lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 333333333 6666666666666666666 1 1111 2222222 1111111111 333333333333 222222222222 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111 1111 11 2222 11 55555555555555555 11111 111111111 44444444444444444444444444444444444444444444444444444444444444444444 22222222222 222222222222222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 3333 555555555555555 2 1111 22222222 6666666666666666666666666666666666666666 1111 4444444444 2 2222222222222222 1 22222 222222 2 4444444444444444 11111 2222 222 111 1
lowQualScore : 5 5 777777777 55 7777 3 0000000000000000000 4 3 0 5555 3 3 0000000 88888 3333333333 3 77777 3 3 3 555555555555 3 000000000000 3 44 44 44 3 555 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 44 5555555555555555 2 2 2 555 2 4444 6 6 6 2 555 11 3 9999 3 9999 11 88888888888888888 88888 1 3 44 888 3 44 44 3 3 1 3 3 6666 00000 3 33 2 33 2 333333333 3 33 33333333333333333333333333333333333333333333333333333333333333333333 66666666666 2 33 999999999999999999 0 5555 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33 2 2 2 2 0000 44 2 5555 33 999999999999999 44 44 55 55 3 44 4 3 44 4444 55 3 3 7 3 66666666 44 6 3 4444444444444444444444444444444444444444 3 0000 8888 3 3 4444444444 44 1 4 0 5555555555555555 3 555 2 0 3 44 3 44 3 3 44 4 44 55555 3 44 444444 9 77 3 3 3 3 888 3 3 3 3 3333333333333333 11111 0000 666 3 3 111 3 77 9 44 999 3 77 000 3 8
lowQualScore : . . ......... .. .... . ................... . . . .... . . ....... ..... .......... . ..... . . . ............ . ............ . .. .. .. . ... . ................................................................................... .. ................ . . . ... . .... . . . . ... .. . .... . .... .. ................. ..... . . .. ... . .. .. . . . . . .... ..... . .. . .. . ......... . .. .................................................................... ........... . .. .................. . .... . ........................................................................................................................................... .. . . . . .... .. . .... .. ............... .. .. .. .. . .. . . .. .... .. . . . . ........ .. . . ........................................ . .... .... . . .......... .. . . . ................ . ... . . . .. . .. . . .. . .. ..... . .. ...... . .. . . . . ... . . . . ................ ..... .... ... . . ... . .. . .. ... . .. ... . .
lowQualScore : 0 0 999999999 00 7777 3 0000000000000000000 2 1 0 1111 1 1 0000000 33333 8888888888 3 77777 1 1 1 000000000000 5 222222222222 1 22 22 11 1 444 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 9999999999999999 9 9 9 000 9 9999 2 2 2 3 888 88 3 0000 6 8888 44 11111111111111111 33333 8 3 66 555 1 22 22 1 1 7 3 3 3333 99999 7 99 9 99 9 888888888 1 44 55555555555555555555555555555555555555555555555555555555555555555555 66666666666 5 33 444444444444444444 7 3333 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 44 5 5 5 5 1111 99 5 4444 44 888888888888888 22 66 77 00 3 22 6 1 22 8888 00 6 6 5 3 00000000 66 7 3 2222222222222222222222222222222222222222 3 4444 2222 3 3 8888888888 66 2 5 4 4444444444444444 1 000 9 2 2 22 1 22 1 1 22 5 22 88888 1 22 555555 2 33 1 1 1 0 555 1 1 1 1 3333333333333333 77777 5555 444 3 3 777 3 99 6 66 222 3 99 000 6 2
consensus : ACAGGA-GTCT--GAAGT--TTT--T----TTCAA-TAATA--GAGCTCAA-AT---AAAAAAAAAAT-AATACACC---ACCT-AC-T---A---AA-----AAAA-------A--C-A-----C-CAG-G-ATGGCAA-CG---CA----TTTTGG--GGG--T--C-C-AC--CTG--GAAAATTA-TTT-ATT---G-GA------------------T--CGA--CC-G--------------G------------A-----------G-A-----------AT--TC-----------T----G-TAAT-C-GG---AATG-T-CTGGGCTGTTT-ACC-CATGCGG-AAATTTC---CTACCTAT-GCG-ACGA--TT-ACGAC-C--CTCG-TCTGACC-G-----------TTGTTTT-----TTTT-CACTT--CGAT---A-GCT--CATC--CCT-AACT-CCATGAT-G-T-G--AAAACCG-G---AAGTGAGC--T-CT--GCA-GT--G------A-CAC--AGATT-------T-----T-----------------G------AT---TN-----A---------A---T---GAAA------GCN--AAA-TC-AA-------A-CTGT-----TCAA----AT-AAA-TNTGATCAT---G-G-TATAAAT-A----------A---------AA-AAC-AT---AT-T-TCA--T--T----TTTTTTTTT---AC-TTTT--G-TTT-G-AT---A---T-TA--T--AT-CC-AG--------T--T-G-ATTT-G-A--AGTTTTATT-TTGCT----TTC--ATTTAA---CCGA-TGTNN--TTT--AAAATCT--GTG-TC--ACT-GC--AGAG-CTCA--CTTTCCGGTTTT--C-A-CATCATGG-AGTTAGGGA--ATG--AGCT-ATCG-A---AG--T-GAA--------AA-------AA-------C-GGTC-AGA-C-GAG--G-GTCG-TAA-TCG-T-CGG---CATAG--GTAGGAAAT-TTCCGCCATG-G-GT--AA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTC--GC-G--AAAT-TCTC-CCGG--TCGA--TCCAAT-A--AATAAT-T--TTCCAG--GT-G-G--A-CC-TC-CAAAAGTGC---G-TTG-CC-ATC-CTG-------GTTG---GTTTT-----TT----T---A-GT-AGGT-GG-TG--TATTA--T---T-TTT--TTT---AT-TTGAGCTCTAT
Reference ( gi|2 ) : ACAG-A-GTCT-TGAAGC--TTT--T----TTCAA-TAA----GAGCT-AA-ATTTAAAAAAAAAGAT-AGTACACC---ACCT-AC-T---A---AA-----AAAA-------A--C-A-----C-CAG-G-ATGGCAA-AA---CA----TTTTGG--GAG--T--C-C-AC--CTG--GAAAATTA-ATT-ATT---G-GA------------------T--CGA--CC-G--------------G------------A-----------G-------------AT--TC-----------T----G-TAAT-C-GG---AATG-T-TCTGGCTGTTT-ACC-CATGCGG-AAATTTC---CTACCTAT-ACG-AC-A--TT-ACGAC-C--CTCG-TCTGACC-G----------GTTGTTTT-----TTTT-CACTT--CGAT---A-GCT--CATC--CCT-AACT-CCATGAT-G-T-G--AAAACCG-A---AAGTAAGC--T-CT--GCA-GT--G------A-TAC--AGATT-------T-----T-----------------G------AT---TC-----A---------A---T---GAAA------GTC--AAA-TC-AA-------A-CTGT-----TCAA----AT-AAA-TGTGATCGT---G-G-TATAAAT-A----------A---------AA-AAC-AT---AT-T-TCA--T--T----TTTTTTTTTT--AC-TTTT--G-TTT-G-AT---A---T-TA--T--AT-CC-A---------T--T-G-ATTT-G-A--GGTTTTGTT-TTGCTC---TTC--ATTTAA---CAGAACGTTT--TTT--AAAATCT--GTA-TC--ACT-GC--A-AG-CTTA--CTTTTCGGTTTT--C-A-CAACATGG-AGTTTGGGA--ATG--AGCT-ATCG-A---A---T-GAA--------CA-------AA-------C-GGTC-AGA-C-GAG--G-GTCG-TAA-TC--T-CAA---CATAG--GTAGGAAATCTTCCGCCATG-G-GT--AA--CAGCC-CAGACATT---CCGA-TTACAAAATTAATC--GC-G--AAAT-TCTC-CCGG--TCGA--TCCAA--A--AATAAT-T--TTCCAC--GT-G-G--A-CC-TC-CAAAAATGC---G-TTG-CCAATC-CTG-------ATTG---GTTTT-----TT----T---A-GT-AGGT-TG-TG--TACTA--T---T-TTT--TTT---AT-TT-AGCTCTAT
gi|3 : ACAGCA-GTCT--GACG---TTT--T----TTCAA-TAATA--GAGCT-AA-ATT-AAAAAAAATAAT-AATACACC---ACCT-AC-T-------AA-----AAAA-------G--C-A-----C-CAG-G-ATGGCAA-CG---CAG---TTTTGG--AGG--T--CTC-AC--CTG--GAAAATTA-TTT-ATT---G-GA------------------T--CGA--CCGG--------------G------------A-----------GAATTTCGCGAGTAAT--TC-----------T----G-TAAT-C-GG---AATG-T-CTGGGCTGTTT-ACC-CATGCGG-AAATTTC---CTACCTAT-GCA-ACGA--TT-ACGAC-C--CTTG-TCTAACCGG----------GTTTTTTT-----TTCT-CACTT--CGAT---A-GCT--CATC--CCT-AACT-CCATGAT-G-T-G--AAAACCG-G---AAGTGAGC--T-CT--GCA-GT--G------A-TAC--AGATT-------T-----TAAATCACTC--------G------GT---TA-----A---------A---T---GAAA------ACA--AAA-TA-AA-------A-C--C-----TCAA----AC-CAA-C-------T---G-G--ATAAAT-A----------AATCAAAAT-AA-AAA-AT---AT-T-GAAGGT--G----TTTTTTATTC--AT-ATCC--A---T-G-ATCAAA---T-TT--T--AT----A---------T--A-A-AC--------AGTTTGATT-TTGCT----TTC--ATTT-T---TAAA---------TC--AAAATCT--GTG-----ACT-GC--AGAG-CTCA--C-TTCCGGT
gi|4 : tcACAGCA-GTCT-----GCCGTTT--T----TTCAA-TAATA--GAGCT-AA-ATT-AAAAAAAATAAT-AATACAC----ACCT-AC-T---A---AA-----AAG-----------C-A-----C-CAG-G-ATGGCAA-CG---CAG---TTTTGG--AGG--T--CTC-AC--CTG---AAAATTA-TTT-ATT---G-GA------------------T--CGA--CCGG--------------G------------A-----------GAATTTCGCGAGTAAT--TC-----------T----G-TAAT-C-GG---AATG-T-CTGGGCTGTTT-ACC-CATGCGG-AAA-TTC---CTACCTAT-GCA-ACGA--TT-ACGA-----CTTG-TCTAACC-G----------GTT-TTTT-----TTCT-CACTT--CGAT---A-GCT--CATC--CCT-AACT-CCATGAT-G-T-G--AAAACCG-G---AAGTGAGC--T-CT--GCA-GT--G------A-TAC--AGATT-------TAAA--T-----------------C------AC---TC-----G---------G---TTAAGAAA------ACA--AAA-TT-AA-------A---AC-----TCAA----AC-CAA-C-TG--------G-A-TATAAATCA----------A---------AATAAA-AT---AT-T-GAAGGT--G----TTTTTTATTC--AT-ATCC--A---T-G-AT---AAATT-TA--T--A-----A---------TAAC-A-GTTT-G-A---------TT-TTGCT----TTC--ATTT------------TTA--ATC--AAAATCT--GTG-----ACT-GC--AGAG-TCTA--C-TTCCGGT
gi|1 : tcACAGGA-ATCTCTGAA-----TTAAT----TTCAAATAA----TAACTCAA-ATT----AAAATATAT-ATTA-ACCCCAACCTTAC-TTATA---AA-----TAAA-------A--C-A-----C-TAGTG-ATTACTC-AATCGCA----CTATTG--GA---T--CAC-AC--CTGTAGAAAATTA-TTT-ATT---G-GAGCAACTTGTGAGATATTTT--CCA--CT-G--------------A------------A-----------GTA-----------AT--TC----------------G-TAAT-C-GA---AA-G-T-TCTGGTCTTTT-CCT-CAGTCTG-AAA-TTC---CTAACTATGACGAACGA--TT-ACAAA-CATCTCA-CCGAACC-------------------T-----TTTT-CACGT--CAATA--A-GAC--CATCATCCT-AACT-CCA-GTT-G-T-GAAAAAACCG-ACATACTTAAGC--T-CT--GCA-GT--G------ACCAC--AGATT-------T-----T-----------------G------AT---TA-----A---------A---T---GAAA------G-A--AAA-AC-AA-------A-GT-T-----TTAA----A--AAA-TG-AATAGT---G-GATAAAAAT-A----------A---------AT-AA--AT---AC-A-TCA--T--TACAATATATTTATT--ACTTTTT--C-TTT-G-AT---ATATT-TA--T---T-CC-A---------T--T-GCAGTC-GCA------TCGTTAATG-TCAATTTCATATTTAATCTC-GAATATGTAATTTAAAAAATCT---TG-TCAAATT-GCAGA-AG-CTTA--C-TTTCAAGTTT--A-A-CAACATAG-A-T---AGA--GTGAAAGC--ACCG-ATAGG---T-GAA---------A-------AA-------CAAGTC-A-A-T-GAG--ACATTG--AA-GC--TGCGA---CA-AGAAGTTAGAAATGCTC--TCA---G-GTA-AA--CAACCACAGACATT---CCGA-TTACAATATTACTC--GT-G---AAT-TCGT-CCAGCTTCAT--TCCAG--A--AATAATGTAGTTCCAC--TA-G-A--A-CCATC-CAAAACTGCTGTG-TT--CCTATC-CTGCGTGTGTATTT---ATTTTATTTATT----C---A-AT-AGG---G-TG--AA--A--------TTA--TTT---AT-TT-A-CTCTAT
gi|11 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaaccACAGGA-ATCC--GAAG---TTA--T----TTCAA-TAATA--GAGCTCAA-AT---AAAAAAAAAAT-AATACACC----CCT-AC-T---ATAAAA-----AAAA-------A--C-A-----C-CAG-G-AT-GCAACCG---CA----CTTTGG--AGG--TC-C-C-AC--CTG--GAAAATTA-TTTAATT---G-GA------------------T--CAA--CC-G--------------G------------GAGAATTTCAGCG-------------ATAATC-----------T----GTTAAT-C-GG---AATG---TCTGGCTGTTT-TAC-CATGCGGAAAATTTC---CTACCTAT-GCG-ACGA--TTAACAAC-T--CTCA-TCTGACC---------------GTTTT-----TTAT---CTT--CGAT---A-GCT--CATC--CCTAAACT-CCtattgaattagaaacacttcagaat
gi|8 : cACAGGA-GTCT--GCAGT--TGT--T----TCCAG-TAATA--GAGCT-AAGAT---AAACAAAAAAT-AATACACC---ATCT-AC-T--------A-----AAAA-------C--C-A-----T-CAG-A-ATGGGAG-CG---CATTT-TTTTGA--GGT--T--C-C-AT--CTT--GAAAATAA-A------------------------------------A--CG-G--------------G------------A-----------A-------------AA--TT-----------TCGGAG-TAAT-T-TG---AGTG-T-CTGGGCTATTA-ATG-CATGCTG-AAA-TTC---CTACCTA--GCG-AC-
gi|5 : agactttgattcaatgaaagcaaataaaactagttaagtaaaattttatcatgtgtgtgaaaaaaaacacctttaatatttgttacctttgttttgattttatttatcccgttgatttgaagttttattaagcgattgattaaaatcagtgtcgctagagggctcacttttcggttctcaatatcatgatgtgagggatgagctatcatcCAG-AAGTCT--GAAG---TTT--T----TTCAA-TAATA--GAGCT-AA-AT-----AAAAAAAAT-AATACACC---ACCT-ACTT---A---AA-----AAAA-------A--C-A-----C-TAG-G-ATGGCAA-CG---CA----TTTTTG--GAGGCC--C-C-AC--CTG--GAAAATTA-TTT-ATT---G-GA------------------T--CGA--CCGG--------------G------------A-----------GAATTTCGCGAGTAAT--TC-----------T----G-TAAT-C-GG---AATG-T-CTGGGCTGTTT-ACC-TATGCGG-AAATTCC---CTACCTAT-GCG-ACGA--TT-ACGAC-G--CTCG-TCTGACC---------------GTTTT-----TTTTATACTT--CGAT---A-GCT--CATC--CCT-AACT-CCATGAT-G-T-G--AAAACCG-A---AAGTAAGC--T-CT--GCA-GG--G------A-TAC--AGATT-------TAAAAAT-----------------C------AT---TCGGTTGA---------A---T---GAAA------G-C--AAA-AC-AA-------AGC--C-----TCAA----ATCAAA-TG-GATAA---------ATAAATCA----------AAACAAAAGTAA-AAA-AT---AT-T-GAA--G--A----TGTT---------C-TTTA--G-CT----------------A--T--AT-CC-ACGATCAAATT--T-T-ATTT-A-AACAGTTTGATT-TTGCT----TTC--ATTTAAT--CAAAAggt
gi|6 : G-A-ATCT--GAAGT--TAT--T----TACAA-TAATA--GAGCTCAA-AT---AAAAAAAAAAT-A-TACACC---CACT-A--T---A---AA-----AAAA-------A--CCA-----C-CAG-GGATGGCAA-CG---CAC---TTTTGG--AGG--TTCC-C-AC--CTG--GAAAATTA-TTA-ATT---GAGA-----------------------A--CT-G--------------GGAGAATTTCACGA-----------GTA-----------AT--TC-----------T----G-TAATTC-GGGAAAATG-T-CTGGGCTGTTTTACAACATGCGGGAAATTTC---CTACCTAT-TCG-AC-GATTT-ACAAC-T--CTCAACCTGAC----------------GTTTT-----TT---CACTT--CGAT---AAGCT-------------A-T-CCGTGTT-G-TTG--AAAAC-G-A---AAGTAAGC--T-CT--GCA-GT--G------A-CAC--AGATT-------T-----T-----------------AAAAATCAT---TCGGTTAA---------A---T---GAAA------AGC--AAA-AC-AA-------A-ATCTCAAAATCAACTGGAT-AAA-TAT-ATCAA---A-A-CAAAAGT-A----------A---------AA-AAA-ATGAGAG-T-TTT--T--T----ATTTTTATCC--AC-TATCAAA-TTT-T-AT-------T-TA--A--AC-CA-A---------T--T-G-A----------------TT-TTGCT----TTC--ATTTAA---tttaa
gi|12 : aagG-A-ATCT--GAAG---TTA--T----TTCAA-TGATATAGAGCTCAA-AT-----AAAAAAAAT-AATACACC---CCCT-AC-T---ATA-AA-----AAAA-------A--C-AAACCAC-CAG-G-ATGGTA------------------G--AGG--T--C-CCAC--CTG--GAAAATTA-TTT-ACT---G-GA------------------T--CGA--CC-G--------------GC-----------A-----------GAATTTCGCGAGTAAT--TC-----------T----G-TAAT-CGGG---GGTGCT-TTTGACT-TTC-ACG-CTTTTGC-AAATTTtcaaat
gi|1 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaa-TGAAGT--GTT--TCTAATTCAA-TAATA--GAG-T-AA-AT-------AAATAAT---TTCACC-----CT-AT-T---G---AATAAATAAAATAAATACA--C-A-----CGCAG-G-ATAGGAA-CA---CAGCAGTTTTGGATGGT--T--C-T-AG---TG--GAA--CTACATT-ATTTCTG-GA------------------A--TGAAGCT-G--------------G------------ACG---------A-------------AT--TCACGAGTAATATT----G-TAAT-C-GG---AATG-TCTGTGGTTGTTT-ACC---TGAGA-GCATTTCTAACTTCTTGT--CG--C-AGCTT--CAATGT--CTCA-T-TGAC--------------TTGTTTT-----T----CACCTATCGGT-----GCTTTCA-C--TCT-A--T-CTATGTT-G-T-T--AAACTTG-A---AAGTAAGC--TTCT--GCA-ATTTG------A-CA---AGATT-------T-----TTTAAATTACATATTCGAG------AT---TA-----A---------A---TAT-GAAA------TTG--ACA-TT-AACGATGCGA-CTGCAA---TGGA----AT-AAA-TAT-ATCAA---A-G-AAAAAGT-A----------A---------TA-AAT-AT---AT-TGTAA--TGAT----GTATTTATTT--AT-TTTT--A-TCC-A-CT---A---T-T----------C-A---------T--T-T--TTT-A-A--AACTTTGTT-TTTCT----TTC--ATTTAA----------------TC--AAAATCT--GTGGTC--ACT-GC--AGAG-CTTAAGTATGTCGGTTTTTTC-A-CAAC-TGG-AGTT-AGGATGATG--GTCTTATTG-AC--G---T-GAA---------A-------AA---------GGTT-CGG-T-GAGATG-TTTG-TAA-TCGTT-CGT---CATAG--TTAGGAA--TTTCAGAC-TG-A-GG--AA--AAGAC-CAGAACTT---TCGA-TTAC-GAATTACTTCAGT-GGAAAATATCTCACAAG--TTGC--TCCAAT-A--AATAAT-T--TTCTACAGGT-GTG--A----TC-CAATAGTGC---GATTGAGTAATCACTA-------GT-----GTTTTA----TT----TATAA-GTAAGGT-TG-GGGTTAATA--TA--T-ATT--TTA---AT-TT-ct
gi|19 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaaccacaggaatctctgaattaatttcaaataataactcAGT--TTA--T----TTCAA-TAATA--GAGCC------TCAAATAAAAAAATTAATACACC---CCCT-AC-T---AT--AA-----AAAA-------A--gaat
gi|21 : acaggaatcg--T----TTCAA-TAATA--GAGCTCAA-AT--AAAAAAAAAGAT-AATACACA---CCCT-AC-
gi|7 : AA-TA-----GAGCTTAG-AT----AAAGAAAAAT-TATGCACC---ACCT-GC-T---A---AA-----AAA-----------C-A-----T-CAG-A-AAGGCAA-CG---CAC---TTTTGG--AGG--T--C-C--CTTCTT--GAAAATCA-ACC-G-----G-GAGAATT-------------T--CG---CT-A--------------G------------T-----------A-------------AT--TT-----------T----G-C-------G---AGTG-T-CTGGGCTGTTT-ATG-CATGCTG-AAATTTC---CTACCTAT-GCA-ATTA--TT-ACGAC-C--CTT--TCTGGCC-G-----------TT-TTTT-----TTTT-CACTA--CGAT---A-GCT--CACC--CCT-AACT-TCATGAT-A-T-G--AGAACCG-G---AATTGAAC--C-CT--CTA-GT--G------A-TAA--TTATT-------T-----T-----------------A------AA---TC-----ACTCGGTTATA---T---GAAA------G-C--AAA-TTAAA-------A-C--T-----TCAA----AT-CAA-CGGGATAA---------ATAAATCAAAACAAAGGTA---------AA-AACAAT---AT-T-AGAGGT--G----TTTTTTATTCAAAC-CCAT--G-ATC-A-A----A---T-TT--T--AC--------------T--T-A-ATT-------AGCTTTATT-TTGCT----TTC--ATTGAA---
gi|9 : cactgaccttgaAATAGAT-AATACATC----CCT-AC-T---A---CA-----AATA-------CTCC-A-----C-CGG-C-ATGGCAA-CG---CA----TTTT---------T--T-T--C--CTG--CAAAATTA-TGT-ATT---G-AA------------------TTTCG---CT-A--------------G------------A-----------G-------------AT--TT-----------T----G-AAAT-A-GG---ATTG-T-TTGGGCTGATT-ATC-CACGCGG-AAATTTC---CTACCTAT-GCG-ACGA--TT-ACAAC-C--CTTT-TCTGGAC----------------TTTT-----TTTT-CTCTT--CGAT---A-GTG--TATC--CCG-AACT-CCATGAT-G-T-G--AAAACCG-G---AAGTGAGA--T-TT--GCA-CT--G------C-TACTAAGATTAAACCAAT-----C-----------------G------AT---TA-----A---------A---G---GAAA------G-CAGAAA-TG-AA-----------GT-----TCAA----AT-CAA-C-------T---G-G--ATAAAT-A----------A---------Aactgca
gi|13 : AAA-------A--C-A-----C-CAG-G-ATGGCAA-CG---CA----TTTTTG--GAGGTC--C-C-AT--CTA--GAAAATTA-TTT-ATT---G-GA------------------T--CAA--CC-G--------------GGATAATTTCGCGA-----------GTA-----------AT--TC-----------T----G-TAAT-C-GG---AATA-T-CTGGGCTGTTT-ACC-CATGCGG-AAATTTT---CTACCTTT-GCG-ACGA--TT-AGGAC-A--CTTG-TTTGACC-G----------------TT-----TTTT-CACTT--CGAT---A-GCT--CATC--CCT-AACT-TCATGAT-G-T-G--AAAACCG-G---AAGTGACC--T-CT--GTA-G
gi|17 : -----C-CAG-G-ATGGCAA-CG---CA----TTTTTC--GAGGTC--C-C-AC--CTG--GAAAATTA-TGT-ATT---T-GA------------------T--CGA--CC-GGGTGAATGTCGCGAG------------A-----------A-------------AT--TC-----------T----G-TAAT-C-GG---AGTG-T-CTGGGCTATT
gi|10 : cc-TAAT-C-GG---AATG-T-TTGGGCTGTCTCACCTCATGCGG-AAATTCC---TTACCTGT-GCG-AC-A--TT-ACGAT-C--CTAATTCTGGCC-GTTGTTTTTCTGTT-TTTT-----TTTT-CATTT--CGCT---A-GCT--CAT---CCG-AACTCCCATGTT-G-T-C--GAAACCG-----AAGTCAGCCTT-CC--GCGCGT--GCGAGGAA-TA-----ATTTAATCACT-----C-----------------G------ATACATG-----A---------A---T---GCAACAATTTATC--AAAGTC-AG-------A-TGGA-----TAAA----AA-AAA-GGT--TCATTTAG-A-TATGAAT-A----------A---------AA-AA------------TCA--A--T----TTTTTTTTTatt
gi|14 : ACA-G----------GTCGTTTTCCAGCTTTT-TACCA--CAGTTGCG-GCT--CATC--CTG-GACT-CCATGCTAG-T-----ACACCA-G---AAGT---C--T-CTCCGAA-GT--GA-----A-TAC--ctt
gi|8 : gggacgggaattcctaaaaatattcctgggtttggctgtacgatttagcgactatttcaataaccgcggtatttcagctgtttattaggtatccaatctctgtgatgattGAT---A-GCT--CATC--CCT-CACA-TCATGAT-ATT-G--AGAACCGAA---AAGTGAGC--C-CT--CTA-GC--G------A-CAC--TGATT-------T-----T-----------------A------A----TC-----A---------A---T------C------GCT--TAA-TA-AA-------A-C--T-----TCAA----AT-CAA-CG----------G-G--ATAAAT-A----------A---------AA-tggagttcaa
gi|3 : agactttgattcaatgaaagcaaataaaactagttaagtaaaattttatcatgtgtgtgaaaaaaaacacctttaatatttgttacctttgttttgaACCG-G---AAGTGAGC--T-CT--GCA-GT-----------CAC--AGATT-------T-----T-----------------G------AT---TT-----A---------AAAAT---GAAA------GCA--AAA-TC-AA-------A-CTGT-----TTAT----AT-AAAATTTGATCAT---G-GATATGAAT-A----------A---------AA-AAC-AC----C-T-TCA--A--T----ATTTTTT-----A--TTTT--G-ATT----T---A---T-T---T--AT-CC-AG--------T--T-G-GTTT-G-A--GGTTTTATT-TTGTT----TTC--ATTTAA---CCGA--GTGA--TTT--AAAATCT--GTA-TC--ACT-GC--AGAG-CTCA--CTTC-CGGTTTT--C-A-CATCATGG-AGTTAGGGA---TG--AGCT-ATCG-A---AG--T-GAG--------AA-------AAAAAAACCC-GGTT-AGA-C-AAG--G-GTCG-TAA-TC--G-TTG---CATAG--GTAGGAAAT-TTCCGC-ATG-G-GT--AAA-CAGCC-CAGACATT---CCGA-TTACAGAATTACTC--GC-G--AAAT-TCTC-CCGG--TCGA--TCCAAT-A--AATAAT-T--TTCCAG--GT-GAG--A-CC-TC-CAAAACTGC---G-TTG-CC-ATC-CTG-------GT-----GCTTT-----TT----T---A-GT-AGGT-GG-TG--TATTA--T---TATTT--TTTTTAAT-TT-AGCTCTATatcgtcgctaggtaggaatttcagcatgcattaatagcccagacactcaaattactccgaaattttcccgttttattttcaagatggaacctcaaaaaaatgcgctcccattctgatggtttttagtagatggtgtattattttttgtttatcttagctctattactggaaacaactgcagactcctgtggt
gi|4 : tcacagcagtctgacgttttttcaataACCG-G---AAGTAGAC--T-CT--GCA-GT-----------CAC--AGATT-------T-----T-----------------G------AT---TA-----A---------AAA-T---GAAA------GCA--AAA-TC-AA-------A-CTGT-----TATT----AT-AAA-TTT-ATCAT---G-GATATGAAT-A----------A---------AA-AAC-AC----C-T-TCA--A--T----ATTTTAT----------------TTT-G-AT-------T-TA--T--AT-CC-AG--------T--T-G-GTTT-G-A--GTTTTAATT-TTG-TT---TTC----TTAA---CCGAGTGATT--T-----AAATCT--GTA-TC--ACT-GC--AGAG-CTCA--C-TTCCGGTTTT--C-A-CATCATGG-AGTTAGGG---ATG--AGCT-ATCG-A---AG--T-GAG--------AA-------AAAAAAC--C-GGTT-AGA-C-AA-----GTCG-TAA-TC--G-TTG---CATAG--GTAGGAA--TTTCCG-CATG-G-GTA-AA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTC--GC-G--AAAT-TCTC-CCGG--TCGA--TCCAAT-A--AATAAT-T--TT-CAG--GT-GAG--A-CC-TC-CAAAACTGC---G-TTG-CC-ATC-CTG-------G-TG-----CTT-----TT----T---A-GT-AGGTGTG-TAT-TATTA--T---T-TTT--TTTA--AT-TT-AGCTCTAT
gi|7 : tcacagcagtctgccgttttttcaataAC--TGACC-------T-----T-----------------G------AT---TC-----A---------A---T---GAAA------GCA--AAA-TA-AA-------G-CTAA-----TTAA----GT-AAAATTTGATCAT---G-GGTTTGAAT-A----------A---------AA-AAC-AC---CT-C-TAA--T--A----TTGTTTTT----AC-CTTT--G-TTTTG-AT-------T-TA--TTTAT-CCCG---------T--T-G-ATTT-G-A--AGTTTTAAT-TTGCT----TTC--ATATAA---CCGA--GTGA--TTT--AAAATAA--TTA-TC--ACT-AG--A-GG-GTTC--AATTCCGGTTCT--C-A-TATCATGA-AGTTAGGGG---TG--AGCT-ATCGTA---G---T-GAA--------AA-------AAAAAA---C-GGCC-AGA---AAG--G-GTCG-TAA-T------AATTGCATAG--GTAGGAAAT-TTCAGC-ATG-C-AT--AAA-CAGCC-CAGACACT---C------GCAAAATTACTA--GC-G--AAAT-TCTC-CCGG--TTGATTTTCAA--G--AA----------------G--G-G--A-CC-TC-CAAAAGTGC---G-TTG-CC-TTT-CTG-------A-TG-----TTT-----TT----T---A-GC-AGGT-GG-TG--CATAA--T---T-TTTC-TTT---AT-CTAAGCTCTAT
gi|5 : c--AAATT-------T-----T-----------------G------AT---TA-----A---------A---T---GAAA------GCA--AAA-TC-AA-------A-CTGT-----TTAA----AT-AAAATTTGATCGT---G-GATATAGCT-A----------A---------AG-AAC-AT----C-T-TCA--A--T----ATTTTTT-----AC-TTTT--G-TTTTG-AT-------T-TA--TTTAT-CC-A---------T--TTG-ATTT-G-A--GGCTTTGTT-TTGCT----TTC--ATTCAA---CCGAATGATT--TTT--AAA-TCT--GTA-TC--CCT-GC--AGAG-CTTA--CTTT-CGGTTTT--C-A-CATCATGG-AGTTAGGGA---TG--AGCT-ATCG-A---AGTAT-AAA--------AA-------AAA------C-GGTC-AGA-C-GAG--C-GTCG-TAA-TCG-T-CG----CATAG--GTAGGGAAT-TTCCGC-ATA-G-GT--AAA-CAGCC-CAGACATT---CCGA-TTACAGAATTACTC--GC-G--AAAT-TCTC-CCGG--TCGA--TCCAAT-A--AATAAT-T--TTCCAG--GT-G-G--GGCC-TC-CAAAAATGC---G-TTG-CCA-TC-CT--------AGTG---TTTTT-----TT----T---AAGT-AGGT-GG-TG--TATTA--T---T-TTT--TTT---AT-TT-AGCTCTATtactgca
gi|8 : cagaagtctgaagttttttcaata--AGACT-------T-----T-----------------G------AT---TC-----A---------A---T---GAAA------G-C--AAA-TA-AA-------A-CTAG-----TTAA----GTAAAA-TTTTATCAT---GTG-TGTGAA--A----------A---------AA-AAC-AC---CT-T-TAA------------TATTTGTT--AC-CTTT--GTTTT-G-AT---T---T-TATTT--ATCCC-G---------T--T-G-ATTT-G-A--AGTTTTATT-AAGC-------G--ATT--------GA---------TT--AAAATCA--GTG-TC--GCTAGA--G-GG-CTCA--CTTTTCGGTTCT--CAA-TATCATGA-TGTGAGGG---ATG--AGCT-ATC---------------------------------A-------T-CGTC---G-C-TA---G-GTAG-GAA-TT--T-CAG---CATG-------------------CAT-----T--AA--TAGCC-CAGACACT---C---------AAATTACTC---C-G--AAAT-TTTC-CCGT--T-----------------TTAT-T--TTCAAG--AT-G-GA-A-CC-TCAAAAAAATGC---G-CT--CCCATT-CTG-------A-TG---G--TT-----TT----T---A-GT-AGAT-GG-TG--TATTA--T---T-TTTTGTTT---ATCTT-AGCTCTATaa
gi|6 : T-------T-----T-----------------G------AT---TA-----A---------A---T---GAAA------GCA--AAA-TC-AA-------T-TGGT-----TTAA----AT-AAAATTTGATAGT---G-GATAAAAAT-A----------A---------AA-AAC-------T-C-TCA--T--T----TTTTTT------AC-TTTT--G-TTTTG-AT---A---TATT--T--AT-CC-AG--------T--T-G-ATTTTG-A--GATTTTGTT-TTGCTT---TTC--ATTTAA---CCGAATGATT--TTT--AAAATCT--GTG-TC--ACT-GC--AGAG-CTTA--CTTTC--GTTTT--C-AACAACACGG-A-----------T---AGCTTATCG-A---AG--T-GAA--------AA-------AA-------C-G-TC-AGG-TTGAG--A-GTTG-TAAATCG-T-CGA----ATAG--GTAGGAAATTTCCCGC-ATG-TTGT--AAAACAGCC-CAGACATTTTCCCGAATTACAGAATTACTC--GT-G--AAAT-TCTC-CCAG--T-----TCTCA--ATTAATAAT-T--TTCCAG--GT-G-GGAA-CC-TC-CAAAAGTGC---G-TTG-CCATCC-CTG-------G-TG---GTTTT-----TTTTA-T---A-GT-GGG--TG-TA--TATT---T---T-TTT--TTT---AT-TTGAGCTCTATtactggaaacaactgcagactcctgtggt
gi|15 : aaggaatctgaagttatttacaataGATCAT---G-GATATGAAT-A----------A---------AA-AAA-AC---ATCT-TCA--A--T----ATTTTTT-----AC-TTTT--G-TTT-TCAT-------T-TA--TTTAT-CC-AG--------T--T-G-ATTT-G-A--GGTTTTATT-TTGCT----TTC--ATTTAA---CCGA--GTGA--TTT--AAAATCT--t
gi|16 : ATAAAT-G----------A---------TA-AAC-AT---AT-T-CCA--T--A----TTTCTTTT-----C-TTTT--A-TT-------------------T--AT-CC-AG--------T--G-G-ATTT-G-C--AATTTTATT-TTGCT----TTC--ATTTAA---CTGA--GTGA--TTT--AGAATtttcatataaa
gi|9 : taaaaacacacccctactaaT---A---T-T---T--AT-CC-AG--------T--T-G-ATTT-G-A--ACTTCATTT-CTGCT----TTC--CTTTAA---TCGATTGGTT--T------AATCTTAGTA-GC--AGT-GC--A-AATCTCA--CTTC-CGGTTTT--C-A-CATCATGG-AGTTCGGGA---TA--CACT-ATCG-A---A---GAGAA--------AA-------AA-------A-AGTCCAGA-A-AAG--G-GTTG-TAA-TCG-T-CG----CATAG--GTAGGAAAT-TTCCGC-GTG-G-AT--AAT-CAGCC-CAAACAAT---CCTA-TTTCAAAATCTCTA--GC-G--AAAT-TC-----------AA--TACA--------TAAT-T--TTGCA------G-G--A-A------AAAAATGC---G-TTG-CC-ATG-CCG-------GTGGA--GTATT-----TG----T---A-GT-AGG---GATG--TATTA--T---C-TAT--Ttggtcttattt
gi|13 : CT-AC--AGAG-GTCA--CTTC-CGGTTTT--C-A-CATCATGA-AGTTAGGGA---TG--AGCT-ATCG-A---AG--T-GAA--------AA-------AA-------C-GGTC-AAA-C-AAG--T-GTCC-TAA-TCG-T-C-G---CAAAG--GTAGAAAAT-TTCCG-CATG-G-GTA-AA--CAGCC-CAGATATT---CCGA-TTACAGAATTACTC--GC-G--AAAT-TATC-CCGG--TTGA--TCCAAT-A--AATAAT-T--TTCTAG--ATGG-G--A-CC-TC-CAAAAATGC---G-TTG-CC-ATC-CTG-------GT-----GTTTT-----aa
gi|10 : --A-GG-CTGA--CTT--CGGTTTC--G-A-CAACATGGGAGTTCGG----ATG--AGCT-AGCG-A---AA--T-GAAAAAAAAAACAGAAAAACAA-------C-GGCC-AGAAT-TAG--G-ATCG-TAA-TG--T-CG----CACAG--GTAAGGAAT-TTCCGC-ATGAG-GT--GAGACAGCC-CAAACATT---CCGA-TTA
gi|11 : GG-AGTTTAGGG--ATG--AGCT-ATCG-A---AGA-T-AAA---------A-------AA-------C-GGTC-AGA-T-GAG--A-GTTGTTAA-TCG-T-C-G---CATAG--GTAGGAAATTTTCCG-CAT--G-GTAAAA--CAG-C-CAGACATT---CCGA-TTAACAGATT-ATC--GCTG--AAAT-TCTC-CCGG--TTGA--TCCAATTA--AATAAT-T--TTCCAG--GTGG-G--A-CC-TC-C-AAAGTGCG--G-TTG-C--ATC-CTG-------GT-----GTTTT-----TTTTTAT---A-GT-AGG--GG-TG--TATTATTT---T-TTT--TTT---AT-TTGAGCTCTATtccgcgcgtgcgaggaataatttaatcactcgatacatgaatgcaacaatttatcaaagtcagatggataaaaaaaaggttcatttagatatgaataaaaaatcaattttttttttctt
gi|17 : cacaggaatccgaagttatttcaataT--AA--TAGCC-CAGACACT---CCGA-TTACAGAATTTCTC--GC-G--ACAT-TCAC-CCGG--TCGA--TCAAAT-A--CATAAT-T--TTCCAG--GTGG-G--A-CC-TC-GAAAAATGC---G-TTG-CC-ATC-CTG-------
gi|12 : ccc---CCGA-TTACAGAATTACTC--GC-G--AAAT-TCTG-CCGG--TCGA--TCCAGT-A--AATAAT-T--TTCCAG--GTGG-G--A-CC-TC----------------TA-CC-ATC-CTG-------GTGGTTTGTTTT-----TTTTA-T---A-GT-AGGG-GG-TG--TATTA--T---T-TTT--TTT---AT-TTGAGCTCTATtt
gi|21 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaaaatttgcaaaagcgtgaaagtcaaaagcaccc-GT-AGGG-TG-TG--TATTA--TCTTT-TTT--TTT---AT-TTGAGCTCTATatcattgaaataacttcagattcct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GGGGGGGGGGTCCTGAAAAATTACGTGTTGGTGTAGCTGGACAATTTAGTGATGATTTCAACACTCGGGGTGTTTCGGCTCTTTATT
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 222 111 11 111 33333 1 11 2 111 1 1 1 11 1111 777777777777777777 11 1 44444444444444444 11111 1111 22222 3333333333 11 11 111 2222 111 1 111 1111111 111 2 1111111 2 11111 222222 444444444444444 1111111 222222 22 1111 2222222 22 2 2 11 11111 4444444444 11111 111 111 1
lowQualScore : 222 77 1 6 6 2 111 55 666 66666 0 8 33 0 777 0 99 0 0 33 3333 333333333333333333 4 00 0 3 55555555555555555 6 6 1 11111 2 6 7 6 6 6 8 8 7777 8 3 22222 5555555555 6 11 8 999 11 88 8 3 111 3333 1 111 0 99 99 6 555 66 4444444 1 333 5 4 9999 0 2 3 2 111 3333333 777 4 8 3 55 99999 9999 888888 000000000000000 55 1 3 1111111 3 3 3 3 55 55 222222 22 55 55 0 66 4 0 5 2 8 99 55 4 66 7777 5555555 4 66 66 4 00 66 8 2 4 0 33 4 666 3 55 2 3 2 3 55 77777 7 55 3 6 666 3 3 3 0000000000 00000 555 66 444 666 4 7
lowQualScore : ... .. . . . . ... .. ... ..... . . .. . ... . .. . . .. .... .................. . .. . . ................. . . . ..... . . . . . . . . .... . . ..... .......... . .. . ... .. .. . . ... .... . ... . .. .. . ... .. ....... . ... . . .... . . . . ... ....... ... . . . .. ..... .... ...... ............... .. . . ....... . . . . .. .. ...... .. .. .. . .. . . . . . .. .. . .. .... ....... . .. .. . .. .. . . . . .. . ... . .. . . . . .. ..... . .. . . ... . . . .......... ..... ... .. ... ... . .
lowQualScore : 888 66 7 7 7 5 777 00 333 88888 0 8 88 0 555 0 00 0 0 88 8888 888888888888888888 2 22 0 2 22222222222222222 7 7 0 77777 5 7 3 7 7 7 0 0 4444 0 8 44444 0000000000 0 00 0 444 00 66 0 2 000 2222 0 777 5 22 22 7 444 11 4444444 0 999 3 4 4444 1 0 4 2 000 0000000 000 0 0 6 00 88888 7777 777777 777777777777777 00 4 6 8888888 6 6 6 6 00 00 999999 00 00 55 7 11 0 8 7 5 0 99 55 0 11 2222 6666666 4 33 33 4 44 11 9 3 4 0 55 0 444 6 00 2 6 1 6 00 88888 3 00 6 4 444 6 6 6 3333333333 00000 666 11 666 777 4 0
consensus : ACAGGAATCT--GAAGTTNTTTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACCA--CCTACT---A-AAAAAAACACCAG-GATGGC--AACCGCA---CT-TTGGGGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCAACC-GGAG-AAT-----------TCC---G-TAATCGGAATGTCTGGGCTGTTT-ACC-CATGCGG-AAATTTCCTACCTATG-CG-ACGATT-AC-GACC--CTCGT-CTGACC-GTTGTTTTT----------TTTCAC--TT-CGAT-AGCTCATC--CCT-AACT-CCATGTT-GTG--AAAACCGG---AAGTAAGC--TCT--GCA-GTGA-CACAGAT--TTTGAT-------TAAA---TGAAAGCAA-A----ATCAAACTGTTTAAATAAAATTTGA-------TCGT---G-GATATGAATAAA-AA--ACAC--T-TTCA-NTNTTTTTTT-AC-TTTTGTTTTG-AT--A---T-T-T--ATCCAGTTGATTT-GAGGT-------TTT-ATTT-TGCT-TT-C--ATTTAA--CCG---A-TGTGATTT--AAAATCT--GTATC--ACTGCAG-AGCTCACTTTCCGGTTTTCA-CATCATGGAGTTAGGGA-TG--AGCT-ATCG--AAGTG----AAAAAA-------CGGTC-AGAC-GAGG-GTCGTAA-TCGTCGACATAG--GTAGGAAAT-TTCCG-CATGG-GTAAA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAG--GTGG-G--ACC-TCCAAAAATGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG---TATTATTTTT-TTTATTT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAGTCT--GAAGTTTTTTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACCA--CCTACT---A-AAAAAAACACCAG-GATGGC--AA-CGCA---TT-TTGGGGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAG-AAT-----------TCT---G-TAATCGGAATGTCTGGGCTGTTT-ACC-CATGCGG-AAATTTCCTACCTATG-CG-ACGATT-AC-GACC--CTCGT-CTGACC-GTTGTTTTT----------TTTCAC--TT-CGAT-AGCTCATC--CCT-AACT-CCATGAT-GTG--AAAACCGG---AAGTGAGC--TCT--GCA-GTGA-CACAGAT--TTTGAT-------TNAA---TGAAAGCNA-A----ATCAAACTGTTCAAATAAA-TNTGA-------TCAT---G-G-TATAAATAAA-AA--ACAT-AT-TTCA-TTTTTTTTTTTAC-TTTTGTTT-G-AT--A---T-TAT--ATCCAGTTGATTT-GAAGT-------TTT-ATTT-TGCT-TT-C--ATTTAA--CCG---A-TGTNNTTT--AAAATCT--GTGTC--ACTGCAG-AGCTCACTTTCCGGTTTTCA-CATCATGGAGTTAGGGAATG--AGCT-ATCG--AAGTG----AAAAAA-------CGGTC-AGAC-GAGG-GTCGTAA-TCGTCGGCATAG--GTAGGAAAT-TTCCGCCATGG-GT-AA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAG--GT-G-G--ACC-TCCAAAAGTGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG---TATTATTTTT-TTTATTTGAGCTCTAT
gi|1 : ACAGGAATCTCTGAA-TTAATTTCAAATAATAA--C-TCAAAT---TAAAATATATATTA-ACCCCAACCTTACTTATA-AATAAAACACTAGTGATTACTCAATCGCA---CTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTTGTGAGATATTTTCCACT-GAAGTAAT-----------TC----G-TAATCGAAAGTTCTGGTCT-TTT-CCT-CAGTCTG-AAA-TTCCTAACTATGACGAACGATT-AC-AAACATCTCAC-CGAACC--------TT----------TTTCAC--GT-CAATAAGACCATCATCCT-AACT-CCA-GTT-GTGAAAAAACCGACATACTTAAGC--TCT--GCA-GTGACCACAGAT--TTTGAT-------TAAA---TGAAAGAAA-A----A-CAAAGT-TTTAAA-AAA-TG-AA-------TAGT---G-GATAAAAATAAATAAATACATCAT-TACA-ATATATTTATTACTTTTTCTTT-G-AT--ATATT-TAT---TCCA------TT-GCAGTCGCATCGTTA-ATGT-CAAT-TT-CATATTTAATCTCGAATA-TGTAATTTAAAAAATCT---TGTCAAATTGCAGAAGCTTACTTTCAAG-TTTAA-CAACATAGA--TAGAG--TGAAAGC--ACCGATAGGTG----AAAAAC-------AAGTC-A-AT-GAGACATTGAAG-CTG-CGACA-AGAAGTTAGAAATGCTC--TCA--G-GTAAA--CAACCACAGACATT---CCGA-TTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCAC--TA-G-A--ACCATCCAAAACTGCTGTGTTCCT-AT-CCTGCGTGTGTATTTATTTTATTTATT---C--AATAG--G-GTGA--AATTA------TTTATTT--ACTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc-TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-AC-GATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCAT--TT-CGCT-AGCTCAT---CCG-AACTCCCATGTT-GTC--GAAACC-G---AAGTCAGCCTTCC--GCGCGTGC-GAGGAATAATTTAATCACTCGATACA---TGAATGCAACAATTTATCAAA--G-TCAGATGGA-TAAAAAAAAGGTTCATTTAG-A-TATGAATAAA-AA--A--------TCA-ATTTTTTTTTT-C-TTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATCC--GAAGTTATTT-CAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC---CCTACTATAA-AAAAAAACACCAG-GAT-GC--AACCGCA---CT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGA------------------TCAACCGGGAG-AATTTCAGCGATAATCT---GTTAATCGGAATGTCT-GGCTGTTT-TAC-CATGCGGAAAATTTCCTACCTATG-CG-ACGATTAAC-AACT--CTCAT-CTGACC-GTT-TTTTA----------T----C--TT-CGAT-AGCTCATC--CCTAAACT-CC
gi|12 : c---CCGA-TTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAG--GTGG-G--ACC-TC--------------TACC-AT-CCTG-GT-GGTTT--GTTTT-----TTTTAT--AGTAGGGG-GTG---TATTATTTTT-TTTATTTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaaaatttgcaaaagcgtgaaagtcaaaagcacccCTACAG-AGGTCACTT-CCGGTTTTCA-CATCATGAAGTTAGGGA-TG--AGCT-ATCG--AAGTG----AAAAAA-------CGGTC-AAAC-AAGT-GTCCTAA-TCGTCG-CAAAG--GTAGAAAAT-TTCCGC-ATGG-GT-AAA-CAGCC-CAGATATT---CCGA-TTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAG--ATGG-G--ACC-TCCAAAAATGC---GTTGCC-AT-CCTG-GT--------GTTTT-----atcattgaaataacttcagattcct
gi|14 : T-----------TCA---A-TAACCGCGGTATTTCAGCTGTTT-ATT---------AGGTATCCAATCTCTG-TG-ATGATT-ACAGG-----TCGT-TTT-CC-A--GCTTTT----------TACCACAGTTGCG----GCTCATC--CTG-GACT-CCATGCTAGT----ACACCAG---AAGT---C--TCTCCGAA-GTGA-
gi|15 : gggacgggaattcctaaaaatattcctgggtttggctgtacgatttagcgactatGA-------TCAT---G-GATATGAATAAA-AA--AAAC-ATCTTCA-ATATTTTTT--AC-TTTTGTTT-TCATTTA---T-T-T--ATCCAGTTGATTT-GAGGT-------TTT-ATTT-TGCT-TT-C--ATTTAA--CCG---A--GTGATTT--AAAATCT--atactggagttcaa
gi|16 : ATAAATGAT-AA--ACAT-AT-TCCA-TATTTCTTTT--C-TTTTATTT------------------ATCCAGTGGATTT-GCAAT-------TTT-ATTT-TGCT-TT-C--ATTTAA--CTG---A--GTGATTT--AGAATtttcatataaa
gi|17 : taaaaacacacccctactaaT-AA--TAGCC-CAGACACT---CCGA-TTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAG--GTGG-G--ACC-TCGAAAAATGC---GTTGCC-AT-CCTG-Gtggtcttattt
gi|19 : ccACAGGAATC----GAGTTTATTTCAA-TAATAGAGCCTCAAAT---AAAAAAAT---TAATACACCC--CCTACT---ATAAAAAAAtt
gi|2 : ACAG-AGTCTT-GAAGCTTTTTTCAA-TAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACCA--CCTACT---A-AAAAAAACACCAG-GATGGC--AA-AACA---TT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGA------------------TCGACC-GGAG-A-T-----------TCT---G-TAATCGGAATGTTCTGGCTGTTT-ACC-CATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-AC-GACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCAC--TT-CGAT-AGCTCATC--CCT-AACT-CCATGAT-GTG--AAAACCGA---AAGTAAGC--TCT--GCA-GTGA-TACAGAT--TTTGAT-------TCAA---TGAAAGTCA-A----ATCAAACTGTTCAAATAAA-TGTGA-------TCGT---G-G-TATAAATAAA-AA--ACAT-AT-TTCATTTTTTTTTTTTAC-TTTTGTTT-G-AT--A---T-TAT--ATCCA-TTGATTT-GAGGT-------TTT-GTTT-TGCTCTT-C--ATTTAA--CAGA--A-CGTTTTTT--AAAATCT--GTATC--ACTGCA--AGCTTACTTTTCGGTTTTCA-CAACATGGAGTTTGGGAATG--AGCT-ATCG--AA-TG----AACAAA-------CGGTC-AGAC-GAGG-GTCGTAA-TC-TCAACATAG--GTAGGAAATCTTCCGCCATGG-GT-AA--CAGCC-CAGACATT---CCGA-TTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCAC--GT-G-G--ACC-TCCAAAAATGC---GTTGCCAAT-CCTG-AT-TG-----GTTTT-----TT---T--AGTAGGTT-GTG---TACTATTTTT-TTTATTT-AGCTCTAT
gi|21 : TTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACAC--CCTAC
gi|3 : ACCGG---AAGTGAGC--TCT--GCA-GT---CACAGAT--TTTGAT-------TTAAAAATGAAAGCAA-A----ATCAAACTGTTTATATAAAATTTGA-------TCAT---G-GATATGAATAAA-AA--ACAC--C-TTCA-ATATTTTTT--A--TTTTGATT----T--A---T-T-T--ATCCAGTTGGTTT-GAGGT-------TTT-ATTT-TGTT-TT-C--ATTTAA--CCG---A--GTGATTT--AAAATCT--GTATC--ACTGCAG-AGCTCACTT-CCGGTTTTCA-CATCATGGAGTTAGGGA-TG--AGCT-ATCG--AAGTG----AGAAAAAAAAACCCGGTT-AGAC-AAGG-GTCGTAA-TCGTTG-CATAG--GTAGGAAAT-TTCCG-CATGG-GTAAA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAG--GT-GAG--ACC-TCCAAAACTGC---GTTGCC-AT-CCTG-GT--------GCTTT-----TT---T--AGTAGGTG-GTGTATTATTATTTTT-TTTAATTTAGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCT--GCA-GT---CACAGAT--TTTGAT-------TAAAAA-TGAAAGCAA-A----ATCAAACTGTTATTATAAA-TTT-A-------TCAT---G-GATATGAATAAA-AA--ACAC--C-TTCA-ATATTTTAT----------TTT-G-AT------T-TAT--ATCCAGTTGGTTT-G-AGT-------TTTAATTT-TGTT-TT-C----TTAA--CCG---A--GTGATTT---AAATCT--GTATC--ACTGCAG-AGCTCAC-TTCCGGTTTTCA-CATCATGGAGTTAGGG-ATG--AGCT-ATCG--AAGTG----AGAAAAAAAAC--CGGTT-AGAC-AA---GTCGTAA-TCGTT-GCATAG--GTAGG-AAT-TTCCG-CATGG-GTAAA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAG--GT-GAG--ACC-TCCAAAACTGC---GTTGCC-AT-CCTG-G--TG-------CTT-----TT---T--AGTAGGTGTGTAT--TATTATTTTT-TTTAATTTAGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAAAT--TTTGAT-------TAAA---TGAAAGCAA-A----ATCAAACTGTTTAAATAAAATTTGA-------TCGT---G-GATATAGCTAAA-GA--ACAT--C-TTCA-ATATTTTTT--AC-TTTTGTTTTG-ATTTA---T-T-T--ATCCATTTGATTT-GAGGC-------TTT-GTTT-TGCT-TT-C--ATTCAA--CCG---AATGATTTTT--AAA-TCT--GTATC--CCTGCAG-AGCTTACTTTC-GGTTTTCA-CATCATGGAGTTAGGGA-TG--AGCT-ATCG--AAGTATAA-AAAAAA-------CGGTC-AGAC-GAGC-GTCGTAA-TCGTCG-CATAG--GTAGGGAAT-TTCCG-CATAG-GTAAA--CAGCC-CAGACATT---CCGA-TTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAG--GTGG-G--GCC-TCCAAAAATGC---GTTGCC-AT-CCTA-GT--------GTTTT-----TT---TTAAGTAGGTG-GTG---TATTATTTTT-TTTATTT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------TAAA---TGAAAGCAA-A----ATCAATTGGTTTAAATAAAATTTGA-------TAGT---G-GATAAAAATAAA-AA--AC----T-CTCA-TTTTTTTT---AC-TTTTGTTTTG-AT--A---TATTT--ATCCAGTTGATTTTGAGAT-------TTT-GTTT-TGCT-TTTC--ATTTAA--CCG---AATGATTTTT--AAAATCT--GTGTC--ACTGCAG-AGCTTACTTTC--GTTTTCAACAACACGGA---------T---AGCTTATCG--AAGTG----AAAAAA-------CG-TC-AGGTTGAGA-GTTGTAAATCGTCGA-ATAG--GTAGGAAAT-TTCCCGCATGTTGT-AAAACAGCC-CAGACATTTTCCCGAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAG--GT-G-GGAACC-TCCAAAAGTGC---GTTGCC-ATCCCTG-G--TG-----GTTTT-----TTTTAT--AGTGGGT--GTA---TATT-TTTTT-TTTATTTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata-CACTGAC--CTTGAT-------TCAA---TGAAAGCAA-A----ATAAAGCTAATTAAGTAAAATTTGA-------TCAT---G-GGTTTGAATAAA-AA--ACAC-CT-CTAA-TATTGTTTTT-AC-CTTTGTTTTG-ATTTA---T-T-T--ATCCCGTTGATTT-GAAGT-------TTT-AATT-TGCT-TT-C--ATATAA--CCG---A--GTGATTT--AAAATAA--TTATC--ACTAGAG-GGTTCAA-TTCCGGTTCTCA-TATCATGAAGTTAGGG-GTG--AGCT-ATCG--TAGTGAAAAAAAAAA-------CGGCC-AGA--AAGG-GTCGTAA-TAATT-GCATAG--GTAGGAAAT-TTCAG-CATGC-ATAAA--CAGCC-CAGACACT---C------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAG--G-G--ACC-TCCAAAAGTGC---GTTGCC-TT-TCTG-A--TG-------TTT-----TT---T--AGCAGGTG-GTG---CATAATTTTTCTTTATCTAAGCTCTATt
gi|8 : AGAC--TTTGAT-------TCAA---TGAAAGC-A-A----ATAAAACTAGTTAAGTAAAATTTTA-------TCAT---GTG-TGTGAA-AAA-AA--ACAC-CT-TTAA-TATTTGTT---AC-CTTTGTTTTG-AT--T---T-TATTTATCCCGTTGATTT-GAAGT-------TTT-ATT-----------------AA--GCG---A-T-TGATT---AAAATCA--GTGTC--GCTAGAG-GGCTCACTTTTCGGTTCTCAATATCATGATGTGAGGGA-TG--AGCT-ATCtactgca
gi|8 : ACAGGAGTCT--GCAGTTGTTTCCAG-TAATAGAGC-TAAGAT---AAACAAAAA-ATAATACACCA--TCTACT------AAAAACCATCAG-AATGGG--AG-CGCATTTTT-TTGAGGTT-C-CATCTT--GAAAATAA------------------------------AACG-GGAA-AAT-----------TTCGGAG-TAATTTGAGTGTCTGGGCTATTA-ATG-CATGCTG-AAA-TTCCTACCTA-G-CG-ACGATatcgtcgctaggtaggaatttcagcatgcattaatagcccagacactcaaattactccgaaattttcccgttttattttcaagatggaacctcaaaaaaatgcgctcccattctgatggtttttagtagatggtgtattattttttgtttatcttagctctattactggaaacaactgcagactcctgtggt
gi|9 : agactttgattcaatgaaagcaaataaaactagttaagtaaaattttatcatgtgtgtgaaaaaaaacacctttaatatttgttacctttgttttgattttatttatcccgttgatttgaagttttattaagcgattgattaaaatcagtgtcgctagagggctcacttttcggttctcaatatcatgatgtgagggatgagctatcT--A---T-T-T--ATCCAGTTGATTT-GAA-C-------TTC-ATTTCTGCT-TT-C--CTTTAA--TCG---A-T-TGGTTT--AA--TCTTAGTAGC--AGTGCAA-ATCTCACTT-CCGGTTTTCA-CATCATGGAGTTCGGGA-TA--CACT-ATCG--AAGAG----AAAAAA-------AAGTCCAGAA-AAGG-GTTGTAA-TCGTCG-CATAG--GTAGGAAAT-TTCCG-CGTGG-AT-AAT-CAGCC-CAAACAAT---CCTA-TTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCAG-----G-A--A------AAAAATGC---GTTGCC-AT-GCCG-GT-GGA----GTATT-----TG---T--AGTAGG-G-ATG---TATTATCTAT-Tggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGGGGGGGGGTCCTGAAAAATTACGTGTTGGTGTAGCTGGACAATTTAGTGATGATTTCAACACTCGGGGTGTTTCGGCTCTTTATT
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 333 111 222 222 33333 1 11111 11 1 1111111 11 1 22222 2222222222222222222222222222222222 11111 1 1 1 1 1 11 1 11111 4444444444 1 111 1 1 11 111 11 222 1111111 11111 1 222222222 222222 1111 2222222 11 2 3333333333 111111 111 1
lowQualScore : 2 000 2 55 0 8 0 0 8 444 111 0 111 66666 3 88888 00 3 8888888 88 3 55555 8888888888888888888888888888888888 8 2 33333 0 3 0 0 5 0 0 33 2 0 55555 3333333333 3 0 666 0 0 7 88 444 11 8 222 66 4444444 777 66 4 9999 888888 4 44 4 3 3 55 55555 999 1 3 3 1 2 333333333 3 3 3 3 2 3 3 3 55 55 666666 55 6666 88 4 55 55 3 8 2 3 3 0 1 2 44 55 3 55 88 55 9999 0000000 3 44 00 3 3 2 55 3 3 3 3 3 3 555 2 33 5555 2 4 2 33 3 3 3 44 555 3 3 3 7777777777 99999 444444 0 4 8 4 99 222 4 3
lowQualScore : . ... . .. . . . . . ... ... . ... ..... . ..... .. . ....... .. . ..... .................................. . . ..... . . . . . . . .. . . ..... .......... . . ... . . . .. ... .. . ... .. ....... ... .. . .... ...... . .. . . . .. ..... ... . . . . . ......... . . . . . . . . .. .. ...... .. .... .. . .. .. . . . . . . . . .. .. . .. .. .. .... ....... . .. .. . . . .. . . . . . . ... . .. .... . . . .. . . . .. ... . . . .......... ..... ...... . . . . .. ... . .
lowQualScore : 5 888 5 00 8 0 8 8 0 000 222 8 444 00000 3 77777 33 3 7777777 33 3 33333 6666666666666666666666666666666666 8 5 88888 0 2 0 0 0 0 2 88 0 0 22222 8888888888 2 0 222 0 0 3 33 000 00 0 111 11 4444444 888 11 4 4444 444444 0 77 0 0 6 00 11111 555 0 6 6 0 4 555555555 6 6 6 6 0 6 6 6 00 00 555555 00 4444 66 0 55 00 6 8 8 6 6 3 4 1 88 00 6 00 66 00 1111 9999999 6 88 22 6 6 2 00 6 6 6 6 3 1 000 9 99 4444 9 2 9 99 5 1 1 88 888 3 3 3 6666666666 11111 444444 7 0 0 0 55 222 4 3
consensus : ACAGGAATCTC-GAAGTTNNTTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACCN--CCTACT---A-AAAAAAACACCAG-GAT-GC--AANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGATCGAC-C-G-GAGA-AT---------------TTCG------------TAATCGGAATGTCTGGGCTGTTT-NCC-CATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC----CTTCA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCG---A-GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTCG-CATAG--GTAGGAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGACACT---CCG-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAATCT--GAAGTTNTTTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACCA--CCTACT---A-AAAAAAACACCAG-GATGGC--AACCGCACT-TTGGGGGT-C-CACCTG--GAAAATTATTT-ATTGGATCAAC-C-G-GAGA-AT---------------TCCG------------TAATCGGAATGTCTGGGCTGTTT-ACC-CATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCGT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC----TTTCA--NTNT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCG---ATGTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTCGACATAG--GTAGGAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGACATT---CCG-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|1 : ACAGGAATCTCTGAA-TTAATTTCAAATAATAA--C-TCAAAT---TAAAATATATATTA-ACCCCAACCTTACTTATA-AATAAAACACTAGTGATTACTCAATCGCACTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTT-GTGAGATATTTTCCACTGAAGTAATTCG------------TAATCGAAAGTTCTGGTCT-TTT-CCT-CAGTCTG-AAA-TTCCTAACTATGACGAACGATT-ACAAACATCTCAC-CGAACC--------TT----------TTTCACGTCAATAAGACCATCATCCT-AACT-CCA-GTTGTGAAAAAACCGACATACTTAAGC--TCTGCA-GTGACCACAGAT--TTTGAT-------T---AAA--TGAAAGAAA-A----A-CAAA--G---T-TTTAAA-A-AA----TGAATAGTGGATAAAAATAAATAAA--TACATCATTACA--ATATAT-TTATTACTTTTTCTTTGATA--T---ATT-TATTCCATTGCA-GTCGCATCGTTAATGT-CAA-T-TTCATATTTAATCTCGAATATGTAA--TTTAAA-AAATCT---TGT-CAAATTGC--AGAAGCTTACTTTCAAG-TTTA-AC-AACATAGA--TAGAG--TGAAAGC--ACC--GATAG--GTG----AAAAAC-------AAGT-CA-A-TGAGACATT-GA-AGCTG-CGACA-AGAAGTTAGAAAT-GC-TCT-CA---GGT-AAACAACCACAGACATT---CCG-ATTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCA-CTAGA-ACCATCCAAAAC-TGCTGTGTTCCT-AT-CCTGCGTGTGTATTTATTTTATTTATT---C--AATAG--G-GTGAAATTA--------TTT---AT-TT-A-CTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc------------TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-ACGATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCATTTCGCT-AGCTCAT---CCG-AACTCCCATGTTGTC--GAAACC-G---AAGTCAGCCTTCCGCGCGTGC-GAGGAATAATTTAATCACTCGAT---ACA--TGAATGCAACAATTTATCAAAGTCAGATGGATAAAAA-AAAGGTTC-ATT-TAGATATGAATAAA-AAA-----------TCA--ATTT-T-TTTTTTCTTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATCC--GAAGTTATTT-CAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC---CCTACTATAA-AAAAAAACACCAG-GAT-GC--AACCGCACT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGATCAAC-CGG-GAGA-AT---------------TTCAGCGATAATCTGTTAATCGGAATGTCT-GGCTGTTT-TAC-CATGCGGAAAATTTCCTACCTATG-CG-ACGATTAACAACT--CTCAT-CTGACC-GTT-TTTTA----------T----CTTCGAT-AGCTCATC--CCTAAACT-CC
gi|12 : c---CCG-ATTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAGGTGGG-ACC-TC---------------TACC-AT-CCTG-GT-GGTTT--GTTTT-----TTTTAT--AGTAGGGG-GTG-TATTATT-TTT--TTT---AT-TTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaaaatttgcaaaagcgtgaaagtcaaaagcacccCTAC--AG-AGGTCACTT-CCGGTTTTC-AC-ATCATGAAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAAA-CAAGT-GTC-CT-AATCGTCG-CAAAG--GTAGAAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGATATT---CCG-ATTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAGATGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT--------GTTTT-----atcattgaaataacttcagattcct
gi|14 : TT--G-AACTCCA-GTATTC--ACTTCGGAG-AG---ACTT-CTGGTGT---ACTAGCATGGAGTCCAGG-ATG--AGC----C--GC-AACTGTGGT--AAAAAG-------CTGG-AAAA-CGA----CCTGT-AATCATC-ACAGAG--ATTGGATAC-CT----------AAT-AAACAGCT-GAAATACC---GCG-GTTATTGAAATAGTCGCTAAA-TCGTACAG--CCAAAC-CCAGGAATATT-T--TT
gi|15 : gggacgggaattcctTTTATATG-AAA----G-ATCATGGATATGAATAAA-AAAAACAT----CTTCA--ATAT-T-TTTT-ACTTTTGTTTTC--A--TTT-ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCG---A-GTGA--TTT--A-AAATCT--
gi|16 : ATAAATGAT-AAA--CAT----ATTCC--ATAT-T-TCTTTTCTTTT---------------ATT-TATCCAGTGG-A-TTTG-CAATTTTATTT-TGC-T-TTC--ATTTAA--CTG---A-GTGA--TTT--A-GAAT
gi|17 : taaaaacacacccctactaaAATAGCC-CAGACACT---CCG-ATTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAGGTGGG-ACC-TCGAAAAA-TGC---GTTGCC-AT-CCTG-Gtggtcttattt
gi|18 : ccT-AAAGAGCC-GAAACACC---CCG-AGTGTTGAAATCATCACTAAATTGTCCAGC--TACA-C-CAACACGTAAT-T--TTTCA----GG-ACC-CCCatt
gi|19 : gggggACAGGAATC----GAGTTTATTTCAA-TAATAGAGCCTCAAAT---AAAAAAAT---TAATACACCC--CCTACT---ATAAAAAAAtt
gi|2 : ACAG-AGTCTT-GAAGCTTTTTTCAA-TAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACCA--CCTACT---A-AAAAAAACACCAG-GATGGC--AAA-ACATT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGATCGAC-C-G-GAGA--T---------------TCTG------------TAATCGGAATGTTCTGGCTGTTT-ACC-CATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-ACGACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGATGTG--AAAACCGA---AAGTAAGC--TCTGCA-GTGA-TACAGAT--TTTGAT-------T---CAA--TGAAAGTCA-A----ATCAAA--C---TGTTCAAAT--AAA-TGTG-ATCGTGG-TATAAATAAA-AAA--CATA---TTTCATTTTTT-T-TTTTTACTTTTG-TTTG--A--T---ATTATATCCA-TTG-A-TTTG-AGGTTTTGTTT-TGC-TCTTC--ATTTAA--CAGA--ACGTTT--TTT--A-AAATCT--GTAT-C--ACTGC--A--AGCTTACTTTTCGGTTTTC-AC-AACATGGAGTTTGGGAATG--AGC-TATC--G--AA---TG----AACAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATC-TCAACATAG--GTAGGAAATCTT-CCGCCATG-GGT--AACAGCC-CAGACATT---CCG-ATTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCACGT-GG-ACC-TCCAAAAA-TGC---GTTGCCAAT-CCTG-AT-TG-----GTTTT-----TT---T--AGTAGGTT-GTG-TACTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|21 : TTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACAC--CCTAC
gi|3 : ACCGG---AAGTGAGC--TCTGCA-GT---CACAGAT--TTTGAT-------TTAAAAA--TGAAAGCAA-A----ATCAAA--C---TGTTTATATA-AAA-TTTG-ATCATGGATATGAATAAA-AAA--CAC----CTTCA--ATAT-T-TTTT-A-TTTTGATTT----------ATT-TATCCAGTTG-G-TTTG-AGGTTTTATTT-TGT-T-TTC--ATTTAA--CCG---A-GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAACCCGGT-TAGA-CAAGG-GTC-GT-AATCGTTG-CATAG--GTAGGAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGACATT---CCG-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-GT--------GCTTT-----TT---T--AGTAGGTG-GTG-TATTATTATTT--TTTTTAAT-TT-AGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCTGCA-GT---CACAGAT--TTTGAT-------T---AAAAATGAAAGCAA-A----ATCAAA--C---TGTT--ATTATAAA-TTT--ATCATGGATATGAATAAA-AAA--CAC----CTTCA--ATA-----------TTTTATTTTG--A--T---TTA-TATCCAGTTG-G-TTTG-AGTTTTAATTT-TGT-T-TTC----TTAA--CCG---A-GTGA--TTT----AAATCT--GTAT-C--ACTGC--AG-AGCTCAC-TTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAC--CGGT-TAGA-CAA---GTC-GT-AATCGTTG-CATAG--GTAGG-AAT-TT-CCG-CATG-GGT-AAACAGCC-CAGACATT---CCG-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G--TG-------CTT-----TT---T--AGTAGGTGTGTATTATTATT-TTT--TTTA--AT-TT-AGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAAAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATAGCTAAA-GAA--CAT----CTTCA--ATAT-T-TTTT-ACTTTTGTTTTG--A--TTT-ATT-TATCCATTTG-A-TTTG-AGGCTTTGTTT-TGC-T-TTC--ATTCAA--CCG---A-ATGA--TTT--TTAAATCT--GTAT-C--CCTGC--AG-AGCTTACTTTC-GGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTATAA-AAAAAA-------CGGT-CAGA-CGAGC-GTC-GT-AATCGTCG-CATAG--GTAGGGAAT-TT-CCG-CATA-GGT-AAACAGCC-CAGACATT---CCG-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-GCC-TCCAAAAA-TGC---GTTGCC-AT-CCTA-GT--------GTTTT-----TT---TTAAGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAT--T---GGTTTAAATA-AAA-TTTG-ATAGTGGATAAAAATAAA-AA----AC----TCTCA----TT-T-TTTTTACTTTTGTTTTGATA--T---ATT-TATCCAGTTG-ATTTTG-AGATTTTGTTT-TGCTT-TTC--ATTTAA--CCG---A-ATGATTTTT--A-AAATCT--GTGT-C--ACTGC--AG-AGCTTACTTTC--GTTTTCAAC-AACACGGA-T-----------AGCTTATC--G--AA--GTG----AAAAAA-------C-GT-CAGGTTGAGA-GTT-GTAAATCGTCGA-ATAG--GTAGGAAAT-TTCCCG-CATGTTGTAAAACAGCC-CAGACATTTTCCCGAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAGGTGGGAACC-TCCAAAAG-TGC---GTTGCC-ATCCCTG-G--TG-----GTTTT-----TTTTAT--AGTGGGT--GTA-TATT-TT-TTT--TTT---AT-TTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata-CACTGAC--CTTGAT-------T---CAA--TGAAAGCAA-A----ATAAAG--C---TAATTAAGTA-AAA-TTTG-ATCATGGGTTTGAATAAA-AAA--CAC----CTCTA--ATAT-TGTTTTTACCTTTGTTTTG--ATTT---ATT-TATCCCGTTG-A-TTTG-AAGTTTTAATT-TGC-T-TTC--ATATAA--CCG---A-GTGA--TTT--A-AAATAA--TTAT-C--ACTAG--AG-GGTTCAA-TTCCGGTTCTC-AT-ATCATGAAGTTAGGG-GTG--AGC-TATC--G--TA--GTGAAAAAAAAAA-------CGGC-CAGA--AAGG-GTC-GT-AATAATTG-CATAG--GTAGGAAAT-TT-CAG-CATG-CAT-AAACAGCC-CAGACACT---C------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAGGG-ACC-TCCAAAAG-TGC---GTTGCC-TT-TCTG-A--TG-------TTT-----TT---T--AGCAGGTG-GTG-CATAATT-TTTC-TTT---AT-CTAAGCTCTATt
gi|8 : AGAC--TTTGAT-------T---CAA--TGAAAGCAA-A-----TAAAA--C---TAGTTAAGTA-AAA-TTTT-ATCATGTGTGTGAA-AAA-AAA--CAC----CTTTA--ATAT-T-TGTT-ACCTTTGTTTTG--A--TTTTATT-TATCCCGTTG-A-TTTG-AAGTTTTATT-----------------AA--GCG---AT-TGA--TT---A-AAATCA--GTGT-C--GCTAG--AG-GGCTCACTTTTCGG--TTC-----TCA-----------------A---TATCATG--AT--GTG----A-------------GG----GA-TGAG---CT-AT-CATCGTCG-C-TAG--GTAGGAA-T-TT-CAG-CATG-CAT-TAATAGCC-CAGACACT---C---------AAATTACTC-CGAAATTTTCCCGT--T-------------TTAT-T--TTCAAGATGGA-ACC-TCAAAAAAATGC---GCTCCC-AT-TCTG-AT--G-----GTTTT-----T-------AGTAGATG-GTG-TATTATT-TTTTGTTT---ATCTT-AGCTCTATtactgca
gi|9 : --T---ATT-TATCCAGTTG-A-TTTG-AA-CTTCATTTCTGC-T-TTC--CTTTAA--TCG---AT-TGG--TTT--A-A--TCTTAGTAG-C--AGTGC--AA-ATCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTCGGG-ATA--CAC-TATC--G--AA--GAG----AAAAAA-------AAGTCCAGA-AAAGG-GTT-GT-AATCGTCG-CATAG--GTAGGAAAT-TT-CCG-CGTG-GAT-AATCAGCC-CAAACAAT---CCT-ATTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCA---GGA-A------AAAAA-TGC---GTTGCC-AT-GCCG-GT-GGA----GTATT-----TG---T--AGTAGG-G-ATG-TATTATC-TAT--Ttactggaaacaactgcagactcctgtggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 111 11 111 1111 1111 33333 1 333 1 111111 11 1 999999999999999999 1 555555555555 111 1 1 1 1 1 11 1 11111 4444444444 1 111 1 1 11 111 11 222 1111111 1 222222222 1111 1111 2222222 11 3333333333 111111 111 1
lowQualScore : 2 888 11 8 0 0 8 444 8888 8 7777 66666 3 666 77 3 888888 88 3 888888888888888888 3 3 7 111111111111 8 2 444 0 3 0 0 5 0 0 33 0 55555 3333333333 3 0 666 0 0 7 88 444 11 8 222 66 4444444 777 66 4 9999 888888 4 44 4 3 3 55 66 7777 55 0 3 3 1 2 333333333 3 3 3 3 1 3 3 3 55 55 2222 55 6666 88 4 55 55 3 8 2 3 3 0 1 2 44 55 3 55 88 55 9999 0000000 3 44 22 3 3 3 3 666 3 3 3 3 3 2 2 555 2 2 33 5555 2 4 2 33 3 3 3 44 555 3 3 3 7777777777 99999 444444 0 4 8 4 99 222 4 3
lowQualScore : . ... .. . . . . ... .... . .... ..... . ... .. . ...... .. . .................. . . . ............ . . ... . . . . . . . .. . ..... .......... . . ... . . . .. ... .. . ... .. ....... ... .. . .... ...... . .. . . . .. .. .... .. . . . . . ......... . . . . . . . . .. .. .... .. .... .. . .. .. . . . . . . . . .. .. . .. .. .. .... ....... . .. .. . . . . ... . . . . . . . ... . . .. .... . . . .. . . . .. ... . . . .......... ..... ...... . . . . .. ... . .
lowQualScore : 5 222 88 0 8 8 0 000 8888 8 0000 00000 3 777 77 3 000000 33 3 333333333333333333 7 3 3 222222222222 8 5 888 0 2 0 0 0 0 2 88 0 22222 8888888888 2 0 222 0 0 3 33 000 00 0 111 11 4444444 888 11 4 4444 444444 0 77 0 0 6 00 55 7777 00 2 6 6 0 4 555555555 6 6 6 6 2 6 6 6 00 00 7777 00 4444 66 0 55 00 6 8 8 6 6 3 4 1 88 00 6 00 66 00 1111 9999999 6 88 55 6 6 6 6 444 3 3 3 3 1 9 9 000 9 9 99 4444 9 2 9 99 5 1 1 88 888 3 3 3 6666666666 11111 444444 7 0 0 0 55 222 4 3
consensus : ACAGGAATCTCGGAGTTNATTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACCCC----CTACT---A-AAAAAAACACCAG-GATGG--CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAATCTCGAAGTTNNTTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACCNC----CTACT---A-AAAAAAACACCAG-GATG---CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTN--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|1 : ACAGGAATCTCTGAATTAATTTCAAATAATAA--C-TCAAAT---TAAAATATA--TATTA-ACCCCAACCTTACTTATA-AATAAAACACTAGTGATTACTCAATCGCACTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTTGTGAGATATTTTCCACT-GAAGTAATTCG------------TAATCGAAAGTTCTGGTCT-TTTC--CTCAGTCTG-AAA-TTCCTAACTATGACGAACGATT-ACAAACATCTCAC-CGAACC--------TT----------TTTCACGTCAATAAGACCATCATCCT-AACT-CCA-GTTGTGAAAAAACCGACATACTTAAGC--TCTGCA-GTGACCACAGAT--TTTGAT-------T---AAA--TGAAAGAAA-A----A-CAAA--G---T-TTTAAA-A-AA----TGAATAGTGGATAAAAATAAATAAA--TAC-ATCATTACA--ATATAT-TTATTACTTTTTCTTTGATA--T---ATT-TATTCCATTGCA-GTCGCATCGTTAATGT-CAA-T-TTCATATTTAATCTCGAATATGTAA--TTTAAA-AAATCT---TGT-CAAATTGC--AGAAGCTTACTTTCAAG-TTTA-AC-AACATAGA--TAGAG--TGAAAGC--ACC--GATAG--GTG----AAAAAC-------AAGT-CA-A-TGAGACATT-G--AA--GCT-GCGACAAGAAGTTAGAAAT-GC-TCT-CA---GGT-AAACAACCACAGA-CATT---CC-G-ATTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCA-CTAGA-ACCATCCAAAAC-TGCTGTGTTCCT-AT-CCTGCGTGTGTATTTATTTTATTTATT---C--AATAG--G-GTGAAATTA--------TTT---AT-TT-A-CTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc------------TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-ACGATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCATTTCGCT-AGCTCAT---CCG-AACTCCCATGTTGTC--GAAACC-G---AAGTCAGCCTTCCGCGCGTGC-GAGGAATAATTTAATCACTCGAT---ACA--TGAATGCAACAATTTATCAAAGTCAGATGGATAAAAA-AAAGGTTC-ATT-TAGATATGAATAAA-AAA--------T----CA--ATTT-T-TTTTTTCTTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATC-CGAAGTTA-TTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC-C----CTACTATAA-AAAAAAACACCAG-GATG---CAACCGCACT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGA------------------TCAACCGGGAGAATTTCAGCGATAATCTGTTAATCGGAATGTCT-GGCTGTTTT--ACCATGCGGAAAATTTCCTACCTATG-CG-ACGATTAACAACT--CTCAT-CTGACC-GTT-TTTTA----------T----CTTCGAT-AGCTCATC--CCTAAACT-CC
gi|12 : cAAAT-TT-GCA-AAAG-CGT-GAA-AGTC-AAAAGCACC---CCCG-ATTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAGGTGGG-ACC-TC---------------TACC-AT-CCTG-GT-GGTTT--GTTTT-----TTTTAT--AGTAGGGG-GTG-TATTATT-TTT--TTT---AT-TTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaCTAC--AG-AGGTCACTT-CCGGTTTTC-AC-ATCATGAAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAAA-CAAGT-GTC-CT-AATCGTC-GC-AAAGGTAG---AAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-TATT---CC-G-ATTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAGATGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT--------GTTTT-----atcattgaaataacttcagattcct
gi|14 : TT--G-AACTCCA-GTATTC--ACTTCGGAG-AG---ACTT-CTGGTGT---ACTAGCATGGAGTCCAGG-ATG--AGC----C--GC-AACTGTGGT--AAAAAG-------CTGG-AAAA-CGA----CCTGT-AATCATC-AC-AGAGATTG---GATAC-CT----------AAT-AAACAGCT-GAAA-TACC---GC-G-GTTATTGAAATAGTCGCTAAA-TCGTACAG--CCAAAC-CCAGGAATATT-T--TT
gi|15 : gggacgggaattcctTTTATATG-AAA----G-ATCATGGATATGAATAAA-AAAAACAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTC--A--TTT-ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--
gi|16 : ATAAATGAT-AAA--CAT-ATT----CC--ATAT-T-TCTTTTCTTTT---------------ATT-TATCCAGTGG-A-TTTG-CAATTTTATTT-TGC-T-TTC--ATTTAA--CTGA----GTGA--TTT--A-GAAT
gi|17 : taaaaacacacccctactaaAATAGCC-CAGA-CACT---CC-G-ATTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAGGTGGG-ACC-TCGAAAAA-TGC---GTTGCC-AT-CCTG-Gtggtcttattt
gi|18 : ccT-AAAGAGCC-GAAA-CACC---CC-G-AGTGTTGAAATCATCACTAAATTGTCCAGC--TACA-C-CAACACGTAAT-T--TTTCA----GG-ACC-CCCatt
gi|19 : gggggACAGGAATC---GAGTTTATTTCAA-TAATAGAGCCTCAAAT---AAAAAAAT---TAATACACCCC----CTACT---ATAAAAAAAtt
gi|2 : ACAG-AGTCTTGAAGCTTTTTTCAA-TAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACCAC----CTACT---A-AAAAAAACACCAG-GATGG--CAAA-ACATT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGA------------------TCGACC-GGAGA-TTCTG------------TAATCGGAATGTTCTGGCTGTTTA--CCCATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-ACGACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGATGTG--AAAACCGA---AAGTAAGC--TCTGCA-GTGA-TACAGAT--TTTGAT-------T---CAA--TGAAAGTCA-A----ATCAAA--C---TGTTCAAAT--AAA-TGTG-ATCGTGG-TATAAATAAA-AAA--CATATTT----CATTTTTT-T-TTTTTACTTTTG-TTTG--A--T---ATTATATCCA-TTG-A-TTTG-AGGTTTTGTTT-TGC-TCTTC--ATTTAA--CAGAAC--GTTT--TTT--A-AAATCT--GTAT-C--ACTGC--A--AGCTTACTTTTCGGTTTTC-AC-AACATGGAGTTTGGGAATG--AGC-TATC--G--AA---TG----AACAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATC-TCAAC-ATAGGTAG---GAAATCTT-CCGCCATG-GGT--AACAGCC-CAGA-CATT---CC-G-ATTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCACGT-GG-ACC-TCCAAAAA-TGC---GTTGCCAAT-CCTG-AT-TG-----GTTTT-----TT---T--AGTAGGTT-GTG-TACTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|21 : TTTCAA-TAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACACC----CTAC
gi|3 : ACCGG---AAGTGAGC--TCTGCA-GT---CACAGAT--TTTGAT-------TTAAAAA--TGAAAGCAA-A----ATCAAA--C---TGTTTATATA-AAA-TTTG-ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTT-A-TTTTGATTT----------ATT-TATCCAGTTG-G-TTTG-AGGTTTTATTT-TGT-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAACCCGGT-TAGA-CAAGG-GTC-GT-AATCGTT-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-GT--------GCTTT-----TT---T--AGTAGGTG-GTG-TATTATTATTT--TTTTTAAT-TT-AGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCTGCA-GT---CACAGAT--TTTGAT-------T---AAAAATGAAAGCAA-A----ATCAAA--C---TGTT--ATTATAAA-TTT--ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TT---------ATTTTG--A--T---TTA-TATCCAGTTG-G-TTTG-AGTTTTAATTT-TGT-T-TTC----TTAA--CCGA----GTGA--TTT--A-AA-TCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAC--CGGT-TAGA-CAAG---TC-GT-AATCGTT-GC-ATAGGTAG---GAA-T-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G--TG-------CTT-----TT---T--AGTAGGTGTGTATTATTATT-TTT--TTTA--AT-TT-AGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAAAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATAGCTAAA-GAA--CAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTG--A--TTT-ATT-TATCCATTTG-A-TTTG-AGGCTTTGTTT-TGC-T-TTC--ATTCAA--CCGA----ATGA--TTT--TTAAATCT--GTAT-C--CCTGC--AG-AGCTTACTTTC-GGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTATAA-AAAAAA-------CGGT-CAGA-CGAGC-GTC-GT-AATCGTC-GC-ATAGGTAG---GGAAT-TT-CCG-CATA-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-GCC-TCCAAAAA-TGC---GTTGCC-AT-CCTA-GT--------GTTTT-----TT---TTAAGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAT--T---GGTTTAAATA-AAA-TTTG-ATAGTGGATAAAAATAAA-AAA--CTC---T----C---AT-T-T-TTTTTACTTTTGTTTTGATA--T---ATT-TATCCAGTTG-ATTTTG-AGATTTTGTTT-TGCTT-TTC--ATTTAA--CCGA----ATGATTTTT--A-AAATCT--GTGT-C--ACTGC--AG-AGCTTACTTTC--GTTTTCAAC-AACACGGA-T-----------AGCTTATC--G--AA--GTG----AAAAAA-------C-GT-CAGGTTGAGA-GTT-GTAAATCGTC-GA-ATAGGTAG---GAAAT-TTCCCG-CATGTTGTAAAACAGCC-CAGA-CATTTTCCC-GAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAGGTGGGAACC-TCCAAAAG-TGC---GTTGCC-ATCCCTG-G--TG-----GTTTT-----TTTTAT--AGTGGGT--GTA-TATT-TT-TTT--TTT---AT-TTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata-CACTGAC--CTTGAT-------T---CAA--TGAAAGCAA-A----ATAAAG--C---TAATTAAGTA-AAA-TTTG-ATCATGGGTTTGAATAAA-AAA--CAC-CTC----TA--ATAT-TGTTTTTACCTTTGTTTTG--ATTT---ATT-TATCCCGTTG-A-TTTG-AAGTTTTAATT-TGC-T-TTC--ATATAA--CCGA----GTGA--TTT--A-AAATAA--TTAT-C--ACTAG--AG-GGTTCAA-TTCCGGTTCTC-AT-ATCATGAAGTTAGGG-GTG--AGC-TATC--G--TA--GTGAAAAAAAAAA-------CGGC-CAGA--AAGG-GTC-GT-AATAATT-GC-ATAGGTAG---GAAAT-TT-CAG-CATG-CAT-AAACAGCC-CAGA-CACT---C-------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAGGG-ACC-TCCAAAAG-TGC---GTTGCC-TT-TCTG-A--TG-------TTT-----TT---T--AGCAGGTG-GTG-CATAATT-TTTC-TTT---AT-CTAAGCTCTATt
gi|8 : AGAC--TTTGAT-------T---CAA--TGAAAGCAA-A-----TAAAA--C---TAGTTAAGTA-AAA-TTTT-ATCATGTGTGTGAA-AAA-AAA--CAC-CTT----TA--ATAT-T-TGTT-ACCTTTGTTTTG--A--TTTTATT-TATCCCGTTG-A-TTTG-AAGTTTTATT-----------------AA--GCGA----TTGA--TT---A-AAATCA--GTGT-C--GCTAG--AG-GGCTCACTTTTCGG--TTC-----TCA-----------------A---TATCATG--AT--GTG----A-------------GG----GA-TGAG---CT-AT-CATCGTC-GC--TAGGTAG---GAA-T-TT-CAG-CATG-CAT-TAATAGCC-CAGA-CACT---C----------AAATTACTC-CGAAATTTTCCCGT--T-------------TTAT-T--TTCAAGATGGA-ACC-TCAAAAAAATGC---GCTCCC-AT-TCTG-AT--G-----GTTTT-----T-------AGTAGATG-GTG-TATTATT-TTTTGTTT---ATCTT-AGCTCTATtactgca
gi|9 : --T---ATT-TATCCAGTTG-A-TTTG-A-ACTTCATTTCTGC-T-TTC--CTTTAA--TCGA----TTGG--TTT-----AATCTTAGTAG-C--AGTGC--AA-ATCTCAC-TTCCGGTTTTC-AC-ATCATGGAGTTCGGG-ATA--CAC-TATC--G--AA--GAG----AAAAAA-------AAGTCCAGA-AAAGG-GTT-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CGTG-GAT-AATCAGCC-CAAA-CAAT---CC-T-ATTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCA---GGA-A------AAAAA-TGC---GTTGCC-AT-GCCG-GT-GGA----GTATT-----TG---T--AGTAGG-G-ATG-TATTATC-TAT--Ttactggaaacaactgcagactcctgtggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 111 1 1111 11 1111 222222222 1 2222 1 111111 11 1 999999999999999999 1 555555555555 111 1 1 1 1 1 11 1 11111 4444444444 1 111 1 1 11 111 11 222 1111111 1 222222222 1111 1111 2222222 11 3333333333 111111 111 1
lowQualScore : 2 888 0 8 66 8 4444 77 7777 333333333 3 8888 77 3 888888 88 3 888888888888888888 3 3 7 111111111111 8 2 444 0 3 0 0 5 0 0 33 0 55555 3333333333 3 0 666 0 0 7 88 444 11 8 222 66 4444444 777 66 4 9999 888888 4 44 4 3 3 55 66 7777 55 0 3 3 1 2 333333333 3 3 3 3 1 3 3 3 55 55 2222 55 6666 88 4 55 55 3 8 2 3 3 0 1 2 44 55 3 55 88 55 9999 0000000 3 44 22 3 3 3 3 666 3 3 3 3 3 2 2 555 2 2 33 5555 2 4 2 33 3 3 3 44 555 3 3 3 7777777777 99999 444444 0 4 8 4 99 222 4 3
lowQualScore : . ... . . .. . .... .. .... ......... . .... .. . ...... .. . .................. . . . ............ . . ... . . . . . . . .. . ..... .......... . . ... . . . .. ... .. . ... .. ....... ... .. . .... ...... . .. . . . .. .. .... .. . . . . . ......... . . . . . . . . .. .. .... .. .... .. . .. .. . . . . . . . . .. .. . .. .. .. .... ....... . .. .. . . . . ... . . . . . . . ... . . .. .... . . . .. . . . .. ... . . . .......... ..... ...... . . . . .. ... . .
lowQualScore : 5 222 8 0 44 0 8888 00 0000 555555555 3 7777 77 3 000000 33 3 333333333333333333 7 3 3 222222222222 8 5 000 0 2 0 0 0 0 2 88 0 22222 8888888888 2 0 222 0 0 3 33 000 00 0 111 11 4444444 888 11 4 4444 444444 0 77 0 0 6 00 55 7777 00 2 6 6 0 4 555555555 6 6 6 6 2 6 6 6 00 00 7777 00 4444 66 0 55 00 6 8 8 6 6 3 4 1 88 00 6 00 66 00 1111 9999999 6 88 55 6 6 6 6 444 3 3 3 3 1 9 9 000 9 9 99 4444 9 2 9 99 5 1 1 88 888 3 3 3 6666666666 11111 444444 7 0 0 0 55 222 4 3
consensus : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT-G--CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAATCTCGGAGTTNATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GATGG--CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|1 : ACAGGAATCTCTGAATTAATTTCAAATAAT--AAC-TCAAAT----TAAAATAT-ATATTA-ACCCCAACCTTACTTAT---A-AATAAAACACTAGTGATTACTCAATCGCACTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTTGTGAGATATTTTCCACT-GAAGTAATTCG------------TAATCGAAAGTTCTGGTCT-TTTC--CTCAGTCTG-AAA-TTCCTAACTATGACGAACGATT-ACAAACATCTCAC-CGAACC--------TT----------TTTCACGTCAATAAGACCATCATCCT-AACT-CCA-GTTGTGAAAAAACCGACATACTTAAGC--TCTGCA-GTGACCACAGAT--TTTGAT-------T---AAA--TGAAAGAAA-A----A-CAAA--G---T-TTTAAA-A-AA----TGAATAGTGGATAAAAATAAATAAA--TAC-ATCATTACA--ATATAT-TTATTACTTTTTCTTTGATA--T---ATT-TATTCCATTGCA-GTCGCATCGTTAATGT-CAA-T-TTCATATTTAATCTCGAATATGTAA--TTTAAA-AAATCT---TGT-CAAATTGC--AGAAGCTTACTTTCAAG-TTTA-AC-AACATAGA--TAGAG--TGAAAGC--ACC--GATAG--GTG----AAAAAC-------AAGT-CA-A-TGAGACATT-G--AA--GCT-GCGACAAGAAGTTAGAAAT-GC-TCT-CA---GGT-AAACAACCACAGA-CATT---CC-G-ATTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCA-CTAGA-ACCATCCAAAAC-TGCTGTGTTCCT-AT-CCTGCGTGTGTATTTATTTTATTTATT---C--AATAG--G-GTGAAATTA--------TTT---AT-TT-A-CTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc------------TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-ACGATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCATTTCGCT-AGCTCAT---CCG-AACTCCCATGTTGTC--GAAACC-G---AAGTCAGCCTTCCGCGCGTGC-GAGGAATAATTTAATCACTCGAT---ACA--TGAATGCAACAATTTATCAAAGTCAGATGGATAAAAA-AAAGGTTC-ATT-TAGATATGAATAAA-AAA--------T----CA--ATTT-T-TTTTTTCTTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATC-CGAAGTT-ATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACA-C----CCCTAC---TATAA-AAAAAAACACCAG-GAT-G--CAACCGCACT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGA------------------TCAACCGGGAGAATTTCAGCGATAATCTGTTAATCGGAATGTCT-GGCTGTTTT--ACCATGCGGAAAATTTCCTACCTATG-CG-ACGATTAACAACT--CTCAT-CTGACC-GTT-TTTTA----------T----CTTCGAT-AGCTCATC--CCTAAACT-CC
gi|12 : cAAAT-TT-GCA-AAAG-CGT-GAA-AGTC-AAAAGCACC---CCCG-ATTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAGGTGGG-ACC-TC---------------TACC-AT-CCTG-GT-GGTTT--GTTTT-----TTTTAT--AGTAGGGG-GTG-TATTATT-TTT--TTT---AT-TTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaCTAC--AG-AGGTCACTT-CCGGTTTTC-AC-ATCATGAAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAAA-CAAGT-GTC-CT-AATCGTC-GC-AAAGGTAG---AAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-TATT---CC-G-ATTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAGATGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT--------GTTTT-----atcattgaaataacttcagattcct
gi|14 : TT--G-AACTCCA-GTATTC--ACTTCGGAG-AG---ACTT-CTGGTGT---ACTAGCATGGAGTCCAGG-ATG--AGC----C--GC-AACTGTGGT--AAAAAG-------CTGG-AAAA-CGA----CCTGT-AATCATC-AC-AGAGATTG---GATAC-CT----------AAT-AAACAGCT-GAAA-TACC---GC-G-GTTATTGAAATAGTCGCTAAA-TCGTACAG--CCAAAC-CCAGGAATATT-T--TT
gi|15 : gggacgggaattcctTTTATATG-AAA----G-ATCATGGATATGAATAAA-AAAAACAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTC--A--TTT-ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--
gi|16 : ATAAATGAT-AAA--CAT-ATT----CC--ATAT-T-TCTTTTCTTTT---------------ATT-TATCCAGTGG-A-TTTG-CAATTTTATTT-TGC-T-TTC--ATTTAA--CTGA----GTGA--TTT--A-GAAT
gi|17 : taaaaacacacccctactaaAATAGCC-CAGA-CACT---CC-G-ATTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAGGTGGG-ACC-TCGAAAAA-TGC---GTTGCC-AT-CCTG-Gtggtcttattt
gi|18 : ccT-AAAGAGCC-GAAA-CACC---CC-G-AGTGTTGAAATCATCACTAAATTGTCCAGC--TACA-C-CAACACGTAAT-T--TTTCA----GG-ACC-CCCatt
gi|19 : gggggACAGGAATC---GAGTTTATTTC-AATAATAGAGCCTCAAAT---AAAAAAAT---TAATACACC----CCCTAC---T---ATAAAAAAAtt
gi|2 : ACAG-AGTCTTGAAGCTTTTTTC-AATAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACC----ACCTAC---T---A-AAAAAAACACCAG-GATGG--CAAA-ACATT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGA------------------TCGACC-GGAGA-TTCTG------------TAATCGGAATGTTCTGGCTGTTTA--CCCATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-ACGACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGATGTG--AAAACCGA---AAGTAAGC--TCTGCA-GTGA-TACAGAT--TTTGAT-------T---CAA--TGAAAGTCA-A----ATCAAA--C---TGTTCAAAT--AAA-TGTG-ATCGTGG-TATAAATAAA-AAA--CATATTT----CATTTTTT-T-TTTTTACTTTTG-TTTG--A--T---ATTATATCCA-TTG-A-TTTG-AGGTTTTGTTT-TGC-TCTTC--ATTTAA--CAGAAC--GTTT--TTT--A-AAATCT--GTAT-C--ACTGC--A--AGCTTACTTTTCGGTTTTC-AC-AACATGGAGTTTGGGAATG--AGC-TATC--G--AA---TG----AACAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATC-TCAAC-ATAGGTAG---GAAATCTT-CCGCCATG-GGT--AACAGCC-CAGA-CATT---CC-G-ATTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCACGT-GG-ACC-TCCAAAAA-TGC---GTTGCCAAT-CCTG-AT-TG-----GTTTT-----TT---T--AGTAGGTT-GTG-TACTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|21 : TTTC-AATAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACA----CCCTAC---
gi|3 : ACCGG---AAGTGAGC--TCTGCA-GT---CACAGAT--TTTGAT-------TTAAAAA--TGAAAGCAA-A----ATCAAA--C---TGTTTATATA-AAA-TTTG-ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTT-A-TTTTGATTT----------ATT-TATCCAGTTG-G-TTTG-AGGTTTTATTT-TGT-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAACCCGGT-TAGA-CAAGG-GTC-GT-AATCGTT-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-GT--------GCTTT-----TT---T--AGTAGGTG-GTG-TATTATTATTT--TTTTTAAT-TT-AGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCTGCA-GT---CACAGAT--TTTGAT-------T---AAAAATGAAAGCAA-A----ATCAAA--C---TGTT--ATTATAAA-TTT--ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TT---------ATTTTG--A--T---TTA-TATCCAGTTG-G-TTTG-AGTTTTAATTT-TGT-T-TTC----TTAA--CCGA----GTGA--TTT--A-AA-TCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAC--CGGT-TAGA-CAAG---TC-GT-AATCGTT-GC-ATAGGTAG---GAA-T-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G--TG-------CTT-----TT---T--AGTAGGTGTGTATTATTATT-TTT--TTTA--AT-TT-AGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAAAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATAGCTAAA-GAA--CAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTG--A--TTT-ATT-TATCCATTTG-A-TTTG-AGGCTTTGTTT-TGC-T-TTC--ATTCAA--CCGA----ATGA--TTT--TTAAATCT--GTAT-C--CCTGC--AG-AGCTTACTTTC-GGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTATAA-AAAAAA-------CGGT-CAGA-CGAGC-GTC-GT-AATCGTC-GC-ATAGGTAG---GGAAT-TT-CCG-CATA-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-GCC-TCCAAAAA-TGC---GTTGCC-AT-CCTA-GT--------GTTTT-----TT---TTAAGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAT--T---GGTTTAAATA-AAA-TTTG-ATAGTGGATAAAAATAAA-AAA--CTC---T----C---AT-T-T-TTTTTACTTTTGTTTTGATA--T---ATT-TATCCAGTTG-ATTTTG-AGATTTTGTTT-TGCTT-TTC--ATTTAA--CCGA----ATGATTTTT--A-AAATCT--GTGT-C--ACTGC--AG-AGCTTACTTTC--GTTTTCAAC-AACACGGA-T-----------AGCTTATC--G--AA--GTG----AAAAAA-------C-GT-CAGGTTGAGA-GTT-GTAAATCGTC-GA-ATAGGTAG---GAAAT-TTCCCG-CATGTTGTAAAACAGCC-CAGA-CATTTTCCC-GAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAGGTGGGAACC-TCCAAAAG-TGC---GTTGCC-ATCCCTG-G--TG-----GTTTT-----TTTTAT--AGTGGGT--GTA-TATT-TT-TTT--TTT---AT-TTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata-CACTGAC--CTTGAT-------T---CAA--TGAAAGCAA-A----ATAAAG--C---TAATTAAGTA-AAA-TTTG-ATCATGGGTTTGAATAAA-AAA--CAC-CTC----TA--ATAT-TGTTTTTACCTTTGTTTTG--ATTT---ATT-TATCCCGTTG-A-TTTG-AAGTTTTAATT-TGC-T-TTC--ATATAA--CCGA----GTGA--TTT--A-AAATAA--TTAT-C--ACTAG--AG-GGTTCAA-TTCCGGTTCTC-AT-ATCATGAAGTTAGGG-GTG--AGC-TATC--G--TA--GTGAAAAAAAAAA-------CGGC-CAGA--AAGG-GTC-GT-AATAATT-GC-ATAGGTAG---GAAAT-TT-CAG-CATG-CAT-AAACAGCC-CAGA-CACT---C-------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAGGG-ACC-TCCAAAAG-TGC---GTTGCC-TT-TCTG-A--TG-------TTT-----TT---T--AGCAGGTG-GTG-CATAATT-TTTC-TTT---AT-CTAAGCTCTATt
gi|8 : AGAC--TTTGAT-------T---CAA--TGAAAGCAA-A-----TAAAA--C---TAGTTAAGTA-AAA-TTTT-ATCATGTGTGTGAA-AAA-AAA--CAC-CTT----TA--ATAT-T-TGTT-ACCTTTGTTTTG--A--TTTTATT-TATCCCGTTG-A-TTTG-AAGTTTTATT-----------------AA--GCGA----TTGA--TT---A-AAATCA--GTGT-C--GCTAG--AG-GGCTCACTTTTCGG--TTC-----TCA-----------------A---TATCATG--AT--GTG----A-------------GG----GA-TGAG---CT-AT-CATCGTC-GC--TAGGTAG---GAA-T-TT-CAG-CATG-CAT-TAATAGCC-CAGA-CACT---C----------AAATTACTC-CGAAATTTTCCCGT--T-------------TTAT-T--TTCAAGATGGA-ACC-TCAAAAAAATGC---GCTCCC-AT-TCTG-AT--G-----GTTTT-----T-------AGTAGATG-GTG-TATTATT-TTTTGTTT---ATCTT-AGCTCTATtactgca
gi|9 : --T---ATT-TATCCAGTTG-A-TTTG-A-ACTTCATTTCTGC-T-TTC--CTTTAA--TCGA----TTGG--TTT-----AATCTTAGTAG-C--AGTGC--AA-ATCTCAC-TTCCGGTTTTC-AC-ATCATGGAGTTCGGG-ATA--CAC-TATC--G--AA--GAG----AAAAAA-------AAGTCCAGA-AAAGG-GTT-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CGTG-GAT-AATCAGCC-CAAA-CAAT---CC-T-ATTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCA---GGA-A------AAAAA-TGC---GTTGCC-AT-GCCG-GT-GGA----GTATT-----TG---T--AGTAGG-G-ATG-TATTATC-TAT--Ttactggaaacaactgcagactcctgtggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 111 1111 11 1111 222222222 1 33333 1 111111 11 1 999999999999999999 1 555555555555 111 1 1 1 1 1 11 1 11111 4444444444 1 111 1 1 11 111 11 222 1111111 1 222222222 1111 1111 2222222 11 3333333333 111111 111 1
lowQualScore : 2 888 9 8 66 8 4444 77 7777 333333333 3 55555 77 3 888888 88 3 888888888888888888 3 3 7 111111111111 8 2 444 0 3 0 0 5 0 0 33 0 55555 3333333333 3 0 666 0 0 7 88 444 11 8 222 66 4444444 777 66 4 9999 888888 4 44 4 3 3 55 66 7777 55 0 3 3 1 2 333333333 3 3 3 3 1 3 3 3 55 55 2222 55 6666 88 4 55 55 3 8 2 3 3 0 1 2 44 55 3 55 88 55 9999 0000000 3 44 22 3 3 3 3 666 3 3 3 3 3 2 2 555 2 2 33 5555 2 4 2 33 3 3 3 44 555 3 3 3 7777777777 99999 444444 0 4 8 4 99 222 4 3
lowQualScore : . ... . . .. . .... .. .... ......... . ..... .. . ...... .. . .................. . . . ............ . . ... . . . . . . . .. . ..... .......... . . ... . . . .. ... .. . ... .. ....... ... .. . .... ...... . .. . . . .. .. .... .. . . . . . ......... . . . . . . . . .. .. .... .. .... .. . .. .. . . . . . . . . .. .. . .. .. .. .... ....... . .. .. . . . . ... . . . . . . . ... . . .. .... . . . .. . . . .. ... . . . .......... ..... ...... . . . . .. ... . .
lowQualScore : 5 222 8 0 44 0 8888 00 0000 555555555 3 00000 77 3 000000 33 3 333333333333333333 7 3 3 222222222222 8 5 000 0 2 0 0 0 0 2 88 0 22222 8888888888 2 0 222 0 0 3 33 000 00 0 111 11 4444444 888 11 4 4444 444444 0 77 0 0 6 00 55 7777 00 2 6 6 0 4 555555555 6 6 6 6 2 6 6 6 00 00 7777 00 4444 66 0 55 00 6 8 8 6 6 3 4 1 88 00 6 00 66 00 1111 9999999 6 88 55 6 6 6 6 444 3 3 3 3 1 9 9 000 9 9 99 4444 9 2 9 99 5 1 1 88 888 3 3 3 6666666666 11111 444444 7 0 0 0 55 222 4 3
consensus : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|1 : ACAGGAATCTCTGAATTAATTTCAAATAAT--AAC-TCAAAT----TAAAATAT-ATATTA-ACCCCAACCTTACTTAT---A-AATAAAACACTAGTGATTACT-CAATCGCACTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTTGTGAGATATTTTCCACT-GAAGTAATTCG------------TAATCGAAAGTTCTGGTCT-TTTC--CTCAGTCTG-AAA-TTCCTAACTATGACGAACGATT-ACAAACATCTCAC-CGAACC--------TT----------TTTCACGTCAATAAGACCATCATCCT-AACT-CCA-GTTGTGAAAAAACCGACATACTTAAGC--TCTGCA-GTGACCACAGAT--TTTGAT-------T---AAA--TGAAAGAAA-A----A-CAAA--G---T-TTTAAA-A-AA----TGAATAGTGGATAAAAATAAATAAA--TAC-ATCATTACA--ATATAT-TTATTACTTTTTCTTTGATA--T---ATT-TATTCCATTGCA-GTCGCATCGTTAATGT-CAA-T-TTCATATTTAATCTCGAATATGTAA--TTTAAA-AAATCT---TGT-CAAATTGC--AGAAGCTTACTTTCAAG-TTTA-AC-AACATAGA--TAGAG--TGAAAGC--ACC--GATAG--GTG----AAAAAC-------AAGT-CA-A-TGAGACATT-G--AA--GCT-GCGACAAGAAGTTAGAAAT-GC-TCT-CA---GGT-AAACAACCACAGA-CATT---CC-G-ATTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCA-CTAGA-ACCATCCAAAAC-TGCTGTGTTCCT-AT-CCTGCGTGTGTATTTATTTTATTTATT---C--AATAG--G-GTGAAATTA--------TTT---AT-TT-A-CTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc------------TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-ACGATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCATTTCGCT-AGCTCAT---CCG-AACTCCCATGTTGTC--GAAACC-G---AAGTCAGCCTTCCGCGCGTGC-GAGGAATAATTTAATCACTCGAT---ACA--TGAATGCAACAATTTATCAAAGTCAGATGGATAAAAA-AAAGGTTC-ATT-TAGATATGAATAAA-AAA--------T----CA--ATTT-T-TTTTTTCTTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATC-CGAAGTT-ATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACA-C----CCCTAC---TATAA-AAAAAAACACCAG-GAT---G-CAACCGCACT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGA------------------TCAACCGGGAGAATTTCAGCGATAATCTGTTAATCGGAATGTCT-GGCTGTTTT--ACCATGCGGAAAATTTCCTACCTATG-CG-ACGATTAACAACT--CTCAT-CTGACC-GTT-TTTTA----------T----CTTCGAT-AGCTCATC--CCTAAACT-CC
gi|12 : cAAAT-TT-GCA-AAAG-CGT-GAA-AGTC-AAAAGCACC---CCCG-ATTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAGGTGGG-ACC-TC---------------TACC-AT-CCTG-GT-GGTTT--GTTTT-----TTTTAT--AGTAGGGG-GTG-TATTATT-TTT--TTT---AT-TTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaCTAC--AG-AGGTCACTT-CCGGTTTTC-AC-ATCATGAAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAAA-CAAGT-GTC-CT-AATCGTC-GC-AAAGGTAG---AAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-TATT---CC-G-ATTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAGATGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT--------GTTTT-----atcattgaaataacttcagattcct
gi|14 : TT--G-AACTCCA-GTATTC--ACTTCGGAG-AG---ACTT-CTGGTGT---ACTAGCATGGAGTCCAGG-ATG--AGC----C--GC-AACTGTGGT--AAAAAG-------CTGG-AAAA-CGA----CCTGT-AATCATC-AC-AGAGATTG---GATAC-CT----------AAT-AAACAGCT-GAAA-TACC---GC-G-GTTATTGAAATAGTCGCTAAA-TCGTACAG--CCAAAC-CCAGGAATATT-T--TT
gi|15 : gggacgggaattcctTTTATATG-AAA----G-ATCATGGATATGAATAAA-AAAAACAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTC--A--TTT-ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--
gi|16 : ATAAATGAT-AAA--CAT-ATT----CC--ATAT-T-TCTTTTCTTTT---------------ATT-TATCCAGTGG-A-TTTG-CAATTTTATTT-TGC-T-TTC--ATTTAA--CTGA----GTGA--TTT--A-GAAT
gi|17 : taaaaacacacccctactaaAATAGCC-CAGA-CACT---CC-G-ATTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAGGTGGG-ACC-TCGAAAAA-TGC---GTTGCC-AT-CCTG-Gtggtcttattt
gi|18 : ccT-AAAGAGCC-GAAA-CACC---CC-G-AGTGTTGAAATCATCACTAAATTGTCCAGC--TACA-C-CAACACGTAAT-T--TTTCA----GG-ACC-CCCatt
gi|19 : gggggACAGGAATC---GAGTTTATTTC-AATAATAGAGCCTCAAAT---AAAAAAAT---TAATACACC----CCCTAC---T---ATAAAAAAAtt
gi|2 : ACAG-AGTCTTGAAGCTTTTTTC-AATAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACC----ACCTAC---T---A-AAAAAAACACCAG-GAT---GGCAAA-ACATT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGA------------------TCGACC-GGAGA-TTCTG------------TAATCGGAATGTTCTGGCTGTTTA--CCCATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-ACGACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGATGTG--AAAACCGA---AAGTAAGC--TCTGCA-GTGA-TACAGAT--TTTGAT-------T---CAA--TGAAAGTCA-A----ATCAAA--C---TGTTCAAAT--AAA-TGTG-ATCGTGG-TATAAATAAA-AAA--CATATTT----CATTTTTT-T-TTTTTACTTTTG-TTTG--A--T---ATTATATCCA-TTG-A-TTTG-AGGTTTTGTTT-TGC-TCTTC--ATTTAA--CAGAAC--GTTT--TTT--A-AAATCT--GTAT-C--ACTGC--A--AGCTTACTTTTCGGTTTTC-AC-AACATGGAGTTTGGGAATG--AGC-TATC--G--AA---TG----AACAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATC-TCAAC-ATAGGTAG---GAAATCTT-CCGCCATG-GGT--AACAGCC-CAGA-CATT---CC-G-ATTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCACGT-GG-ACC-TCCAAAAA-TGC---GTTGCCAAT-CCTG-AT-TG-----GTTTT-----TT---T--AGTAGGTT-GTG-TACTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|21 : TTTC-AATAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACA----CCCTAC---
gi|3 : ACCGG---AAGTGAGC--TCTGCA-GT---CACAGAT--TTTGAT-------TTAAAAA--TGAAAGCAA-A----ATCAAA--C---TGTTTATATA-AAA-TTTG-ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTT-A-TTTTGATTT----------ATT-TATCCAGTTG-G-TTTG-AGGTTTTATTT-TGT-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAACCCGGT-TAGA-CAAGG-GTC-GT-AATCGTT-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-GT--------GCTTT-----TT---T--AGTAGGTG-GTG-TATTATTATTT--TTTTTAAT-TT-AGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCTGCA-GT---CACAGAT--TTTGAT-------T---AAAAATGAAAGCAA-A----ATCAAA--C---TGTT--ATTATAAA-TTT--ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TT---------ATTTTG--A--T---TTA-TATCCAGTTG-G-TTTG-AGTTTTAATTT-TGT-T-TTC----TTAA--CCGA----GTGA--TTT--A-AA-TCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAC--CGGT-TAGA-CAAG---TC-GT-AATCGTT-GC-ATAGGTAG---GAA-T-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G--TG-------CTT-----TT---T--AGTAGGTGTGTATTATTATT-TTT--TTTA--AT-TT-AGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAAAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATAGCTAAA-GAA--CAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTG--A--TTT-ATT-TATCCATTTG-A-TTTG-AGGCTTTGTTT-TGC-T-TTC--ATTCAA--CCGA----ATGA--TTT--TTAAATCT--GTAT-C--CCTGC--AG-AGCTTACTTTC-GGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTATAA-AAAAAA-------CGGT-CAGA-CGAGC-GTC-GT-AATCGTC-GC-ATAGGTAG---GGAAT-TT-CCG-CATA-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-GCC-TCCAAAAA-TGC---GTTGCC-AT-CCTA-GT--------GTTTT-----TT---TTAAGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAT--T---GGTTTAAATA-AAA-TTTG-ATAGTGGATAAAAATAAA-AAA--CTC---T----C---AT-T-T-TTTTTACTTTTGTTTTGATA--T---ATT-TATCCAGTTG-ATTTTG-AGATTTTGTTT-TGCTT-TTC--ATTTAA--CCGA----ATGATTTTT--A-AAATCT--GTGT-C--ACTGC--AG-AGCTTACTTTC--GTTTTCAAC-AACACGGA-T-----------AGCTTATC--G--AA--GTG----AAAAAA-------C-GT-CAGGTTGAGA-GTT-GTAAATCGTC-GA-ATAGGTAG---GAAAT-TTCCCG-CATGTTGTAAAACAGCC-CAGA-CATTTTCCC-GAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAGGTGGGAACC-TCCAAAAG-TGC---GTTGCC-ATCCCTG-G--TG-----GTTTT-----TTTTAT--AGTGGGT--GTA-TATT-TT-TTT--TTT---AT-TTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata-CACTGAC--CTTGAT-------T---CAA--TGAAAGCAA-A----ATAAAG--C---TAATTAAGTA-AAA-TTTG-ATCATGGGTTTGAATAAA-AAA--CAC-CTC----TA--ATAT-TGTTTTTACCTTTGTTTTG--ATTT---ATT-TATCCCGTTG-A-TTTG-AAGTTTTAATT-TGC-T-TTC--ATATAA--CCGA----GTGA--TTT--A-AAATAA--TTAT-C--ACTAG--AG-GGTTCAA-TTCCGGTTCTC-AT-ATCATGAAGTTAGGG-GTG--AGC-TATC--G--TA--GTGAAAAAAAAAA-------CGGC-CAGA--AAGG-GTC-GT-AATAATT-GC-ATAGGTAG---GAAAT-TT-CAG-CATG-CAT-AAACAGCC-CAGA-CACT---C-------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAGGG-ACC-TCCAAAAG-TGC---GTTGCC-TT-TCTG-A--TG-------TTT-----TT---T--AGCAGGTG-GTG-CATAATT-TTTC-TTT---AT-CTAAGCTCTATt
gi|8 : AGAC--TTTGAT-------T---CAA--TGAAAGCAA-A-----TAAAA--C---TAGTTAAGTA-AAA-TTTT-ATCATGTGTGTGAA-AAA-AAA--CAC-CTT----TA--ATAT-T-TGTT-ACCTTTGTTTTG--A--TTTTATT-TATCCCGTTG-A-TTTG-AAGTTTTATT-----------------AA--GCGA----TTGA--TT---A-AAATCA--GTGT-C--GCTAG--AG-GGCTCACTTTTCGG--TTC-----TCA-----------------A---TATCATG--AT--GTG----A-------------GG----GA-TGAG---CT-AT-CATCGTC-GC--TAGGTAG---GAA-T-TT-CAG-CATG-CAT-TAATAGCC-CAGA-CACT---C----------AAATTACTC-CGAAATTTTCCCGT--T-------------TTAT-T--TTCAAGATGGA-ACC-TCAAAAAAATGC---GCTCCC-AT-TCTG-AT--G-----GTTTT-----T-------AGTAGATG-GTG-TATTATT-TTTTGTTT---ATCTT-AGCTCTATtactgca
gi|9 : --T---ATT-TATCCAGTTG-A-TTTG-A-ACTTCATTTCTGC-T-TTC--CTTTAA--TCGA----TTGG--TTT-----AATCTTAGTAG-C--AGTGC--AA-ATCTCAC-TTCCGGTTTTC-AC-ATCATGGAGTTCGGG-ATA--CAC-TATC--G--AA--GAG----AAAAAA-------AAGTCCAGA-AAAGG-GTT-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CGTG-GAT-AATCAGCC-CAAA-CAAT---CC-T-ATTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCA---GGA-A------AAAAA-TGC---GTTGCC-AT-GCCG-GT-GGA----GTATT-----TG---T--AGTAGG-G-ATG-TATTATC-TAT--Ttactggaaacaactgcagactcctgtggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 111 1111 11 1111 222222222 1 33333 1 111111 11 1 999999999999999999 1 555555555555 111 1 1 1 1 1 11 1 11111 4444444444 1 111 1 1 11 111 11 222 1111111 1 222222222 1111 1111 2222222 11 3333333333 111111 111 1
lowQualScore : 2 888 9 8 66 8 4444 77 7777 333333333 3 55555 77 3 888888 88 3 888888888888888888 3 3 7 111111111111 8 2 444 0 3 0 0 5 0 0 33 0 55555 3333333333 3 0 666 0 0 7 88 444 11 8 222 66 4444444 777 66 4 9999 888888 4 44 4 3 3 55 66 7777 55 0 3 3 1 2 333333333 3 3 3 3 1 3 3 3 55 55 2222 55 6666 88 4 55 55 3 8 2 3 3 0 1 2 44 55 3 55 88 55 9999 0000000 3 44 22 3 3 3 3 666 3 3 3 3 3 2 2 555 2 2 33 5555 2 4 2 33 3 3 3 44 555 3 3 3 7777777777 99999 444444 0 4 8 4 99 222 4 3
lowQualScore : . ... . . .. . .... .. .... ......... . ..... .. . ...... .. . .................. . . . ............ . . ... . . . . . . . .. . ..... .......... . . ... . . . .. ... .. . ... .. ....... ... .. . .... ...... . .. . . . .. .. .... .. . . . . . ......... . . . . . . . . .. .. .... .. .... .. . .. .. . . . . . . . . .. .. . .. .. .. .... ....... . .. .. . . . . ... . . . . . . . ... . . .. .... . . . .. . . . .. ... . . . .......... ..... ...... . . . . .. ... . .
lowQualScore : 5 222 8 0 44 0 8888 00 0000 555555555 3 00000 77 3 000000 33 3 333333333333333333 7 3 3 222222222222 8 5 000 0 2 0 0 0 0 2 88 0 22222 8888888888 2 0 222 0 0 3 33 000 00 0 111 11 4444444 888 11 4 4444 444444 0 77 0 0 6 00 55 7777 00 2 6 6 0 4 555555555 6 6 6 6 2 6 6 6 00 00 7777 00 4444 66 0 55 00 6 8 8 6 6 3 4 1 88 00 6 00 66 00 1111 9999999 6 88 55 6 6 6 6 444 3 3 3 3 1 9 9 000 9 9 99 4444 9 2 9 99 5 1 1 88 888 3 3 3 6666666666 11111 444444 7 0 0 0 55 222 4 3
consensus : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|1 : ACAGGAATCTCTGAATTAATTTCAAATAAT--AAC-TCAAAT----TAAAATAT-ATATTA-ACCCCAACCTTACTTAT---A-AATAAAACACTAGTGATTACT-CAATCGCACTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTTGTGAGATATTTTCCACT-GAAGTAATTCG------------TAATCGAAAGTTCTGGTCT-TTTC--CTCAGTCTG-AAA-TTCCTAACTATGACGAACGATT-ACAAACATCTCAC-CGAACC--------TT----------TTTCACGTCAATAAGACCATCATCCT-AACT-CCA-GTTGTGAAAAAACCGACATACTTAAGC--TCTGCA-GTGACCACAGAT--TTTGAT-------T---AAA--TGAAAGAAA-A----A-CAAA--G---T-TTTAAA-A-AA----TGAATAGTGGATAAAAATAAATAAA--TAC-ATCATTACA--ATATAT-TTATTACTTTTTCTTTGATA--T---ATT-TATTCCATTGCA-GTCGCATCGTTAATGT-CAA-T-TTCATATTTAATCTCGAATATGTAA--TTTAAA-AAATCT---TGT-CAAATTGC--AGAAGCTTACTTTCAAG-TTTA-AC-AACATAGA--TAGAG--TGAAAGC--ACC--GATAG--GTG----AAAAAC-------AAGT-CA-A-TGAGACATT-G--AA--GCT-GCGACAAGAAGTTAGAAAT-GC-TCT-CA---GGT-AAACAACCACAGA-CATT---CC-G-ATTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCA-CTAGA-ACCATCCAAAAC-TGCTGTGTTCCT-AT-CCTGCGTGTGTATTTATTTTATTTATT---C--AATAG--G-GTGAAATTA--------TTT---AT-TT-A-CTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc------------TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-ACGATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCATTTCGCT-AGCTCAT---CCG-AACTCCCATGTTGTC--GAAACC-G---AAGTCAGCCTTCCGCGCGTGC-GAGGAATAATTTAATCACTCGAT---ACA--TGAATGCAACAATTTATCAAAGTCAGATGGATAAAAA-AAAGGTTC-ATT-TAGATATGAATAAA-AAA--------T----CA--ATTT-T-TTTTTTCTTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATC-CGAAGTT-ATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACA-C----CCCTAC---TATAA-AAAAAAACACCAG-GAT---G-CAACCGCACT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGA------------------TCAACCGGGAGAATTTCAGCGATAATCTGTTAATCGGAATGTCT-GGCTGTTTT--ACCATGCGGAAAATTTCCTACCTATG-CG-ACGATTAACAACT--CTCAT-CTGACC-GTT-TTTTA----------T----CTTCGAT-AGCTCATC--CCTAAACT-CC
gi|12 : cAAAT-TT-GCA-AAAG-CGT-GAA-AGTC-AAAAGCACC---CCCG-ATTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAGGTGGG-ACC-TC---------------TACC-AT-CCTG-GT-GGTTT--GTTTT-----TTTTAT--AGTAGGGG-GTG-TATTATT-TTT--TTT---AT-TTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaCTAC--AG-AGGTCACTT-CCGGTTTTC-AC-ATCATGAAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAAA-CAAGT-GTC-CT-AATCGTC-GC-AAAGGTAG---AAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-TATT---CC-G-ATTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAGATGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT--------GTTTT-----atcattgaaataacttcagattcct
gi|14 : TT--G-AACTCCA-GTATTC--ACTTCGGAG-AG---ACTT-CTGGTGT---ACTAGCATGGAGTCCAGG-ATG--AGC----C--GC-AACTGTGGT--AAAAAG-------CTGG-AAAA-CGA----CCTGT-AATCATC-AC-AGAGATTG---GATAC-CT----------AAT-AAACAGCT-GAAA-TACC---GC-G-GTTATTGAAATAGTCGCTAAA-TCGTACAG--CCAAAC-CCAGGAATATT-T--TT
gi|15 : gggacgggaattcctTTTATATG-AAA----G-ATCATGGATATGAATAAA-AAAAACAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTC--A--TTT-ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--
gi|16 : ATAAATGAT-AAA--CAT-ATT----CC--ATAT-T-TCTTTTCTTTT---------------ATT-TATCCAGTGG-A-TTTG-CAATTTTATTT-TGC-T-TTC--ATTTAA--CTGA----GTGA--TTT--A-GAAT
gi|17 : taaaaacacacccctactaaAATAGCC-CAGA-CACT---CC-G-ATTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAGGTGGG-ACC-TCGAAAAA-TGC---GTTGCC-AT-CCTG-Gtggtcttattt
gi|18 : ccT-AAAGAGCC-GAAA-CACC---CC-G-AGTGTTGAAATCATCACTAAATTGTCCAGC--TACA-C-CAACACGTAAT-T--TTTCA----GG-ACC-CCCatt
gi|19 : gggggACAGGAATC---GAGTTTATTTC-AATAATAGAGCCTCAAAT---AAAAAAAT---TAATACACC----CCCTAC---T---ATAAAAAAAtt
gi|2 : ACAG-AGTCTTGAAGCTTTTTTC-AATAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACC----ACCTAC---T---A-AAAAAAACACCAG-GAT---GGCAAA-ACATT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGA------------------TCGACC-GGAGA-TTCTG------------TAATCGGAATGTTCTGGCTGTTTA--CCCATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-ACGACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGATGTG--AAAACCGA---AAGTAAGC--TCTGCA-GTGA-TACAGAT--TTTGAT-------T---CAA--TGAAAGTCA-A----ATCAAA--C---TGTTCAAAT--AAA-TGTG-ATCGTGG-TATAAATAAA-AAA--CATATTT----CATTTTTT-T-TTTTTACTTTTG-TTTG--A--T---ATTATATCCA-TTG-A-TTTG-AGGTTTTGTTT-TGC-TCTTC--ATTTAA--CAGAAC--GTTT--TTT--A-AAATCT--GTAT-C--ACTGC--A--AGCTTACTTTTCGGTTTTC-AC-AACATGGAGTTTGGGAATG--AGC-TATC--G--AA---TG----AACAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATC-TCAAC-ATAGGTAG---GAAATCTT-CCGCCATG-GGT--AACAGCC-CAGA-CATT---CC-G-ATTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCACGT-GG-ACC-TCCAAAAA-TGC---GTTGCCAAT-CCTG-AT-TG-----GTTTT-----TT---T--AGTAGGTT-GTG-TACTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|21 : TTTC-AATAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACA----CCCTAC---
gi|3 : ACCGG---AAGTGAGC--TCTGCA-GT---CACAGAT--TTTGAT-------TTAAAAA--TGAAAGCAA-A----ATCAAA--C---TGTTTATATA-AAA-TTTG-ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTT-A-TTTTGATTT----------ATT-TATCCAGTTG-G-TTTG-AGGTTTTATTT-TGT-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAACCCGGT-TAGA-CAAGG-GTC-GT-AATCGTT-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-GT--------GCTTT-----TT---T--AGTAGGTG-GTG-TATTATTATTT--TTTTTAAT-TT-AGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCTGCA-GT---CACAGAT--TTTGAT-------T---AAAAATGAAAGCAA-A----ATCAAA--C---TGTT--ATTATAAA-TTT--ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TT---------ATTTTG--A--T---TTA-TATCCAGTTG-G-TTTG-AGTTTTAATTT-TGT-T-TTC----TTAA--CCGA----GTGA--TTT--A-AA-TCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAC--CGGT-TAGA-CAAG---TC-GT-AATCGTT-GC-ATAGGTAG---GAA-T-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G--TG-------CTT-----TT---T--AGTAGGTGTGTATTATTATT-TTT--TTTA--AT-TT-AGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAAAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATAGCTAAA-GAA--CAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTG--A--TTT-ATT-TATCCATTTG-A-TTTG-AGGCTTTGTTT-TGC-T-TTC--ATTCAA--CCGA----ATGA--TTT--TTAAATCT--GTAT-C--CCTGC--AG-AGCTTACTTTC-GGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTATAA-AAAAAA-------CGGT-CAGA-CGAGC-GTC-GT-AATCGTC-GC-ATAGGTAG---GGAAT-TT-CCG-CATA-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-GCC-TCCAAAAA-TGC---GTTGCC-AT-CCTA-GT--------GTTTT-----TT---TTAAGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAT--T---GGTTTAAATA-AAA-TTTG-ATAGTGGATAAAAATAAA-AAA--CTC---T----C---AT-T-T-TTTTTACTTTTGTTTTGATA--T---ATT-TATCCAGTTG-ATTTTG-AGATTTTGTTT-TGCTT-TTC--ATTTAA--CCGA----ATGATTTTT--A-AAATCT--GTGT-C--ACTGC--AG-AGCTTACTTTC--GTTTTCAAC-AACACGGA-T-----------AGCTTATC--G--AA--GTG----AAAAAA-------C-GT-CAGGTTGAGA-GTT-GTAAATCGTC-GA-ATAGGTAG---GAAAT-TTCCCG-CATGTTGTAAAACAGCC-CAGA-CATTTTCCC-GAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAGGTGGGAACC-TCCAAAAG-TGC---GTTGCC-ATCCCTG-G--TG-----GTTTT-----TTTTAT--AGTGGGT--GTA-TATT-TT-TTT--TTT---AT-TTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata-CACTGAC--CTTGAT-------T---CAA--TGAAAGCAA-A----ATAAAG--C---TAATTAAGTA-AAA-TTTG-ATCATGGGTTTGAATAAA-AAA--CAC-CTC----TA--ATAT-TGTTTTTACCTTTGTTTTG--ATTT---ATT-TATCCCGTTG-A-TTTG-AAGTTTTAATT-TGC-T-TTC--ATATAA--CCGA----GTGA--TTT--A-AAATAA--TTAT-C--ACTAG--AG-GGTTCAA-TTCCGGTTCTC-AT-ATCATGAAGTTAGGG-GTG--AGC-TATC--G--TA--GTGAAAAAAAAAA-------CGGC-CAGA--AAGG-GTC-GT-AATAATT-GC-ATAGGTAG---GAAAT-TT-CAG-CATG-CAT-AAACAGCC-CAGA-CACT---C-------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAGGG-ACC-TCCAAAAG-TGC---GTTGCC-TT-TCTG-A--TG-------TTT-----TT---T--AGCAGGTG-GTG-CATAATT-TTTC-TTT---AT-CTAAGCTCTATt
gi|8 : AGAC--TTTGAT-------T---CAA--TGAAAGCAA-A-----TAAAA--C---TAGTTAAGTA-AAA-TTTT-ATCATGTGTGTGAA-AAA-AAA--CAC-CTT----TA--ATAT-T-TGTT-ACCTTTGTTTTG--A--TTTTATT-TATCCCGTTG-A-TTTG-AAGTTTTATT-----------------AA--GCGA----TTGA--TT---A-AAATCA--GTGT-C--GCTAG--AG-GGCTCACTTTTCGG--TTC-----TCA-----------------A---TATCATG--AT--GTG----A-------------GG----GA-TGAG---CT-AT-CATCGTC-GC--TAGGTAG---GAA-T-TT-CAG-CATG-CAT-TAATAGCC-CAGA-CACT---C----------AAATTACTC-CGAAATTTTCCCGT--T-------------TTAT-T--TTCAAGATGGA-ACC-TCAAAAAAATGC---GCTCCC-AT-TCTG-AT--G-----GTTTT-----T-------AGTAGATG-GTG-TATTATT-TTTTGTTT---ATCTT-AGCTCTATtactgca
gi|9 : --T---ATT-TATCCAGTTG-A-TTTG-A-ACTTCATTTCTGC-T-TTC--CTTTAA--TCGA----TTGG--TTT-----AATCTTAGTAG-C--AGTGC--AA-ATCTCAC-TTCCGGTTTTC-AC-ATCATGGAGTTCGGG-ATA--CAC-TATC--G--AA--GAG----AAAAAA-------AAGTCCAGA-AAAGG-GTT-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CGTG-GAT-AATCAGCC-CAAA-CAAT---CC-T-ATTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCA---GGA-A------AAAAA-TGC---GTTGCC-AT-GCCG-GT-GGA----GTATT-----TG---T--AGTAGG-G-ATG-TATTATC-TAT--Ttactggaaacaactgcagactcctgtggt
blockSeqs : G TTG T . TA C TTAA AG . TATAA . GG CC . GGTCC . A . A G A GCGATAATCTGT G G CAC A T . . G A . T GGTTG CTGTTTTTTT T . C A C T . . CT C GC AA CACTCGA TAA AA C ATTT GTCAGA T GG . A . AA AT . TT . G T T ATTTT A . T . G C T C . . AC TT TT TA T . GG . T C A T G A AA . T AT C CT AAAA AAAAACC C TT T T A A . . C C C T A . G TTC C A . CGAT T T . . G A . AA . A C . TGGTTTG . TTAT T T A TG TTA C G
blockSeqs : G CG T . TA . A A . TAT . G A . AGTC . . . G . . . T G T . T . . . . . . GTTG . T . C . . T . . . . GA . . . . . . C . T . G . . C . . . . T A ATTT . . . . A . . . . . . . G A . . . . T T . . G C A . . . . . TAA AAAAC . C G . . . . . . . . . . . . . . . . TGAT . T . . G . . A . . . . TGGAG . TTAT . . . C A . G
blockSeqs : . . . . TA . A G . TA . . G A . T . . . . . . GTT . . . . . . . . . . . . . . . . C . T . A . . A . . . . T T ATTT . . . . G . . . . . . . A . . . . . T C . . G T A . . . . . GT . . C G . . . . . . . . . . . . . . . . CAAA . G . . G . . A . . . . TTGG . TTA . . . . . . A
blockSeqs : . . . A . . . . . . . . . . . . C . T . A . . C . . . . T T ATAT . . . . G . . . . . . . A . . . . . T C . . G A A . . . . . . . . C C . . . . . . . . . . . . . . . . CGAT . T . . C . . A . . . . TGG . T . . . . . . .
blockSeqs : . . . . . . C . T . G . . C . . . . T T ATTT . . . . G . . . . . . . A . . . . . T C . . G A A . . . . . . . . C A . . . . . . . . . . . . . . . . CGAT . C . . G . . C . . . . TGG . T . . . . . . .
blockSeqs : . . . . . . T . T . G . . C . . . . . T AT . . . . G . . . . . . . A . . . . . T C . . G A A . . . . . . . . C G . . . . . . . . . . . . . . . . CGAT . T . . G . . C . . . . TG . T . . . . . . .
blockSeqs : . . . . . . C . T . A . . C . . . . . T AT . . . . G . . . . . . . A . . . . . . C . . G A G . . . . . . . . C G . . . . . . . . . . . . . . . . CGAT . T . . G . . A . . . . TG . T . . . . . . .
blockSeqs : . . . . . . C . T . A . . C . . . . . . . . . . . A . . . . . . . A . . . . . . C . . G C A . . . . . . . . T . . . . . . . . . . . . . . . . . CGAT . T . . G . . G . . . . TG . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . . . . . . . A . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . ACA . T . . G . . G . . . . TG . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TG . T . . G . . A . . . . TG .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : TA A*** **** *** G** T* **** ** ** **** A*** ** A* ** ** G* *** ** ** *** TGG******* *****
originalCons : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTGA-CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GT-TG-----GTTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
finalCons : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAATA---AAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTG--CACAGAT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAAT-TTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTTA---AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGGA-TG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-GTGG-------TTTT-----TT---T--AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC
Alignments
lowQualScore : 111 1111 11 1111 222222222 1 33333 1 111111 11 1 999999999999999999 1 555555555555 111 1 1 1 1 1 11 1 11111 4444444444 1 111 1 1 11 111 11 222 1111111 1 222222222 1111 1111 2222222 11 22222222 11111 111111 111 1
lowQualScore : 2 888 9 8 66 8 4444 77 7777 333333333 3 55555 77 3 888888 88 3 888888888888888888 3 3 7 111111111111 8 2 444 0 3 0 0 5 0 0 33 0 55555 3333333333 3 0 666 0 0 7 88 444 11 8 555 66 66 4444444 777 66 4 9999 888888 4 44 4 3 3 55 66 7777 55 0 3 3 1 2 333333333 3 3 3 3 1 3 3 3 55 55 2222 55 6666 88 4 55 55 3 8 2 3 3 0 1 2 44 55 3 55 88 55 9999 0000000 3 44 22 3 3 3 3 666 3 3 3 3 3 2 2 555 2 2 33 5555 2 4 2 33 3 3 3 44 555 3 3 3 3 11111111 3 00000 888888 4 0 4 8 4 99 222 4 3
lowQualScore : . ... . . .. . .... .. .... ......... . ..... .. . ...... .. . .................. . . . ............ . . ... . . . . . . . .. . ..... .......... . . ... . . . .. ... .. . ... .. .. ....... ... .. . .... ...... . .. . . . .. .. .... .. . . . . . ......... . . . . . . . . .. .. .... .. .... .. . .. .. . . . . . . . . .. .. . .. .. .. .... ....... . .. .. . . . . ... . . . . . . . ... . . .. .... . . . .. . . . .. ... . . . . ........ . ..... ...... . . . . . .. ... . .
lowQualScore : 5 222 8 0 44 0 8888 00 0000 555555555 3 00000 77 3 000000 33 3 333333333333333333 7 3 3 222222222222 8 5 000 0 2 0 0 0 0 2 88 0 22222 8888888888 2 0 222 0 0 3 33 000 00 0 888 99 11 4444444 888 11 4 4444 444444 0 77 0 0 6 00 55 7777 00 2 6 6 0 4 555555555 6 6 6 6 2 6 6 6 00 00 7777 00 4444 66 0 55 00 6 8 8 6 6 3 4 1 88 00 6 00 66 00 1111 9999999 6 88 55 6 6 6 6 444 3 3 3 3 1 9 9 000 9 9 99 4444 9 2 9 99 5 1 1 88 888 3 3 3 3 99999999 6 00000 555555 0 7 0 0 0 55 222 4 3
consensus : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTG--CACAG--AT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-G-TG-------GTTT-T-----TT------T-AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
Reference ( family-2973 ) : ACAGGAATCTCGGAGTTTATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACACC----CCCTAC---T---A-AAAAAAACACCAG-GAT---G-CAANCGCACT-TTGGAGGT-C-CACCTG--GAAAATTATTT-ATTGGA------------------TCGACC-GGAGAATTTCG------------TAATCGGAATGTCTGGGCTGTTTC--CCCATGCGG-AAATTTCCTACCTATG-CG-ACGATT-ACGACC--CTCAT-CTGACC-GTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGTTGTG--AAAACCGG---AAGTAAGC--TCTGCA-GTG--CACAG--AT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTTTACTTTTGTTTTG--A--T---ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTTTCCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CACT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-G-TG-------GTTT-T-----TT------T-AGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|1 : ACAGGAATCTCTGAATTAATTTCAAATAAT--AAC-TCAAAT----TAAAATAT-ATATTA-ACCCCAACCTTACTTAT---A-AATAAAACACTAGTGATTACT-CAATCGCACTATTGGA--T-CACACCTGTAGAAAATTATTT-ATTGGAGCAACTTGTGAGATATTTTCCACT-GAAGTAATTCG------------TAATCGAAAGTTCTGGTCT-TTTC--CTCAGTCTG-AAA-TTCCTAACTATGACGAACGATT-ACAAACATCTCAC-CGAACC--------TT----------TTTCACGTCAATAAGACCATCATCCT-AACT-CCA-GTTGTGAAAAAACCGACATACTTAAGC--TCTGCA-GTGACCACAG--AT--TTTGAT-------T---AAA--TGAAAGAAA-A----A-CAAA--G---T-TTTAAA-A-AA----TGAATAGTGGATAAAAATAAATAAA--TAC-ATCATTACA--ATATAT-TTATTACTTTTTCTTTGATA--T---ATT-TATTCCATTGCA-GTCGCATCGTTAATGT-CAA-T-TTCATATTTAATCTCGAATATGTAA--TTTAAA-AAATCT---TGT-CAAATTGC--AGAAGCTTACTTTCAAG-TTTA-AC-AACATAGA--TAGAG--TGAAAGC--ACC--GATAG--GTG----AAAAAC-------AAGT-CA-A-TGAGACATT-G--AA--GCT-GCGACAAGAAGTTAGAAAT-GC-TCT-CA---GGT-AAACAACCACAGA-CATT---CC-G-ATTACAATATTACTCGTG-AATTCGTCCAGCTTCATTC-CAG-AAATAATGTAGTTCCA-CTAGA-ACCATCCAAAAC-TGCTGTGTTCCT-AT-CCTGCG-TGTGTATTTATTT-TATTTATT------C-AATAG--G-GTGAAATTA--------TTT---AT-TT-A-CTCTAT
gi|10 : aaaaaaactgaattacataaaacaataatgcacactaaagtcacaatgcgtatcaacc------------TAATCGGAATGTTTGGGCTGTCTCACCTCATGCGG-AAATTCCTTACCTGTG-CG-AC-ATT-ACGATC--CTAATTCTGGCC-GTTGTTTTTCTGTTTTTTTTTTCATTTCGCT-AGCTCAT---CCG-AACTCCCATGTTGTC--GAAACC-G---AAGTCAGCCTTCCGCGCGTG--CG-AGGAATAATTTAATCACTCGAT---ACA--TGAATGCAACAATTTATCAAAGTCAGATGGATAAAAA-AAAGGTTC-ATT-TAGATATGAATAAA-AAA--------T----CA--ATTT-T-TTTTTTCTTtattgaattagaaacacttcagaat
gi|11 : ACAGGAATC-CGAAGTT-ATTTC-AATAATAGAGC-TCAAAT---AAAAAAAAA-ATAATACA-C----CCCTAC---TATAA-AAAAAAACACCAG-GAT---G-CAACCGCACT-TTGGAGGTCC-CACCTG--GAAAATTATTTAATTGGA------------------TCAACCGGGAGAATTTCAGCGATAATCTGTTAATCGGAATGTCT-GGCTGTTTT--ACCATGCGGAAAATTTCCTACCTATG-CG-ACGATTAACAACT--CTCAT-CTGACC-GTT-TTTTA----------T----CTTCGAT-AGCTCATC--CCTAAACT-CC
gi|12 : cAAAT-TT-GCA-AAAG-CGT-GAA-AGTC-AAAAGCACC---CCCG-ATTACAGAATTACTCGCGAAATTCTGCCGG--TCGATC-CAGTAAATAAT-T--TTCCAGGTGGG-ACC-TC---------------TACC-AT-CCTG-G-TG-------GTTTGT-----TTTTTTTAT-AGTAGGGG-GTG-TATTATT-TTT--TTT---AT-TTGAGCTCTAT
gi|13 : gtgaaattcaacaccaatgcggaaatcaaatcaaatcacaggaagacgaaaCTAC--AG-AGGTCACTT-CCGGTTTTC-AC-ATCATGAAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AAAAAA-------CGGT-CAAA-CAAGT-GTC-CT-AATCGTC-GC-AAAGGTAG---AAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-TATT---CC-G-ATTACAGAATTACTCGCGAAATTATCCCGG--TTGATC-CAATAAATAAT-T--TTCTAGATGGG-ACC-TCCAAAAA-TGC---GTTGCC-AT-CCTG-G-TG-------TTTT-atcattgaaataacttcagattcct
gi|14 : TT--G-AACTCCA-GTATTC--ACTTCGGAG-AG---ACTT-CTGGTGT---ACTAGCATGGAGTCCAGG-ATG--AGC----C--GC-AACTGTGGT--AAAAAG-------CTGG-AAAA-CGA----CCTGT-AATCATC-AC-AGAGATTG---GATAC-CT----------AAT-AAACAGCT-GAAA-TACC---GC-G-GTTATTGAAATAGTCGCTAAA-TCGTACAG--CCAAAC-CCAGGAATATT-T--TT
gi|15 : gggacgggaattcctTTTATATG-AAA----G-ATCATGGATATGAATAAA-AAAAACAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTC--A--TTT-ATT-TATCCAGTTG-A-TTTG-AGGTTTTATTT-TGC-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--
gi|16 : ATAAATGAT-AAA--CAT-ATT----CC--ATAT-T-TCTTTTCTTTT---------------ATT-TATCCAGTGG-A-TTTG-CAATTTTATTT-TGC-T-TTC--ATTTAA--CTGA----GTGA--TTT--A-GAAT
gi|17 : taaaaacacacccctactaaAATAGCC-CAGA-CACT---CC-G-ATTACAGAATTTCTCGCGACATTCACCCGG--TCGATC-AAATACATAAT-T--TTCCAGGTGGG-ACC-TCGAAAAA-TGC---GTTGCC-AT-CCTG-G-tggtcttattt
gi|18 : ccT-AAAGAGCC-GAAA-CACC---CC-G-AGTGTTGAAATCATCACTAAATTGTCCAGC--TACA-C-CAACACGTAAT-T--TTTCA----GG-ACC-CCCatt
gi|19 : gggggACAGGAATC---GAGTTTATTTC-AATAATAGAGCCTCAAAT---AAAAAAAT---TAATACACC----CCCTAC---T---ATAAAAAAAtt
gi|2 : ACAG-AGTCTTGAAGCTTTTTTC-AATAA--GAGC-T-AAATTTAAAAAAAAAG-ATAGTACACC----ACCTAC---T---A-AAAAAAACACCAG-GAT---GGCAAA-ACATT-TTGGGAGT-C-CACCTG--GAAAATTAATT-ATTGGA------------------TCGACC-GGAGA-TTCTG------------TAATCGGAATGTTCTGGCTGTTTA--CCCATGCGG-AAATTTCCTACCTATA-CG-AC-ATT-ACGACC--CTCGT-CTGACCGGTTGTTTTT----------TTTCACTTCGAT-AGCTCATC--CCT-AACT-CCATGATGTG--AAAACCGA---AAGTAAGC--TCTGCA-GTGA-TACAG--AT--TTTGAT-------T---CAA--TGAAAGTCA-A----ATCAAA--C---TGTTCAAAT--AAA-TGTG-ATCGTGG-TATAAATAAA-AAA--CATATTT----CATTTTTT-T-TTTTTACTTTTG-TTTG--A--T---ATTATATCCA-TTG-A-TTTG-AGGTTTTGTTT-TGC-TCTTC--ATTTAA--CAGAAC--GTTT--TTT--A-AAATCT--GTAT-C--ACTGC--A--AGCTTACTTTTCGGTTTTC-AC-AACATGGAGTTTGGGAATG--AGC-TATC--G--AA---TG----AACAAA-------CGGT-CAGA-CGAGG-GTC-GT-AATC-TCAAC-ATAGGTAG---GAAATCTT-CCGCCATG-GGT--AACAGCC-CAGA-CATT---CC-G-ATTACAAAATTAATCGCGAAATTCTCCCGG--TCGATC-CAA-AAATAAT-T--TTCCACGT-GG-ACC-TCCAAAAA-TGC---GTTGCCAAT-CCTG-ATTG-------GTTT-T-----TT------T-AGTAGGTT-GTG-TACTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|21 : TTTC-AATAATAGAGC-TCAAAT---AAAAAAAAAGATAATACACA----CCCTAC---
gi|3 : ACCGG---AAGTGAGC--TCTGCA-GT---CACAG--AT--TTTGAT-------TTAAAAA--TGAAAGCAA-A----ATCAAA--C---TGTTTATATA-AAA-TTTG-ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TTTT-A-TTTTGATTT----------ATT-TATCCAGTTG-G-TTTG-AGGTTTTATTT-TGT-T-TTC--ATTTAA--CCGA----GTGA--TTT--A-AAATCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAACCCGGT-TAGA-CAAGG-GTC-GT-AATCGTT-GC-ATAGGTAG---GAAAT-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G-T--------GCTT-T-----TT------T-AGTAGGTG-GTG-TATTATTATTT--TTTTTAAT-TT-AGCTCTAT
gi|4 : tcacagcagtctgacgttttttcaataACCGG---AAGTAGAC--TCTGCA-GT---CACAG--AT--TTTGAT-------T---AAAAATGAAAGCAA-A----ATCAAA--C---TGTT--ATTATAAA-TTT--ATCATGGATATGAATAAA-AAA--CAC-CTT----CA--ATAT-T-TT---------ATTTTG--A--T---TTA-TATCCAGTTG-G-TTTG-AGTTTTAATTT-TGT-T-TTC----TTAA--CCGA----GTGA--TTT--A-AA-TCT--GTAT-C--ACTGC--AG-AGCTCACTT-CCGGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTG----AGAAAAAAAAC--CGGT-TAGA-CAAG---TC-GT-AATCGTT-GC-ATAGGTAG---GAA-T-TT-CCG-CATG-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TT-CAGGTGAG-ACC-TCCAAAAC-TGC---GTTGCC-AT-CCTG-G-TG---------CT-T-----TT------T-AGTAGGTGTGTATTATTATT-TTT--TTTA--AT-TT-AGCTCTAT
gi|5 : tcacagcagtctgccgttttttcaataAA--AT--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAA--C---TGTTTAAATA-AAA-TTTG-ATCGTGGATATAGCTAAA-GAA--CAT-CTT----CA--ATAT-T-TTTT-ACTTTTGTTTTG--A--TTT-ATT-TATCCATTTG-A-TTTG-AGGCTTTGTTT-TGC-T-TTC--ATTCAA--CCGA----ATGA--TTT--TTAAATCT--GTAT-C--CCTGC--AG-AGCTTACTTTC-GGTTTTC-AC-ATCATGGAGTTAGGG-ATG--AGC-TATC--G--AA--GTATAA-AAAAAA-------CGGT-CAGA-CGAGC-GTC-GT-AATCGTC-GC-ATAGGTAG---GGAAT-TT-CCG-CATA-GGT-AAACAGCC-CAGA-CATT---CC-G-ATTACAGAATTACTCGCGAAATTCTCCCGG--TCGATC-CAATAAATAAT-T--TTCCAGGTGGG-GCC-TCCAAAAA-TGC---GTTGCC-AT-CCTA-G-TG-------TTTT-T-----TT------TAAGTAGGTG-GTG-TATTATT-TTT--TTT---AT-TT-AGCTCTAT
gi|6 : cagaagtctgaagttttttcaata--TTTGAT-------T---AAA--TGAAAGCAA-A----ATCAAT--T---GGTTTAAATA-AAA-TTTG-ATAGTGGATAAAAATAAA-AAA--CTC---T----C---AT-T-T-TTTTTACTTTTGTTTTGATA--T---ATT-TATCCAGTTG-ATTTTG-AGATTTTGTTT-TGCTT-TTC--ATTTAA--CCGA----ATGATTTTT--A-AAATCT--GTGT-C--ACTGC--AG-AGCTTACTTTC--GTTTTCAAC-AACACGGA-T-----------AGCTTATC--G--AA--GTG----AAAAAA-------C-GT-CAGGTTGAGA-GTT-GTAAATCGTC-GA-ATAGGTAG---GAAAT-TTCCCG-CATGTTGTAAAACAGCC-CAGA-CATTTTCCC-GAATTACAGAATTACTCGTGAAATTCTCCCAG--T---TCTCAATTAATAAT-T--TTCCAGGTGGGAACC-TCCAAAAG-TGC---GTTGCC-ATCCCTG-G-TG-------GTTT-T-----TTTTA---T-AGTGGGT--GTA-TATT-TT-TTT--TTT---AT-TTGAGCTCTATaa
gi|7 : aaggaatctgaagttatttacaata--CACTG--AC--CTTGAT-------T---CAA--TGAAAGCAA-A----ATAAAG--C---TAATTAAGTA-AAA-TTTG-ATCATGGGTTTGAATAAA-AAA--CAC-CTC----TA--ATAT-TGTTTTTACCTTTGTTTTG--ATTT---ATT-TATCCCGTTG-A-TTTG-AAGTTTTAATT-TGC-T-TTC--ATATAA--CCGA----GTGA--TTT--A-AAATAA--TTAT-C--ACTAG--AG-GGTTCAA-TTCCGGTTCTC-AT-ATCATGAAGTTAGGG-GTG--AGC-TATC--G--TA--GTGAAAAAAAAAA-------CGGC-CAGA--AAGG-GTC-GT-AATAATT-GC-ATAGGTAG---GAAAT-TT-CAG-CATG-CAT-AAACAGCC-CAGA-CACT---C-------GCAAAATTACTAGCGAAATTCTCCCGG--TTG-------------AT-T--TTCAAGAAGGG-ACC-TCCAAAAG-TGC---GTTGCC-TT-TCTG-A-TG---------TT-T-----TT------T-AGCAGGTG-GTG-CATAATT-TTTC-TTT---AT-CTAAGCTCTATt
gi|8 : AG--AC--TTTGAT-------T---CAA--TGAAAGCAA-A-----TAAAA--C---TAGTTAAGTA-AAA-TTTT-ATCATGTGTGTGAA-AAA-AAA--CAC-CTT----TA--ATAT-T-TGTT-ACCTTTGTTTTG--A--TTTTATT-TATCCCGTTG-A-TTTG-AAGTTTTATT-----------------AA--GCGA----TTGA--TT---A-AAATCA--GTGT-C--GCTAG--AG-GGCTCACTTTTCGG--TTC-----TCA-----------------A---TATCATG--AT--GTG----A-------------GG----GA-TGAG---CT-AT-CATCGTC-GC--TAGGTAG---GAA-T-TT-CAG-CATG-CAT-TAATAGCC-CAGA-CACT---C----------AAATTACTC-CGAAATTTTCCCGT--T-------------TTAT-T--TTCAAGATGGA-ACC-TCAAAAAAATGC---GCTCCC-AT-TCTG-A-TG-------GTTT-T-----T---------AGTAGATG-GTG-TATTATT-TTTTGTTT---ATCTT-AGCTCTATtactgca
gi|9 : --T---ATT-TATCCAGTTG-A-TTTG-A-ACTTCATTTCTGC-T-TTC--CTTTAA--TCGA----TTGG--TTT-----AATCTTAGTAG-C--AGTGC--AA-ATCTCAC-TTCCGGTTTTC-AC-ATCATGGAGTTCGGG-ATA--CAC-TATC--G--AA--GAG----AAAAAA-------AAGTCCAGA-AAAGG-GTT-GT-AATCGTC-GC-ATAGGTAG---GAAAT-TT-CCG-CGTG-GAT-AATCAGCC-CAAA-CAAT---CC-T-ATTTCAAAATCTCTAGCGAAATT----------------CAATACATAAT-T--TTGCA---GGA-A------AAAAA-TGC---GTTGCC-AT-GCCG-G-TGGA-----GTAT-T-----TG------T-AGTAGG-G-ATG-TATTATC-TAT--Ttactggaaacaactgcagactcctgtggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAACCTTGCACACACAAATGAAGGTAGCTCACGTATAAAATGAAATCTGCACTGTATACTAGAC