lowQualScore : 1111111111111111111111111 11111111111111111111111111111111111 1111111111111111111111111111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 111 5555555555555555555555555 1 11111 111 33 2222 1 222222222222 22222 33 1111 44444444444444444444444444444444444444 11111111111111111111111111111111111 555555 2222222 1 2222222222222222222222222222222222222222222 1 2 777777 2 99999999999999999 11 1 22 1 1 666666 1 55555 7777777 22222222 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 444 1 11 1 22 11 4
lowQualScore : 6 6 5 000 5 1111111111111111111111111 5 8 3 5 0 5 5 5 3 77777 5 55 5 5 4 3 666 11 888 0 66 6666 5 0 444444444444 6 11111 5 666 4 5 5 5 00 5 5 777 6 888 22 5 888 4 1 1 5 5 4444 33333333333333333333333333333333333333 5 1 2 5 99999999999999999999999999999999999 555555 0 5555555 6 5 4444444444444444444444444444444444444444444 5 8 0 666666 6 1 6 33333333333333333 6 22 6 6 6 7 6 11 5 5 6 111111 6 7 11111 6 6 6 1111111 6 8 44444444 6 8 6 6 1 1 11 0 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 111 6 7 6 99 55 1 88 5 11 22 0 6 6
lowQualScore : . . . ... . ......................... . . . . . . . . . ..... . .. . . . . ... .. ... . .. .... . . ............ . ..... . ... . . . . .. . . ... . ... .. . ... . . . . . .... ...................................... . . . . ................................... ...... . ....... . . ........................................... . . . ...... . . . ................. . .. . . . . . .. . . . ...... . . ..... . . . ....... . . ........ . . . . . . .. . . ............................................................................................................................................................................................................... . ... . . . .. .. . .. . .. .. . . .
lowQualScore : 7 7 7 000 7 7777777777777777777777777 7 7 0 1 0 0 0 0 0 55555 7 66 0 0 0 6 444 99 888 1 44 4444 0 0 000000000000 0 11111 0 222 0 0 0 0 55 0 0 444 6 888 99 0 888 4 8 4 0 0 9999 44444444444444444444444444444444444444 0 4 8 0 66666666666666666666666666666666666 000000 6 8888888 0 0 1111111111111111111111111111111111111111111 5 8 0 777777 7 0 7 33333333333333333 0 00 0 0 0 0 0 00 0 0 0 555555 0 0 00000 0 0 0 0000000 0 3 77777777 0 3 0 0 0 0 77 7 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 000 0 0 0 77 77 0 00 0 00 00 0 0 0
consensus : AGG-CTGAAGC-TAGCAGCCAC-TAAC---C-AGCAGCCAATA---AG--CCCNTAGA--A-GCTAGCAGCCANTTAGG-AAAAT-CAT-CG-AAGNACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTG--AAACCA-TTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATG-TTT-CGAA----T-TAATAAATGTCAAT----AAC-AACACGCATGAACAACTT-AG-CTCA-CATGGGAGAGTTACG-C-TTTAATCGNA-AATTGA---ATNCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TGT--AC---TGTTCAT--TTCATTATCAATTTTAATAATTTTTAACA-----ATT-ATTT-----TG-CCGAC-CT-ACATGTAAGTAAAT-----GCACATTGATA------ATTTAGCTCACTTGAATA----TNATTAT--TTNGTA----A---AT-N------A-----AGTAACAATGAATAGATTTACATTATGGGGAAAACAATATTATTTGGGATTGCTTATTATCTCA-----------------ATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATTCTCTCTTGAAGTTTAATTAACAATTGTCTTCCCATAAAAGAAATCAA--AAAAGATATC--TTTT--GAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTAT-CTGA-GGAGTGA----TTG--GTA-----------TTTCTAACTAAGGAAGTGGGCCGAT-TTAT-AA---------ATT-------TTGA----T--G---ACATNTNGN---ATANC-T-CGCA--ATA-AT-----------------TC--T-------T----TTCTCGC-TGATAT--------------------TGATGACAAGGCAGAGCAAATGATGG-AACAAGTTAGGTAACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
Reference ( gi|1 ) : AGG-CTGAAGC-TAGCAGCCAC-TAAC---C-AGC------CA---AA--CC--------A-GCTAGCAGTCACTTAAG-AAAAT-CAT-CA-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TCTAATTTT--AAACC--TTTTT---AAAGGAAATTTT--TAAATTGAAT-TCATG-TTT-C-AA----T-AAATAAATGCCAAT----AAC-AACACACATGAACAACCT-AG-CTCA-CATGGGAGAGTTACA-C-TTTAATCGTG-AATTGA---ATGTAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--TGTAAAAT-----TG---AC---TTCTCAT--TTCATTATC-----TAATCATTCTGAACA-----A-----TT-----CG-C--AC-C--ATATATAAGTAAA------GTACATTGATA------GTTTAGTTCACGTGAATA----TT-TTAT--TTCGTA----A---AT-G------A-----AGTAACAATGAATAGATTTATATGAT-GGGAAAACAATAT------GGATGGTTTATTAT-TCA-----------------ATTTCCATATGTCGATCCTTATGGAATTGTATTGCGTTCCAACCTGTTTTCTGTAAATCAA-CTGACCTGAAGATTAATTCCCAATTATCTTTCCACAAAAGAAAACAACAAAAAAAAATC--TTGT--GAAAAAGTATTATAAGGAAAATAATTAAATAATGAAATAAACACTTCCTCTGTA--AT-CTTG-GTAGTAAGTAGTTG--GTATTAGATGCCTCTTTCTAACTAAAGAAATAGGCT-ATTGTATCAA--------TATT-------CTGA----T--G---ATATATAGT---ACAGTAT-CACA--ATA-AT-----------------TC--T-------T----TTCTCGC-TAATGTA-------------------TGATGACAAGGCAGAGCAAATAAT-A-AATAAGATGGGCGACGGCTATGCTAGCTGATCATTTCTCAATTAAGTTCAAGGACACTCTAGAAG
gi|5 : AGG-CTGAAGC-TAGCAGCCAC-TAAC---C-AGCAGCCAATA---AG--CCCTTAGA--A-GCTAGCAGCCACTAAGG-AAAAC-CAT-CA-AAGGACT-----GAGAGTACTC-ATAGAAAAAT-A-TCTAATTTA--AAACCA-CTTTT---AAAGGCAATTTT--C-AATTGAAT-TCATG-TTT-TGAA----T-TAATAAATGTCAAT----AAC-AACAAGCATGAACAACTT-AG-CTCA-CATGGGAG-TTTACA-C-TTTAATTGTG-AATTGA---ATTCAT-ATCA---GAACTTTGCAATG-A-ATGTTGG-A-AGCA--AATAAAAT-----TG---AC---CACTCTT--TTCATTTTC-----TAATCGTTTTGAATA-----ATTAATTT-----TG-CT-AC-C---T---TAAGTAAAT-----GCACATTGATA------ATTTAACGCACCTGATTA----TTATTAT--TTAGT
gi|10 : AGG-CTGAAGC-TAGCAGCCAC-TAAC---C-AGCAGTCAATA---AG--CCCGTAGA--A-GCTAGCAACCAATAAGG-AAAAT-CAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-ATTTTAATTTG--AAACCA-TTTTT---AAAGG-AATTTT--TTAATAGAAT-TCATGTTTT-C-AA----T-TATTAAATGTCAAT------------------AACAACTT-AG-CTCA-CATGGGA-AGTTACG-C-TTTAATCGAA-AATTGAATCATGTAT-ATCA---GTAATTTGTAATGAA-ATGcgttaagaaacgtcgaa
gi|7 : ccAGGTCTGAAGC-TAGCAGCCAC-TAAC---C-AGCAGCCT-TA---AGATCCGAGA----A-GCTAGCAGCCAAT-AGG-AAAAT-CATTCG-AAGTACTC----GAAAG-GCTCCATAGAAAAATTA-TTTA-TTGTGAAAACC--ATTTT---CAAGGAACTTTTATCAGATTAAAC-TCATG-TTTTC-AA----TTAAGTAAATGTCAAT----AAC-ACCAC---TGAACAATCTTAG-CTCA-CATGGGA-AGTTACAGC-TTTAATCGCA-AAT-GA---ATGCAT-ATCA---GTAATTTGTAA-GAATATGTGTA-A-AGCA--TATAAAAG-----TAT--AC---TGTTCAT--TTCATTAT
gi|13 : ccAGG-CTGAAGC-TAGCAGCCAC-TAAC---C-AGCAGCCAATA---AG--CCCATAGA--A-GCTAGCAGCCAATAAGG-AAAAT-CAT-CG-AAGTACTACCTGGAAAGTatccactt
gi|16 : cattcattatttgttcagcttgtataatgtacttcaatatattgtagaaaataaagtatgacactctaagaccAGG-CTGAAGC-TAGCAGCCAC-TAA----C-AGCAAAATTTA---AA--CC--------A---TAAT-GTCATTTAAgttttgtatttctaaacaa
gi|6 : attGG-CTGAAGCCTAGCAGCCACTTAACCAGC-AGC------CATTCAG--CCGCGTAGAAA-GCTGCCAG-CACATAAG-AAAAT-CAT-CGCAAGTAC------GTAAGTA-TC-ATTG-AAAAT-A-TTTATTTGA--AAACCAATTCTTCCCAAAGGAA--TTT--TCAATTAAAC-TCATGTTTT-C-AA----T-TAA-AAATGTCAATAGCAAAC-AACACACGAGAACAGCTT-AGTCTCACCATGGGA-AGTT-CG-CATTTAA-CGAGTAATGAA---ATGCATAATCATCTATAATTTGTAATGAA-ATCTTAGTACAGCAAGTGTAAGAT-----
gi|15 : cc-TAAC---CCGGT------TA---GG--CC--------ATGCAAGCAGCCACCTAGG-AAAAAACAT-CA-AAGGCCT-----GAGAGTACTaatactgtcatataacactctatacgt
gi|2 : agTAAGCAAAGT-CAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTG--AAAACA-TTTCT---AAAGGAAATTTG---GAATTGGAT-ACATG-TTT-TGAA----T-TAATAAATGTCAAT----TGC-AACACATATGAGCAACTT-AA-CTTA-CATGGGAG---TACA-C-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGAA-A----------ACA--AATAAAAT-----TG---ACAACTTTTT-T--TTTAATACCAATTTTAATAAATTTTAACA-----A-----TTACATTTG-CCGAC-TT-ACATGTAATTAAAT-----GCACAGTGATA------ATTTAGCTCAGTTGAATACCGGTA-TCATAATCTATA----ATCAAT--------A-----AGTAACAATGAATAGA-TTACATTATAGGGAAAACAATATTATTTGGGATTGCTTATTATCTCAAGATCTAGACTGATCGTATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTAT-CTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTT--GAGAATGTACTGTAAGGAAGATAATTCAATAATGAAACAAGTACTTTCTCTTTACTAT-CTGA-GGAGTGA----TTG--GTA-----------TTTCTAACTAAGGAAGTGGGCCAATTTTATAAA--------AATG-------TGGA----TTAGCTCACATAAACTTTGACATT-C-CGCATGATATAT-----------------TCAGTAGTGGAGT----TTCT--T-TGATG--------------------------ACAAGGCAGAGCAAATGATGG-AACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAA
gi|3 : tagaaactaacatacaaTAAGCAAAGT-CAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTG--AAAACA-TTTCT---AAAGGAAA-TTT--GGAATTGGAT-ACATG-TTT-TGAA----T-TAATAAATGTCAAT----TGC-AACACATATGAGCAACTT-AA-CTTA-CATGGGAG---TACA-C-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACAAC---TTTT--T--TTAAATACCAATTTTAATAAATTTTAACAATTACA-----TT-----TG-CCGACTT--ACATGTAATTAAAT-----GCACAGTGATA------ATTTAGCTCAGTTGAATA----CG-CGGT--ATCATAATCTA---AT-AATCAATA-----AGTAACAATGAATAGA-TTACATTAT-AGGGAAACAATATTATTTGGGATTGCTTATTAT-
gi|17 : agaactaacatacaaAAAGTACTC-ATAGAAACAC-A-ATTAATTGT--AAACC--ATTTT---AAAGGAAATTc
gi|11 : AGAAAAAT-A-TTTATTTTG--AGACCA-TTTTC---AAAGGAA-TTTT--TCAATTAAAC-TCATG-TTTTC-AA----T-TAATAAATGTCAAT----AAC-AACACACATGAACAACTT-AG-CTCA-CATGGGA-AGTTACG-C-TTTAATCGGA-AATTGA---ATGCAT-ATCA---GTAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATATACATGT--AC---TGTTCAT--ATCATTAT
gi|9 : AATATCATG-TTT-T-GAATTTT-AAACA--TGTCAATCG--AATTAACACGCTTGAGCAACTT-AG-CTCA-CACGGGAG-GTTACA-C-TTTAATTGTG-AATTTA---ATTCAA-ATCG---GCGCTTTGCAATGAA-AGGTTGG-A-ATAA--AATAAAAG-----TG---AC-------CATGCTTT-TTA-------TAATCATTTTGAACA-----ATTGATTT-----TGCC--AC-CTTACAAATAAGTAAATTTCATGTACATTAATGATTAACATTTAGCTCACTAGGGTA-------TTAT-----G-A----A---ATAG------AATTTTAGTACCAATGAATAGATTTATATTAT-acactctatacgtaa
gi|12 : TAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATACAGGTAT--AC---TGTTCAT--TTCATTATC-----TTATAATTCTTAACA-----A-----TT-----T--T--GC-C--ACCT-TAAGGAAAT-----GTACATTGATA------GTTTAGCTCACCTGAATA----TTATTAT--TTAGT-----A---AT-T------A-----AGTAACATTAAATAGATTTATATGATGGGGAAAACAACAT------GGATGGTTTATTATCTCA-----------------
gi|4 : -----------------ATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATTCT--CTTGAAGTTTAATTAACA-TTGTCTTCCCATAAAAGAAATCAA----AAGATATC--TTTTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTAT-CTGA-GGAGTGA----TTG--GTA-----------TTTCTAACTAAGGAAGT-GGCC-A------------------ATT-------TTAA----T--A---AAATGTGGA---TTAGC-T-CAC---ATA-AA-----------------TC--T-------TGACATTC-CGCATGATATATTCAGTAGTGGAGTTTCTTTGATGACAAGGCAGAGCAAATGATGG-AACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|8 : aagatctagactgatcgtAAAGAAATC--TTTT--GAGAAAGTGCTGTAATGAAAATGGTTAAATAATCAAATAAACACTTCCTCCTTA--ATATTTGAGGAGTAATTACATGTAGCACTTGATGCATCTATCTAACTAAGAAAGTAGGCTGATATTATTAAGGAATGGGCATTAGTTAACCTGAACTTT--G---ACATTTCGC---ATGACATACTCA--ATA-ATGAAGTTTTACGATGGCTTC--T-------T----ATTTCGC-TAATATT-------------------TGATGACAAGGCAGAACAAATAAT-AGAACAAGTTAGGGGACGCTTAGGCTAG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTGATAAAGACTAAAGAAATTATTTCCTGAAGTATTTACAACAGCATTCAAATTCTTGTACGTAACATGTCAAAATATGTTTAAGGATGTTAAAATATGGAAGGGTTATATACATTTTATTGAC
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 11111 2222 11 11111 22 3333333333 333333 3333 11 11111 11111 111111 2222222 1111 2222 1 1 333333 77777777777777777 2 11 11 4444 22 2222 111 99999999999999999999999 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1
lowQualScore : 5 5 5 7 888 4 1 0 4 4 4 1 55555 5 22 4 4 4 4 4 777 4 9999 4 00 66 66 77777 4 7 0 4 4 4 55 4 4 1 4 4 777 1 4 777 44 0 4 4 777 6666666666 1 7 1 222222 3 3 3333 44 44444 66666 999999 1111111 2222 1 99 1 0000 1 0 0 0 3 000000 3 2 00000000000000000 3 00 44 9999 4 77 4 8 1111 777 44444444444444444444444 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 0 6 0 8 0 3
lowQualScore : . . . . ... . . . . . . . ..... . .. . . . . . ... . .... . .. .. .. ..... . . . . . . .. . . . . . ... . . ... .. . . . ... .......... . . . ...... . . .... .. ..... ..... ...... ....... .... . .. . .... . . . . . ...... . . ................. . .. .. .... . .. . . .... ... ....................... . ..................................................................................................................................... . . . . . . .
lowQualScore : 7 7 7 5 333 4 0 9 4 4 4 0 66666 0 99 4 4 4 4 4 888 6 2222 4 99 11 33 88888 4 2 9 4 4 4 00 4 4 0 4 9 888 0 4 888 88 1 4 4 111 8888888888 9 4 4 333333 0 0 8888 55 33333 77777 222222 7777777 7777 8 22 0 7777 0 6 6 5 2 000000 0 5 00000000000000000 7 77 77 0000 0 55 0 8 2222 555 55555555555555555555555 5 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 8 5 2 8 2 3
consensus : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAGCC-CGTAGAA-GCTAGCAGCCAATAAGG-AAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTG-AAA-CC-ATTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTNAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--TACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAAAT-----GCACATTGATAATT------TAGCTCACTTGAA-------TAT---TATNAT--TTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCA-----------------ATTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTA-TCTCTCCTGAAGTTTAATTAACAATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA----TTG---GTA-CA--------TT----------TCTAACTAAGGAAGTAGGCCGA-T-T-TA-T-AA---------ATT-------CTGA----TGANATGTGGNNTAGCAT-CACAATAA-----------------TTCTT----T----TCTCGCATGATATATTCAGTAGTGGAGTTTCTT-TGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
Reference ( family-297 ) : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAGCC-CNTAGAA-GCTAGCAGCCANTTAGG-AAAATCAT-CG-AAGNACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTG-AAA-CC-ATTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTCGAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGNA-AATTGA---ATNCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--TACTGTTCATTTCATTATCAATTTTAATAATTTTTAACAATT-AT-TTTGCCGACCTACATGTAAGTAAAT-----GCACATTGATAATT------TAGCTCACTTGAA-------TAT---NATTAT--TTNGTAA--ATNAAGTAACAATGAATAGATTTACATTATGGGGAAAACAATATTATTTGGGATTGCTTATTATCTCA-----------------ATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATTCTCTCTTGAAGTTTAATTAACAATTGTCTTCCCATAAAAGAAATCA--AAAAAGATATC--TTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA----TTG---GTA-----------TT----------TCTAACTAAGGAAGTGGGCCGA-T-T-TA-T-AA---------ATT-------TTGA----TGACATNTNGNATANC-T-CGCAATAA-----------------TTCTT----T----TCTCGC-TGATA--------------------T-TGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|1 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGC------CAAACC-------A-GCTAGCAGTCACTTAAG-AAAATCAT-CA-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TCTAATTTT-AAA-CC--TTTTT---AAAGGAAATTTT--TAAATTGAAT-TCATGTTTC-AATA--AA-TAAATGCCAAT----AAC-AACACACATGAACAA-CCTAG-CTCA-CATGGGAGAGTTAC-AC-TTTAATCGTG-AATTGA---ATGTAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--TGTAAAAT-----TG---ACTTCTCATTTCATTATC-----TAATCATTCTGAACAA------TTCGC--ACC-ATATATAAGTAAA------GTACATTGATAGTT------TAGTTCACGTGAA-------TAT---T-TTAT--TTCGTAA--ATGAAGTAACAATGAATAGATTTATATGAT-GGGAAAACAATAT------GGATGGTTTATTAT-TCA-----------------ATTTCCATATGTCGATCCTTATGGAATTGTATTGCGTTCCAACCTGTTTTCTGTAAATCA-ACTGACCTGAAGATTAATTCCCAATTATCTTTCCACAAAAGAAAACAACAAAAAAAAATC--TTGTGAAAAAGTATTATAAGGAAAATAATTAAATAATGAAATAAACACTTCCTCTGTA--ATCTTGGTAGTAAGTAGTTG---GTATTAGATGCCTCTT----------TCTAACTAAAGAAATAGGCT-A-T-TGTA-TCAAT--------ATT-------CTGA----TGATATATAGTACAGTAT-CACAATAA-----------------TTCTT----T----TCTCGC-TAATG--------------------TATGATGACAAGGCAGAGCAAATAAT-AAATAAGATGGGCGACGGCTATGCTAGCTGATCATTTCTCAATTAAGTTCAAGGACACTCTAGAAG
gi|10 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGTCAATAAGCC-CGTAGAA-GCTAGCAACCAATAAGG-AAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-ATTTTAATTTG-AAA-CC-ATTTTT---AAAGG-AATTTT--TTAATAGAAT-TCATGTTTTCAATT--AT-TAAATGTCAAT------------------AACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGAA-AATTGAATCATGTAT-ATCA---GTAATTTGTAATGAA-ATG
gi|11 : ccAGAAAAAT-A-TTTATTTTG-AGA-CC-ATTTTC---AAAGGAATTTTT--C-AATTAAAC-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACACATGAACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGGA-AATTGA---ATGCAT-ATCA---GTAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATATACATG--TACTGTTCATATCATTAT
gi|12 : TAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATACAGGTA--TACTGTTCATTTCATTATC----TTA-TAATTCTTAACAATT-----TTGCC-ACCT-----TAAGGAAAT-----GTACATTGATAGTT------TAGCTCACCTGAA-------TAT---TATTAT--TTAGT-A--ATTAAGTAACATTAAATAGATTTATATGATGGGGAAAACAACAT------GGATGGTTTATTATCTCA-----------------acactctatacgtaa
gi|13 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAGCC-CATAGAA-GCTAGCAGCCAATAAGG-AAAATCAT-CG-AAGTACTACCTGGAAAGT
gi|15 : cattcattatttgttcagcttgtataatgtacttcaatatattgtagaaaataaagtatgacactctaagacc-GCAAGCAGCCACCTAGGAAAAAACAT-CA-AAGGCCT-----GAGAGTACTgttttgtatttctaaacaa
gi|16 : agtaacccggttaggccatAGG-CTGAAGC-TAGCAGCCACT-AA-CAGCA
gi|17 : attAAAGTACTC-ATAGAAACAC-A-ATTAATTGT-AAA-CC-A-TTTT---AAAGGAAATTaaatttaaaccataatgtcatttaa
gi|2 : TAGAA-ACTAACATACAATAAGC-AAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTG-AAA-AC-ATTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACAACTTTTT-TTTTAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAAAT-----GCACAGTGATAATT------TAGCTCAGTTGAA-------TACCGGTATCATAATCTATAATCAATAAGTAACAATGAATAGA-TTACATTATAGGGAAAACAATATTATTTGGGATTGCTTATTATCTCAAGATCTAGACTGATCGTATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTA-TCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTCAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA----TTG---GTA-----------TT----------TCTAACTAAGGAAGTGGGCCAATT-T-TA-T-AA---------A------------A--------ATGTGGATTAGC-T-CAC-ATAA------------------ACTT----TGACATTCCGCATGATATATTCAGTAGTGGAGTTTCTT-TGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAA
gi|3 : AGAA--CTAACATACAATAAGC-AAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTG-AAA-AC-ATTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACAACTTTT--TTTAAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAAAT-----GCACAGTGATAATT------TAGCTCAGTTGAATACGCGGTAT---CATAAT--CTAATAATCAATAAGTAACAATGAATAGA-TTACATTATAGGG-AAACAATATTATTTGGGATTGCTTATTATC
gi|4 : -----------------ATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATTCTCT--TGAAGTTTAATTAACA-TTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA----TTG---GTA-----------TT----------TCTAACTAAGGAAGT-GGCC-------------A---------ATT-------TTAA----TAAAATGTGGATTAGC-T-CAC-ATAA-----------------ATCTTGACAT----TC-CGCATGATATATTCAGTAGTGGAGTTTCTT-TGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|5 : aagatctagactgatcgtAGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAGCC-CTTAGAA-GCTAGCAGCCACTAAGG-AAAACCAT-CA-AAGGACT-----GAGAGTACTC-ATAGAAAAAT-A-TCTAATTTA-AAA-CC-ACTTTT---AAAGGCAATTTT--C-AATTGAAT-TCATGTTTTGAATT--AA-TAAATGTCAAT----AAC-AACAAGCATGAACAA-CTTAG-CTCA-CATGGGAG-TTTAC-AC-TTTAATTGTG-AATTGA---ATTCAT-ATCA---GAACTTTGCAATG-A-ATGTTGG-A-AGCA--AATAAAAT-----TG---ACCACTCTTTTCATT-----TTCTAATCGTTTTGAATAATTAAT-TTTGCT-ACCT-----TAAGTAAAT-----GCACATTGATAATT------TAACGCACCTGAT-------TAT---TATTAT--TTAGT-C--GTTAAGAAAC
gi|6 : GG-CTGAAGCCTAGCAGCCACTTAACCAGCAGCCATTCAGCCGCGTAGAAAGCTGCCAGC-ACATAAG-AAAATCAT-CGCAAGTAC------GTAAGTA-TC-ATTG-AAAAT-A-TTT-ATTTGAAAA-CCAATTCTTCCCAAAGG-AATTTT--C-AATTAAAC-TCATGTTTTCAATT--AA--AAATGTCAATAGCAAAC-AACACACGAGAACAG-CTTAGTCTCACCATGGGA-AGTT-C-GCATTTAA-CGAGTAATGAA---ATGCATAATCATCTATAATTTGTAATGAA-ATCTTAGTACAGCAAGTGTAAGAT-----AA--TACTG-TCATgtcgaa
gi|7 : ccAGGTCTGAAGC-TAGCAGCCACT-AACCAGCAGCCT-TAAGAT-CCGAGAA-GCTAGCAGCCAAT-AGG-AAAATCATTCG-AAGTACTC----GAAAG-GCTCCATAGAAAAATTA-TTTATTGTG-AAAACC-ATTTTC---AA-GGAACTTTTATCAGATTAAAC-TCATGTTTTCAATT--AAGTAAATGTCAAT----AAC-ACCAC---TGAACAATCTTAG-CTCA-CATGGGA-AGTTACAGC-TTTAATCGCA-AAT-GA---ATGCAT-ATCA---GTAATTTGTAA-GAATATGTGTA-A-AGCA--TATAAAAG-----TA--TACTGTTCATTTCATTATataacactctatacgt
gi|8 : ccAAAGAAATC--TTTTGAGAAAGTGCTGTAATGAAAATGGTTAAATAATCAAATAAACACTTCCTCCTTAATATTTGAGGAGTAA----TTACATGTAGCAC-------TTGATGCATCTATCTAACTAAGAAAGTAGGCTGA-TAT-TATT-AAGGAATGGGCATTAGTTAACCTGAACTTTGACATTTCGCATGACATACTCAATAATGAAGTTTTACGATGGCTTCTT----A----TTTCGC-TAATAT-------------------T-TGATGACAAGGCAGAACAAATAATAGAACAAGTTAGGGGACGCTT----AGGCTAGTCCTAT-TCTCTTAatccactt
gi|9 : AATATCATGTTTTGAATTTTAA--ACATGTCAATCG--AATTAACACGCTTGAGCAA-CTTAG-CTCA-CACGGGAG-GTTAC-AC-TTTAATTGTG-AATTTA---ATTCAA-ATCG---GCGCTTTGCAATGAA-AGGTTGG-A-ATAA--AATAAAAG-----TG---ACCATGC-TTT--TTAT-------AATCATTTTGAACAATTGAT-TTTGCCACCTTACAAATAAGTAAATTTCATGTACATTAATGATTAACATTTAGCTCACTAGGG-------TAT---TATGAA--ATAG-AA--TTTTAGTACCAATGAATAGATTTATATTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGATAAAGACTAAAGAAATTATTTCCTGAAGTATTTACAACAGCATTCAAATTCTTGTACGTAACATGTCAAAATATGTTTAAGGATGTTAAAATATGGAAGGGTTATATACATTTTATTGAC
Alignments
lowQualScore : 11111 2222 11111 22 333333333333 3333333 3333 11 11111 11111 111111 222222222222222 222222 333333 99999999999999999 2 2222 999999999999999999999999999999 11 1 8888888888888888888888 2 2 11 555555555555 999999999999999999999999999 1
lowQualScore : 5 5 5 7 6 7777 4 4 2 4 4 1 55555 5 22 4 4 4 4 4 777 4 9999 4 1 66 66 77777 4 7 0 4 4 4 55 4 4 1 4 4 777 1 4 777 4 0 0 4 4 777 666666666666 1 7 1 2222222 1 1 3333 44 44444 66666 999999 222222222222222 1 0 000000 0 0 0 7 3 000000 1 2 33333333333333333 0 6 0 3 8888 1 3 9 1 8 666666666666666666666666666666 33 7 0 6666666666666666666666 22 7 2 77 555555555555 3 7 0 0 0 999999999999999999999999999 6 0 6 0 8 0 0 3
lowQualScore : . . . . . .... . . . . . . ..... . .. . . . . . ... . .... . . .. .. ..... . . . . . . .. . . . . . ... . . ... . . . . . ... ............ . . . ....... . . .... .. ..... ..... ...... ............... . . ...... . . . . . ...... . . ................. . . . . .... . . . . . .............................. .. . . ...................... .. . . .. ............ . . . . . ........................... . . . . . . . .
lowQualScore : 7 7 7 5 7 4444 4 4 9 4 4 7 66666 0 99 4 4 4 4 4 888 6 2222 4 0 11 33 88888 4 2 9 4 4 4 00 4 4 1 4 9 888 1 4 888 0 7 1 4 4 111 888888888888 9 4 4 4444444 0 0 5555 55 33333 77777 222222 888888888888888 0 3 888888 8 8 6 0 2 000000 0 5 33333333333333333 7 7 7 7 3333 0 2 2 0 8 222222222222222222222222222222 88 0 5 5555555555555555555555 00 8 0 00 222222222222 2 0 2 2 2 555555555555555555555555555 5 8 5 2 8 2 7 3
consensus : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTG-AAA-CC-ATTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAACA-TTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-AT-AA-A---TGATGAAATGTGGATTAGC-TCACA-TAAATCTTGACAT----TCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
Reference ( family-297 ) : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTG-AAA-CC-ATTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTNAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCCTGAAGTTTAATTAACAATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-------------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-AT-AA-ATTCTGATGANATGTGGNNTAGCATCACAATAATTCTT----T----TCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
gi|1 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGC------CAAA-CC-------A-GCTAGCAGTCA-CTTAAGAAAATCAT-CA-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TCTAATTTT-AAA-CC--TTTTT---AAAGGAAATTTT--TAAATTGAAT-TCATGTTT-CAATA--AA-TAAATGCCAAT----AAC-AACACACATGAACAA-CCTAG-CTCA-CATGGGAGAGTTAC-AC-TTTAATCGTG-AATTGA---ATGTAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--TGTAAAAT-----TG-----ACTTCTCATTTCATTATC-----TAATCATTCTGAACAA------TTCGC--ACC-ATATATAAGTAA-----A-GTACATTGATA------GTTTAGTTCACGTGAA-------TA------TT-TTATTTCGTAA--ATGAAGTAACAATGAATAGATTTATATGAT-GGGAAAACAATAT------GGATGGTTTATTAT-TCAA-----------------TTTCCATATGTCGATCCTTATGGAATTGTATTGCGTTCCAACCTGTTTTCTGTAAATCAACTGACCTGAAGATTAATTCCCAATTATCTTTCCACAAAAGAAAACAACAAAAAAAAATC--TTGTGAAAAAGTATTATAAGGAAAATAATTAAATAATGAAATAAACACTTCCTCTGTA--ATCTTGGTAGTAAGTAG---------TTGGTATTAGATGCCTCTT--TCTAACTAAAGAAATAGGCT-AT-TGT-ATCAATATTCTGATGATATATAGTACAGTATCACAATAATTCTT----T----TCTCGC-TAATGTA--------------------------------------------TGATGACAAGGCAGAGCAAATAAT-AAATAAGATGGGCGACGGCTATGCTAGCTGATCATTTCTCAATTAAGTTCAAGGACACTCTAGAAG
gi|10 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGTCAATAAG-CC-CGTAGAA-GCTAGCAACCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-ATTTTAATTTG-AAA-CC-ATTTTT---AAAGG-AATTTT--TTAATAGAAT-TCATGTTTTCAATT--AT-TAAATGTCAAT------------------AACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGAA-AATTGAATCATGTAT-ATCA---GTAATTTGTAATGAA-ATG
gi|11 : ccAGAAAAAT-A-TTTATTTTG-AGA-CC-ATTTTC---AAAGGAATTTTT--C-AATTAAAC-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACACATGAACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGGA-AATTGA---ATGCAT-ATCA---GTAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATATACATG--T--ACTGTTCATATCATTAT
gi|12 : TAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATACAGGTA--T--ACTGTTCATTTCATTATC--TT---ATAATTCTTAACAATT-----TTGCC-ACCT-----TAAGGAA-----ATGTACATTGATA------GTTTAGCTCACCTGAA-------TA------TTATTATTTAGT-A--ATTAAGTAACATTAAATAGATTTATATGATGGGGAAAACAACAT------GGATGGTTTATTATCTCAacactctatacgtaa
gi|13 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CATAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACTACCTGGAAAGT
gi|15 : cattcattatttgttcagcttgtataatgtacttcaatatattgtagaaaataaagtatgacactctaagacc-GCAAGCAGCCACCTAGGAAAAAACAT-CA-AAGGCCT-----GAGAGTACTgttttgtatttctaaacaa
gi|16 : agtaacccggttaggccatAGG-CTGAAGC-TAGCAGCCACT-AA-CAGCA
gi|17 : attAAAGTACTC-ATAGAAACAC-A-ATTAATTGT-AAA-CC-A-TTTT---AAAGGAAATTaaatttaaaccataatgtcatttaa
gi|2 : TAGAA-ACTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTG-AAA-AC-ATTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGAA-A----------ACA--AATAAAAT-----TG--ACAACTTTTT-TTTTAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAA-------TACCGGTATCATAATCTA-TAATCAATAAGTAACAATGAATAGATT-ACATTATAGGGAAAACAATATTATTTGGGATTGCTTATTATCTCAAGATCTAGACTGATCGTATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAACA-TTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTCAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA-------------TTGGTA-----------TT--TCTAACTAAGGAAGTGGGCCAAT-T-TTAT-AA-A---------AATGTGGATTAGC-TCACA-TAAACTTTGACAT----TC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAA
gi|3 : AGAA--CTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTG-AAA-AC-ATTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACA--ACTTTT--TTTAAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAATACGCGGTA------TCATAATCTAATAATCAATAAGTAACAATGAATAGA-TTACATTATAGGG-AAACAATATTATTTGGGATTGCTTATTATC
gi|4 : A-----------------TTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTAT-TCTCTTGAAGTTTAATTAACA-TTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA-------------TTGGTA-----------TT--TCTAACTAAGGAAGT-GGCCAAT-T-T-----------TAATAAAATGTGGATTAGC-TCACA-TAAATCTTGACAT----TC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|5 : aagatctagactgatcgtAGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CTTAGAA-GCTAGCAGCCA-CTAAGGAAAACCAT-CA-AAGGACT-----GAGAGTACTC-ATAGAAAAAT-A-TCTAATTTA-AAA-CC-ACTTTT---AAAGGCAATTTT--C-AATTGAAT-TCATGTTTTGAATT--AA-TAAATGTCAAT----AAC-AACAAGCATGAACAA-CTTAG-CTCA-CATGGGAG-TTTAC-AC-TTTAATTGTG-AATTGA---ATTCAT-ATCA---GAACTTTGCAATG-A-ATGTTGG-A-AGCA--AATAAAAT-----TG-----ACCACTCTTTTCATT-----TTCTAATCGTTTTGAATAATTAAT-TTTGCT-ACCT-----TAAGTAA-----ATGCACATTGATA------ATTTAACGCACCTGAT-------TA------TTATTATTTAGT-C--GTTAAGAAAC
gi|6 : GG-CTGAAGCCTAGCAGCCACTTAACCAGCAGCCATTCAG-CCGCGTAGAAAGCTGCCAGCAC-ATAAG-AAAATCAT-CGCAAGTAC------GTAAGTA-TC-ATTG-AAAAT-A-TTT-ATTTGAAAA-CCAATTCTTCCCAAAGG-AATTTT--C-AATTAAAC-TCATGTTTTCAATT--AA--AAATGTCAATAGCAAAC-AACACACGAGAACAG-CTTAGTCTCACCATGGGA-AGTT-C-GCATTTAA-CGAGTAATGAA---ATGCATAATCATCTATAATTTGTAATGAA-ATCTTAGTACAGCAAGTGTAAGAT-----AA--T--ACTG-TCATgtcgaa
gi|7 : ccAGGTCTGAAGC-TAGCAGCCACT-AACCAGCAGCCT-TAAGATC-CG-AGAA-GCTAGCAGCCA-ATA-GGAAAATCATTCG-AAGTACTC----GAAAG-GCTCCATAGAAAAATTA-TTTATTGTG-AAAACC-ATTTTC---AA-GGAACTTTTATCAGATTAAAC-TCATGTTTTCAATT--AAGTAAATGTCAAT----AAC-ACCAC---TGAACAATCTTAG-CTCA-CATGGGA-AGTTACAGC-TTTAATCGCA-AAT-GA---ATGCAT-ATCA---GTAATTTGTAA-GAATATGTGTA-A-AGCA--TATAAAAG-----TA--T--ACTGTTCATTTCATTATataacactctatacgt
gi|8 : ccAAAGAAATCTTTT--GAGAAAGTGCTGTAATGAAAATGGTTAAATAATCAAATAAACACTTCCTCCTTAATATTTGAGGAGTAATTACATGTAGCACTTGATG-CA--------TCTATCTAACTAAGAAAGTAGGCTGATAT-T-AT-TA-A-------GGAATGGGCATTAGT-TAACCTGAA--CTT----TGACATTTCGCATGACATACTCAATAATGAAGTTTTACGATGGCTTCTTATTTCGCTAATATTTGATGACAAGGCAGAACAAATAATAGAACAAGTTAGGGGACGCTT----AGGCTAGTCCTAT-TCTCTTAatccactt
gi|9 : AATATCATGTTTTGAATTTTAA--ACATGTCAATCG--AATTAACACGCTTGAGCAA-CTTAG-CTCA-CACGGGAG-GTTAC-AC-TTTAATTGTG-AATTTA---ATTCAA-ATCG---GCGCTTTGCAATGAA-AGGTTGG-A-ATAA--AATAAAAG-----TG-----ACCATGC-TTT--TTA-------TAATCATTTTGAACAATTGAT-TTTGCCACCTTACAAATAAGTAAATTTCATGTACATTAATGATTAACATTTAGCTCACTAGGG-------TA------TTATGAAATAG-AA--TTTTAGTACCAATGAATAGATTTATATTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGATAAAGACTAAAGAAATTATTTCCTGAAGTATTTACAACAGCATTCAAATTCTTGTACGTAACATGTCAAAATATGTTTAAGGATGTTAAAATATGGAAGGGTTATATACATTTTATTGAC
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 11111 2222 11111 22 333333333333 3333333 3333 11 11111 11111 111111 222222222222222 222222 333333 99999999999999999 1 2222 0000000000000000000000000000000 11 1 666666666666666666666 1 1 11 999999999999999999999999999 1
lowQualScore : 5 5 5 7 6 7777 4 4 2 4 4 1 55555 5 1 4 4 2 8 4 777 2 9999 4 1 66 66 77777 4 7 0 4 4 4 55 4 4 1 4 4 777 1 4 777 4 0 0 4 4 777 666666666666 1 7 1 2222222 1 1 3333 44 44444 66666 999999 222222222222222 1 0 000000 0 0 0 7 3 000000 1 2 33333333333333333 0 6 3 8888 1 3 9 1 8 3333333333333333333333333333333 33 7 0 999999999999999999999 0 0 2 88 3 7 0 0 0 999999999999999999999999999 6 0 6 0 8 0 0 3
lowQualScore : . . . . . .... . . . . . . ..... . . . . . . . ... . .... . . .. .. ..... . . . . . . .. . . . . . ... . . ... . . . . . ... ............ . . . ....... . . .... .. ..... ..... ...... ............... . . ...... . . . . . ...... . . ................. . . . .... . . . . . ............................... .. . . ..................... . . . .. . . . . . ........................... . . . . . . . .
lowQualScore : 7 7 7 5 7 4444 4 4 9 4 4 7 66666 0 1 4 4 2 9 4 888 0 2222 4 1 11 33 88888 4 2 9 4 4 4 00 4 4 1 4 9 888 1 4 888 0 7 1 4 4 111 888888888888 9 4 4 4444444 0 0 5555 55 33333 77777 222222 888888888888888 0 3 888888 8 8 6 0 2 000000 0 5 33333333333333333 7 7 3 3333 0 2 2 0 8 2222222222222222222222222222222 88 0 5 888888888888888888888 0 0 5 00 2 0 2 2 2 555555555555555555555555555 5 8 5 2 8 2 7 3
consensus : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
Reference ( family-297 ) : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATAAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAATCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
gi|1 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGC------CAAA-CC-------A-GCTAGCAGTCA-CTTAAGAAAATCAT-CA-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TCTAATTTTAAA-CC--TTTTT---AAAGGAAATTTT--TAAATTGAAT-TCATGTTT-CAATA--AA-TAAATGCCAAT----AAC-AACACACATGAACAA-CCTAG-CTCA-CATGGGAGAGTTAC-AC-TTTAATCGTG-AATTGA---ATGTAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--TGTAAAAT-----TG-----ACTTCTCATTTCATTATC-----TAATCATTCTGAACAA------TTCGC--ACC-ATATATAAGTAA-----A-GTACATTGATA------GTTTAGTTCACGTGAA-------TA------TT-TTATTTCGTAA--ATGAAGTAACAATGAATAGATTTATATGAT-GGGAAAACAATAT------GGATGGTTTATTAT-TCAA-----------------TTTCCATATGTCGATCCTTATGGAATTGTATTGCGTTCCAACCTGTTTTCTGTAAATCAACTGACCTGAAGATTAATTCCCAATTATCTTTCCACAAAAGAAAACAACAAAAAAAAATC--TTGTGAAAAAGTATTATAAGGAAAATAATTAAATAATGAAATAAACACTTCCTCTGTA--ATCTTGGTAGTAAGTAG---------TTGGTATTAGATGCCTCTT--TCTAACTAAAGAAATAGGCT-AT-TGT-ATCAATATTCTGATGATATATAGTACAGTATCACAATAATTCTT----TTCTCGC-TAATGTA--------------------------------------------TGATGACAAGGCAGAGCAAATAAT-AAATAAGATGGGCGACGGCTATGCTAGCTGATCATTTCTCAATTAAGTTCAAGGACACTCTAGAAG
gi|10 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGTCAATAAG-CC-CGTAGAA-GCTAGCAACCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-ATTTTAATTTGAAA-CCA-TTTTT---AAAGG-AATTTT--TTAATAGAAT-TCATGTTTTCAATT--AT-TAAATGTCAAT------------------AACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGAA-AATTGAATCATGTAT-ATCA---GTAATTTGTAATGAA-ATG
gi|11 : ccAGAAAAAT-A-TTTATTTTGAGA-CCA-TTTTC---AAAGGAATTTTT--C-AATTAAAC-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACACATGAACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGGA-AATTGA---ATGCAT-ATCA---GTAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATATACATG--T--ACTGTTCATATCATTAT
gi|12 : TAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATACAGGTA--T--ACTGTTCATTTCATTATC--TT---ATAATTCTTAACAATT-----TTGCC-ACCT-----TAAGGAA-----ATGTACATTGATA------GTTTAGCTCACCTGAA-------TA------TTATTATTTAGT-A--ATTAAGTAACATTAAATAGATTTATATGATGGGGAAAACAACAT------GGATGGTTTATTATCTCAacactctatacgtaa
gi|13 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CATAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACTACCTGGAAAGT
gi|15 : cattcattatttgttcagcttgtataatgtacttcaatatattgtagaaaataaagtatgacactctaagacc-GCAAGCAGCCACCTAGGAAAAAACAT-CA-AAGGCCT-----GAGAGTACTgttttgtatttctaaacaa
gi|16 : agtaacccggttaggccatAGG-CTGAAGC-TAGCAGCCACT-AA-CAGCA
gi|17 : attAAAGTACTC-ATAGAAACAC-A-ATTAATTGTAAA-CCA--TTTT---AAAGGAAATTaaatttaaaccataatgtcatttaa
gi|2 : TAGAA-ACTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTGAAA-ACA-TTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGAA-A----------ACA--AATAAAAT-----TG--ACAACTTTTT-TTTTAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAA-------TACCGGTATCATAATCTA-TAATCAATAAGTAACAATGAATAGATT-ACATTATAGGGAAAACAATATTATTTGGGATTGCTTATTATCTCAAGATCTAGACTGATCGTATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTCAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA-T------------TGGTA-----------TT--TCTAACTAAGGAAGTGGGCCAAT-T-TTATAAA-----------AATGTGGATTAGC-TCAC-ATAAACTTTGACATTC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAA
gi|3 : AGAA--CTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTGAAA-ACA-TTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACA--ACTTTT--TTTAAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAATACGCGGTA------TCATAATCTAATAATCAATAAGTAACAATGAATAGA-TTACATTATAGGG-AAACAATATTATTTGGGATTGCTTATTATC
gi|4 : A-----------------TTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTAT-TCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTG---A----------TTGGT---A--------TT--TCTAACTAAGGAAGT-GGCCAAT-T-T-----------TAATAAAATGTGGATTAGC-TCAC-ATAAATCTTGACATTC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|5 : aagatctagactgatcgtAGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CTTAGAA-GCTAGCAGCCA-CTAAGGAAAACCAT-CA-AAGGACT-----GAGAGTACTC-ATAGAAAAAT-A-TCTAATTTAAAA-CCA-CTTTT---AAAGGCAATTTT--C-AATTGAAT-TCATGTTTTGAATT--AA-TAAATGTCAAT----AAC-AACAAGCATGAACAA-CTTAG-CTCA-CATGGGAG-TTTAC-AC-TTTAATTGTG-AATTGA---ATTCAT-ATCA---GAACTTTGCAATG-A-ATGTTGG-A-AGCA--AATAAAAT-----TG-----ACCACTCTTTTCATT-----TTCTAATCGTTTTGAATAATTAAT-TTTGCT-ACCT-----TAAGTAA-----ATGCACATTGATA------ATTTAACGCACCTGAT-------TA------TTATTATTTAGT-C--GTTAAGAAAC
gi|6 : GG-CTGAAGCCTAGCAGCCACTTAACCAGCAGCCATTCAG-CCGCGTAGAAAGCTGCCAGCAC-ATAAG-AAAATCAT-CGCAAGTAC------GTAAGTA-TC-ATTGAAAA-T-A-TTTA-TTTGAAAACCAATTCTTCCCAAAGGAA-TTTT--C-AATTAAAC-TCATGTTTTCAATT--AA--AAATGTCAATAGCAAAC-AACACACGAGAACAG-CTTAGTCTCACCATGGGA-AGTT-C-GCATTTAA-CGAGTAATGAA---ATGCATAATCATCTATAATTTGTAATGAA-ATCTTAGTACAGCAAGTGTAAGAT-----AA--T--ACTG-TCATgtcgaa
gi|7 : ccAGGTCTGAAGC-TAGCAGCCACT-AACCAGCAGCCT-TAAGATC-CG-AGAA-GCTAGCAGCCA-ATA-GGAAAATCATTCG-AAGTACTC----GAAAG-GCTCCATAGAAAAATTA-TTTATTGTGAAAACCA-TTTTC---AA-GGAACTTTTATCAGATTAAAC-TCATGTTTTCAATT--AAGTAAATGTCAAT----AAC-ACCAC---TGAACAATCTTAG-CTCA-CATGGGA-AGTTACAGC-TTTAATCGCA-AAT-GA---ATGCAT-ATCA---GTAATTTGTAA-GAATATGTGTA-A-AGCA--TATAAAAG-----TA--T--ACTGTTCATTTCATTATataacactctatacgt
gi|8 : ccAAAGAAATCTTTT--GAGAAAGTGCTGTAATGAAAATGGTTAAATAATCAAATAAACACTTCCTCCTTAATATTTGAGGAGTAATTACATGTAGCACTTGATG-CA--------TCTATCTAACTAAGAAAGTAGGCTGATAT-T-ATTAA---------GGAATGGGCATTAGT-TAAC-CTGAACTTTGACATT-TCGCATGACATACTCAATAATGAAGTTTTACGATGGCTTCTTATTTCGCTAATATTTGATGACAAGGCAGAACAAATAATAGAACAAGTTAGGGGACGCTT----AGGCTAGTCCTAT-TCTCTTAatccactt
gi|9 : AATATCATGTTTTGAATTTTAA--ACATGTCAATCG--AATTAACACGCTTGAGCAA-CTTAG-CTCA-CACGGGAG-GTTAC-AC-TTTAATTGTG-AATTTA---ATTCAA-ATCG---GCGCTTTGCAATGAA-AGGTTGG-A-ATAA--AATAAAAG-----TG-----ACCATGC-TTT--TTA-------TAATCATTTTGAACAATTGAT-TTTGCCACCTTACAAATAAGTAAATTTCATGTACATTAATGATTAACATTTAGCTCACTAGGG-------TA------TTATGAAATAG-AA--TTTTAGTACCAATGAATAGATTTATATTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGATAAAGACTAAAGAAATTATTTCCTGAAGTATTTACAACAGCATTCAAATTCTTGTACGTAACATGTCAAAATATGTTTAAGGATGTTAAAATATGGAAGGGTTATATACATTTTATTGAC
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 11111 2222 11111 22 333333333333 3333333 3333 11 11111 11111 111111 222222222222222 222222 333333 99999999999999999 1 2222 0000000000000000000000000000000 11 1 666666666666666666666 1 1 11 999999999999999999999999999 1
lowQualScore : 5 5 5 7 6 7777 4 4 2 4 4 1 55555 5 1 4 4 2 8 4 777 2 9999 4 1 66 66 77777 4 7 0 4 4 4 55 4 4 1 4 4 777 1 4 777 4 0 0 4 4 777 666666666666 1 7 1 2222222 1 1 3333 44 44444 66666 999999 222222222222222 1 0 000000 0 0 0 7 3 000000 1 2 33333333333333333 0 6 3 8888 1 3 9 1 8 3333333333333333333333333333333 33 7 0 444444444444444444444 0 0 2 88 3 7 0 0 0 999999999999999999999999999 6 0 6 0 8 0 0 3
lowQualScore : . . . . . .... . . . . . . ..... . . . . . . . ... . .... . . .. .. ..... . . . . . . .. . . . . . ... . . ... . . . . . ... ............ . . . ....... . . .... .. ..... ..... ...... ............... . . ...... . . . . . ...... . . ................. . . . .... . . . . . ............................... .. . . ..................... . . . .. . . . . . ........................... . . . . . . . .
lowQualScore : 7 7 7 5 7 4444 4 4 9 4 4 7 66666 0 1 4 4 2 9 4 888 0 2222 4 1 11 33 88888 4 2 9 4 4 4 00 4 4 1 4 9 888 1 4 888 0 7 1 4 4 111 888888888888 9 4 4 4444444 0 0 5555 55 33333 77777 222222 888888888888888 0 3 888888 8 8 6 0 2 000000 0 5 33333333333333333 7 7 3 3333 0 2 2 0 8 2222222222222222222222222222222 88 0 5 888888888888888888888 0 0 5 00 2 0 2 2 2 555555555555555555555555555 5 8 5 2 8 2 7 3
consensus : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
Reference ( family-297 ) : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
gi|1 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGC------CAAA-CC-------A-GCTAGCAGTCA-CTTAAGAAAATCAT-CA-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TCTAATTTTAAA-CC--TTTTT---AAAGGAAATTTT--TAAATTGAAT-TCATGTTT-CAATA--AA-TAAATGCCAAT----AAC-AACACACATGAACAA-CCTAG-CTCA-CATGGGAGAGTTAC-AC-TTTAATCGTG-AATTGA---ATGTAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--TGTAAAAT-----TG-----ACTTCTCATTTCATTATC-----TAATCATTCTGAACAA------TTCGC--ACC-ATATATAAGTAA-----A-GTACATTGATA------GTTTAGTTCACGTGAA-------TA------TT-TTATTTCGTAA--ATGAAGTAACAATGAATAGATTTATATGAT-GGGAAAACAATAT------GGATGGTTTATTAT-TCAA-----------------TTTCCATATGTCGATCCTTATGGAATTGTATTGCGTTCCAACCTGTTTTCTGTAAATCAACTGACCTGAAGATTAATTCCCAATTATCTTTCCACAAAAGAAAACAACAAAAAAAAATC--TTGTGAAAAAGTATTATAAGGAAAATAATTAAATAATGAAATAAACACTTCCTCTGTA--ATCTTGGTAGTAAGTAG---------TTGGTATTAGATGCCTCTT--TCTAACTAAAGAAATAGGCT-AT-TGT-ATCAATATTCTGATGATATATAGTACAGTATCACAATAATTCTT----TTCTCGC-TAATGTA--------------------------------------------TGATGACAAGGCAGAGCAAATAAT-AAATAAGATGGGCGACGGCTATGCTAGCTGATCATTTCTCAATTAAGTTCAAGGACACTCTAGAAG
gi|10 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGTCAATAAG-CC-CGTAGAA-GCTAGCAACCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-ATTTTAATTTGAAA-CCA-TTTTT---AAAGG-AATTTT--TTAATAGAAT-TCATGTTTTCAATT--AT-TAAATGTCAAT------------------AACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGAA-AATTGAATCATGTAT-ATCA---GTAATTTGTAATGAA-ATG
gi|11 : ccAGAAAAAT-A-TTTATTTTGAGA-CCA-TTTTC---AAAGGAATTTTT--C-AATTAAAC-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACACATGAACAA-CTTAG-CTCA-CATGGGA-AGTTAC-GC-TTTAATCGGA-AATTGA---ATGCAT-ATCA---GTAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATATACATG--T--ACTGTTCATATCATTAT
gi|12 : TAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATACAGGTA--T--ACTGTTCATTTCATTATC--TT---ATAATTCTTAACAATT-----TTGCC-ACCT-----TAAGGAA-----ATGTACATTGATA------GTTTAGCTCACCTGAA-------TA------TTATTATTTAGT-A--ATTAAGTAACATTAAATAGATTTATATGATGGGGAAAACAACAT------GGATGGTTTATTATCTCAacactctatacgtaa
gi|13 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CATAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACTACCTGGAAAGT
gi|15 : cattcattatttgttcagcttgtataatgtacttcaatatattgtagaaaataaagtatgacactctaagacc-GCAAGCAGCCACCTAGGAAAAAACAT-CA-AAGGCCT-----GAGAGTACTgttttgtatttctaaacaa
gi|16 : agtaacccggttaggccatAGG-CTGAAGC-TAGCAGCCACT-AA-CAGCA
gi|17 : attAAAGTACTC-ATAGAAACAC-A-ATTAATTGTAAA-CCA--TTTT---AAAGGAAATTaaatttaaaccataatgtcatttaa
gi|2 : TAGAA-ACTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTGAAA-ACA-TTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGAA-A----------ACA--AATAAAAT-----TG--ACAACTTTTT-TTTTAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAA-------TACCGGTATCATAATCTA-TAATCAATAAGTAACAATGAATAGATT-ACATTATAGGGAAAACAATATTATTTGGGATTGCTTATTATCTCAAGATCTAGACTGATCGTATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTCAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA-T------------TGGTA-----------TT--TCTAACTAAGGAAGTGGGCCAAT-T-TTATAAA-----------AATGTGGATTAGC-TCAC-ATAAACTTTGACATTC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAA
gi|3 : AGAA--CTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTGAAA-ACA-TTTCT---AAAGGAAATTTG---GAATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACA--ACTTTT--TTTAAATACCAATTTTAATAAATTTTAACAATT-ACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAATACGCGGTA------TCATAATCTAATAATCAATAAGTAACAATGAATAGA-TTACATTATAGGG-AAACAATATTATTTGGGATTGCTTATTATC
gi|4 : A-----------------TTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTAT-TCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTG---A----------TTGGT---A--------TT--TCTAACTAAGGAAGT-GGCCAAT-T-T-----------TAATAAAATGTGGATTAGC-TCAC-ATAAATCTTGACATTC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|5 : aagatctagactgatcgtAGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CTTAGAA-GCTAGCAGCCA-CTAAGGAAAACCAT-CA-AAGGACT-----GAGAGTACTC-ATAGAAAAAT-A-TCTAATTTAAAA-CCA-CTTTT---AAAGGCAATTTT--C-AATTGAAT-TCATGTTTTGAATT--AA-TAAATGTCAAT----AAC-AACAAGCATGAACAA-CTTAG-CTCA-CATGGGAG-TTTAC-AC-TTTAATTGTG-AATTGA---ATTCAT-ATCA---GAACTTTGCAATG-A-ATGTTGG-A-AGCA--AATAAAAT-----TG-----ACCACTCTTTTCATT-----TTCTAATCGTTTTGAATAATTAAT-TTTGCT-ACCT-----TAAGTAA-----ATGCACATTGATA------ATTTAACGCACCTGAT-------TA------TTATTATTTAGT-C--GTTAAGAAAC
gi|6 : GG-CTGAAGCCTAGCAGCCACTTAACCAGCAGCCATTCAG-CCGCGTAGAAAGCTGCCAGCAC-ATAAG-AAAATCAT-CGCAAGTAC------GTAAGTA-TC-ATTGAAAA-T-A-TTTA-TTTGAAAACCAATTCTTCCCAAAGGAA-TTTT--C-AATTAAAC-TCATGTTTTCAATT--AA--AAATGTCAATAGCAAAC-AACACACGAGAACAG-CTTAGTCTCACCATGGGA-AGTT-C-GCATTTAA-CGAGTAATGAA---ATGCATAATCATCTATAATTTGTAATGAA-ATCTTAGTACAGCAAGTGTAAGAT-----AA--T--ACTG-TCATgtcgaa
gi|7 : ccAGGTCTGAAGC-TAGCAGCCACT-AACCAGCAGCCT-TAAGATC-CG-AGAA-GCTAGCAGCCA-ATA-GGAAAATCATTCG-AAGTACTC----GAAAG-GCTCCATAGAAAAATTA-TTTATTGTGAAAACCA-TTTTC---AA-GGAACTTTTATCAGATTAAAC-TCATGTTTTCAATT--AAGTAAATGTCAAT----AAC-ACCAC---TGAACAATCTTAG-CTCA-CATGGGA-AGTTACAGC-TTTAATCGCA-AAT-GA---ATGCAT-ATCA---GTAATTTGTAA-GAATATGTGTA-A-AGCA--TATAAAAG-----TA--T--ACTGTTCATTTCATTATataacactctatacgt
gi|8 : ccAAAGAAATCTTTT--GAGAAAGTGCTGTAATGAAAATGGTTAAATAATCAAATAAACACTTCCTCCTTAATATTTGAGGAGTAATTACATGTAGCACTTGATG-CA--------TCTATCTAACTAAGAAAGTAGGCTGATAT-T-ATTAA---------GGAATGGGCATTAGT-TAAC-CTGAACTTTGACATT-TCGCATGACATACTCAATAATGAAGTTTTACGATGGCTTCTTATTTCGCTAATATTTGATGACAAGGCAGAACAAATAATAGAACAAGTTAGGGGACGCTT----AGGCTAGTCCTAT-TCTCTTAatccactt
gi|9 : AATATCATGTTTTGAATTTTAA--ACATGTCAATCG--AATTAACACGCTTGAGCAA-CTTAG-CTCA-CACGGGAG-GTTAC-AC-TTTAATTGTG-AATTTA---ATTCAA-ATCG---GCGCTTTGCAATGAA-AGGTTGG-A-ATAA--AATAAAAG-----TG-----ACCATGC-TTT--TTA-------TAATCATTTTGAACAATTGAT-TTTGCCACCTTACAAATAAGTAAATTTCATGTACATTAATGATTAACATTTAGCTCACTAGGG-------TA------TTATGAAATAG-AA--TTTTAGTACCAATGAATAGATTTATATTAT
blockSeqs : T C T A A GCGT A C G T C T ACCTG C G T T A A A CCC A ATCA A C TT GT AGCAA T A T T C A A A A T T ATC G A TCT T T C AGT ATACATGT G A C CCAATTT A T ACA CG ACATG ATTTC ATTAAC TACGCGGTA T ATAATC G A TATTTG G C GATCTAGACTGATCGTA C . . T T T T C ATTACATGTAGCACTTGATGCA TA G A ATTATTAAGG . . G C A T TACGATGGCTTCTTATTTCGCTAATAT G G G .
blockSeqs : . . . A . CGT . . G . . T C . G . . T A . . T TT . C . T CGA . A . . . A . . G . T . G . . . . . T ACAGGTAT G A C CCAATTT A T ACA CG ACATG . . TACCGGTA A TAATC A A TATTTG T C . . . . T T T T C ATTGGTA . A A TTTATAAA . . G C A T CT G G G .
blockSeqs : . . . A . CAT . . A . . G . . G . . A . . . A C . G . T A . A . . . G . . T . A . T . . . . . T TGACA T T T TCTT A T AAT CA ACAAA . . TA A GTA A . . T C A T . A A ATTGGTA . . G TTTAATAA . . G T A C CT A . .
blockSeqs : . . . T . CTT . . C . . G . . G . . A . . . A G . G . T T . G . . . G . . T . A . T . . . . . A TGACA T A A TTC C G GAT C . . . TA T GTC
blockSeqs : . . . . . CG . . C . . G . . G . . A . . . A G . G . T T . A . . . G . . T . T . T . . . . . A AAT A A C . C G . T . . . TA G GAA
blockSeqs : . . . . . G . . G . . G . . A . . . A C . C . T A . G . . . A . . A . G . G . . . . . A TAT G . C
blockSeqs : . . G . . T . . . . . T . . . C C . C . . A . . . . . A . . C . T . G . . . . . T TG G . .
blockSeqs : . . . . . T . . . . . . . . . . G . . . . . . . . G . . T . . . T . . . . . A TG A .
blockSeqs : .
blockSeqCons : CGT* C*** G* TGT********* CCTTT** ANN* CG GTA***
originalCons : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--CGAATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAGAGTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTATC--TTTTAATNATTTTNAACAATT-AC-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTAA--ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
finalCons : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CCCGT-AGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTTC---AATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAG-GTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAATTGT---------ACTGTTCATTTCATTACCTTT--TAATNATTTTNAACAATTANN-TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGTA---ATTAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGATAAAGACTAAAGAAATTATTTCCTGAAGTATTTACAACAGCATTCAAATTCTTGTACGTAACATGTCAAAATATGTTTAAGGATGTTAAAATATGGAAGGGTTATATACATTTTATTGAC
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 11111 1111 11111 333333333333 3333333 111 11 11111 11111 111111 222222222222222 222 333333 99999999999999999 1 2222 0000000000000000000000000000000 11 1 666666666666666666666 1 1 11 999999999999999999999999999 1
lowQualScore : 5 5 5 7 6 7777 4 4 2 4 4 1 55555 5 1 4 4 2 8 4 777 4 2222 5 4 1 66 66 77777 4 7 0 4 4 4 88 4 4 1 4 777 1 4 777 4 0 0 4 4 777 666666666666 1 7 1 6666666 1 1 777 44 44444 66666 999999 222222222222222 1 0 1 6 333 0 0 0 7 3 000000 1 2 33333333333333333 0 6 3 8888 1 3 9 1 8 3333333333333333333333333333333 33 7 0 444444444444444444444 0 0 2 88 3 7 0 0 0 999999999999999999999999999 6 0 6 0 8 0 0 3
lowQualScore : . . . . . .... . . . . . . ..... . . . . . . . ... . .... . . . .. .. ..... . . . . . . .. . . . . ... . . ... . . . . . ... ............ . . . ....... . . ... .. ..... ..... ...... ............... . . . . ... . . . . . ...... . . ................. . . . .... . . . . . ............................... .. . . ..................... . . . .. . . . . . ........................... . . . . . . . .
lowQualScore : 7 7 7 5 7 4444 4 4 9 4 4 7 66666 0 1 4 4 2 9 4 888 9 1111 0 4 1 11 33 88888 4 2 9 4 4 4 33 4 4 1 4 888 1 4 888 0 7 1 4 4 111 888888888888 9 4 4 3333333 0 0 000 55 33333 77777 222222 888888888888888 0 3 0 7 333 8 8 6 0 2 000000 0 5 33333333333333333 7 7 3 3333 0 2 2 0 8 2222222222222222222222222222222 88 0 5 888888888888888888888 0 0 5 00 2 0 2 2 2 555555555555555555555555555 5 8 5 2 8 2 7 3
consensus : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--C-A-ATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAG-GTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTACC--TTTTAATNATTTTNAACAATTA--TTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGT-AAT---TAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
Reference ( family-297 ) : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CGTAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TTTAATTTGAAA-CCA-TTTTT---AAAGGAAATTTT--C-A-ATTGAAT-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACGCATGAACAA-CTTAG-CTCA-CATGGGAG-GTTAC-GC-TTTAATCGTG-AATTGA---ATGCAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--NATAAAAT-----TG--T--ACTGTTCATTTCATTACC--TTTTAATNATTTTNAACAATTANNTTTGCCGACCTACATGTAAGTAA-----ATGCACATTGATA------ATTTAGCTCACTTGAA-------TA------TTATNATTTAGT-AAT---TAAGTAACAATGAATAGATTTATATTATAGGGAAAACAATATTATTTGGGATNGCTTATTATCTCAA-----------------TTTTCACGTGCCGATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGANATCTTTTTTGAGAANGTACTGTAAGGAAGATAATTAAATAATGAAACAAGCACTTCCTCTTTACTATCTGAGGAGTGA-TA----------TTGGTA-CA--------TT--TCTAACTAAGGAAGTAGGCCGAT-T-T-ATNAA-----TGATGAAATGTGGATTAGC-TCAC-ATAAACCTTGACATTCTCGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTGACGCCTGTGCGGGCTGATCATTTGTCGCTTAAGTTCGAGG-CGCTCTAAAAG
gi|1 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGC------CAAA-CC-------A-GCTAGCAGTCA-CTTAAGAAAATCAT-CA-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-A-TCTAATTTTAAA-CC--TTTTT---AAAGGAAATTTT--TAA-ATTGAAT-TCATG-TTTCAATA--AA-TAAATGCCAAT----AAC-AACACACATGAACAA-CCTAG-CTCA-CATGGGAGAGTTAC-AC-TTTAATCGTG-AATTGA---ATGTAT-ATCA---GTAATTTGCAATGAA-ATGTTGG-A-AGCA--TGTAAAAT-----TG-----ACTTCTCATTTCATTATC-----TAATCATTCTGAACAA-----TTCGC--ACC-ATATATAAGTAA-----A-GTACATTGATA------GTTTAGTTCACGTGAA-------TA------TT-TTATTTCGTAAAT---GAAGTAACAATGAATAGATTTATATGAT-GGGAAAACAATAT------GGATGGTTTATTAT-TCAA-----------------TTTCCATATGTCGATCCTTATGGAATTGTATTGCGTTCCAACCTGTTTTCTGTAAATCAACTGACCTGAAGATTAATTCCCAATTATCTTTCCACAAAAGAAAACAACAAAAAAAAATC--TTGTGAAAAAGTATTATAAGGAAAATAATTAAATAATGAAATAAACACTTCCTCTGTA--ATCTTGGTAGTAAGTAG---------TTGGTATTAGATGCCTCTT--TCTAACTAAAGAAATAGGCT-AT-TGT-ATCAATATTCTGATGATATATAGTACAGTATCACAATAATTCTT----TTCTCGC-TAATGTA--------------------------------------------TGATGACAAGGCAGAGCAAATAAT-AAATAAGATGGGCGACGGCTATGCTAGCTGATCATTTCTCAATTAAGTTCAAGGACACTCTAGAAG
gi|10 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGTCAATAAG-CC-CGTAGAA-GCTAGCAACCA-ATAAGGAAAATCAT-CG-AAGTACT-----GAAAGTACTC-ATAGAAAAAT-ATTTTAATTTGAAA-CCA-TTTTT---AAAGGAATTTTT--T-A-ATAGAAT-TCATGTTTTCAATT--AT-TAAATGTCAAT------------------AACAA-CTTAG-CTCA-CATGGGAA-GTTAC-GC-TTTAATCGAA-AATTGAATCATGTAT-ATCA---GTAATTTGTAATGAA-ATG
gi|11 : ccAGAAAAAT-A-TTTATTTTGAGA-CCA-TTTTC---AAAGGAATTTTT--C-A-ATTAAAC-TCATGTTTTCAATT--AA-TAAATGTCAAT----AAC-AACACACATGAACAA-CTTAG-CTCA-CATGGGAA-GTTAC-GC-TTTAATCGGA-AATTGA---ATGCAT-ATCA---GTAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATATACATG--T--ACTGTTCATATCATTA
gi|12 : TAATTTGTAATGAA-ATGTTGG-A-AGCA--TATAAAATACAGGTA--T--ACTGTTCATTTCATTATC--TT---ATAATTCTTAACAATT----TTGCC-ACCT-----TAAGGAA-----ATGTACATTGATA------GTTTAGCTCACCTGAA-------TA------TTATTATTTAGT-AAT---TAAGTAACATTAAATAGATTTATATGATGGGGAAAACAACAT------GGATGGTTTATTATCTCAtacactctatacgtaa
gi|13 : AGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CATAGAA-GCTAGCAGCCA-ATAAGGAAAATCAT-CG-AAGTACTACCTGGAAAGT
gi|15 : cattcattatttgttcagcttgtataatgtacttcaatatattgtagaaaataaagtatgacactctaagacc-GCAAGCAGCCACCTAGGAAAAAACAT-CA-AAGGCCT-----GAGAGTACTgttttgtatttctaaacaa
gi|16 : agtaacccggttaggccatAGG-CTGAAGC-TAGCAGCCACT-AA-CAGCA
gi|17 : attAAAGTACTC-ATAGAAACAC-A-ATTAATTGTAAA-CCA--TTTT---AAAGGAAATTaaatttaaaccataatgtcatttaa
gi|2 : TAGAA-ACTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTGAAA-ACA-TTTCT---AAAGGAAATTTG--G-A-ATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGAA-A----------ACA--AATAAAAT-----TG--ACAACTTTTT-TTTTAATACCAATTTTAATAAATTTTAACAATTACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAA-------TACCGGTATCATAATCTA-T-AATCAATAAGTAACAATGAATAGATT-ACATTATAGGGAAAACAATATTATTTGGGATTGCTTATTATCTCAAGATCTAGACTGATCGTATTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTATCTCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTCAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTGA-T------------TGGTA-----------TT--TCTAACTAAGGAAGTGGGCCAAT-T-TTATAAA-----------AATGTGGATTAGC-TCAC-ATAAACTTTGACATTC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAA
gi|3 : AGAA--CTAACATACA-ATAAGCAAAGTCAT-CA-AGAGACT-----GAAATTACCC-ATA--AAAAT-A-TTTAATTTGAAA-ACA-TTTCT---AAAGGAAATTTG--G-A-ATTGGAT-ACATGTTTTGAATT--AA-TAAATGTCAAT----TGC-AACACATATGAGCAA-CTTAA-CTTA-CATGGGAG---TAC-AC-CTTTATTGTA-AATAGA---ATTTTT-TCTC---GTAATTTCCAATGA----------A-AACA--AATAAAAT-----TGACA--ACTTTT--TTTAAATACCAATTTTAATAAATTTTAACAATTACATTTGCCGACTTACATGTAATTAA-----ATGCACAGTGATA------ATTTAGCTCAGTTGAATACGCGGTA------TCATAATCTAAT-AATCAATAAGTAACAATGAATAGA-TTACATTATAGGG-AAACAATATTATTTGGGATTGCTTATTATC
gi|4 : A-----------------TTTTCACGTGCCAATTCATATAGAATTGTATTGAATTCAAAACTGTTTTCTGTAAATTAT-TCTCTTGAAGTTTAATTAAC-ATTGTCTTCCCATAAAAGAAATC----AAAAGATATCTTTTTTGAGAATGTACTGTAAGGAAGATAATTAAATAATGAAACAAGTACTTTCTCTTTACTATCTGAGGAGTG---A----------TTGGT---A--------TT--TCTAACTAAGGAAGT-GGCCAAT-T-T-----------TAATAAAATGTGGATTAGC-TCAC-ATAAATCTTGACATTC-CGCATGATATATTCAGTAGTGGAGTTT--------CT-----------------TTGATGACAAGGCAGAGCAAATGATGGAACAAGTTAGGTAACACCTGTGCGGGCTGATCATTTGTCGCTTAAGTTTGAGG-CGCTCTAAAAG
gi|5 : aagatctagactgatcgtAGG-CTGAAGC-TAGCAGCCACT-AACCAGCAGCCAATAAG-CC-CTTAGAA-GCTAGCAGCCA-CTAAGGAAAACCAT-CA-AAGGACT-----GAGAGTACTC-ATAGAAAAAT-A-TCTAATTTAAAA-CCA-CTTTT---AAAGGCAATTTT--C-A-ATTGAAT-TCATGTTTTGAATT--AA-TAAATGTCAAT----AAC-AACAAGCATGAACAA-CTTAG-CTCA-CATGGGAG-TTTAC-AC-TTTAATTGTG-AATTGA---ATTCAT-ATCA---GAACTTTGCAATG-A-ATGTTGG-A-AGCA--AATAAAAT-----TG-----ACCACTCTTTTCATT-----TTCTAATCGTTTTGAATAATTAATTTTGCT-ACCT-----TAAGTAA-----ATGCACATTGATA------ATTTAACGCACCTGAT-------TA------TTATTATTTAGT-CGT---TAAGAAAC
gi|6 : GG-CTGAAGCCTAGCAGCCACTTAACCAGCAGCCATTCAG-CCGCGTAGAAAGCTGCCAGCAC-ATAAG-AAAATCAT-CGCAAGTAC------GTAAGTA-TC-ATTGAAAA-T-A-TTTA-TTTGAAAACCAATTCTTCCCAAAGGAA-TTTT--C-A-ATTAAAC-TCATGTTTTCAATT--AA--AAATGTCAATAGCAAAC-AACACACGAGAACAG-CTTAGTCTCACCATGGGAA-GTT-C-GCATTTAA-CGAGTAATGAA---ATGCATAATCATCTATAATTTGTAATGAA-ATCTTAGTACAGCAAGTGTAAGAT-----AA--T--ACTG-TCATgtcgaa
gi|7 : ccAGGTCTGAAGC-TAGCAGCCACT-AACCAGCAGCCT-TAAGATC-CG-AGAA-GCTAGCAGCCA-ATA-GGAAAATCATTCG-AAGTACTC----GAAAG-GCTCCATAGAAAAATTA-TTTATTGTGAAAACCA-TTTTC---AA-GGAACTTTTATC-AGATTAAAC-TCATGTTTTCAATT--AAGTAAATGTCAAT----AAC-ACCAC---TGAACAATCTTAG-CTCA-CATGGGAA-GTTACAGC-TTTAATCGCA-AA-TGA---ATGCAT-ATCA---GTAATTTGTAA-GAATATGTGTA-A-AGCA--TATAAAAG-----TA--T--ACTGTTCATTTCATTAataacactctatacgt
gi|8 : ccAAAGAAATCTTTT--GAGAAAGTGCTGTAATGAAAATGGTTAAATAATCAAATAAACACTTCCTCCTTAATATTTGAGGAGTAATTACATGTAGCACTTGATG-CA--------TCTATCTAACTAAGAAAGTAGGCTGATAT-T-ATTAA---------GGAATGGGCATTAGT-TAAC-CTGAACTTTGACATT-TCGCATGACATACTCAATAATGAAGTTTTACGATGGCTTCTTATTTCGCTAATATTTGATGACAAGGCAGAACAAATAATAGAACAAGTTAGGGGACGCTT----AGGCTAGTCCTAT-TCTCTTAtatccactt
gi|9 : AATATCATGTTTTGAATTTTAA--ACATGTCAATCG--AATTAACACGCTTGAGCAA-CTTAG-CTCA-CACGGGAG-GTTAC-AC-TTTAATTGTG-AATTTA---ATTCAA-ATCG---GCGCTTTGCAATGAA-AGGTTGG-A-ATAA--AATAAAAG-----TG-----ACCATGC-TTT--TTA-------TAATCATTTTGAACAATTGATTTTGCCACCTTACAAATAAGTAAATTTCATGTACATTAATGATTAACATTTAGCTCACTAGGG-------TA------TTATGAAATAGA-ATT---TTAGTACCAATGAATAGATTTATATTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGATAAAGACTAAAGAAATTATTTCCTGAAGTATTTACAACAGCATTCAAATTCTTGTACGTAACATGTCAAAATATGTTTAAGGATGTTAAAATATGGAAGGGTTATATACATTTTATTGAC