lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 333 1111 111 222 3333333333 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 33333 333 1 77777777777777777777777777777777777777777777777777777777777777 3333333 6666666666666666666666 11 222 5555 22 6666666
lowQualScore : 5 999 3 3333 5 3 6 6 222 99 9 5 777 5 77 5 2222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 3 5 1 55 0 99 3 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00000 2 444 8 6 0 2 7 77777777777777777777777777777777777777777777777777777777777777 9999999 2 1 2 2222222222222222222222 2 6 33 444 2222 11 6 6 3333333
lowQualScore : . ... . .... . . . . ... .. . . ... . .. . .......... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . . .. . .. . . ......................................................................................................... ..... . ... . . . . . .............................................................. ....... . . . ...................... . . .. ... .... .. . . .......
lowQualScore : 0 555 2 8888 0 2 7 7 777 22 6 7 333 7 99 7 2222222222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 7 0 7 77 3 33 5 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 5 888 2 0 2 0 0 55555555555555555555555555555555555555555555555555555555555555 0000000 0 2 5 0000000000000000000000 0 0 88 333 7777 00 0 0 0000000
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTG-GA-CG--GAGAT--CAAAAACATACCGCACGTCA-ATCAAA-TAA-GAGA--CA-ATAGCTCAGGCTCT-----GATTGACAGA-TTTAGCCGA--GT--G---T--C-ACTAGATATCCGAGATCGGAAATGTTTCGATAGCA--ATTA-CAACTACACG-G----TATCA-A-CCCTTTCATCTAC-GCA----AAAG-ATAATNTG-CGG----TACGTTTTTTTTTTTAAA---TTTTGAAGTCGA-TAATTACCTGAATTAAATATTTGAANATTAGATGCATG---A-GTCAGTCACAGCT-GTTATGTATCTT-AA-AAAAACGTCGTC-AAAA-ATC----T-T--CAAA----A-----------ACTTTT-CGAAGAGGAAATTAGCGGC-GATTCAAGC-----TT--TATTTGCNTATAACGATTGG-G--ACG-T--GGG---ATCCTGAAAAGAAAAGAAGT-T-ATN-TCCGTAG-TAACT---ACACCAGTCTCCGCATC-TAA-GT-C-TGA--CATTCTC----CCATCATCGATAGAATGCCCGGATTGTCTCCGTCAGTCATGCANTCTCGCAGAGA-----A--A-AG--CTTGG-T--NGCCCGATA-A----AACCAAAAA-CGA-----CAT-C--GC-GNAAG--AACAGCCACTTTCGNAAAA--CTTCATGTATAAAAAANTTTAACAATNCTTTGCCA-TCGAAGAGCCTGGATTGACGAACGC--------TAAGTACCTTG-----A----CAGA--AA-------AAATTGA--CATAC---GACAAA-----N-GCGATTCGTCTGGCA---GACCNACNG-CA------TAAAATGAGAAATAA--TGCC--TAACTGCGCG--ATTCATCAGATCAGGGGATGGTTGCCAAAT-TCTGATGGAC
Reference ( gi|1 ) : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTG-GA-CA--GAGAT--CAAAAACATACCGCTTGTCA-ATCAAA-T-A-GAGA--CA-ATAGCTCAGATTCT-----GATTGACAG--TGTAGCTGA--GT--G---T--CAACTGGACACTCGAGAGCGTATATGTTTTGATAGCC--ATTA-CAACCGCACGCG----CGCCA-A-ATCTTTCATCTACCGCAGCGCAGAG-ATAACGTG-CAG----TATGTTTTTTTTTTTAAA---TTATGAAGTCGA-TAATTACCTGAACTAAATATTTGAAAATTAGA-ACAT----A-GTCAGTCATAGCT-GTTTTGTAACCTGAA-GAGAATGTCCTC-AAAA-ATC----T-T--CAAA----A-----------ACTTTC-CAAAGAGGAAACTAGCGGG-GGTTCAAGC-----TT--TATTCACTTATAACGATTGG-G--AT--T--GGA---ATCCTGAAAAGAGAAGAAGT-T-GTG-TCCGTAG-CAACG---ACACCAGTTTCCGCACC-TAACAT-CCTTATCCATCCTCAGC-CCATCATCGACAGAATGCCCCGATTGCCTTTGTCAGTCATGCGTTCTTGCAGAGA-----A-GACAATCCTTGG-T--GGTCTGATATG----GACCGAAAA-CAA-----CAT-C---C-GTAAG--AACAGTCATTGTCGGAAAA--CATTACGTAAAAAAAAAATGGACAATGCTTTGCCA-T-GAGGAGCCTGGACTGACGATCGC--------T--GTACCTTGGGCGAG----CAGA--AA-------AAATGGA--CATGC---AACAAA-----A-GCGATTCATCTGGCAC--GACATACTG-AA------CAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTCGGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTG-GA-TG--GAGATAAAAAAAATATACTGCATGTCA-ATCAAA-TAA-GCGA--CA-ATAGTTCAGGCTCT-----GATTGGCAGA-TTTAGCAAA--GT--G---CAGCAAATAGATATCCAGGATCG-AAATGTTTCGATAGCA--ATTA-TAACTACACTCG----AAACA-ATGCCTTTCATCTAC-----CGTAAAG-ACAATATC-CTGGTTTTTTGCTTTTTTCTTCACA---TTTTG-AGTC
gi|10 : tAAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTT-GA-CG--GAGAT--CAAAAACATACCGCATGTCA-ATCACATT-A-GAGA--CA-ATAGCTCAG------------------G--TGTGGCCGA--GTGCG---T--CCACCAGGTATCCGAGTTCGGA-ATGTTTTGATAGCA--ATT---AACTAAATGGG----TATCACC-CCCTTTCATCTACCGCAA---AGA-----------CGG----CACGTTTTTTCTTCTTAA---TTTTG-AGTCGA-caaaaa
gi|13 : AAAGACCCAA-CTTTAAGCCAC-CC-------AATTTACCTG-GA-CG--GAGAT--CAAAAACAT--TGCTCTTCATATCAAA-C-A-GTGATGCACATAGa
gi|3 : cccaaaatatcagaaaattatagtattttcctttAAGACCCAATCTT-AAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGAT--CAAAAACATACCACATGTCA-ATCAAA-GAA-AAGA--CA-ATAGCTCAGGCTCT-----GATTGACAGA-TTCAGCCAA--GTGCG---T--CAACTAGGTGTCCGAGATAGAAAAT-------TAACCTAAGTATCAACC--------------------TCTTTCGTCTACCGCA-----------AACACA-CGG----TA-------TTTTTTAAA---TTTTGAATCTAA-TAATTACCTGAATTGAATATT--A----TAGATATA-----A-GTCAGTCAAAGCC-TTCATGT-ACTTAAA-AAAAA--------AAAA-AGG----TGT--CAAA----ATCACGTACGGTACTTTT-CAAAGA-GAAATTAGCGGC-GATTCAAGC-----T-------------TAA-------------------GG---ATCTTGAAAGGACAA-ACGTAC-ATC-CCCGTCGTTAACT---ACACCAG-CTCCGCGTCATAA----------------------CCATCATCGATAGAATGCCCGAATTGTCTCTGTTAGTCATGCAGTCTTGCAGAGA-----A-CAAGAGCATTGG-TTACGCC--AAATA----AACCCAAAA-CAG-----CAA-C---C-ggaactgtttatcaaatt
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTG-GC-CG--GTGAT--CAAAAACACATTGCATGTCA-TTCGAA-TGA-GAGA--CA-ATGGCTCAGGCTCCGATTGGATTGGTAGA-TTTAGTCGA--GT--GCGTT--C-ACCGGATATCCGAGGGCGGA-ATGTT------------------ACTACACG-G----TATCA-ACCCCTTTCATCT-------------------TTTG-CAG----TA--TCTTTTTTTTTAAC---CT-TGAGTCCAA-TAATTACATG-------TACCTG--AATTAGATACATGTCAA-GTTAATCACCTCT-GTTtg
gi|14 : CCCAAT-TTTAAGCCACCTCCCTT--AAATTTACCTG-GA-CG--GAGAT--CAAAAACATACCGCACGTCA-ATCACA-CAA-GAGA--CA-ATAGTTCAGGCTTT-----GATTGACAGA-TGTGGCCAACTGC--G---T--CCACTGGA
gi|11 : TTGTCA-ATCAAA-T-ACAAGA--CA-GCAGATCAGGCATT-----GACTGACAGACTTTA-CCAA--AT--G---C-----CT-GAT-CTC-AGA-TGTA-ATCATTTTATAGCA--ATTA-C--CTTCAAGTGTATTTACC-----CCTTTCATTCAC-----TGCAAAA-ATAAGTTGACAG----TATGCTTTTTatc
gi|16 : aTCTCATCTACAGCA----AAAGTATA--GTA-CAA----TA-GTTTTTCTTC--AAAGGTTTCT-AGGACGA-TAATTACCTGAACCAAAGATTTAAAAAT
gi|2 : AA---TTTTGA-GTCAAATAATTGCCTGAATTAAATAACTGAATATTA-A-GTAT----AAGTCAGTCACAGCT-GTTATATATCTT--A-AAAAATGTTGTC-AAA-----------T--CACAGCATA-----------ACTTTT-CGAAGA-GAAATTAGCGGC-GATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATA-T--AGG---ATCCTG-AAAGAAACGAAGT-T--CA-T--GTAG-TAACC---ACACCAA-CTCCGC-TT-TGA-ATGCCTGA---ATTGTC--T-CCGTCATC-----AGTG----AACTG----------TCGTGCATTCTCGCAGAAA--------------CTTTG-T--AGCGCGATAAGACAAGAACAAAAATTAAAATGGCAT-CTTGC-AAAAA--AACAGCCA-----GAAAAAT-CTTTATG----AAAAATTTTAATAATGCTCTGTCA-TCAAAGAGCCTGGATTGATGAACGC--------TCAGGACCTT-----------CAT---AC-------AAATTCA--CATATTAAGACAAA-----T-GCAATTCGTCTGGCA---GACCTACGG-CC------TAAAACGAGAAATAA--TGCCTATAACTGCG-ATT
gi|7 : TAAATATTTAAATTTTAGA----T----A----ACTTACAACT-GCTATGTATC----------ACGTC-----AAC-ATCAAGGT-T--CAA------------------CTTTT-CTAATAG-AAATTTGCGGC-AGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GGCAT--T--------ATCTTGAAA-GAAAAGAAGT-T-GTT-TTT-CAG-TAA----------AGTT-CTGCACC---AGGT-C--TA--CAT-----------TCATCGATATAATGTCCGGATTGTCTTTGTCAGACATGCATTCTCGCAGAGA--------------CTTCG-T--AGCCCGATA------AACCAAATA-CGA-----CAT-CCCGC-GACAG--AACAACCACTTTCctaaatcaacaagaaatg
gi|6 : TTA-A-GCATG---A-GTCAGTCACAGTTTGTTACGTATC---------AACATC-----AAA-ATT----A-TGGTACA----A-----------ACTTTT--GGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCG--ATGTTAAGGAGATAT----AAAAGA----AAGT-TCATGCTACGTA--TAATATTCA-ACCA-TCTCTGCATC-TA---------------CCTCA-----AT--TTGATAGAATGCCCAGATTGTC-TCGTCAGCCATGCAATTTCGCAGA----------------CTTGGTT--AGCCTAAT------------AAAA-CAA-----CA
gi|15 : tGAACGAGAATGACGTCTAAAATATC----T-G--CAAG------------------TCTCTCGTAGGAAAAAGTAGCGGC-GATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-G--AC--T--GGA---ATACAGAACTGGGAAGAAactcgtgatcgcgcatgcacagaacaacaaactttccagaaaaccttc
gi|4 : -CAAAGAG-AAATTAGCAGT-GATTCAAGC-----TT--TATTTCCTAATAACGATTGG-G--ACA-T--GGG---GTCCC-AAAAGAAAAGAAGT-T-----CCCATAG-TAACT---ACACCAG-CTCGGCATC-TAATG----TGATTCATTCTC--CACCATCATCGATAGAATGTCCGAATTATCTCCGTCAGCCATGCATTCTCACAGAGAACAGCA-GACAGT-CTTGG-T--TGTTTGATA------AACCAAAAA-TGA-----CAT-C---CTGCAAA--AACAGCTACTGTCACAAAA---ATCTTTTATGAAAAATTTTAACAATGCTTTGCTA-TCGAAGAGCCTGGATTGATGAACGCGAGGTACAT--GTACCTTG-----A----CAGA--AA-------ATCCAGAGCCAC------ACAAA-----ATGCAATTCATCTGGCA---GACCAACTG-CA------TAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTCATCAGATCAGGGGATGATT
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCAGTGATACAGTCTCGCAGAGA-----ACAACAG-CATTGG-TTAGCCCTG---TA----GACCAAAAA-TGG-----CATCC---C-ACAAGATAATAGCCACTTTCAGAAAAATCTTCATG---AAAAAAATTTAACAATCCTTTTCCA-TCAATGAGCCTGGATTAATGAACGC--------TAGGTACCTTGACAGAAAATCCAGATCAAGACAAACAAATTGA--CGTAC---GACAAA-----T-GTGATTCTTCTGGCA---GACCTACGG-CA------TAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTCATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|12 : TATAAAAAAGCTGAACAAATTTTTGCCACC-GAAGTTCATGGATTTACAAACGC--------TAAGTACCTTG-----A----CAGA--AA-------AAA-------ATCC---CTCAAAGCCATA-CCAATTAAT-TGACACAAGACAGA-TGCAATTCATCTAAAATGAGAAATAA--atgcatgcagtcttacatgggacgtgtgtg
Alignments
lowQualScore : 1111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 1111 11111 333333333 111 1111 111 22222222222222222 11111 7777777777777777777777777777777777 11 2222222222 666666666666666666666666666666666666666666666666666 1 111111111 22222222 1 3333333333333333333333333 222 2222222222222222222222222222222 2222222222 777777777777777777777 1111 11111 111111 11111 111 11111 33 111111 222222 22222 22222222222222222222222222222222222222222222 11 111 11 11 11 11 111 2 1
lowQualScore : 5 5 11 2222 77 1 5 1 44444 1 1 77 77 111111111 000 4 0 3333 2 222 66666666666666666 6 55555 6 0000000000000000000000000000000000 1 3 77 77 6 0 1 33 7777777777 6 666666666666666666666666666666666666666666666666666 0 3 5 444444444 999 0 1 5 77777777 0 4 0000000000000000000000000 333 3 6666666666666666666666666666666 1 5555555555 1 333333333333333333333 5 4444 0 5 8 44444 999999 66666 99 555 1 66666 99 6 1 3 99 1 00 777777 1 0 1 77 333333 00000 0 33333333333333333333333333333333333333333333 1 11 444 0 1 4 0 8 3 3 0 11 33 00 2 33 777 7 2 0 5
lowQualScore : . . .. .... .. . . . ..... . . .. .. ......... ... . . .... . ... ................. . ..... . .................................. . . .. .. . . . .. .......... . ................................................... . . . ......... ... . . . ........ . . ......................... ... . ............................... . .......... . ..................... . .... . . . ..... ...... ..... .. ... . ..... .. . . . .. . .. ...... . . . .. ...... ..... . ............................................ . .. ... . . . . . . . . .. .. .. . .. ... . . . .
lowQualScore : 7 7 11 1111 99 4 0 4 33333 4 3 99 99 999999999 000 4 1 5555 5 000 00000000000000000 7 88888 7 6666666666666666666666666666666666 7 5 99 33 7 8 8 00 4444444444 7 888888888888888888888888888888888888888888888888888 4 7 7 999999999 000 1 4 7 00000000 3 6 7777777777777777777777777 222 7 5555555555555555555555555555555 7 0000000000 0 999999999999999999999 7 6666 4 7 4 33333 222222 77777 22 888 0 77777 22 7 0 0 22 0 00 222222 0 6 0 44 000000 00000 8 22222222222222222222222222222222222222222222 0 00 000 8 0 6 8 0 8 8 6 00 88 88 5 88 555 0 0 0 5
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGA--GT--G---C-C-A-C---TGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTGAA-ATTAGATACATG---AGTCAGTCACAGCT-GTTATGTA-TCTTAAAAGAACGTCGTCAAAAATNT-T--CANA----A-----------ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TAA--T-CT-A--CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAG---AA-A-----CA-------TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----AT--C--GCGCA-----AGA--ACAGC-CACTTTC--GGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCTAGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Reference ( family-2989 ) : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGA--GT--G---T-C-A-C---TAGATATCCGAGATCGGAAATGTTTCGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TACGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAATTAAATATTTGAANATTAGATGCATG---AGTCAGTCACAGCT-GTTATGTA-TCTTAAAAAAACGTCGTCAAAAATCT-T--CAAA----A-----------ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CGT--GGGATCCTGAAAAGAAAAGAAGT-T-AT-NTCCGTAG-TAACTAC---ACCAGTCTCCGCATC-TAA-GT-CTGA--CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCANTCTCGCAGAG---AAAA----GC--------TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----AT--C--GCGNA-----AGA--ACAGC-CACTTTC--GNAAAA--CTTCATGTATAAAAAANTTTAACAATNCTTTGCCATCGAAGAGCCTGGATTGACGAACGCTAAGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAANGCGATTCGTCTGGCA-GACCNACNGCATAAAATGAGAAATAA--TGCC--TAACTGCGCG--ATTC---ATCAGATCAGGGGATGGTTGCCAAAT-TCTGATGGAC
gi|1 : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTGG----ACAGAGATCAAAAA--CATACCGCTTGTCA-ATCAAATA-GAGACAATAGCTCAGATTCT-----GATTGACAG-TGTAGCTGA--GT--G---T-C-AAC---TGGACACTCGAGAGCGTATATGTTTTGATAGCCATTACAACCGCAC-GCGCG-CCA-A-A-T-CTTTCATCTA-CCGCAGCGCAGAG-ATAACGTG-C-AG---TATGTTTTTTTTTTTAAA--TTATGAAGTCGA-TAATTACCTGAACTAAATATTTGAAAATTAGA-ACAT----AGTCAGTCATAGCT-GTTTTGTAACCTGAAGAGAATGTCCTCAAAAATCT-T--CAAA----A-----------ACTTTCCAAAGAGGAAACTAGC-GGGGGTTCAAGC-----TT--TATTCACTTATAACGATTGG-GA--T-T--GGAATCCTGAAAAGAGAAGAAGT-T-GT-GTCCGTAG-CAACGAC---ACCAGTTTCCGCACC-TAACATCCTTATCCATCCTCAGCC--CATCATCGACAGAATGCCCCGATTGCCTTTGTCA----------GTCATGCGTTCTTGCAGAG---AAGACAATCC--------TTGG-T--G-GTCTGATATGGAC-----CGAAAAC------AAC-----AT--C---CGTA-----AGA--ACAGT-CATTGTC--GGAAAA--CATTACGTAAAAAAAAAATGGACAATGCTTTGCCAT-GAGGAGCCTGGACTGACGATCGCT--GTAC------CTTGGGCGAGCAGAAA------------------AA------------------------ATGGA--CATGC---AACAAAAGCGATTCATCTGGCACGACATACTGAACAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTC---GGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|10 : AAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTTG----ACGGAGATCAAAAA--CATACCGCATGTCA-ATCACATTAGAGACAATAGCTCAGG---T-----G-----------TGGCCGA--GT--GCGTC-C-A-C---CAGGTATCCGAGTTCGG-AATGTTTTGATAGCAATT--AACTAAATGG-GTA-TCACC-C-C-CTTTCATCTACC-GC-----AAAG-A--------C-GG---CACGTTTTTTCTTCTTAA--TTTTG-AGTCGA-
gi|11 : GTCA-ATCAAATACAAGACAGCAGATCAGGCATT-----GACTGACAGACTTTACCAA--AT--G---C-----C---T-GATCTC--AGAT--GTAATCATTTTATAGCAATTAC--CTTCAA-GTGTATTTA-C-C-C-CTTTCATTCA-CTGCA----AAA--ATAAGTTGAC-AG---TATGCTTTTTa
gi|12 : attTATAAAAAAGCTGAACAAATTTTTGCCACCGAAGTTCATGGATTTACAAACGCTAAGTAC------CTTG-----ACAGAAA------------------AAAATCCCTCAAAGCCATACCAATTAATTGA--CACAA---GACAGATGCAATTCATC-----------------TAAAATGAGAAATAA--
gi|13 : atcttAAAGACCCAAC-TTTAAGCCAC-CC-------AATTTACCTGG----ACGGAGATCAAAAA--CAT--TGCTCTTCATATCAAACAc
gi|14 : cccaaaatatcagaaaattatagtattttcctttCCCAAT-TTTAAGCCAC-CTCCCTTAAA-TTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCACACAAGAGACAATAGTTCAGGCTTT-----GATTGACAGATGTGGCCAACTGC--G---TCC-A-C---TGGA-ATCgtgatgcacatagggaactgtttatcaaatt
gi|15 : AGAATGACGTCTAAAATAT-C--TGCA----A-----------GTCTCTCGTAGGAAAAAGTAGC-GGCGATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-GA--C-T--GGAATACAGAACTGGGAAGAA
gi|16 : gaacgTCTCATCTA-CAGCA----AAAGTATAGTA---C-AA---TA-GTTTTTCTTC--AAAGGTTTCTAGGACGA-TAATTACCTGAACCAAAGATTTAAAAAT
gi|2 : AA--TTTTGA-GTCAAATAATTGCCTGAATTAAATAACTGAATATTAA--GTATA---AGTCAGTCACAGCT-GTTATATA-TCTTAAAAAA-TGTTGTCAAA------T--CACAGCATA-----------ACTTTTCGAAGAG-AAATTAGC-GGCGATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATAT--AGGATCCTGAAA-GAAACGAAGT-TCAT-----GTAG-TA--------ACCA-------CACC--AA-CT-CCG-------CT----------------TTGAATGCCTGAATTGTCTCCGTCATCAGTGAACTGTCGTGCATTCTCGCAGAA---A--------C--------TTTG-T--A-GCGCGATA-AGACAAGAACAAAAATTAAAATGGC-----AT--CTTGCAAA-----AAA--ACAGC-CA-------GAAAAAT-CTTTATG----AAAAATTTTAATAATGCTCTGTCATCAAAGAGCCTGGATTGATGAACGCTCAGGAC------CTTC-----AT---AC------------------AA------------------------ATTCA--CATATTAAGACAAATGCAATTCGTCTGGCA-GACCTACGGCCTAAAACGAGAAATAA--TGCCTATAACT--GCG--ATTCTAAATCAA--CAAGAAATG
gi|3 : AAGACCCAAT-CTTAAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGATCAAAAA--CATACCACATGTCA-ATCAAAGAAAAGACAATAGCTCAGGCTCT-----GATTGACAGATTCAGCCAA--GTGCG---T-CAA-C---TAGGTGTCCGAGATAGAAAAT-------TAAC--------CTA----A-GTA-TCA-A-C-CTCTTTCGTCTACC-GCA-----------AACACA-C-GG---TA-------TTTTTTAAA--TTTTGAATCTAA-TAATTACCTGAATTGAATATT--A----TAGAT--ATA---AGTCAGTCAAAGCC-TTCATGTA--CTTAAAAAAA------AAAAAAGGTGT--CAAA----ATCACGTACGGTACTTTTCAAAGA-GAAATTAGC-GGCGATTCAAGC-----T-------------TAA------------------GGATCTTGAAAGGACAA-ACGTAC-AT-CCCCGTCGTTAACTAC---ACCAG-CTCCGCGTCATAA--------------------C--CATCATCGATAGAATGCCCGAATTGTCTCTGTTA----------GTCATGCAGTCTTGCAGAGAACAAGA----GCA-------TTGG-TTAC-GCCAAATA-AACC-----CAAAA
gi|4 : CAAAGAG-AAATTAGC-AGTGATTCAAGC-----TT--TATTTCCTAATAACGATTGG-GA--CAT--GGGGTCCC-AAAAGAAAAGAAGT-T-----CCCATAG-TAACTAC---ACCAG-CTCGGCATC-TAA--T-GTGATTCATTCT---CCACCATCATCGATAGAATGTCCGAATTATCTCCGTCA----------GCCATGCATTCTCACAGAG---AACA----GCAGACAGTCTTGG-T--T-GTTTGATA-AA-C-----CAAAAAT------GAC-----AT--C--CTGCA-----AAA--ACAGC-TACTGTC--ACAAAAATCTTT---TATGAAAAATTTTAACAATGCTTTGCTATCGAAGAGCCTGGATTGATGAACGCGAGGTACATGTACCTTG-----ACAGAAA------------------AT------------------------CCAGAGCCACAC---A--AAATGCAATTCATCTGGCA-GACCAACTGCATAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTC---ATCAGATCAGGGGATGATTcagcaacctg
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCA----------GTGATACAGTCTCGCAGAG---AACA----ACAGCA----TTGG-T--TAGCCCTGTA-GA-C-----CAAAAAT------GGC-----AT--C--CCACA-----AGATAATAGC-CACTTTC--AGAAAAATCTTCATG---AAAAAAATTTAACAATCCTTTTCCATCAATGAGCCTGGATTAATGAACGCTAGGTAC------CTTG-----ACAGAAAATCCAGATCAAGACAAACAA------------------------ATTGA--CGTAC---GACAAATGTGATTCTTCTGGCA-GACCTACGGCATAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTC---ATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|6 : GCATG---AGTCAGTCACAGTTTGTTACGTA-TC-------AACATC----AAAATTA-TGGTACA----A-----------ACTTTT-GGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCGA--TGTTAAGGA----GATATAAAAGAAAGT-TCATGCTACGTA--TAA-TATTCAACCA-TCTCTGCATC-TA---------------CC---TC--AAT--TTGATAGAATGCCCAGATTGTCT-CGTCA----------GCCATGCAATTTCGCAGA-------------C--------TTGGTT--A-GCCTAATA-AAAC---------AAC------AACTCGTGAT--C--GCGCATGCACAGA--ACAACAAACTTTCCAGAAAAC--CTTCatgcatgcagtcttacatgggacgtgtgtg
gi|7 : tttaaTAAATATTTAAATTTTAGATA-----------ACTTACAACT-GCTATGTA-TC--------ACGTCAACATCAAGGT-T--CAA------------------CTTTTCTAATAG-AAATTTGC-GGCAGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GG--CAT--T--ATCTTGAAA-GAAAAGAAGT-T-GT-TTTT-CAG-TAA----------AGT-TCTGCACC--AG-GT-CT-A--CATTC------------ATCGATATAATGTCCGGATTGTCTTTGTCA----------GACATGCATTCTCGCAGAG---A--------C--------TTCG-T--A-GCCCGAT--AAAC-----CAAATAC------GAC-----ATCCC--GCGAC-----AGA--ACAAC-CACTTTC--
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTGG----CCGGTGATCAAAAA--CACATTGCATGTCA-TTCGAATGAGAGACAATGGCTCAGGCTCCGATTGGATTGGTAGATTTAGTCGA--GT--GCGTT-C-A-C---CGGATATCCGAGGGCGG-AATGTT---------------ACTACAC-G-GTA-TCA-ACC-C-CTTTCATCT--------------------TTTG-C-AG---TA--TCTTTTTTTTT-AA--CCTTGAGTCCAA-TAATTACATG-------TACCTGA--ATTAGATACATGTCAAGTTAATCACCTCT-GTT
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTGG----ATGGAGATAAAAAAAATATACTGCATGTCA-ATCAAATAAGCGACAATAGTTCAGGCTCT-----GATTGGCAGATTTAGCAAA--GT--G---C-A-G-CAAATAGATATCCAGGATC-GAAATGTTTCGATAGCAATTATAACTACACTC-GAA-ACA-A-TGC-CTTTCATCTA-C--CGT---AAAG-ACAATATC-CTGGTTTTTTGCTTTTTTCTTCACA--TTTTG-AGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1111 11111 33333333333 111 1111 22222222222222222 11111 666666666666666666666666 111 11 11111 11 222222222 444444444444 33333333333333333 1 111111111 22222222 1 222222222 33333333333333 99999999999999999999999999999999 2222222222 777777777777777777777 1111 11111 111111 11111 1 22222 333333 222222 22222 22222222222222222222222222222222222222222222 11 111 11 11 11 111 1 1
lowQualScore : 5 5 11 2222 77 1 5 1 44444 1 1 88888888888 000 3 3333 2 777 66666666666666666 6 55555 6 777777777777777777777777 5 000 7 11 77 77 6 0 1 66666 11 555555555 6 8 3 999999999999 2 5 11111111111111111 0 3 5 444444444 999 0 1 5 22222222 0 2 999999999 1 6 55555555555555 3 22222222222222222222222222222222 1 5555555555 1 333333333333333333333 5 4444 0 5 8 44444 999999 66666 5 55555 99999 6 1 3 6 888888 1 0 88 0 333333 00000 0 33333333333333333333333333333333333333333333 1 11 444 0 0 8 1 3 0 11 33 3 2 33 777 7 5 5
lowQualScore : . . .. .... .. . . . ..... . . ........... ... . .... . ... ................. . ..... . ........................ . ... . .. .. .. . . . ..... .. ......... . . . ............ . . ................. . . . ......... ... . . . ........ . . ......... . . .............. . ................................ . .......... . ..................... . .... . . . ..... ...... ..... . ..... ..... . . . . ...... . . .. . ...... ..... . ............................................ . .. ... . . . . . . .. .. . . .. ... . . .
lowQualScore : 7 7 11 1111 99 4 0 4 33333 4 3 99999999999 000 6 5555 5 222 00000000000000000 7 88888 7 333333333333333333333333 7 000 1 33 99 33 7 8 4 88888 00 999999999 7 0 8 111111111111 2 2 55555555555555555 4 7 7 999999999 000 1 4 7 99999999 3 1 777777777 0 7 22222222222222 7 55555555555555555555555555555555 7 0000000000 6 666666666666666666666 7 6666 4 7 4 33333 222222 77777 0 88888 33333 7 0 0 4 888888 0 6 88 8 000000 00000 8 22222222222222222222222222222222222222222222 0 00 000 8 8 0 0 8 6 00 88 2 5 88 555 0 0 5
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCGTCAAAA--ATNTT--CACA----AACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Reference ( family-2989 ) : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---TGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCGTCAAAA--ATNTT--CANA----AACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCGCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
gi|1 : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTGG----ACAGAGATCAAAAA--CATACCGCTTGTCA-ATCAAATA-GAGACAATAGCTCAGATTCT-----GATTGACAG-TGTAGCTGAGTG---T---C-AAC---TGGACACTCGAGAGCGTATATGTTTTGATAGCCATTACAACCGCAC-GCGCG-CCA-A-A-T-CTTTCATCTA-CCGCAGCGCAGAG-ATAACGTG-C-AG---TATGTTTTTTTTTTTAAA--TTATGAAGTCGA-TAATTACCTGAACTAAATATTTGAAA-ATT--AGA-ACAT----AGTCAGTCATAGCT-GTTTTGTAACCTG-----AAGAGAATGTCCTCAAAA--ATCTT--CAAA----AACTTTCCAAAGAGGAAACTAGC-GGGGGTTCAAGC-----TT--TATTCACTTATAACGATTGG-GA--T-T--GGAATCCTGAAAAGAGAAGAAGT-T-GT-GTCCGTAG-CAACGAC---ACCAGTTTCCGCACC-TAACATCCTTATC-CATCCTCAGCC--CATCATCGACAGAATGCCCCGATTGCCTTTGTCA----------GTCATGCGTTCTTGCAGAGA-----AG-----ACAATCCTTGG-T--G-GTCTGATATGGAC-----CGAAAAC------AAC-----ATC-CGTA-----AGA--A--CAGT-CATTGTCGGAAAA--CATTACGTAAAAAAAAAATGGACAATGCTTTGCCAT-GAGGAGCCTGGACTGACGATCGCT---GTAC------CTTGGGCGAGCAGAAA------------------AA------------------------ATGGA--CATGC---AACAAAAGCGATTCATCTGGCACGACATACTGAACAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTC---GGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|10 : AAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTTG----ACGGAGATCAAAAA--CATACCGCATGTCA-ATCACATTAGAGACAATAGCTCAGG---T-----G-----------TGGCCGAGTGCGTC---C-A-C---CAGGTATCCGAGTTCGG-AATGTTTTGATAGCAATT--AACTAAATGG-GTA-TCACC-C-C-CTTTCATCTACC-GC-----AAAG-A--------C-GG---CACGTTTTTTCTTCTTAA--TTTTG-AGTCGA-
gi|11 : GTCA-ATCAAATACAAGACAGCAGATCAGGCATT-----GACTGACAGACTTTACCAAATG---C-------C---TG---ATCTCAGAT--GTAATCATTTTATAGCAATTAC--CTTCAA-GTGTATTTA-C-C-C-CTTTCATTCA-CTGCA----AAA--ATAAGTTGAC-AG---TATGCTTTTTa
gi|12 : attATCTTTA----TAAAAAAGCTGAACAAATTTTTGCCACCGAAGTTCATGGATTTACAAACGCT-AAGTAC------CTTG-----ACAGAAA------------------AAAATCCCTCAAAGCCATACCAATTAATTGA--CACAA---GACAGATGCAATTCATC-----------------TAAAATGAGAAATAA--
gi|13 : AAAGACCCAAC-TTTAAGCCAC-CC-------AATTTACCTGG----ACGGAGATCAAAAA--CAT--TGCTCTTCATATCAAACAc
gi|14 : cccaaaatatcagaaaattatagtattttcctttCCCAAT-TTTAAGCCAC-CTCCCTTAAA-TTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCACACAAGAGACAATAGTTCAGGCTTT-----GATTGACAGATGTGGCCAACTGCGTC---C-A-C---TGGA-ATCgtgatgcacatagggaactgtttatcaaatt
gi|15 : AGAATGACGTCTAAA--ATATC--TGCA----AGTCTCTCGTAGGAAAAAGTAGC-GGCGATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-GA--C-T--GGAATACAGAACTGGGAAGAA
gi|16 : gaacgTCTCATCTA-CAGCA----AAAGTATAGTA---C-AA---TA-GTTTTTCTTC--AAAGGTTTCTAGGACGA-TAATTACCTGAACCAAAGATTTA-AA-A
gi|2 : AA--TTTTGA-GTCAAATAATTGCCTGAATTAAATAACTG-AATATT--AAGTATA-----AGTCAGTCACAGCT-GTTATAT-ATCTT-----AAAA-AATGTTGTCAAA-------T--CACAGCATAACTTTTCGAAGAG-AAATTAGC-GGCGATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATAT--AGGATCCTGAAA-GAAACGAAGT-TCAT-----GTAG-TAAC---------------CACACC-AA--CTC--CG---CTTT--------------------GAATGCCTGAATTGTCTCCGTCATCAGTGAACTGTCGTGCATTCTCGCAGA-------A------AC-----TTTG-T--A-GCGCGATA-AGACAAGAACAAAAATTAAAATGGC-----ATCTTGCA-----AAA--AAACAGC-CA------GAAAAATCTTTATG----AAAAATTTTAATAATGCTCTGTCATCAAAGAGCCTGGATTGATGAACGCTCAGG-AC------CTTC-----AT---AC------------------AA------------------------ATTCA--CATATTAAGACAAATGCAATTCGTCTGGCA-GACCTACGGCCTAAAACGAGAAATAA--TGCCTATAAC--TGCG--ATTCTAAATCAA--CAAGAAATGat
gi|3 : AAGACCCAAT-CTTAAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGATCAAAAA--CATACCACATGTCA-ATCAAAGAAAAGACAATAGCTCAGGCTCT-----GATTGACAGATTCAGCCAAGTG---CGT-CAA-C---TAGGTGTCCGAGATAGAAAAT-------TAAC--------CTA----A-GTA-TCA-A-C-CTCTTTCGTCTACC-GCA-----------AACACA-C-GG---TA-------TTTTTTAAA--TTTTGAATCTAA-TAATTACCTGAATTGAATATT---A----T--AGAT--ATA---AGTCAGTCAAAGCC-TTCATGT-A-CTTAAAAAAAAAAAAAGGTGTCAAAATCACGTA--C-GG----TACTTTTCAAAGA-GAAATTAGC-GGCGATTCAAGC-----T-------------TAA------------------GGATCTTGAAAGGACAA-ACGTAC-AT-CCCCGTCGTTAACTAC---ACCAG-CTCCGCGTCATA--A-------------------C--CATCATCGATAGAATGCCCGAATTGTCTCTGTTA----------GTCATGCAGTCTTGCAGAGAACAAGA------GCA----TTGG-TTAC-GCCAAATA-AACC-----CAAAA
gi|4 : CAAAGAG-AAATTAGC-AGTGATTCAAGC-----TT--TATTTCCTAATAACGATTGG-GA--CAT--GGGGTCCC-AAAAGAAAAGAAGT-T-----CCCATAG-TAACTAC---ACCAG-CTCGGCATC-TA--ATG--TGATTCATTCT---CCACCATCATCGATAGAATGTCCGAATTATCTCCGTCA----------GCCATGCATTCTCACAGAGA-----ACAGCAGACAGTC-TTGG-T--T-GTTTGATA-AA-C-----CAAAAAT------GAC-----ATCCTGCA-----AAA--A--CAGC-TACTGTCACAAAAATCTTT---TATGAAAAATTTTAACAATGCTTTGCTATCGAAGAGCCTGGATTGATGAACGCG-AGGTACATGTACCTTG-----ACAGAAA------------------AT------------------------CCAGAGCCACAC---A--AAATGCAATTCATCTGGCA-GACCAACTGCATAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTC---ATCAGATCAGGGGATGATTcagcaacctg
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCA----------GTGATACAGTCTCGCAGAGA-----ACAACA-GCA----TTGG-T--TAGCCCTGTA-GA-C-----CAAAAAT------GGC-----ATCCCACA-----AGATAA--TAGC-CACTTTCAGAAAAATCTTCATG---AAAAAAATTTAACAATCCTTTTCCATCAATGAGCCTGGATTAATGAACGCT-AGGTAC------CTTG-----ACAGAAAATCCAGATCAAGACAAACAA------------------------ATTGA--CGTAC---GACAAATGTGATTCTTCTGGCA-GACCTACGGCATAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTC---ATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|6 : CATG---AGTCAGTCACAGTTTGTTACGT-ATC------------AACATC----AAA--ATTATGGTACA----AACTTTT-GGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCGA--TGTTAAGGA----GATATAAAAGAAAGT-TCATGCTACGTA--TAA-TATTCAACCA-TCTCTGCA--------TC--TA---C---CT---CA---AT--TTGATAGAATGCCCAGATTGTCT-CGTCA----------GCCATGCAATTTCGCAG---------------AC-----TTGGTT--A-GCCTAATA-AAAC---------AAC------AACTCGTGATCGCGCATGCACAGA--A--CAACAAACTTTCCAGAAAACCTTatgcatgcagtcttacatgggacgtgtgtg
gi|7 : tttaagTAAATATTT--AA-ATTTTAGATA-----------ACTTACAACT-GCTATGT-ATC-------------ACGTCAACATCA--AGGTT--CA-------ACTTTTCTAATAG-AAATTTGC-GGCAGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GG--CAT--T--ATCTTGAAA-GAAAAGAAGT-T-GT-TTTT-CAG-TAA----------AGT-TCTGCACC-AG--GTC--TA---CATTC------------ATCGATATAATGTCCGGATTGTCTTTGTCA----------GACATGCATTCTCGCAGAG-------------AC-----TTCG-T--A-GCCCGAT--AAAC-----CAAATAC------GAC-----ATCCCGCGAC---AGA--A--CAAC-CACTTTCc
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTGG----CCGGTGATCAAAAA--CACATTGCATGTCA-TTCGAATGAGAGACAATGGCTCAGGCTCCGATTGGATTGGTAGATTTAGTCGAGTG---CGTTC-A-C---CGGATATCCGAGGGCGG-AATGTT---------------ACTACAC-G-GTA-TCA-ACC-C-CTTTCATCT--------------------TTTG-C-AG---TATCTTTTTTTTT---AA--CCTTGAGTCCAA-TAATTACATG-------TACCTG--A-ATT--AGATACATGTCAAGTTAATCACCTCT-GTT
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTGG----ATGGAGATAAAAAAAATATACTGCATGTCA-ATCAAATAAGCGACAATAGTTCAGGCTCT-----GATTGGCAGATTTAGCAAAGTG---C---A-G-CAAATAGATATCCAGGATC-GAAATGTTTCGATAGCAATTATAACTACACTC-GAA-ACA-A-TGC-CTTTCATCTA-C--CGT---AAAG-ACAATATC-CTGGTTTTTTGCTTTTTTCTTCACA--TTTTG-AGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1111 11111 44444444444 111 1111 22222222222222222 11111 666666666666666666666666 111 11 11111 11 222222222 444444444444 33333333333333333333 1 111111111 22222222 1 222222222 33333333333333 99999999999999999999999999999999 2222222222 777777777777777777777 1111 11111 111111 11111 22222 333333 222222 22222 22222222222222222222222222222222222222222222 11 111 11 11 11 111 1 1
lowQualScore : 5 5 11 2222 77 1 5 1 44444 1 1 22222222222 000 0 0 3333 2 777 66666666666666666 6 55555 6 777777777777777777777777 5 000 7 11 77 77 6 0 1 66666 11 555555555 6 8 3 999999999999 2 5 66666666666666666666 0 3 5 444444444 999 0 1 5 22222222 0 2 999999999 1 6 55555555555555 3 22222222222222222222222222222222 1 5555555555 1 333333333333333333333 5 4444 0 5 8 44444 999999 66666 55555 99999 6 1 3 6 888888 1 0 88 0 333333 00000 0 33333333333333333333333333333333333333333333 1 11 444 0 0 8 1 3 0 11 33 3 2 33 777 7 5 5
lowQualScore : . . .. .... .. . . . ..... . . ........... ... . . .... . ... ................. . ..... . ........................ . ... . .. .. .. . . . ..... .. ......... . . . ............ . . .................... . . . ......... ... . . . ........ . . ......... . . .............. . ................................ . .......... . ..................... . .... . . . ..... ...... ..... ..... ..... . . . . ...... . . .. . ...... ..... . ............................................ . .. ... . . . . . . .. .. . . .. ... . . .
lowQualScore : 7 7 11 1111 99 4 0 4 33333 4 3 44444444444 000 4 1 5555 5 222 00000000000000000 7 88888 7 333333333333333333333333 7 000 1 33 99 33 7 8 4 88888 00 999999999 7 0 8 111111111111 2 2 77777777777777777777 4 7 7 999999999 000 1 4 7 99999999 3 1 777777777 0 7 22222222222222 7 55555555555555555555555555555555 7 0000000000 6 666666666666666666666 7 6666 4 7 4 33333 222222 77777 88888 33333 7 0 0 4 888888 0 6 88 8 000000 00000 8 22222222222222222222222222222222222222222222 0 00 000 8 8 0 0 8 6 00 88 2 5 88 555 0 0 5
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCGTCAAAAAT-TT--CACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Reference ( family-2989 ) : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCGTCAAAAATNTT--CACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
gi|1 : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTGG----ACAGAGATCAAAAA--CATACCGCTTGTCA-ATCAAATA-GAGACAATAGCTCAGATTCT-----GATTGACAG-TGTAGCTGAGTG---T---C-AAC---TGGACACTCGAGAGCGTATATGTTTTGATAGCCATTACAACCGCAC-GCGCG-CCA-A-A-T-CTTTCATCTA-CCGCAGCGCAGAG-ATAACGTG-C-AG---TATGTTTTTTTTTTTAAA--TTATGAAGTCGA-TAATTACCTGAACTAAATATTTGAAA-ATT--AGA-ACAT----AGTCAGTCATAGCT-GTTTTGTAACCTG-----AAGAGAATGTCCTCAAAAATCTT--CAAA----A----ACTTTCCAAAGAGGAAACTAGC-GGGGGTTCAAGC-----TT--TATTCACTTATAACGATTGG-GA--T-T--GGAATCCTGAAAAGAGAAGAAGT-T-GT-GTCCGTAG-CAACGAC---ACCAGTTTCCGCACC-TAACATCCTTATC-CATCCTCAGCC--CATCATCGACAGAATGCCCCGATTGCCTTTGTCA----------GTCATGCGTTCTTGCAGAGA-----AG-----ACAATCCTTGG-T--G-GTCTGATATGGAC-----CGAAAAC------AAC-----AT-CCGTA-----AGA--A--CAGT-CATTGTCGGAAAA--CATTACGTAAAAAAAAAATGGACAATGCTTTGCCAT-GAGGAGCCTGGACTGACGATCGCT---GTAC------CTTGGGCGAGCAGAAA------------------AA------------------------ATGGA--CATGC---AACAAAAGCGATTCATCTGGCACGACATACTGAACAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTC---GGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|10 : AAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTTG----ACGGAGATCAAAAA--CATACCGCATGTCA-ATCACATTAGAGACAATAGCTCAGG---T-----G-----------TGGCCGAGTGCGTC---C-A-C---CAGGTATCCGAGTTCGG-AATGTTTTGATAGCAATT--AACTAAATGG-GTA-TCACC-C-C-CTTTCATCTACC-GC-----AAAG-A--------C-GG---CACGTTTTTTCTTCTTAA--TTTTG-AGTCGA-
gi|11 : GTCA-ATCAAATACAAGACAGCAGATCAGGCATT-----GACTGACAGACTTTACCAAATG-----------C---CTGATCTC--AGAT--GTAATCATTTTATAGCAATTAC--CTTCAA-GTGTATTTA-C-C-C-CTTTCATTCA-CTGCA----AAA--ATAAGTTGAC-AG---TATGCTTTTTa
gi|12 : attATCTTTA----TAAAAAAGCTGAACAAATTTTTGCCACCGAAGTTCATGGATTTACAAACGCT-AAGTAC------CTTG-----ACAGAAA------------------AAAATCCCTCAAAGCCATACCAATTAATTGA--CACAA---GACAGATGCAATTCATC-----------------TAAAATGAGAAATAA--
gi|13 : AAAGACCCAAC-TTTAAGCCAC-CC-------AATTTACCTGG----ACGGAGATCAAAAA--CAT--TGCTCTTCATATCAAACAc
gi|14 : cccaaaatatcagaaaattatagtattttcctttCCCAAT-TTTAAGCCAC-CTCCCTTAAA-TTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCACACAAGAGACAATAGTTCAGGCTTT-----GATTGACAGATGTGGCCAACTGCGTC---C-A-C---TGGA-ATCgtgatgcacatagggaactgtttatcaaatt
gi|15 : AGAATGACGTCTAAAATATC--TGCA----A----GTCTCTCGTAGGAAAAAGTAGC-GGCGATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-GA--C-T--GGAATACAGAACTGGGAAGAA
gi|16 : gaacgTCTCATCTA-CAGCA----AAAGTATAGTA---C-AA---TA-GTTTTTCTTC--AAAGGTTTCTAGGACGA-TAATTACCTGAACCAAAGATTTA-AA-A
gi|2 : AA--TTTTGA-GTCAAATAATTGCCTGAATTAAATAACTG-AATATT--AAGTATA-----AGTCAGTCACAGCT-GTTATAT-ATCTT-----AAAA-AATGTTGTCAAA-----T--CACAGCATA----ACTTTTCGAAGAG-AAATTAGC-GGCGATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATAT--AGGATCCTGAAA-GAAACGAAGT-TCAT-----GTAG-TAAC---------------CACACC-AA--CTC--CG---CTTT--------------------GAATGCCTGAATTGTCTCCGTCATCAGTGAACTGTCGTGCATTCTCGCAGA-------A------AC-----TTTG-T--A-GCGCGATA-AGACAAGAACAAAAATTAAAATGGC-----ATCTTGCA-----AAA--AAACAGC-CA------GAAAAATCTTTATG----AAAAATTTTAATAATGCTCTGTCATCAAAGAGCCTGGATTGATGAACGCTCAGG-AC------CTTC-----AT---AC------------------AA------------------------ATTCA--CATATTAAGACAAATGCAATTCGTCTGGCA-GACCTACGGCCTAAAACGAGAAATAA--TGCCTATAAC--TGCG--ATTCTAAATCAA--CAAGAAATGat
gi|3 : AAGACCCAAT-CTTAAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGATCAAAAA--CATACCACATGTCA-ATCAAAGAAAAGACAATAGCTCAGGCTCT-----GATTGACAGATTCAGCCAAGTG---CGT-CAA-C---TAGGTGTCCGAGATAGAAAAT-------TAAC--------CTA----A-GTA-TCA-A-C-CTCTTTCGTCTACC-GCA-----------AACACA-C-GG---TA-------TTTTTTAAA--TTTTGAATCTAA-TAATTACCTGAATTGAATATT---A----T--AGAT--ATA---AGTCAGTCAAAGCC-TTCATGT-A-CTTAAAAAAAAAAAAAGGTGTCAAAA----T--CACGT---ACGGTACTTTTCAAAGA-GAAATTAGC-GGCGATTCAAGC-----T-------------TAA------------------GGATCTTGAAAGGACAA-ACGTAC-AT-CCCCGTCGTTAACTAC---ACCAG-CTCCGCGTCATA--A-------------------C--CATCATCGATAGAATGCCCGAATTGTCTCTGTTA----------GTCATGCAGTCTTGCAGAGAACAAGA------GCA----TTGG-TTAC-GCCAAATA-AACC-----CAAAA
gi|4 : CAAAGAG-AAATTAGC-AGTGATTCAAGC-----TT--TATTTCCTAATAACGATTGG-GA--CAT--GGGGTCCC-AAAAGAAAAGAAGT-T-----CCCATAG-TAACTAC---ACCAG-CTCGGCATC-TA--ATG--TGATTCATTCT---CCACCATCATCGATAGAATGTCCGAATTATCTCCGTCA----------GCCATGCATTCTCACAGAGA-----ACAGCAGACAGTC-TTGG-T--T-GTTTGATA-AA-C-----CAAAAAT------GAC-----ATCCTGCA-----AAA--A--CAGC-TACTGTCACAAAAATCTTT---TATGAAAAATTTTAACAATGCTTTGCTATCGAAGAGCCTGGATTGATGAACGCG-AGGTACATGTACCTTG-----ACAGAAA------------------AT------------------------CCAGAGCCACAC---A--AAATGCAATTCATCTGGCA-GACCAACTGCATAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTC---ATCAGATCAGGGGATGATTcagcaacctg
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCA----------GTGATACAGTCTCGCAGAGA-----ACAACA-GCA----TTGG-T--TAGCCCTGTA-GA-C-----CAAAAAT------GGC-----ATCCCACA-----AGATAA--TAGC-CACTTTCAGAAAAATCTTCATG---AAAAAAATTTAACAATCCTTTTCCATCAATGAGCCTGGATTAATGAACGCT-AGGTAC------CTTG-----ACAGAAAATCCAGATCAAGACAAACAA------------------------ATTGA--CGTAC---GACAAATGTGATTCTTCTGGCA-GACCTACGGCATAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTC---ATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|6 : CATG---AGTCAGTCACAGTTTGTTACGT-ATC------------AACATC----AAAATTATGGTACA----A----ACTTTT-GGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCGA--TGTTAAGGA----GATATAAAAGAAAGT-TCATGCTACGTA--TAA-TATTCAACCA-TCTCTGCA--------TC--TA---C---CT---CA---AT--TTGATAGAATGCCCAGATTGTCT-CGTCA----------GCCATGCAATTTCGCAG---------------AC-----TTGGTT--A-GCCTAATA-AAAC---------AAC------AACTCGTGATCGCGCATGCACAGA--A--CAACAAACTTTCCAGAAAACCTTatgcatgcagtcttacatgggacgtgtgtg
gi|7 : tttaagTAAATATTT--AA-ATTTTAGATA-----------ACTTACAACT-GCTATGT-ATC-------------ACGTCAACATCAAGGTT--CA-----------ACTTTTCTAATAG-AAATTTGC-GGCAGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GG--CAT--T--ATCTTGAAA-GAAAAGAAGT-T-GT-TTTT-CAG-TAA----------AGT-TCTGCACC-AG--GTC--TA---CATTC------------ATCGATATAATGTCCGGATTGTCTTTGTCA----------GACATGCATTCTCGCAGAG-------------AC-----TTCG-T--A-GCCCGAT--AAAC-----CAAATAC------GAC-----ATCCCGCGAC---AGA--A--CAAC-CACTTTCc
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTGG----CCGGTGATCAAAAA--CACATTGCATGTCA-TTCGAATGAGAGACAATGGCTCAGGCTCCGATTGGATTGGTAGATTTAGTCGAGTG---CGTTC-A-C---CGGATATCCGAGGGCGG-AATGTT---------------ACTACAC-G-GTA-TCA-ACC-C-CTTTCATCT--------------------TTTG-C-AG---TATCTTTTTTTTT---AA--CCTTGAGTCCAA-TAATTACATG-------TACCTG--A-ATT--AGATACATGTCAAGTTAATCACCTCT-GTT
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTGG----ATGGAGATAAAAAAAATATACTGCATGTCA-ATCAAATAAGCGACAATAGTTCAGGCTCT-----GATTGGCAGATTTAGCAAAGTG---C---A-G-CAAATAGATATCCAGGATC-GAAATGTTTCGATAGCAATTATAACTACACTC-GAA-ACA-A-TGC-CTTTCATCTA-C--CGT---AAAG-ACAATATC-CTGGTTTTTTGCTTTTTTCTTCACA--TTTTG-AGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1111 11111 44444444444 111 1111 22222222222222222 11111 666666666666666666666666 111 11 11111 11 222222222 77777777777777777777777777777777777777777777777777 1 111111111 22222222 1 222222222 33333333333333 99999999999999999999999999999999 2222222222 777777777777777777777 1111 11111 111111 11111 22222 333333 222222 22222 22222222222222222222222222222222222222222222 11 111 11 11 11 111 1 1
lowQualScore : 5 5 11 2222 77 1 5 1 44444 1 1 22222222222 000 0 0 3333 2 777 66666666666666666 6 55555 6 777777777777777777777777 5 000 7 11 77 77 6 0 1 66666 11 555555555 6 8 3 00000000000000000000000000000000000000000000000000 0 3 5 444444444 999 0 1 5 22222222 0 2 999999999 1 6 55555555555555 3 22222222222222222222222222222222 1 5555555555 1 333333333333333333333 5 4444 0 5 8 44444 999999 66666 55555 99999 6 1 3 6 888888 1 0 88 0 333333 00000 0 33333333333333333333333333333333333333333333 1 11 444 0 0 8 1 3 0 11 33 3 2 33 777 7 5 5
lowQualScore : . . .. .... .. . . . ..... . . ........... ... . . .... . ... ................. . ..... . ........................ . ... . .. .. .. . . . ..... .. ......... . . . .................................................. . . . ......... ... . . . ........ . . ......... . . .............. . ................................ . .......... . ..................... . .... . . . ..... ...... ..... ..... ..... . . . . ...... . . .. . ...... ..... . ............................................ . .. ... . . . . . . .. .. . . .. ... . . .
lowQualScore : 7 7 11 1111 99 4 0 4 33333 4 3 44444444444 000 4 1 5555 5 222 00000000000000000 7 88888 7 333333333333333333333333 7 000 1 33 99 33 7 8 4 88888 00 999999999 7 0 8 11111111111111111111111111111111111111111111111111 4 7 7 999999999 000 1 4 7 99999999 3 1 777777777 0 7 22222222222222 7 55555555555555555555555555555555 7 0000000000 6 666666666666666666666 7 6666 4 7 4 33333 222222 77777 88888 33333 7 0 0 4 888888 0 6 88 8 000000 00000 8 22222222222222222222222222222222222222222222 0 00 000 8 8 0 0 8 6 00 88 2 5 88 555 0 0 5
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCG---TCAAAAAT-T-T--C-ACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Reference ( family-2989 ) : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCG---TCAAAAAT-T-T--C-ACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
gi|1 : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTGG----ACAGAGATCAAAAA--CATACCGCTTGTCA-ATCAAATA-GAGACAATAGCTCAGATTCT-----GATTGACAG-TGTAGCTGAGTG---T---C-AAC---TGGACACTCGAGAGCGTATATGTTTTGATAGCCATTACAACCGCAC-GCGCG-CCA-A-A-T-CTTTCATCTA-CCGCAGCGCAGAG-ATAACGTG-C-AG---TATGTTTTTTTTTTTAAA--TTATGAAGTCGA-TAATTACCTGAACTAAATATTTGAAA-ATT--AGA-ACAT----AGTCAGTCATAGCT-GTTTTGTAACCTG-----AAGAGAATGTCC---TCAAAAATCT-T--C-AAA----A----ACTTTCCAAAGAGGAAACTAGC-GGGGGTTCAAGC-----TT--TATTCACTTATAACGATTGG-GA--T-T--GGAATCCTGAAAAGAGAAGAAGT-T-GT-GTCCGTAG-CAACGAC---ACCAGTTTCCGCACC-TAACATCCTTATC-CATCCTCAGCC--CATCATCGACAGAATGCCCCGATTGCCTTTGTCA----------GTCATGCGTTCTTGCAGAGA-----AG-----ACAATCCTTGG-T--G-GTCTGATATGGAC-----CGAAAAC------AAC-----AT-CCGTA-----AGA--A--CAGT-CATTGTCGGAAAA--CATTACGTAAAAAAAAAATGGACAATGCTTTGCCAT-GAGGAGCCTGGACTGACGATCGCT---GTAC------CTTGGGCGAGCAGAAA------------------AA------------------------ATGGA--CATGC---AACAAAAGCGATTCATCTGGCACGACATACTGAACAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTC---GGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|10 : AAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTTG----ACGGAGATCAAAAA--CATACCGCATGTCA-ATCACATTAGAGACAATAGCTCAGG---T-----G-----------TGGCCGAGTGCGTC---C-A-C---CAGGTATCCGAGTTCGG-AATGTTTTGATAGCAATT--AACTAAATGG-GTA-TCACC-C-C-CTTTCATCTACC-GC-----AAAG-A--------C-GG---CACGTTTTTTCTTCTTAA--TTTTG-AGTCGA-
gi|11 : GTCA-ATCAAATACAAGACAGCAGATCAGGCATT-----GACTGACAGACTTTACCAAATG-----------C---CTGATCTC--AGAT--GTAATCATTTTATAGCAATTAC--CTTCAA-GTGTATTTA-C-C-C-CTTTCATTCA-CTGCA----AAA--ATAAGTTGAC-AG---TATGCTTTTTa
gi|12 : attATCTTTA----TAAAAAAGCTGAACAAATTTTTGCCACCGAAGTTCATGGATTTACAAACGCT-AAGTAC------CTTG-----ACAGAAA------------------AAAATCCCTCAAAGCCATACCAATTAATTGA--CACAA---GACAGATGCAATTCATC-----------------TAAAATGAGAAATAA--
gi|13 : AAAGACCCAAC-TTTAAGCCAC-CC-------AATTTACCTGG----ACGGAGATCAAAAA--CAT--TGCTCTTCATATCAAACAc
gi|14 : cccaaaatatcagaaaattatagtattttcctttCCCAAT-TTTAAGCCAC-CTCCCTTAAA-TTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCACACAAGAGACAATAGTTCAGGCTTT-----GATTGACAGATGTGGCCAACTGCGTC---C-A-C---TGGA-ATCgtgatgcacatagggaactgtttatcaaatt
gi|15 : AGAATGACG---TCTAAAAT-A-T--CTGCA----A----GTCTCTCGTAGGAAAAAGTAGC-GGCGATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-GA--C-T--GGAATACAGAACTGGGAAGAA
gi|16 : gaacgTCTCATCTA-CAGCA----AAAGTATAGTA---C-AA---TA-GTTTTTCTTC--AAAGGTTTCTAGGACGA-TAATTACCTGAACCAAAGATTTA-AA-A
gi|2 : AA--TTTTGA-GTCAAATAATTGCCTGAATTAAATAACTG-AATATT--AAGTATA-----AGTCAGTCACAGCT-GTTATAT-ATCTT-----AAAA-AATGTTG---TCAAA------T--C-ACAGCATA----ACTTTTCGAAGAG-AAATTAGC-GGCGATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATAT--AGGATCCTGAAA-GAAACGAAGT-TCAT-----GTAG-TAAC---------------CACACC-AA--CTC--CG---CTTT--------------------GAATGCCTGAATTGTCTCCGTCATCAGTGAACTGTCGTGCATTCTCGCAGA-------A------AC-----TTTG-T--A-GCGCGATA-AGACAAGAACAAAAATTAAAATGGC-----ATCTTGCA-----AAA--AAACAGC-CA------GAAAAATCTTTATG----AAAAATTTTAATAATGCTCTGTCATCAAAGAGCCTGGATTGATGAACGCTCAGG-AC------CTTC-----AT---AC------------------AA------------------------ATTCA--CATATTAAGACAAATGCAATTCGTCTGGCA-GACCTACGGCCTAAAACGAGAAATAA--TGCCTATAAC--TGCG--ATTCTAAATCAA--CAAGAAATGat
gi|3 : AAGACCCAAT-CTTAAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGATCAAAAA--CATACCACATGTCA-ATCAAAGAAAAGACAATAGCTCAGGCTCT-----GATTGACAGATTCAGCCAAGTG---CGT-CAA-C---TAGGTGTCCGAGATAGAAAAT-------TAAC--------CTA----A-GTA-TCA-A-C-CTCTTTCGTCTACC-GCA-----------AACACA-C-GG---TA-------TTTTTTAAA--TTTTGAATCTAA-TAATTACCTGAATTGAATATT---A----T--AGAT--ATA---AGTCAGTCAAAGCC-TTCATGT-A-CTTAAAAAAAAAAAAAGGTG---TCAAAA-----T--C-ACGT---ACGGTACTTTTCAAAGA-GAAATTAGC-GGCGATTCAAGC-----T-------------TAA------------------GGATCTTGAAAGGACAA-ACGTAC-AT-CCCCGTCGTTAACTAC---ACCAG-CTCCGCGTCATA--A-------------------C--CATCATCGATAGAATGCCCGAATTGTCTCTGTTA----------GTCATGCAGTCTTGCAGAGAACAAGA------GCA----TTGG-TTAC-GCCAAATA-AACC-----CAAAA
gi|4 : CAAAGAG-AAATTAGC-AGTGATTCAAGC-----TT--TATTTCCTAATAACGATTGG-GA--CAT--GGGGTCCC-AAAAGAAAAGAAGT-T-----CCCATAG-TAACTAC---ACCAG-CTCGGCATC-TA--ATG--TGATTCATTCT---CCACCATCATCGATAGAATGTCCGAATTATCTCCGTCA----------GCCATGCATTCTCACAGAGA-----ACAGCAGACAGTC-TTGG-T--T-GTTTGATA-AA-C-----CAAAAAT------GAC-----ATCCTGCA-----AAA--A--CAGC-TACTGTCACAAAAATCTTT---TATGAAAAATTTTAACAATGCTTTGCTATCGAAGAGCCTGGATTGATGAACGCG-AGGTACATGTACCTTG-----ACAGAAA------------------AT------------------------CCAGAGCCACAC---A--AAATGCAATTCATCTGGCA-GACCAACTGCATAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTC---ATCAGATCAGGGGATGATTcagcaacctg
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCA----------GTGATACAGTCTCGCAGAGA-----ACAACA-GCA----TTGG-T--TAGCCCTGTA-GA-C-----CAAAAAT------GGC-----ATCCCACA-----AGATAA--TAGC-CACTTTCAGAAAAATCTTCATG---AAAAAAATTTAACAATCCTTTTCCATCAATGAGCCTGGATTAATGAACGCT-AGGTAC------CTTG-----ACAGAAAATCCAGATCAAGACAAACAA------------------------ATTGA--CGTAC---GACAAATGTGATTCTTCTGGCA-GACCTACGGCATAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTC---ATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|6 : CATG---AGTCAGTCACAGTTTGTTACGT-ATC------------AACATC-------AAAAT-TATGGT-ACA----A----ACTTTT-GGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCGA--TGTTAAGGA----GATATAAAAGAAAGT-TCATGCTACGTA--TAA-TATTCAACCA-TCTCTGCA--------TC--TA---C---CT---CA---AT--TTGATAGAATGCCCAGATTGTCT-CGTCA----------GCCATGCAATTTCGCAG---------------AC-----TTGGTT--A-GCCTAATA-AAAC---------AAC------AACTCGTGATCGCGCATGCACAGA--A--CAACAAACTTTCCAGAAAACCTTatgcatgcagtcttacatgggacgtgtgtg
gi|7 : tttaagTAAATATTT--AA-ATTTTAGATA-----------ACTTACAACT-GCTATGT-ATC-------------ACGTCAACATCAAGG---T-T--C-A-----------ACTTTTCTAATAG-AAATTTGC-GGCAGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GG--CAT--T--ATCTTGAAA-GAAAAGAAGT-T-GT-TTTT-CAG-TAA----------AGT-TCTGCACC-AG--GTC--TA---CATTC------------ATCGATATAATGTCCGGATTGTCTTTGTCA----------GACATGCATTCTCGCAGAG-------------AC-----TTCG-T--A-GCCCGAT--AAAC-----CAAATAC------GAC-----ATCCCGCGAC---AGA--A--CAAC-CACTTTCc
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTGG----CCGGTGATCAAAAA--CACATTGCATGTCA-TTCGAATGAGAGACAATGGCTCAGGCTCCGATTGGATTGGTAGATTTAGTCGAGTG---CGTTC-A-C---CGGATATCCGAGGGCGG-AATGTT---------------ACTACAC-G-GTA-TCA-ACC-C-CTTTCATCT--------------------TTTG-C-AG---TATCTTTTTTTTT---AA--CCTTGAGTCCAA-TAATTACATG-------TACCTG--A-ATT--AGATACATGTCAAGTTAATCACCTCT-GTT
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTGG----ATGGAGATAAAAAAAATATACTGCATGTCA-ATCAAATAAGCGACAATAGTTCAGGCTCT-----GATTGGCAGATTTAGCAAAGTG---C---A-G-CAAATAGATATCCAGGATC-GAAATGTTTCGATAGCAATTATAACTACACTC-GAA-ACA-A-TGC-CTTTCATCTA-C--CGT---AAAG-ACAATATC-CTGGTTTTTTGCTTTTTTCTTCACA--TTTTG-AGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1111 11111 44444444444 111 1111 22222222222222222 11111 666666666666666666666666 111 11 11111 11 222222222 77777777777777777777777777777777777777777777777777 1 111111111 22222222 1 222222222 33333333333333 99999999999999999999999999999999 2222222222 777777777777777777777 1111 11111 111111 11111 22222 333333 222222 22222 22222222222222222222222222222222222222222222 11 111 11 11 11 111 1 1
lowQualScore : 5 5 11 2222 77 1 5 1 44444 1 1 22222222222 000 0 0 3333 2 777 66666666666666666 6 55555 6 777777777777777777777777 5 000 7 11 77 77 6 0 1 66666 11 555555555 6 8 3 00000000000000000000000000000000000000000000000000 0 3 5 444444444 999 0 1 5 22222222 0 2 999999999 1 6 55555555555555 3 22222222222222222222222222222222 1 5555555555 1 333333333333333333333 5 4444 0 5 8 44444 999999 66666 55555 99999 6 1 3 6 888888 1 0 88 0 333333 00000 0 33333333333333333333333333333333333333333333 1 11 444 0 0 8 1 3 0 11 33 3 2 33 777 7 5 5
lowQualScore : . . .. .... .. . . . ..... . . ........... ... . . .... . ... ................. . ..... . ........................ . ... . .. .. .. . . . ..... .. ......... . . . .................................................. . . . ......... ... . . . ........ . . ......... . . .............. . ................................ . .......... . ..................... . .... . . . ..... ...... ..... ..... ..... . . . . ...... . . .. . ...... ..... . ............................................ . .. ... . . . . . . .. .. . . .. ... . . .
lowQualScore : 7 7 11 1111 99 4 0 4 33333 4 3 44444444444 000 4 1 5555 5 222 00000000000000000 7 88888 7 333333333333333333333333 7 000 1 33 99 33 7 8 4 88888 00 999999999 7 0 8 11111111111111111111111111111111111111111111111111 4 7 7 999999999 000 1 4 7 99999999 3 1 777777777 0 7 22222222222222 7 55555555555555555555555555555555 7 0000000000 6 666666666666666666666 7 6666 4 7 4 33333 222222 77777 88888 33333 7 0 0 4 888888 0 6 88 8 000000 00000 8 22222222222222222222222222222222222222222222 0 00 000 8 8 0 0 8 6 00 88 2 5 88 555 0 0 5
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCG---TCAAAAAT-T-T--C-ACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Reference ( family-2989 ) : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCG---TCAAAAAT-T-T--C-ACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
gi|1 : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTGG----ACAGAGATCAAAAA--CATACCGCTTGTCA-ATCAAATA-GAGACAATAGCTCAGATTCT-----GATTGACAG-TGTAGCTGAGTG---T---C-AAC---TGGACACTCGAGAGCGTATATGTTTTGATAGCCATTACAACCGCAC-GCGCG-CCA-A-A-T-CTTTCATCTA-CCGCAGCGCAGAG-ATAACGTG-C-AG---TATGTTTTTTTTTTTAAA--TTATGAAGTCGA-TAATTACCTGAACTAAATATTTGAAA-ATT--AGA-ACAT----AGTCAGTCATAGCT-GTTTTGTAACCTG-----AAGAGAATGTCC---TCAAAAATCT-T--C-AAA----A----ACTTTCCAAAGAGGAAACTAGC-GGGGGTTCAAGC-----TT--TATTCACTTATAACGATTGG-GA--T-T--GGAATCCTGAAAAGAGAAGAAGT-T-GT-GTCCGTAG-CAACGAC---ACCAGTTTCCGCACC-TAACATCCTTATC-CATCCTCAGCC--CATCATCGACAGAATGCCCCGATTGCCTTTGTCA----------GTCATGCGTTCTTGCAGAGA-----AG-----ACAATCCTTGG-T--G-GTCTGATATGGAC-----CGAAAAC------AAC-----AT-CCGTA-----AGA--A--CAGT-CATTGTCGGAAAA--CATTACGTAAAAAAAAAATGGACAATGCTTTGCCAT-GAGGAGCCTGGACTGACGATCGCT---GTAC------CTTGGGCGAGCAGAAA------------------AA------------------------ATGGA--CATGC---AACAAAAGCGATTCATCTGGCACGACATACTGAACAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTC---GGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|10 : AAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTTG----ACGGAGATCAAAAA--CATACCGCATGTCA-ATCACATTAGAGACAATAGCTCAGG---T-----G-----------TGGCCGAGTGCGTC---C-A-C---CAGGTATCCGAGTTCGG-AATGTTTTGATAGCAATT--AACTAAATGG-GTA-TCACC-C-C-CTTTCATCTACC-GC-----AAAG-A--------C-GG---CACGTTTTTTCTTCTTAA--TTTTG-AGTCGA-
gi|11 : GTCA-ATCAAATACAAGACAGCAGATCAGGCATT-----GACTGACAGACTTTACCAAATG-----------C---CTGATCTC--AGAT--GTAATCATTTTATAGCAATTAC--CTTCAA-GTGTATTTA-C-C-C-CTTTCATTCA-CTGCA----AAA--ATAAGTTGAC-AG---TATGCTTTTTa
gi|12 : attATCTTTA----TAAAAAAGCTGAACAAATTTTTGCCACCGAAGTTCATGGATTTACAAACGCT-AAGTAC------CTTG-----ACAGAAA------------------AAAATCCCTCAAAGCCATACCAATTAATTGA--CACAA---GACAGATGCAATTCATC-----------------TAAAATGAGAAATAA--
gi|13 : AAAGACCCAAC-TTTAAGCCAC-CC-------AATTTACCTGG----ACGGAGATCAAAAA--CAT--TGCTCTTCATATCAAACAc
gi|14 : cccaaaatatcagaaaattatagtattttcctttCCCAAT-TTTAAGCCAC-CTCCCTTAAA-TTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCACACAAGAGACAATAGTTCAGGCTTT-----GATTGACAGATGTGGCCAACTGCGTC---C-A-C---TGGA-ATCgtgatgcacatagggaactgtttatcaaatt
gi|15 : AGAATGACG---TCTAAAAT-A-T--CTGCA----A----GTCTCTCGTAGGAAAAAGTAGC-GGCGATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-GA--C-T--GGAATACAGAACTGGGAAGAA
gi|16 : gaacgTCTCATCTA-CAGCA----AAAGTATAGTA---C-AA---TA-GTTTTTCTTC--AAAGGTTTCTAGGACGA-TAATTACCTGAACCAAAGATTTA-AA-A
gi|2 : AA--TTTTGA-GTCAAATAATTGCCTGAATTAAATAACTG-AATATT--AAGTATA-----AGTCAGTCACAGCT-GTTATAT-ATCTT-----AAAA-AATGTTG---TCAAA------T--C-ACAGCATA----ACTTTTCGAAGAG-AAATTAGC-GGCGATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATAT--AGGATCCTGAAA-GAAACGAAGT-TCAT-----GTAG-TAAC---------------CACACC-AA--CTC--CG---CTTT--------------------GAATGCCTGAATTGTCTCCGTCATCAGTGAACTGTCGTGCATTCTCGCAGA-------A------AC-----TTTG-T--A-GCGCGATA-AGACAAGAACAAAAATTAAAATGGC-----ATCTTGCA-----AAA--AAACAGC-CA------GAAAAATCTTTATG----AAAAATTTTAATAATGCTCTGTCATCAAAGAGCCTGGATTGATGAACGCTCAGG-AC------CTTC-----AT---AC------------------AA------------------------ATTCA--CATATTAAGACAAATGCAATTCGTCTGGCA-GACCTACGGCCTAAAACGAGAAATAA--TGCCTATAAC--TGCG--ATTCTAAATCAA--CAAGAAATGat
gi|3 : AAGACCCAAT-CTTAAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGATCAAAAA--CATACCACATGTCA-ATCAAAGAAAAGACAATAGCTCAGGCTCT-----GATTGACAGATTCAGCCAAGTG---CGT-CAA-C---TAGGTGTCCGAGATAGAAAAT-------TAAC--------CTA----A-GTA-TCA-A-C-CTCTTTCGTCTACC-GCA-----------AACACA-C-GG---TA-------TTTTTTAAA--TTTTGAATCTAA-TAATTACCTGAATTGAATATT---A----T--AGAT--ATA---AGTCAGTCAAAGCC-TTCATGT-A-CTTAAAAAAAAAAAAAGGTG---TCAAAA-----T--C-ACGT---ACGGTACTTTTCAAAGA-GAAATTAGC-GGCGATTCAAGC-----T-------------TAA------------------GGATCTTGAAAGGACAA-ACGTAC-AT-CCCCGTCGTTAACTAC---ACCAG-CTCCGCGTCATA--A-------------------C--CATCATCGATAGAATGCCCGAATTGTCTCTGTTA----------GTCATGCAGTCTTGCAGAGAACAAGA------GCA----TTGG-TTAC-GCCAAATA-AACC-----CAAAA
gi|4 : CAAAGAG-AAATTAGC-AGTGATTCAAGC-----TT--TATTTCCTAATAACGATTGG-GA--CAT--GGGGTCCC-AAAAGAAAAGAAGT-T-----CCCATAG-TAACTAC---ACCAG-CTCGGCATC-TA--ATG--TGATTCATTCT---CCACCATCATCGATAGAATGTCCGAATTATCTCCGTCA----------GCCATGCATTCTCACAGAGA-----ACAGCAGACAGTC-TTGG-T--T-GTTTGATA-AA-C-----CAAAAAT------GAC-----ATCCTGCA-----AAA--A--CAGC-TACTGTCACAAAAATCTTT---TATGAAAAATTTTAACAATGCTTTGCTATCGAAGAGCCTGGATTGATGAACGCG-AGGTACATGTACCTTG-----ACAGAAA------------------AT------------------------CCAGAGCCACAC---A--AAATGCAATTCATCTGGCA-GACCAACTGCATAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTC---ATCAGATCAGGGGATGATTcagcaacctg
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCA----------GTGATACAGTCTCGCAGAGA-----ACAACA-GCA----TTGG-T--TAGCCCTGTA-GA-C-----CAAAAAT------GGC-----ATCCCACA-----AGATAA--TAGC-CACTTTCAGAAAAATCTTCATG---AAAAAAATTTAACAATCCTTTTCCATCAATGAGCCTGGATTAATGAACGCT-AGGTAC------CTTG-----ACAGAAAATCCAGATCAAGACAAACAA------------------------ATTGA--CGTAC---GACAAATGTGATTCTTCTGGCA-GACCTACGGCATAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTC---ATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|6 : CATG---AGTCAGTCACAGTTTGTTACGT-ATC------------AACATC-------AAAAT-TATGGT-ACA----A----ACTTTT-GGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCGA--TGTTAAGGA----GATATAAAAGAAAGT-TCATGCTACGTA--TAA-TATTCAACCA-TCTCTGCA--------TC--TA---C---CT---CA---AT--TTGATAGAATGCCCAGATTGTCT-CGTCA----------GCCATGCAATTTCGCAG---------------AC-----TTGGTT--A-GCCTAATA-AAAC---------AAC------AACTCGTGATCGCGCATGCACAGA--A--CAACAAACTTTCCAGAAAACCTTatgcatgcagtcttacatgggacgtgtgtg
gi|7 : tttaagTAAATATTT--AA-ATTTTAGATA-----------ACTTACAACT-GCTATGT-ATC-------------ACGTCAACATCAAGG---T-T--C-A-----------ACTTTTCTAATAG-AAATTTGC-GGCAGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GG--CAT--T--ATCTTGAAA-GAAAAGAAGT-T-GT-TTTT-CAG-TAA----------AGT-TCTGCACC-AG--GTC--TA---CATTC------------ATCGATATAATGTCCGGATTGTCTTTGTCA----------GACATGCATTCTCGCAGAG-------------AC-----TTCG-T--A-GCCCGAT--AAAC-----CAAATAC------GAC-----ATCCCGCGAC---AGA--A--CAAC-CACTTTCc
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTGG----CCGGTGATCAAAAA--CACATTGCATGTCA-TTCGAATGAGAGACAATGGCTCAGGCTCCGATTGGATTGGTAGATTTAGTCGAGTG---CGTTC-A-C---CGGATATCCGAGGGCGG-AATGTT---------------ACTACAC-G-GTA-TCA-ACC-C-CTTTCATCT--------------------TTTG-C-AG---TATCTTTTTTTTT---AA--CCTTGAGTCCAA-TAATTACATG-------TACCTG--A-ATT--AGATACATGTCAAGTTAATCACCTCT-GTT
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTGG----ATGGAGATAAAAAAAATATACTGCATGTCA-ATCAAATAAGCGACAATAGTTCAGGCTCT-----GATTGGCAGATTTAGCAAAGTG---C---A-G-CAAATAGATATCCAGGATC-GAAATGTTTCGATAGCAATTATAACTACACTC-GAA-ACA-A-TGC-CTTTCATCTA-C--CGT---AAAG-ACAATATC-CTGGTTTTTTGCTTTTTTCTTCACA--TTTTG-AGTC
blockSeqs : . A TC GATC AA T T A GATTG A T CGTCCA AAA AGAA G TTG AATTATAACTACACTC T CCC T CTGCAAAAATAAGTTGA T TTT C CT GG AG A C GAAT TT TACATGTCA T . T TTAAAAAAAAAAAAAGGTGTCAAAATCACGTACGGT A T ATTATTTCG GCA T C AATATA T TCATGCTA G T TATTCAACCATC C TAATGTGATTCATTCTCCACCATC C TCAGTGAACT T GAACAGCAGACAGTC T TAC . A AAGAA TAAAAT TCGTG TGCAC AAA A C G A ATG G CA ATGTAC . AAAATCCCTCAAAGCCATACCAATTA T GC TAA . T G TT TA T C . TAA A . T
blockSeqs : . . TC . . C . C . A G CGTCCA . CGG C TTT AATTAACTAAATGG . ACC . CAGCAAAAGTATAGTA . . T TT . AA . T AAA . TATA . . T TTAAAAAATGTTGTCAAATCACAGCATA G . AT GCA T . TGTTAA G ACATCCC G . CTACACCAGC T AGGTCTACATTC C . G GAACAAGAGCA . TA . C . . . AC TAA . C T A TAT T A . . ATCCAGATCAAGACAAACAA T . . . A T . . T C . . A
blockSeqs : . . CC . . C . A . A T CGTCAA . CGG G TCG AATTACCTTCAAGT . ATG . CCGTAAAGACAATATC . . T TC . AG . T AA . TATA . . T AACATCAAAATTATGGTACAA G . TT CCT T . CATG A TGTTTT A . CTACACCAGC T AACTCCGCTTT C . T GAACAACAGCA . A . A . . . . A . C T C ATG T A . . AA A . . . T G . . . C . . .
blockSeqs : . . GC . . T . A . A T CGTTCA . CGA G . ACTACACG . CC . CCGCAAACACA . . T . . A . . GA . TA . . . ACGTCAACATCAAGGTTCA . . TT ACT T . CATT T TCAT G . AGT C TCTACCTCAAT C . G AAC . T . A . . . . A . C T . AT A A . . AT T . . . . . .
blockSeqs : . . TA . . T . A . A T CAG . GT . . CTAA . AC . CCGCAAAGA . . . . . A . A . . . TT C . . CTG . TCC . . C . ATAACCATC T . A GAC . A . . . . . . A . . .
blockSeqs : . . C . . T . A . . . . . TTTG . . . . A . . T . . . . . . . T AC . A . . .
blockSeqs : .
blockSeqCons : CGTCCA***** CGG* AATTACTACGC****** ACC** CCGCAAAACAATGA********** A* GA*** AACGTCGCAAATCACGGTACG***************************** CGTA**** TCATCC*** TACACCAGC***** ATCTACACTC********************** ATG*** A* *****
originalCons : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTG---C---C-A-C---CGGATATCCGAGATCGGAAATGTTTTGATAGCAATTACAACTACAC-G-GTA-TCA-A-C-C-CTTTCATCTA-C-GCA----AAAG-ATAATNTG-C-GG---TATGTTTTTTTTTTTAAA--TTTTGAAGTCGA-TAATTACCTGAACTAAATATTTG-AA-ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCTT-----AAAAGAACGTCG---TCAAAAAT-T-T--C-ACA----A----ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGT-T-AT-CTCCGTAG-TAACTAC---ACCAGTCTCCGCACC-TA--ATC--TA---CATTCT---CC--CATCATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTACGTATAAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AGGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
finalCons : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTGCGTCCA-----C---CGGATATCCGAGATCGG-AATGTTTTGATAGCAATTACTACGC------GTA-TCAACC--C-CTTTCATCTACCGCAAAACAATGA----------C-GG---TATGTTTTTTTTTTTAAA--TTTTGA-GTCGA-TAATTACCTGAACTAAATATTTGA---ATT--AGATACATG---AGTCAGTCACAGCT-GTTATGT-ATCAACGTCGCAAATCACGGTACG-----------------------------ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GACGTA----GGATCCTGAAANGAAAAGAAGTTCATCC---CGTAG-TAATACACCAGC-----TCCGCACCATCTACACTC----------------------ATCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTTATG---AAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCTA-GGTAC------CTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Alignments
lowQualScore : 1111111111111111111111111111111 111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 1111 11111 5555555555555555555555 777777777777777777777777777 11 111 11111 222222222 0000000000000000000000000000000 22222 111111111 1 111111111 33333333 1 33333333 33333333 111111111111111111111111111111111 2222222222 777777777777777777777 1111 11111 111111 11111 22222 111 11 333333333 22222 22222222222222222222222222222222222222222222 11 111 11 11 11 111 1 1
lowQualScore : 5 5 11 2222 77 1 5 2 44444 2 1 1 0 4 0 0 6 1 6 99999 4444444444444444444444 1 5 0 111111111111111111111111111 7 11 000 5 5 5 6 0 1 99 33333 555555555 6 8 5555555555555555555555555555555 00000 888888888 0 3 5 444444444 999 0 1 5 33333333 0 2 22222222 6 44444444 6 888888888888888888888888888888888 99 1 5555555555 1 333333333333333333333 5 4444 0 5 8 44444 999999 66666 55555 99999 6 1 3 6 8 444 11 0 000000000 0 00000 0 33333333333333333333333333333333333333333333 1 11 444 0 0 8 1 3 0 11 33 3 2 33 777 7 5 5
lowQualScore : . . .. .... .. . . . ..... . . . . . . . . . . ..... ...................... . . . ........................... . .. ... . . . . . . .. ..... ......... . . ............................... ..... ......... . . . ......... ... . . . ........ . . ........ . ........ . ................................. .. . .......... . ..................... . .... . . . ..... ...... ..... ..... ..... . . . . . ... .. . ......... . ..... . ............................................ . .. ... . . . . . . .. .. . . .. ... . . .
lowQualScore : 7 7 11 1111 99 4 0 2 33333 3 4 3 7 3 4 1 7 0 7 55555 5555555555555555555555 0 7 1 000000000000000000000000000 1 33 000 7 7 7 7 8 4 22 00000 999999999 7 0 4444444444444444444444444444444 00000 444444444 4 7 7 999999999 000 1 4 7 11111111 3 1 22222222 7 33333333 7 555555555555555555555555555555555 22 7 0000000000 6 666666666666666666666 7 6666 4 7 4 33333 222222 77777 88888 33333 7 0 0 4 0 000 66 6 000000000 8 00000 8 22222222222222222222222222222222222222222222 0 00 000 8 8 0 0 8 6 00 88 2 5 88 555 0 0 5
consensus : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTGCGTCNACCGGATATCCGAGATCGGA-ATGTTTTGATAGCAATT---A--C-----T--ACG--C-GTATCAACCCCTTTCATCTACCGC-AAA-ACA---A--TA--AC--G----G---TATGTTTTTTTTTTTAAA---TTTTG-AGT-C-GA-TAATTACCTGAACTAAATATTTG--AAT--T--AGATACATG---AGTCAGTCACAGCT-GTTATGTA-TC-T-AA---AA-------------CGT-CG-CAAA-----TCACGGTACA--ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CAT--GGGATCCTGAAANGAAAAGAAGTTCAT-TC--CGTAG-TAA-T-AC---ACCAG-CTCCGCACC-----------A--T-CTAC-C--------TCA--TCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTT-ATG---AAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AG------GTACCTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
Reference ( family-2989 ) : AAAGACCCAAT-TTTAAGCCAC-CCCCCTTAAAATTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCAAATAAGAGACAATAGCTCAGGCTCT-----GATTGACAGATTTAGCCGAGTGCGTCCACCGGATATCCGAGATCGGA-ATGTTTTGATAGCAATT---A--C-----T--ACG--C-GTATCAACCCCTTTCATCTACCGC-AAA-ACA---A--TG--AC--G----G---TATGTTTTTTTTTTTAAA---TTTTG-AGT-C-GA-TAATTACCTGAACTAAATATTTG--AAT--T--AGATACATG---AGTCAGTCACAGCT-GTTATGTA-TC--------AA-------------CGT-CG-CAAA-----TCACGGTACG--ACTTTTCGAAGAGGAAATTAGC-GGCGATTCAAGC-----TT--TATTTGCNTATAACGATTGG-GA--CGT--AGGATCCTGAAANGAAAAGAAGTTCAT-CC--CGTAG-TAA-T-AC---ACCAG-CTCCGCACC-----------A--T-CTACAC--------TCA--TCGATAGAATGCCCGGATTGTCTCCGTCA----------GTCATGCATTCTCGCAGAGA-----A------ACA----TTGG-T--N-GCCCGATA-AAAC-----CAAAAAC------GAC-----ATCCCGCA-----AGA--A--CAGC-CACTTTCGGAAAAATCTTT-ATG---AAAAAANTTTAACAATGCTTTGCCATCGAAGAGCCTGGATTGACGAACGCT-AG------GTACCTTG-----ACAGAAA------------------AA------------------------ATTGA--CATAC---GACAAATGCGATTCATCTGGCA-GACCTACNGCATAAAACGAGAAATAA--TGCC--TAACTGTGCG--ATTC---ATCAGATCAGGGAATGGTTGCCAAATCCCTGGTGGAC
gi|1 : AAACACCCATTCTTTAAGCCAC-TCCCTTTAAAATTTACCTGG----ACAGAGATCAAAAA--CATACCGCTTGTCA-ATCAAAT-AGAGACAATAGCTCAGATTCT-----GATTGACAG-TGTAGCTGAGT--GTCAACTGGACACTCGAGAGCGTATATGTTTTGATAGCCATT---A--CAACCGC--ACG--C-GCGCCAA-ATCTTTCATCTACCGC-AGC-GCAGAGA--TA--AC--GTGCAG---TATGTTTTTTTTTTTAAA---TTATGAAGT-C-GA-TAATTACCTGAACTAAATATTTGAAAAT--T--AGA-ACAT----AGTCAGTCATAGCT-GTTTTGTA-ACCTGAAGAGAA-------------TGTCCT-CAAAAATCTTCA----AAA--ACTTTCCAAAGAGGAAACTAGC-GGGGGTTCAAGC-----TT--TATTCACTTATAACGATTGG-GA--T-T--GGAATCCTGAAAAGAGAAGAAGTTGTG-TC--CGTAG-CAA-CGAC---ACCAGTTTCCGCACCTAACATCCTT-A--T-CCATCCTCAGCCCATCA--TCGACAGAATGCCCCGATTGCCTTTGTCA----------GTCATGCGTTCTTGCAGAGA-----AG-----ACAATCCTTGG-T--G-GTCTGATATGGAC-----CGAAAAC------AAC-----AT-CCGTA-----AGA--A--CAGT-CATTGTCGGAAAA--CATT-ACGTAAAAAAAAAATGGACAATGCTTTGCCAT-GAGGAGCCTGGACTGACGATCGCT---------GTACCTTGGGCGAGCAGAAA------------------AA------------------------ATGGA--CATGC---AACAAAAGCGATTCATCTGGCACGACATACTGAACAAAACGGGAAATAA--TGCC--CAACTGTG-GTTATTC---GGCAGGTCAGGGAATGGTTACCAAATCCCTGG-GGAC
gi|10 : AAAAACCCAAT-TTTAAGCTTC-CTCCCTTATAATTTACCTTG----ACGGAGATCAAAAA--CATACCGCATGTCA-ATCACATTAGAGACAATAGCTCAGG------------TG-------TGGCCGAGTGCGTCCACCAGGTATCCGAGTTCGGA-ATGTTTTGATAGCAATTA--A--C-----TAAATG--G-GTATCACCCCCTTTCATCTACCGC-AAA-----------G--AC--G----G---CACGTTTTTTCTTCTTAA---TTTTG-AGT-C-GA-
gi|11 : GTCA-ATCAAATACAAGACAGCAGATCAGGCATT-----GACTGACAGACTTTACCAAATG------CCTGATCTC--AGAT-GTA-ATCATTTTATAGCAATT---A--CCTT--C--AAG--T-GTATTTACCCCTTTCATTCACTGCAAAA-ATA---AGTTG--AC--A----G---TATGCTTTTTa
gi|12 : attATCTTT-AT----AAAAAAGCTGAACAAATTTTTGCCACCGAAGTTCATGGATTTACAAACGCT-AA------GTACCTTG-----ACAGAAA------------------AAAATCCCTCAAAGCCATACCAATTAATTGA--CACAA---GACAGATGCAATTCATC-----------------TAAAATGAGAAATAA--
gi|13 : AAAGACCCAAC-TTTAAGCCAC-CC-------AATTTACCTGG----ACGGAGATCAAAAA--CAT--TGCTCTTCATATCAAACAc
gi|14 : cccaaaatatcagaaaattatagtattttcctttCCCAAT-TTTAAGCCAC-CTCCCTTAAA-TTTACCTGG----ACGGAGATCAAAAA--CATACCGCACGTCA-ATCACACAAGAGACAATAGTTCAGGCTTT-----GATTGACAGATGTGGCCAACTGCGTCCACTGGA-ATCgtgatgcacatagggaactgtttatcaaatt
gi|15 : TCTCGTAGGAAAAAGTAGC-GGCGATCCGGGC-----AT--TGTTTGCATACAACGA-TGG-GA--C-T--GGAATACAGAACTGGGAAGAA
gi|16 : gaacgagaatgacgtctaaaatatctgcaagtcTCTCATCTACAGC-AAA-AGT---A--TAGTAC--A----A---TA-GTTTTTCTTC--AAAGGTTTCTA-GGA-C-GA-TAATTACCTGAACCAAAGATTTA--AA
gi|2 : AA---TTTTG-AGT-C-AAATAATTGCCTGAATTAAATAACTG--AATATT--AAGTATA-----AGTCAGTCACAGCT-GTTATATA-TCTTAAAA--AA-------------TGT-TGTCAAA-----TCACAGCATA--ACTTTTCGAAGAG-AAATTAGC-GGCGATTTAATC-----TT--TATTTGCATATAGCAATTGG-GAAATAT--AGGATCCTGAAA-GAAACGAAGTTCAT------GTAG-TAA-CCAC---ACCAA-CTCCGC-----------------T-TT-----------------------GAATGCCTGAATTGTCTCCGTCATCAGTGAACTGTCGTGCATTCTCGCAGA-------A------AC-----TTTG-T--A-GCGCGATA-AGACAAGAACAAAAATTAAAATGGC-----ATCTTGCA-----AAA--AAACAGC-CA------GAAAAATCTTT-ATG---AAAAA-TTTTAATAATGCTCTGTCATCAAAGAGCCTGGATTGATGAACGCTCAG------G-ACCTTC-----AT---AC------------------AA------------------------ATTCA--CATATTAAGACAAATGCAATTCGTCTGGCA-GACCTACGGCCTAAAACGAGAAATAA--TGCCTATAAC--TGCG--ATTCTAAATCAA--CAAGAAATGaat
gi|3 : AAGACCCAAT-CTTAAGCCATATCCCCTTAAAATTCACCCGAGATCATGGAGATCAAAAA--CATACCACATGTCA-ATCAAAGAAAAGACAATAGCTCAGGCTCT-----GATTGACAGATTCAGCCAAGTGCGTCAACTAGGTGTCCGAGAT-AGA-A------------AATT---AACC-----T--A----A-GTATCAACCTCTTTCGTCTACCGC-AAACAC-----------AC--G----G---TA-------TTTTTTAAA---TTTTG-AAT-CTAA-TAATTACCTGAATTGAATATT----A----T--AGAT--ATA---AGTCAGTCAAAGCC-TTCATGTACTT--------AAAAAAAAAAAAAGGTGT-CA--AAA-----TCAC-GTACGGTACTTTTCAAAGA-GAAATTAGC-GGCGATTCAAGC-----T-------------TAA------------------GGATCTTGAAAGGACAA-ACGTACATCCC--CGTCGTTAACT-AC---ACCAG-CTCCGCGTC-----------A--T-A-ACCA--------TCA--TCGATAGAATGCCCGAATTGTCTCTGTTA----------GTCATGCAGTCTTGCAGAGAACAAGA------GCA----TTGG-TTAC-GCCAAATA-AACC-----CAAAA
gi|4 : CAAAGAG-AAATTAGC-AGTGATTCAAGC-----TT--TATTTCCTAATAACGATTGG-GA--CAT--GGGGTCCC-AAAAGAAAAGAAGTTC----C--CATAG-TAACT-AC---ACCAG-CTCGGCATCTAATGTGATTCA--TTCTCCACCA------TCA--TCGATAGAATGTCCGAATTATCTCCGTCA----------GCCATGCATTCTCACAGAGA-----ACAGCAGACAGTC-TTGG-T--T-GTTTGATA-AA-C-----CAAAAAT------GAC-----ATCCTGCA-----AAA--A--CAGC-TACTGTCACAAAAATCTTTTATG---AAAAA-TTTTAACAATGCTTTGCTATCGAAGAGCCTGGATTGATGAACGCG-AGGTACATGTACCTTG-----ACAGAAA------------------AT------------------------CCAGAGCCACAC---A--AAATGCAATTCATCTGGCA-GACCAACTGCATAAAATTAGAAATAA--TGCC--TAATTGTGCG--ATTC---ATCAGATCAGGGGATGATTcagcaacctg
gi|5 : ATAGACTTCCCGGATTGTCTCTGTCA----------GTGATACAGTCTCGCAGAGA-----ACAACA-GCA----TTGG-T--TAGCCCTGTA-GA-C-----CAAAAAT------GGC-----ATCCCACA-----AGATAA--TAGC-CACTTTCAGAAAAATCTTC-ATG---AAAAAAATTTAACAATCCTTTTCCATCAATGAGCCTGGATTAATGAACGCT-AG------GTACCTTG-----ACAGAAAATCCAGATCAAGACAAACAA------------------------ATTGA--CGTAC---GACAAATGTGATTCTTCTGGCA-GACCTACGGCATAAAATGAGAAATAATTTGCC--TAACTGTACG--ATTC---ATCAGATCAGGGAATGGTTGCCAAAT-TCTGATGGAC
gi|6 : CATG---AGTCAGTCACAGTTTGTTACGTA-TC--------AA-------------CAT-CA--AAA-----TTATGGTACA--AACTTTTGGTGGGGAAATTAGCTGGTGATTCAAGC-----TT--TATTT--CTA-AACGATTGGCGA--TGTTAAGGA----GATATAAAAGAAAGTTCAT-GCTACGTA--TAA-T-ATTCAACCAT-CTCTGCA----------------T-CTAC-C--------TCAATTTGATAGAATGCCCAGATTGTCT-CGTCA----------GCCATGCAATTTCGCAG---------------AC-----TTGGTT--A-GCCTAATA-AAAC---------AAC------AACTCGTGATCGCGCATGCACAGA--A--CAACAAACTTTCCAGAAAACCTTatgcatgcagtcttacatgggacgtgtgtg
gi|7 : tttaagTAAATATTTA--AAT--TTTAGATA-----------ACTTACAACT-GCTATGTA-TC--------A--------------CGT-CA--ACA-----TCAAGGTTCA--ACTTTTCTAATAG-AAATTTGC-GGCAGTTCCAGCATTATTTCGTATTTACTTATAACCATTGG-GG--CAT----TATCTTGAAA-GAAAAGAAGTT-GT-TT--TTCAG-TAA-----------AG-TTCTGCACC-----------AGGT-CTACAT--------TCA--TCGATATAATGTCCGGATTGTCTTTGTCA----------GACATGCATTCTCGCAGAG-------------AC-----TTCG-T--A-GCCCGAT--AAAC-----CAAATAC------GAC-----ATCCCGCGAC---AGA--A--CAAC-CACTTTCc
gi|8 : AAGACCTAAT-TTGAAGCCAC-TGCCCTTAAAATTTACCTGG----CCGGTGATCAAAAA--CACATTGCATGTCA-TTCGAATGAGAGACAATGGCTCAGGCTCCGATTGGATTGGTAGATTTAGTCGAGTGCGTTCACCGGATATCCGAGGGCGGA-ATG------------TT---A--C-----T--ACA--CGGTATCAACCCCTTTCATCTTTTGC-A-------------------------G---TATCTTTTTTTTT---AA---CCTTG-AGTCC-AA-TAATTACATG-------TACCTG--AAT--T--AGATACATGTCAAGTTAATCACCTCT-GTT
gi|9 : AAAGACCCAAT-TTTAAGTCAC-CTACCTTAAAATTTACCTGG----ATGGAGATAAAAAAAATATACTGCATGTCA-ATCAAATAAGCGACAATAGTTCAGGCTCT-----GATTGGCAGATTTAGCAAAGTGCAGCAAATAGATATCCAGGATCGAA-ATGTTTCGATAGCAATTATAA--C-----T--ACACTC-GAAACAATGCCTTTCATCTACCGT-AAAGACA---A--TA--TCCTG----GTTTTTTGCTTTTTTCTTCACA---TTTTG-AGT-C-