-CTTCTT----TCACTTGTAACAAA----AAAA-GGTTTTTTTTGAGA-A-TTTGCAT---AT-TCCTATA---------GTAACTTAA--CGGA-ATAAATCA-CAT--TTAAAG-AGAAGATA---ACTTTT-ACTT-A-A--GG-AATAA-TAACTCTTACATTTTATAGTGGGACGAATAACATG
gi|20 : -ATGAATCA-AAT--TTAAAA-AGAAAATA---ACTCTT-ACTA-A-A--GG-AA-CA-TAACTCTT--------CCGCAATGCTAA
gi|21 : ATCAGGTTATTC-GTCCCGC----------------A-------GGA---A-TTGACT---ATTTA-G-T--TT-ATTCCG------TA---T-AT-AG-CTattcagctaataacatgattatg
gi|23 : taGGCAT--CATCATGTTATTC-GTCCCACTATTTGGTTT------ATTCC---GTATTTA-attttg
gi|24 : agGCAA--TATCATGTTATTC-GTCCCAC---------T------ATTTC---GTg
gi|6 : TGTTATTA-GCATCGC---------A------A---------ATTTA-ATATCTACATGT-A-GCT--T--ATTCCG------TA---A-TT-TGATTTGATCC--CC---C-ACCAT-CCC--TCA--CA---------------------------TTT---G--TA-CTTCTT----TGAAATGTAACATTT---GCAA-G---TTTTTTGAAA-A-TATGCAT---AT-TCCTATATA-------GTAATTCAA--CGGA-ATAAATCA-AAT--TCAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGCTAATAACATGtta
gi|7 : ATCATGTTATTA-GCATCGC---------A------A---------ATTAA-TTA-CT---TC----GCT--T--ATTCCG------TA---A-TT-AGGTTTGATCC--CC---C-ACCAT-CAC--CCA--CA-------------A-G-GTTGTTTCAATTT---G--TA-CTTCTT----TCAAATGTAACATCT---GCAA-G---TTTTTT-AAC-A-TTTGCAT---AT-TCCTATA---------GTAAT-----------------CA-AAT--TTAAAG-AGAAAGTA---ACTCTT-ACTA-A-A--GG-AA-AA-TAACTCTT--------CCGCGATGATAATAACATGattat
gi|8 : T--TT-ACTCCG------TA---A-TTTAT-CTTGATCC--CC---C-ACCA----C--CCA--CA-------------A-A-GTTGTTTCAAATT---A--TA-CTTCTT----TCACCTGTGCCATATTC-AAAA-G------TTTGAAA-A-TTTGCAT---AT-TCCTACA---------GT-----GA--CAGA-ATAAACCA-AAG--TTAAAG-GGCAAATA---A---------A-A-A------------AACTCTCACATTTTAattat
gi|9 : atcatgttattcgctttgcagaaattgaaaattcag--TT-GTTCC------------A-TT-AT-CATCCTCC--CC---C-ACCA--CCAATCCA--CA-------------A-G-GTTGTTTTAATTT---A--TA-CTT--T----TCACTTGTGTCATGT---AAAAAG---TTTT--GAAA-A-TTTGCAT---AT-TCCCAT--------------------------GTAAACCA-AAT--TTAAAG-GGCACATA---ACTCTT-ACTA-A-A--GGAAA-AA-TAACTCTTGCACTTTATCGCGGTGCAAATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAACTGCAATAAACATGGTGGGCACTAAAACCCGGAAAGTAATAAATAAACATTACCATGGCCATCCTCTCTTTCCACTGTTGGTCCCGCTCGAAATGACGGTGGGCTACTTGGAGGTGCGACATTTACCCTACTGTTTTCTTCACTGCCCCTTAACTTTAAATTATATCCATCCAAGAACGATTGTCCGCTGGGCTACATAATATTTCCACTATTTGCATGAGAAGGGTGCGTGTTTTTGTGTTGTTGATTTTTTTTGTTGAAAAAATGATAGTTGAAGTATTTTACTCCGGGGA
Unaligned ( gi|4 ): CGAAATACGTAGGTACCTTGTGAGGCGACATTTACTTATGTTTTATTACTGCCCACTAACTTTATATATCCATCCAAGACGTATTGCCCCTGGTACCATTACTATTCAAATCCTATTTGGCATGTGAGAAGGTGCGTGTTTTTTGTTGTTGGATTTTTTTTCTTGTAAAAATCGACAGTGAAGCTAATATTTAAACTCGGGAATATAGCACGCATTTTCAATGAGACCAAGTTGAAACTTTGCTGCTTTCTGTTCTTAAACTACAAACTGTTTTGAAACGT
Unaligned ( gi|5 ): GTTATTGCCCAGTTACCTTAATATCTCCATCCAAACGATTGACCCAGGGTAGATACGATTTCATATCTTTTTGGCCTGAGAAGTATGCGTGGTGTTGTGTTGTTCGTTTGTTTTGTTTGAAATTCGATAGTGAAGTAATAGTTAACTCTGGGGACACATAACACGTCTTTTCAATGGGTCAAAAATATGAACATTTGCTACTTTCTGTCTCTTAAACGAAAAACACTTTTTAAAACGTTTTA
Unaligned ( gi|10 ): TTACTGTCCATTCACCTGTATATTAATCCAACCAAATGATTGTCCCAGGGTAGATAGTATTTCACACCTTTCTGGCATGAGAAGGGTGCATGTTGTTTTTGGATAAGGTGCTTAAGGTTTTTTTTTCAGGTGAAAATCAATATTTTTAAACTCCTGAGACATATAGCACGCTTTTTC
Unaligned ( gi|13 ): AATGCGGTATTTGCATTAATTAATCTAGGGATTTACAAGAAATGATGGCAAAAATAGACTTACATCGTGGCGCCTATAACCTGACAAAATCCACGCTTGTCTCACCGGAAATAACAACATACAAGTAATACGCAGGCTAA
Unaligned ( gi|22 ): CCCGCAATAAACACGCTGAGCACTAAAACCCGGAAAGTAATCAATAAACATTACATGAC