lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 22222222 2222 33333333333 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 555555 888888888888 1111111 111 11
lowQualScore : 6 11 6 5 5 5 11111111 5 2 66 0 3333 5 00000000000 66 66 6 4 3 5 5 5 0 5 66 6 5 5 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 555555 5 0 99 777777777777 2 3 7 6666666 888 666 77 4
lowQualScore : . .. . . . . ........ . . .. . .... . ........... .. .. . . . . . . . . .. . . . . ......................................................................................................................................................................................................................................................................................... ...... . . .. ............ . . . ....... ... ... .. .
lowQualScore : 0 00 0 0 0 0 99999999 0 8 99 4 9999 0 88888888888 99 99 5 5 6 0 0 0 4 0 99 4 0 0 4 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 5 4 22 333333333333 9 4 8 2222222 888 222 33 0
consensus : NGAAGACAGTATATATAGTTGA-AG-TATT-TTA-------CAG-TCTTCGGA--CAATGCA---CTTCC-TCTNCT---T-T-GTGA--TTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGAAA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TTAA---------AGGGAA--CAAAGAGAAAAA---AAAA--G-AAGAAATGAAGCTGACNCTTCNCATCTTAT---TCATGGCAACTATNNAAAGCGATTTTT-TGNAATTCGAT-AAATAAC---A-A-AN----TGTNTTTT--TTGCACGCAAA-CC--TTAAAAAACT-CTTGAGAAAAT---TTTG-G---A-T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACANTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--NGTTGAGAAGAAACACNACCTTTT
Reference ( gi|2 ) : TGAAAACGTTATACACAGTTGA-AG-TATT-TTA-------CAG-TCTTCAGA--CAATGCA---ATTCC-TCTACT---T-T-ATGA--TTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGAGATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TTAG---------AGAGAATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCT-GTCTTAT---TC-T--CAACTATCAAAAGCGATTCTT-TATTATCCAAT-AAATAAC---A---AC----TGTGTTTC--TTGCATGCAAA-CC--TTAAAAAATTTCTCAAGAAAAT---TTTG-G-------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : GAAGACAGTCTACCTAGT-GA-AG-TAGT-TTA-------CAG-TCCTCGGA--CAATGCA---CTTCC-TCTCCTGCATGT-GTGA--TTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--AT-----CCCA-TTG----------ACACTTAA-CAGTT-------------TTACA---GATTT-----T-------------CAATCTTA-AGG---TAA---------AAAAA----AAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCA-ATTTTAT---TCATAGCAACT-TACATAGAAATGTTT-TGATAT---AT-AAAGAAA---A---AC-------GTTTC--TATAATTCA-------TTAAACAACAGCTAGAGAGGGTCTATTTG-GGCTATT-CGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTAC-GAAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|16 : tgatccagattgacttttcatgaccatcctccaagTATATATA-TCGATAGATATT-T----------AA-TCTTC-GA--CA-TGAA---CTTCC-TCTGCT-------GCGA--TTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGA
gi|5 : aACATATAGTTGA-AG-TATT-TTA---------G-TCGTCAGA--GATTGCA---CTTCC-TCTGCA---T-T-GTGA--TTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAAAA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTtaatatggtgatgt
gi|1 : tacaaTATATAGCTGA-AG-TATT-TTAAACTGTACAT-TCATCAGA--CAATACA---CTTCC-TCTCCT---T-TGATAA--TTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGAAAT--------TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA---AA---------AGGGGA-------AGAA------------------------GCTGACAC-TTTCATCTTATCTATC-G--CAACTATCAAAGACG--TTTT-CGTAGTCTGAT-AAATAGCAGAA---AT----TGTCTTTT--TTGCATGCAAC-CCTTTTGAAAAATTATTC-CGAAAA----TTTG-GCCAATT-CAAAGCTATTTAttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|14 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagACATAGTTCA-AG-CATT-TTA-------CAG-TCTTAGGA--CAATGCA-------------CT---------GA--TCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTAGA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTTAAACGAAGGGTAGAAAATTTAAATaaagtaaaatttatacgtgtg
gi|4 : AGTTGA-AG-TATT-TTA---------G-TCTTCAGG--GAATGCA---CTTCC-TCTGCA---T-T-ATGA--TTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGAGA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA---AG---------AGGGAAAACGAAGAGGAAAA---AA
gi|15 : agacggtttacaatcatgtGTTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAA-------T-ATGAAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---AAA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------ctgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|9 : TTGA-GA-AATTGTTA-------CAG-TCTTTGGA--CAATGCA---CGTCA-TCTCCT---C-T-GTGA--TTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT-----TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT
gi|10 : catatcatcctgtctatatatcatttaacttgagactaaaggtgtttatacaatatgaggctacatgtatgagcgttcatctatctctgtataacTCTTAC---TCATGGCAACTATCTTAAGC-ATT-TT-TATAATTCAAT-AAATAAC---A---AAAAAATA-GTTTTGGTGGTACGCAAA-CC--TTAAAA---TTATTAGGCAA------TT----------CAAAACTATTTAGTATAT------TTTGTTTCTTGCTGTGTGGGAAAAT-------A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAttc
gi|5 : gcttgcatgagtacgtgagcggattgaacttctaattaggttga--CAACTATGAAAAAC---TCTTCTAAAATTCAATTAAAAAAC---AGA-AA----TGGATTTT--CTGTACGCAAA-CC--TTAAA------CTTTGGGCAAT---T------------CAACCCTATTTAGCATAC------TTTGTTTATTGATTTGTAAAA
gi|7 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgaAAT-GAATAAA---ATAGAT----GGTCTTT---TTGCACGCAAA-CC--TTCAAATTCTTCTTGAGAAAAT---TTTGTGGGCAATTCAAATTTATTTGATATATTTACGCTTTG------GCTCTATG--------AATAT--CATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGA
gi|8 : GCATGCAAAACC--TTAAAGAATT----GAGCAAA------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTGAAAAA-TAAATACCA--TTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|6 : -------CGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
gi|17 : ctagagagggtctatttgggctatt-------CAAAGCTCTTTAGTATAT------TTTGCTTCTTGCAGTGTGAAAAAA--------------TATTAATCTCGTAGAATATCTGCT-------TTTCACTG---TTTTCTCGAG-AGT--AATAGGAA-ACAtgccccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA----AAATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--tttctaattt
gi|11 : TTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 11111111 11111 111111 333333333333333333333 555555555555555555555555 22222222222222 3333 2222 1 22222 1111 11 88888888888888888888888888888888888 1111 1111 111 1111111
lowQualScore : 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 3 111111111111111111111111 1 77777777777777 3 0 1 5555 5 22 1111 11 555 1 1 77777 1111 5 22 0 1 5 11 88888888888888888888888888888888888 0 3333 0 1111 0 999 3 5 1 4444444 777 777 1
lowQualScore : . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ........................ . .............. . . . .... . .. .... .. ... . . ..... .... . .. . . . .. ................................... . .... . .... . ... . . . ....... ... ... .
lowQualScore : 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 0 333333333333333333333333 7 66666666666666 5 7 0 3333 2 00 2222 77 888 4 9 11111 0000 7 33 3 4 0 99 88888888888888888888888888888888888 8 1111 1 5555 1 222 7 3 0 4444444 888 111 0
consensus : NGAAGACGGTATATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA-A---AAA--G-AAGAAATGAAACTGACACTT-NCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAAC--A-AAA---T-GTNTTTTTTGCACGCAAA-CC--TTAAAAAA-C-TCTCGAGGNAAT---TTTG-G--G-----TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACAGTATATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CAAAGAGAAAAA-A---AAA--G-AAGAAATGAAGCTGACNCTTCNCATCTTATTCATGGCAACTATNNAAAGCGATTTTTTGNAATTCGAT-AAATAAC--A-AAN---T-GTNTTTTTTGCACGCAAA-CC--TTAAAAAA-C-TCTTGAGAAAAT---TTTG-G--A-----TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACANTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--NGTTGAGAAGAAACACNACCTTTT
gi|1 : ACAGTATATA--G-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG------------GAA----------------------GAAGCTGACACTT-TCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCAGA-AAT---T-GTCTTTTTTGCATGCAAC-CCTTTTGAAAAA-T-TATTCCGAAAA----TTTG-GCCAAT---TCAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcATCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAAC--A-AAAAAATAGTTTTGGTGGTACGCAAA-CC--TTAAAA---T-TATT-AGGCAAT---T--------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : ttaACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA-A---Aaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : TATATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : aCAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTTATACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA-A---AAATTGTAGGTAATAAAACTGACACT--CTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC----AAC---T-GTGTTTCTTGCATGCAAA-CC--TTAAAAAATT-TCTCAAGAAAAT---TTTG-G---------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGTCTACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTTA--AGG-TA---AA----A-----AA--AAAAGAGAAAAA-ACGAAAA--G-AAGAAATGAAACTGACTCTTCA-ATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGAA-----AAA---C-GTTTCTAT-------AAT-TCA-TTAAACAA-CAGCTAGAGAGGGTCTATTTG-G--GCTAT-TCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA-A---A
gi|4 : agacggtttacaatcCATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAAC--AGAAA---T-AGAATTTCTATACGCAAA-CC--TTAAAAAA-C----CGGGGCAAT-----------------TCAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatccACATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACTA---AGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAAC--AGAAA---T-GGATTTTCTGTACGCAAA-CC--TTAAA-------CTTTGGGCAAT-----------------TCAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-G--GCTAT-TCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAT-GAATAAA--ATAGA---T-GGTCTTTTTGCACGCAAA-CC--TTCAAATT-CTTCTTGAGAAAAT---TTTGTG--GGCAATTCAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : aGCATGCAAAACC--TTAAAGAA-----TTGAGCAAA--------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTGAAAA-ATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : TGTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 555 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 1111111111111111111111111111111111 3333 0 4 555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . ... . . .... . . . . . . ... . .. . . . . .... .................................. .... . . ... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 333 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 4444444444444444444444444444444444 1111 1 7 222 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG--A--TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTNCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG-----TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA--AAAT---TT---GGCCAATTCAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : aCAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G-------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-GGCTAT-TCGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT---------------TCAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT---------------TCAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-GGCTAT-TCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTGGGCAATTCAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-----TTGAGCAAA------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTG-AAAAATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 4444444444444444444444444444444444444444 3333 0 5555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... ........................................ .... . .... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 5555555555555555555555555555555555555555 1111 1 4444 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G-------T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G--A----T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA---AAA---TTTG-GCCA--AT---T-CAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T-----------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : a-CAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G------------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-G--GCTAT---T-CGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT-------------------T-CAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT-------------------T-CAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-G--GCTA----TTCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTG--G--GCAATT-CAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-T-T---GAGCAAA-----------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTGAAAA-ATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 1111111111111111111111111111111111 3333 0 4 555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... .................................. .... . . ... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 4444444444444444444444444444444444 1111 1 7 222 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG--A--TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG-----TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA--AAAT---TT---GGCCAATTCAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : aCAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G-------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-GGCTAT-TCGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT---------------TCAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT---------------TCAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-GGCTAT-TCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTGGGCAATTCAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-----TTGAGCAAA------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTG-AAAAATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 4444444444444444444444444444444444444444 3333 0 5555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... ........................................ .... . .... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 5555555555555555555555555555555555555555 1111 1 4444 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G-------T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G--A----T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA---AAA---TTTG-GCCA--AT---T-CAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T-----------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : a-CAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G------------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-G--GCTAT---T-CGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT-------------------T-CAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT-------------------T-CAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-G--GCTA----TTCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTG--G--GCAATT-CAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-T-T---GAGCAAA-----------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTGAAAA-ATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 1111111111111111111111111111111111 3333 0 4 555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... .................................. .... . . ... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 4444444444444444444444444444444444 1111 1 7 222 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG--A--TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG-----TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA--AAAT---TT---GGCCAATTCAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : aCAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G-------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-GGCTAT-TCGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT---------------TCAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT---------------TCAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-GGCTAT-TCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTGGGCAATTCAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-----TTGAGCAAA------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTG-AAAAATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 4444444444444444444444444444444444444444 3333 0 5555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... ........................................ .... . .... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 5555555555555555555555555555555555555555 1111 1 4444 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G-------T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G--A----T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA---AAA---TTTG-GCCA--AT---T-CAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T-----------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : a-CAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G------------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-G--GCTAT---T-CGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT-------------------T-CAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT-------------------T-CAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-G--GCTA----TTCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTG--G--GCAATT-CAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-T-T---GAGCAAA-----------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTGAAAA-ATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 1111111111111111111111111111111111 3333 0 4 555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... .................................. .... . . ... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 4444444444444444444444444444444444 1111 1 7 222 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG--A--TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-GG-----TCAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA--AAAT---TT---GGCCAATTCAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : aCAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G-------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-GGCTAT-TCGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT---------------TCAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT---------------TCAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-GGCTAT-TCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTGGGCAATTCAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-----TTGAGCAAA------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTG-AAAAATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 333333333333333333333 44444444444444444444444 2222222222222 2222 1 1 111 9999999999999999999999999999999999999999 1111 111 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 999999999999999999999 0 88888888888888888888888 2 1 7777777777777 3 7 44 5 1 1111 1 4 1 1 0 7 777 5 22 0 1 5 5 8888 4444444444444444444444444444444444444444 3333 0 5555 0 999 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . ..................... . ....................... . . ............. . . .. . . .... . . . . . . ... . .. . . . . .... ........................................ .... . .... . ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 000000000000000000000 1 88888888888888888888888 5 8 6666666666666 5 3 33 2 0 2222 0 2 4 9 1 1 999 7 33 3 4 0 0 9999 5555555555555555555555555555555555555555 1111 1 4444 1 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G-------T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G--A----T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-T-----TAA-----------CAATTTTACACGA------AA----AGGG-------GAA--------------------------GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGACG--TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTTTGCATGCAAC-CC-TTTTGAAAAATTA-T-TC-CGA---AAA---TTTG-GCCA--AT---T-CAAAGCTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGCA--TTTTTATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGTGGTACGCAAA-CC-TT---AAAA-----T-TATT-AGGCAAT---T-----------------CAAAACTATTTAGTATATTT------TGTTTCTTGCTGTGTGGGAAA------AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGACTT--------------------AATTTTACTAGAGTT---A-----------AA--CGAAGGGTAGAA---AAaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGACTT-----AAA-----------tttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GAT
gi|17 : a-CAAAGCTCTTTAGTATATTT------TGCTTCTTGCAGTGTGAAAAAAT--AT-T-A-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGTGAAGAAAGAAA-A--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTT-----TAA-----------CAATCGTACAAGA-TT---AG----AGAG--AATTCAAATAGAAAAA---AAAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCTTGCATGCAAA-CC-TT---AAAAA--ATT-TCTCAAGAAAAT---TTTG-G------------CAAAGCTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GATTT-----T-------------CAATCTT--AAGG-TA---AA----A-----AA--AAAAGAGAAAAAACGAAAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACT-TACATAGAAATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTAT-------AAT-TCATT---AAACA--A-CAGCTAGAGAGGGTCTATTTG-G--GCTAT---T-CGAAGCTA-TTGGTATATTTACATTTTGATTCTTTCTGTACG-AAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGACTTGACGATAATGCAAGTTTTTCAATCTTAAAAAA------AG----AGGGAAAA--CGAAGAGGAAAA---AA
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTCTATACGCAAA-CC-TT---AAAAA--A-C----CGGGGCAAT-------------------T-CAGCCCTATTTAG----CCTAC--TTCGTTTCTAGATGTGTAAAAActgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-T-----TGA-----------CAATCATGCAAGT-TTTTCAATCTTAAGA--AA--AGGAGGGAAAACT--AAGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTCTGTACGCAAA-CC-TT------AA--A-C-TTT--GGGCAAT-------------------T-CAACCCTATTTAGCAT------ACTTTGTTTATTGATTTGTAAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca---TTTG-G--GCTA----TTCGAAGCTATT-GGTATATTTACATTTTGATTCTTTCTGTACGAAAAA-TAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTTTGCACGCAAA-CC-TT---CAAAT--T-CTTCTTGAGAAAAT---TTTGTG--G--GCAATT-CAAATTTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAACC-TT---AAAGA--A-T-T---GAGCAAA-----------------------AGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGTGAAAA-ATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-G-----TAA-----------CAATTTCATAAGA-TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
blockSeqs : TTACA C C T A G C G A C GA A A GCATG . CA G T G T T A . T T A T TACATG A T A T TG G TTGACGATAATGCAAGTTTTT TTTTCAATCTTAAGAAAA G T AAAATTGTAG T T TG G C GCGA T T T T G AAA A TT G A A A AACAGCTAGAGAGGGTCTATTTGGGCTATT ATAG AAGA CAC T T A TTTAACC . CGC
blockSeqs : . . . . . . C . . . . . G A . . G T . . . . . . . G . . A . . T AC G TTAAA TTAGAGAGAATTC T A ACGAAAAGAA A . AA A C GAAA T C T T G . . TG T . . A TTCTTCTTGAGAAAATTTTGTGGGCAATT ACAT AATC A T C A . . G
blockSeqs : . . . . . . C . . . . . A T . . G A . . . . . . . G . . A . . C AC T TTTAA AGAGGGAAAAC G A TAAGAGGA A G A GCA A T . G T . . TT T . . A AATTTCTCAAGAAAATTTTGG ACAT AATA A C C A . . G
blockSeqs : . . . . . . C . . . . . C T . . G A . . . . . . . C . . A . . A AC C TTGA TAAAAAAA G G G T AC A T . A . . . GA T . . A AACTTTGGGCAATT ACGC AAT C C A T . . C
blockSeqs : . . . . . C . . . . . G T . . T A . . . . . . . G . . A . . T AC T GTAA GTTAAAC G A . G A A . . A . . . GA T . . C TTATTAGGCAATT ACAT ATA C C A C . . C
blockSeqs : . . . . . . . . . . . G C . . G A . . . . . . . G . . A . . A T T TTT . T . . . GT . . . A AACCGGGGCAATT AC ATG . A A C . . C
blockSeqs : . . . . . . . . . . . C . . . A A . . . . . . . . . . . . . . A . TT . . . AATTGAGCAAA AC ATA . . C T . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqCons : C******* ** TTAA***************** TTGAGAAAN************** GCA* *** A*** AATTTTGGGCAATT************************** ACAT ATA* ***
originalCons : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTT-----TAA-----------CAATCTTACAAGA-TT---AA----AGGG--AA--CGAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCGATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TT---AAAAA--A-C-TCTCGAGGNAAT---TTTG-G--G-------T-CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
finalCons : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTAC-------AG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGACTTAA-----------------CAATCTTACAAGATTGAGAAAN--------------GAAGAGAAAAA---AAAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGCA-TTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTTTGCACGCAAA-CC-TTA---AAAAATTTTGGGCAATT--------------------------CAAAGCTATTTAGTATATTTACATTTTGTTTCTTGCTGTGTGAAAAATA-AATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT
Alignments
lowQualScore : 22222 11111111 11111 111111 77777777777777777777777777777 111 11 111 1111 1 1 111 11 4444444444444444444444444444444444444444 11 222 1111111
lowQualScore : 00000 5 4 4 4 4 88888888 4 4 4 66 4 2 55555 4 66 0 2 2 4 4 4 4 66 4 4 8 0 4 222222 1 0 4 4 2 11 5 5 7 22 99999999999999999999999999999 1 888 6 11 8 000 7 44 5 3333 4 1 4 1 1 0 7 777 5 22 0 77 5 66 33 1111111111111111111111111111111111111111 66 8888 4 66666666 0 4 00 444 3 5 1 4444444 777 888
lowQualScore : ..... . . . . . ........ . . . .. . . ..... . .. . . . . . . . .. . . . . . ...... . . . . . .. . . . .. ............................. . ... . .. . ... . .. . .... . . . . . . . ... . .. . .. . .. .. ........................................ .. .... . ........ . . .. ... . . . ....... ... ...
lowQualScore : 00000 0 4 4 4 4 33333333 4 4 4 11 4 6 99999 4 11 9 9 2 4 4 4 4 11 4 4 4 1 4 888888 8 1 4 4 8 88 0 0 0 33 99999999999999999999999999999 8 333 7 00 0 333 3 33 2 0000 2 0 2 4 9 1 1 999 7 33 3 99 0 99 88 8888888888888888888888888888888888888888 11 5555 0 44444444 1 0 22 222 7 7 0 4444444 888 666
consensus : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGAC-TTAACAATCTTACAAG------A---TT---AA---GAAA---AAAAGAGAAAAA---A-AAA--G-AGGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAAC-ATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTT--TGCACGCAAA-C--C--TT-------------AAAAA--AT-----------T-TT---G--GGCAATT----CAAAG-CTATTTAGTATATTTACATTTTGTTTCTTGCTGTGT-GAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
Reference ( family-301 ) : NGAAGACGGT-----AT-ATATAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-GGAC-AATGCACT--TC-CTCTNCT---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAGGGA-AA------TAATTTGCTG-GT-GATCTANTTTACGTACGAC-TTAACAATCTTACAAG------A---TT---GA---GAAA---NGAAGAGAAAAA---A-AAA--G-AAGAAATGAAACTGACACTTCCGTCTTATTCATGGCAACTATCAAAAGC-ATTTTTTANAATTCAAT-AAATAACA-AAA---T-GTNTTTTT--TGCACGCAAA-C--C--TT-------------AAAAA--AT-----------T-TT---G--GGCAATT----CAAAG-CTATTTAGTATATTTACATTTTGTTTCTTGCTGTGT-GAAAAATAAATAT-A-ATTTTATCAAACACACTGANCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAGAAGAAACACTGCCTTTT
gi|1 : T-ATATAG-CTGA-AG-TATT-TTAAACTGTACAT-TCATC-AGAC-AATACACT--TC-CTCTCCT---T-TGATAATTGGTAGAAAATGA--ATGATGTTAAAAATCGAAT-TTGTTT-C-ATTG-GTTGAAATATTCTG-TGCA-TTGCAA-GGA-AA------T--TTTGCTG-GT-GATCTAATTTACGTACAAC-TTAACAATTTTACACG------------------------------------------A-AAA--G-GGGAA--GAAGCTGACACTTTCATCTTATCTATCGCAACTATCAAAGAC-G-TTTTCGTAGTCTGAT-AAATAGCA-GAAAT-T-GTCTTTTT--TGCATGCAAC-C--CTTTT-------------GAAAA--ATTATTCCGAAAAT-TT---G--GCCAATT----CAAAG-CTATTTA
gi|10 : atacgaatccatgcacatatttcacttgtctgtatgttgggattactatatcgtttcaataacagcatgtcacttcgcttgatcaagagacttcaaatgtctcggtgaccagtcaatttgataaaatggcatagcatggtcatataaaatcacttatattgaaaccacgctcgatcattcaaggtgacgcgctgaacattattggaacaatcatgcacagTCTTACTCATGGCAACTATCTTAAGC-ATTTTT-ATAATTCAAT-AAATAACA-AAAAAATAGTTTTGGT--GGTACGCAAA-C--C--TT-------------AAAA----T-----------TATT---A--GGCAATT----CAAAA-CTATTTAGTAT------ATTTTGTTTCTTGCTGTGT-GGGAAA-----AT-A-ATTTCATTAAAGACACTGATCATGTACT-------TTTTGTTCTTTTTTTTTTTA--GGTTGATTAGAAAaaagtaaaatttatacgtgtg
gi|11 : gcttgcatgagtacgtgagcggattgaacttctaattaggttgaTTATTAAACACATTGAACATCTCCT-------TTCCATAG---TTGTCTTGA--GTTTGAGAGGAAACAATGCTTTCT
gi|14 : tta-ACATAG-TTCA-AG-CATT-TTA-------CAG-TCTTA-GGAC-AATGCACT---------------------GATCGGTAGAAAATGC--ATGATATGAAAATTCTTGT-TTATTT-C-ATTG-GTTGAA--ATTCTG-TTCA-ACGCAAAGTA-GA------TAATTTGCTG-GT-AATCTGTTTT-TGGACGAC-TT---AATTTTACTAG------AG--TT---------AAA---CGAAGGGTAGAA---A-Aaattttaatacacataccacgcctaattcaaggtcatactcagtacttaaaaaaaagtaataatatatatactgtagtttgtagcagatgctttaaaaaagttaatcttttcaaatagccattagcaaaaatgtgacatttgaaga
gi|15 : G-TTCA-AG-CATT-TTA-------CAGGTCTTCAGGACCAATGCACTGATCACGTCAAT---A-TG-AAATTGTTAGAAA-TGCCAATGATATGATAATTCTTGT-TTATTT-CTATTGAGTTGAA--ATTCTGTTTCATACGCAA---A-AA------TAATTTGCTGTGTAAATCTGTTTTTGGGACGAC-TTAAtttaaat
gi|16 : T-----AT-ATATA--TCGATAGATATT-T----------AA-TCTTC-G-AC-A-TGAACT--TC-CTCTGCT------G-CGATTGG---AAAA--C--ATCATGT-AAAATTTTAATGTTGTTTTC-AT-G-GTTGAA---TTTTG-TTCA-ACATAAGGGATAA------TA------TG-GT-GATa
gi|17 : a----CAAAG-CTCTTTAGTATATTT------TGCTTCTTGCAGTGT-GAAAAA---ATATTA-ATCT-------CGTA--GAATATCTGCT-------TTTCACTG---TTTTCTCGA--GAGTAATAGGAAACAgt
gi|19 : TGTTTCTTGTTGTGT-GAAGAAAGAAAA--A-ATCTTA---AACACACTGAATATCTACT-------TTTCATTC---TTTTCTTAA--atttctaattt
gi|2 : GAAAACGTT-----AT-ACACAG-TTGA-AG-TATT-TTA-------CAG-TCTTC-AGAC-AATGCAAT--TC-CTCTACT---T-TA-TGATTGGTAGAAAATGC--ATGATATGAAAATTCTAAT-TTATTT-C-ATTG-GTTGAA--ATTTTG-CTCA-ATGCAAGGGA-GATACATGTAATTTGTTG-GT-GATCTACGTTACGTATGACTTTAACAATCGTACAAG------A---TTA--GA---GAGAATTCAAATAGAAAAA---A-AAATTGTAGGTAATAAAACTGACAC-TCTGTCTTATTC-T--CAACTATCAAAAGCGATTCTTTATTATCCAAT-AAATAAC--AAC---T-GTGTTTCT--TGCATGCAAA-C--C--TT-------------AAAAA--AT-----------T-TCTCAA--GAAAATTTTGGCAAAG-CTATTTAGTATATCTATAGTTTGTTTCTTGCTGTATAAAAAAATCAATATCACATTTTATTAAACACACTGATCATCTGCT-------TTTCACTC---TTTTCTTGA--CGTTGAACAGAAACACAACCTTTT
gi|3 : tGAAGACAGT-----CT-ACCTAG-T-GA-AG-TAGT-TTA-------CAG-TCCTC-GGAC-AATGCACT--TC-CTCTCCTGCATGTG-TGATTGGTAGGAAATGC--AGGATGCGAAAATTCTAAT-TTATTT-C-GTTT-GTTGAA--ATCCCA-TT-G-ACAC-------------------TTAACA-GT--------TTTACA---GAT-TT-TCAATCTTA-AGG-----------T---AA---AAAA---AAAAGAGAAAAAACGA-AAA--G-AAGAAATGAAACTGACTCTTCAATTTTATTCATAGCAACTTACATAGAA-ATGTTTTGATAT---AT-AAAGA--A-AAA---C-GTTTCTATAATTCAT-TAAA-CAACAGCT-------------AGAGAGGGTCTA--------T-TT---G--GGCTATT----CGAAG-CTA-TTGGTATATTTACATTTTGATTCTTTCTGTAC-GAAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACA
gi|4 : tgatccagattgacttttcatgaccatcctccaagAGACGGTTTACAATCATGTAG-TTGA-AG-TATT-TTA---------G-TCTTC-AGGG-AATGCACT--TC-CTCTGCA---T-TA-TGATTGATAAAAAATGC--ATGATGTTAGACTTTGAAT-TTATTT-C-ATTA-CTTGAA--ATTCTG-CTCG-ACGCAACGGA-GA------TAATTTGATG-AT-GTGCTAATCTACGCACGAC-TTGACGATAATGCAAG------T---TTTTCAATCTTAAA---AAAAGAGGGAAA---ACGAA--G-AGGAAA--AAACTG
gi|4 : CATGACACCTATTAAAA---ATCTTCCAAAATTCAATTAAAAAACAGAAA---T-AGAATTTC--TATACGCAAA-C--C--TT-------------AAAAA--A------------C-CG---G--GGCAATT----CAGCC-CTATTTAG----CCTAC--TTCGTTTCTAGATGTGT-AAAAAcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcccatgacacctattaaaaatcttccaaaattcaattaaaaaacagaaatagaatttctatacgcaaaccttaaaaaaccggggcaattcagccctatttagcctacttcgtttctagatgtgtaaaaa
gi|5 : agacggtttacaatcatgtagttgaagtattttagtcttcagggaatgcacttcctctgcattatgattgataaaaaatgcatgatgttagactttgaatttatttcattacttgaaattctgctcgacgcaacggagataatttgatgatgtgctaatctacgcacgacttgacgataatgcaagtttttcaatcttaaaaaaagagggaaaacgaagaggaaaaaactgcaatgaagtcggatctaaattagatgcttacatcagtacgcgagtggatctaccatctgattttaattagatttatcaatcc-----AC-ATATAG-TTGA-AG-TATT-TTA---------G-TCGTC-AGAG-ATTGCACT--TC-CTCTGCA---T-TG-TGATTGGTAGAAAATGC--ATGATGTGAGACTTTGAAT-TTATTT-C-ATTG-GTTGAA--ATTGTT-CTCA-ACGCAAGGAA-AA------TAATTTGCTG-GT-GTGTTATTCTACGTGCGAC-TTGACAATCATGCAAGTTTTTCAATCTT---AA---GAAA---AGGAGGGAAAACT--A-AGA--G-GAGAAA
gi|5 : tacaaCATGACAACTATGAAAAAC--TCTTCTAAAATTCAATTAAAAAACAGAAA---T-GGATTTTC--TGTACGCAAA-C--C--TT-------------AAA-----C-----------T-TT---G--GGCAATT----CAACC-CTATTTAGCAT------ACTTTGTTTATTGATTTGT-AAAAattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtcacatgacaactatgaaaaactcttctaaaattcaattaaaaaacagaaatggattttctgtacgcaaaccttaaactttgggcaattcaaccctatttagcatactttgtttattgatttgtaaaa
gi|6 : tacaaacatatagttgaagtattttagtcgtcagagattgcacttcctctgcattgtgattggtagaaaatgcatgatgtgagactttgaatttatttcattggttgaaattgttctcaacgcaaggaaaataatttgctggtgtgttattctacgtgcgacttgacaatcatgcaagtttttcaatcttaagaaaaggagggaaaactaagaggagaaaattgcaatggagtcgtatcaaaattagatgcttgcatcagtacgcgagtggatctagcatctaatttgaattagatttatcagtca-----------T-TT---G--GGCTATT----CGAAG-CTATT-GGTATATTTACATTTTGATTCTTTCTGTAC-GAAAAATAAATAT----TTGTATCAAACACAATGCCCATCAGCG-------TTTCACTC---TTTTCTTGT--CGTTGAGAAGAAACACTGCC
gi|7 : ctagagagggtctaAAT-GAATAAAATAGA---T-GGTCTTTT--TGCACGCAAA-C--C--TTCAAATTCTTCTTGAGAAA--AT-----------T-TT---GTGGGCAATT----CAAAT-TTATTTGATATATTTACGCTTTGGCTCT--------------ATGAATAT-C-ATTTTATCAAACACAAGTATCATCTGCTTTTAACCTTTCACTC---TTTTTCTGACGCGTTGAccctattatttcagtacaaatatcatgtcttcttcaaggacttaggtcatgcaagtaaaagcattgcagtagtttctagcaaatattgatttatatgagattcaccatttcagaaaagtttgatcatttgaaaaaaaaaatgctatgaatgcttaaagcatatattacatgtgcagtttactgtacatgttacttgaacaaggttagttctagagacggcaaactattaaaaaggtgactcgggacccgtattcattttgcagtga
gi|8 : GCATGCAAAAC--C--TT-------------AAAGA--AT-----------T------G--AGCAA-------AAGGGCTTTTTAGTATATTAACATTTTGTTTCTTGCTATGT-GAAAAATAAATAC-C-ATTTTATAAAACACTCTGAACATCTGCT-------TTTCACTC---TTTTCTTGA--AGTTGAGAAGAAACACTACCTTTTttgttgttcctgtacacttgaggtcatactaaaacagtattgcagtatatgaaatttactattctagaagagtttgattatgtggtcatttaaaaaatatataaatgctcatttacatcaattaactgtataaggtcgttcctaaagacggcaagctttgtgaacaagctgtacttgttatgctatttcttt
gi|9 : T-GTATAACTTGA-GA-AATTGTTA-------CAG-TCTTT-GGAC-AATGCACG--TC-ATCTCCT---C-TG-TGATTGGTAGAAAATCT--ATGAT-TAAAAAATCT-AT-TTATTT-C-ATAG-GTTGAG--ATTCCA-TACA-ATACTGGGGA-AT------TAATTCGCTG-GT-GATCTAAATGA--TACGAC-GTAACAATTTCATAAG------A---TT---ttagtgaaaatgctgcatgactacttcaaggtcagttagaaaaatcaatagaccgatattgtagtttaaagcaggagttttcaaaatgtttaccattttagaaaagtttaaaaaaaaaaaaaaaaaaccgacatcaatcttactgtatatgatacatttatataagtttactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTTTTAATCTTTTCTTGAGGAGAAATCATGCTTTCAATTTAGAATACAAATAATATGTTTACTTCAAGGCCATACAGGTCATACTAGAACTTATACAACAGTTTTTGAAACACACACACCCCAACAACAAAACTTGGTTGTGAAATTTAGCATTTTAAAAGTTTCACGTTTGATTGCATTTGAAAAAAAAAGATATAAATACCACAGGCAT
Unaligned ( gi|13 ): ATTATTAGTACAAATACTATGTTTACTTCAAGGTCATCCTAGAAAAAAAACATACATGTAATATTGTAGTTTGTAGCAGATGTTTTTAAAATTTCAACTTGGTATATAAGATCTTCCATTTCAAAGAAAATATTTGATTATGAGGTCGTTAAAATAAGAAACAAGCACATGAATGCCTAAGGCTTATCAGTTTACTGTA
Unaligned ( gi|18 ): TTTATATCAGCTACCGGTATAAAGTTGTTCAAGAAGACGACAAGCTTTGTTAAAAGCAACACTTGTAATTTTCCTTT
Unaligned ( gi|20 ): ATTGGGTATTACTTAATCTCGAAAAGAACTTTTTCATTTAAATTTCATAAAC
Unaligned ( gi|21 ): CCCATCAACTTGTAAAAACACATACCGGTACATGTACAATGAAGA
Unaligned ( gi|22 ): TGATTCGGATTTTATTTTCTTTACCGTCGTCCT