lowQualScore : 11111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 333333333333 3333333 1111 66666666666666666666666666666666666666666666666666 1111 9999999999999999999999999999999999999999999 1111 11 5555555555555555555555555 1111 44444444444444444 1 11 111 1 1 11 1 11 333333333333333 11 11 44444444444444444444444444 11 11111111111111111111111111111111 111 111 111 111111 44444 2222 6666666666666666666666666666666666666666666666666666666666 2222 1111 222222222 111 11 1111 2222222 11 111 44444444 111 111111 66666666666666666 11 2 22 1 11 111 555555555555 1 44444444444444444 1 1 111 1 11 1 11 4444444444 111 2222 111 11 222222 11 1111111 2222 222 4444444 1 1 3333 222 1 1 222 11 222 222222 2 1111111 333333333333 11 11 111 1 11 111 11 111 1 333333333 11
lowQualScore : 5 0 5 2 5 6 444444444444 3 2222222 2222 44444444444444444444444444444444444444444444444444 888 5 5555 4444444444444444444444444444444444444444444 66 888 888 5 66 7777 11 5 5555555555555555555555555 5 6666 0 66666666666666666 0 5 99 2 99 3 3 2 555 0 0 0 33 3 0 99 111111111111111 66 8 8 11 11 0 1 66666666666666666666666666 8 11 44444444444444444444444444444444 88 3 7 3 111 77 6 6 6 3 555 1 666 888888 8 77777 6 6 6 6 6 5555 3 2222222222222222222222222222222222222222222222222222222222 88 8 8888 2222 555555555 3 444 11 99 9999 2222222 8 33 111 3 8 99999999 444 888888 66666666666666666 11 0 99 8 0 7 88 666 888888888888 3 77777777777777777 4 7 3 0 0 777 0 33 0 3 33 7777777777 3 000 0000 2 000 3 33 222222 0 0 33 8888888 1111 2 777 1111111 0 0 5555 000 0 0 222 99 0 777 333333 66 1 5 8 5 8 8 8 8888888 0 333333333333 5 11 8 8 3 3 8 11 444 0 00 3 3 777 33 4 555 3 0 3 2 2 444444444 22
lowQualScore : . . . . . . ............ . ....... .... .................................................. ... . .... ........................................... .. ... ... . .. .... .. . ......................... . .... . ................. . . .. . .. . . . ... . . . .. . . .. ............... .. . . .. .. . . .......................... . .. ................................ .. . . . ... .. . . . . ... . ... ...... . ..... . . . . . .... . .......................................................... .. . .... .... ......... . ... .. .. .... ....... . .. ... . . ........ ... ...... ................. .. . .. . . . .. ... ............ . ................. . . . . . ... . .. . . .. .......... . ... .... . ... . .. ...... . . .. ....... .... . ... ....... . . .... ... . . ... .. . ... ...... .. . . . . . . . ....... . ............ . .. . . . . . .. ... . .. . . ... .. . ... . . . . . ......... ..
lowQualScore : 7 1 7 1 7 0 222222222222 3 0000000 1111 44444444444444444444444444444444444444444444444444 888 0 6666 2222222222222222222222222222222222222222222 99 888 888 0 99 5555 99 0 0000000000000000000000000 7 2222 7 77777777777777777 8 5 88 0 00 2 0 0 888 2 0 0 88 2 0 00 888888888888888 88 0 0 00 00 8 4 00000000000000000000000000 0 00 00000000000000000000000000000000 88 5 5 5 777 77 7 7 7 2 888 0 555 555555 0 22222 7 7 7 7 7 0000 2 8888888888888888888888888888888888888888888888888888888888 88 0 0000 8888 000000000 8 000 00 44 8888 4444444 0 88 000 2 0 00000000 000 000000 66666666666666666 00 0 88 0 0 3 33 000 000000000000 3 33333333333333333 0 3 2 0 0 555 0 88 0 2 88 2222222222 2 222 5555 5 000 0 22 222222 2 2 88 5555555 2222 5 555 0000000 0 0 0000 888 0 0 000 00 8 666 444444 22 8 0 0 0 0 0 0 0000000 8 888888888888 0 00 0 0 2 2 0 00 000 0 22 2 2 555 88 2 222 2 0 2 5 5 555555555 55
consensus : ACA-ATTATTGCT-CAANAATGAAA-TTGAGG------------AAGATATTT-----AAA----CGCCA---A--------ATACCT-AATG-GT-T----------TC----------GACAAACATCC---A-GGCCT----CAA-C-----------CC-AATC------------TC---------GATAT--TAACAT---T---TTACAGA-ATCA--TTATAAAGGAGCTG----AG--AG-T-------------------------GTGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATATTTACAAACTCATATC-ATTAAAACTCA--TACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTC-CCCCAACGAAACAG-CTAGAA--AACT-AAT--GAAAAT-A---G-CTC-GA--CATGTA-GTTTATGCATATTTTAATTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATCC-ACCCCAACCCCT-TG-TGGTC-AAGG-TAC-CCCCTTTCGATGC----------CCCC--------T--CCCAC-TTAAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T--GTCATT-----GC-AA--TT-A-AAATCTAAC-AG-------TT---ATC-T---TCTCAAAAAT--TGCA-----T--TTTTTA--TGAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGCGAATG--AA-GTCTCA-----CA---A-TTCA-AAT-----AATTGT------ANTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-ATATGTACATT-AAAA--TAANTGCA-A-ACGAGCAT-ACTAATGG----T-CAAACTGATCAA--TTT--G-A--TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGNTGACG--TCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCNGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GACTTGC-TTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( gi|2 ) : ACA-ATTATTGCT-CAATAATGAAA-TCGAGG------------AAGACATAT-----AAA----CGCCA---A--------AT------------------------TC----------GACAAACATCC---A-GGCCT----CAA-------------AC-GATC------------TC---------GATAT--TAACAT---T---TTACAGA-ATCA--TTATAAAGGAGCTG----AG--AG-T-------------------------GTGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATATTTACAAACTCATGTA-ATTAAAACCCA--CACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTC-CCTTATCGAAACAG-CTAGAA--AAC--AAT--GAAAAT-----G-CTA-GATACATGTA-GTTTATGCACATTTTAATTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TAC-ACCCTTTCGAT-C----------CCCC--------T--CCCAC-TGAAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T--GTCAAT-----GC-AA--TT-A-AAATCTAAC-A--------TT---ATC-T---TCTCAAAA----TGCA-----G--CTTTTA--TGAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG--AA-GTCTCA-----CA---AATTCA-AAT-----AATAGT------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTGTATACATGTACATT-AAAA--TAAGTGCA-A-ATAAGCAT-ACTAATGG----T-CAAACTGATCAA--TTT--G-A--TTATTT-T--CAGTGACGA---AATTTGA--G----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATGACA--TCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGC-TATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAGATGATATTTTTTTAAAACACCT-----AAATTTTCTACAAGTA--------AT------------------------TC----------GACAAACATCC---A-GGCAT----CAA-------------CCAAATCTCTACAAATA--TC---------GATAT--TAAC-T---T---TTAC-GA-ATCAATTTATAAAGGAGCTG----AGA-AG-T-------------------------GTGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------ACT-----GTAATA
gi|3 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaACA-ATTTATGCT-CAATAATGAAAATTGAGG------------AAGATATTT-----AAA----CGCCA---A--------ATACCTTAATGAGTTTGT--------TT----------GACAAACATCC---A-GGCCT----CAACCCAAACCTCT--AC-AATC------------TC---------GATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTGAAAAAA--AG-TG------------------------GTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-----GTAATA-TTACAAAC-CATATC-ATTAAAACTCG--TACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-T-CCGA--TTACAA--AAACAC-AT-------------TTC-CCCCAACGAAACAG-TTAGAA--AAC---TT--GGAAAT-----GCCTC-GA------TA-GTTTAAGCATATTTTAATAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TG---CCCAACCCCAACTCCT-TG-TGGTCAAAGG-TTT-TCCTTTTCGATGC----------CCCCCTCCCCTTT--CCCAC-TTAAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T--GTCATT-----GCAAA--TTAA-AAATCTAAC-A--------TT---AT--T---TCTCAAAA-----GCA-----T--TTTTTA--TGAAAGTGTAACATCTGA-Aagtctcagactggtcaatattgctcatcccaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|6 : tgatccttttatttatttttgaattatgaaatatttaattACA-ATTATTGCT-CAAAAATGAAA-TTGAGG------------ATGATATTTTTTTAAAA----CACTA---A--------AT------------------------TCTACAGTATTCGACAAACATCC---A-GGCCA----CAA-------------CC-AATC------------TCTACAATATCGATAT--TAACAT---T---TTACAGA-ATCA--TTATAAAGGAGCTG----AG--AG-T-------------------------GTGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACT----TGTAATA
gi|9 : ACA-ACCATTGTT-CAATAATGAAA-TTGAGG------------AAGATATTT-----AAA----CGCCA---A--------ATACCTTAATGAGTAT----------TC----------GACAAACATCCTGCA-GACCT----CAA-------------CC-AATC------------TC---------GATAT--TAACAT---T---TTACAGA-ATCA--TT-TANNNNNNNNN----NN--NN-N-------------------------NNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATATATACAAACTCATATC-AT-----GTCA--TGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCAagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|12 : gatctattattcatttttgaattataaaaattttcaaaaatatttaataACATATTATTGCT-CTAAAATGAAA-TTGAAG------------AGGATGTTTTAA--AAA----CACCA---A--------ATACTCACGTGTACCTTAATGAGTATTT----------GACAAACATCT---A-GGCCT----CAACCAAACTTGAGCTAC-GATC------------TA---------GATAT--CTACATAAAT---TTGCAGA-ATCA--TTATGAAGGAGTTGTC--AGTGGG-T-------------------------GTGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACA----TGTAATATTtac
gi|19 : tattaatttttgaattataaaaaattattaataattaaaaACA-ATTATCGCT-CAATAATGAAA-
gi|13 : gatcttttatttatttttgaattatgaaatattttaataA-ATTATGGCT-CAATAATGAAA-TTGAGG------------AAGATATTT-----AAA----CGCCA---ACTACCTTAATGAGTAA------------------TT----------GACAAACATCC---A-GGCCTAAACCAATCTCT--------AC-AACC------------TC---------GATAT--TAATAT---T---TTACAGATATAA--TTGTAAAGGAGCTG----AG--AG-T-------------------------GTGTGTCCCAAA-A
gi|4 : tcttttatttatttttgaattatgATTT-----AAA----CGCCA---A--------ATACCTTAATGAGTAT----------TC----------GACAAACATCC---A-GGCCT----CAA-------------CC-AATC------------TC---------TACAT--TAACAT---T---TTACAGA-ATCC--TTATAAAGGAGCTG----AA--AG-TANNNNNNNNNNNNNNNNNNNNNNNNNTGTGTCCCAAACATATAGA-G--ATGTTATATTTC--------ATG----CATTATATT-ACAAA-TCATGTCCACTAAAACTCA--TACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTA-CGAAACAG-CTAACA--AACT-AACTGGGAAATAA---G-CT------CA-GTA-GTTTA-GCATTATTTAATTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTATTTT---AAACACA--ACTCT-TGCCA----ACCCCAACCCC--TG-T-GTC-AAGACTAC--CCCTATTGATGC----------CCCT--------T--CCCACTTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT--GTCATT-----GC-
gi|14 : tg--------AT------------------------TC----------GACAAACATCC---ACGGCCCA---CAA-------------CC-AATCTCATACTAATAATC---------GATAG--TTACAT---T---TTACAGA-ATCA--TTATAAAGGAGCTG----AG--AGTT-------------------------GTGTG
gi|8 : tAATATT-----ATTTATATA-TTTACAACCTATTCATTTA-AACTA-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG--ATACAA--A----C-A----AAT-------TTC-CC-------AACAAACGAGAA--AAT--A-T--GA---T-----G-CT------CATAT-----T-TGCATATTTTAAT-----AT--TTA-G-C--TAATTTG------AACC-CA-CC--ATTTT---AAA---A--ATT-T-TGCCA----ACCCCA---CCT-TG-T--TC-A----T----CCCCTCC--C-C----------CCCC--------TTTCCCAC-TTTA-C-------------------CTAA--T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G----GTCATT-----TC-AA--TT-A-A---CTAAC-A--------TT---ATC-T---TCTCAAAA-----GCA--------TTTTTA--TGAA-GT-TAACATGTGA-TTTACTCA-
gi|1 : AAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTC-CTCCAACGAAACAG-CTAGAATAAACTTAATA-GAAAATTATCGG-CTCTGTTATATGTATGATTAT-----TTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATGCCATCC----CCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGAT-CGATGCCCCCTCCCC--------T--TCCACATTAAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA--------TTTTTATC-T---TCTTAAAA----TGCA-----AGTCTTTTA--TGAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G--AATGTCTCA-----CA---A-TTCA-AAT-----AATTGT------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAAATGTAAATA-ATACA-T-AAAATTTAAGTGCA-A-ACAAGCA--ACTAATGGTTTCT-TAAACTGATCAA--TTTTGG-A--TTATTT-TTCCAGTGA-GA---AATTTGA--A----GA-TTTCATTG----AAAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATGACG--TCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGC-TTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCA
gi|6 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTC-CTCCAACGAAACAG-CTAGAA--AAC--TAT--GAAAAC-----G-CTC-GA------TA-GTTTATGCATATTTTAATTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TGCCAT----CCCCAACCCCT-TG-TGGTC-AAGG-TAC-CCCCTTcttaat
gi|18 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatTTGATGCATATTTTAATTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|10 : aaacagctgagagattCAACCCCT-TA-TGGTC-AAGG-TAC-CCCCTTTCAAT-G----------TCC---------T--CCCAC-TAAAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T--GTCACT-----GC-AA--TT-A-AAATCTAGC-AGTGATGTCTT---ATA-TATATATAAAAAAT--TGCA-----T--TCTTTA--TGAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG--AA-GTCTCA-----GA---GTTTCA-AAT-----AATTGT------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGTACATATATACATT-AAAT--TAACAACA-A-ACGAGC
gi|5 : ATCTAAA-AGAAGC---TT---ATCGT---TCTCAAAAATACTTCATTTCTT--TTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAA-A-CTCAGTGTTCATTTAATTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAAAA-------ATGTACAGT-AA-----AAGTGCACACATAAGCCTAACTAATGG----T-CAAACGAAGCAATTTTT--G-AAGTTATTCAA--CAATGACGAC--AAGCTGA--ATCCTGA-TTTCA-TGCAAAAAAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCT---TTGCG--T--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGT-TTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTCc
gi|7 : ATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--TA-----TA---ATGTACATTAAAAA--TAATTGCA-G-ACAAGCAT-ACTAATGG----TCCAAATTTATCAA--TTT--GAA--TTATTT-T--CAGTGACGAAAGAATTTGAACA----GATTTTCA-TGAC--AAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATCGAA-G-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGC-TTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCAact
gi|11 : GCA-A-ACGAGCAT-ACCAATGG----T-TAAAATGGTCAA--TTT--G-A--TTATTT-T--CAGTGACGA---AATTTGA--A----TA-TTTCA-TG----AAAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCAATTA-ATGACG--CCATAAATCGGAAG-TG-TGCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGC-TTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCActattg
gi|16 : TAAAAA---TAG--AACATTCACATTTTGTTGACG-----------GAA-G-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGCctaat
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT
Alignments
lowQualScore : 33333 77777777777777777777777777 999999999999999999999999999999999999999 44444444444444444444444444444444444 22222222222222222 1 11 11 11 222222222 111 111 2222222 666666666666666666 111 111111 33333 11111 22222222222 11111 5555555555555555555 2222 111111111 111 22222222 11 3333333333333333333333333 3333 1111111111 111 1 22222 2222 1 1 2222 3333333 111 11 11 222222 2222 1111 11 11 11 1111 111 2222 1111111 111 111 11 1111 222222222222 111 111 11 111111
lowQualScore : 5 5 1 5 0 33333 5 00000000000000000000000000 66 777 777 4 4 3 111111111111111111111111111111111111111 66 777 777 4 66 66 66666666666666666666666666666666666 4 5 9999 99999999999999999 0 0 6 8 11 8 8 11 0 8 11 33 5 000000000 6 6 000 99 6 6 111 6 1 99 9999999 333333333333333333 7 5 1 5 1 000 5 5 5 5 1 77 77 444444 6 77777 5 5 4 5 5 1 5 1 66666 44444444444 66666 6 6 1111111111111111111 6 6 3333 3 99 999999999 1 111 99 44 55555555 6 6 11 8 8 0 9999999999999999999999999 9999 8888888888 99 1 6 8 2 3 777 0 55555 4444 0 0 1111 2222222 1 3 0 8 8 444 8 11 8 0 11 0 5 555555 5 0000 1 999 88 7777 8 11 11 99 5555 8 444 8888 8 8 9999999 444 8 8 888 55 44 99 44 3 2 6 2 6 6 6 4444 7 555555555555 3 99 6 6 1 1 6 99 111 6 8 0 0 444 11 1 8 0 6 222222 8
lowQualScore : . . . . . ..... . .......................... .. ... ... . . . ....................................... .. ... ... . .. .. ................................... . . .... ................. . . . . .. . . .. . . .. .. . ......... . . ... .. . . ... . . .. ....... .................. . . . . . ... . . . . . .. .. ...... . ..... . . . . . . . . ..... ........... ..... . . ................... . . .... . .. ......... . ... .. .. ........ . . .. . . . ......................... .... .......... .. . . . . . ... . ..... .... . . .... ....... . . . . . ... . .. . . .. . . ...... . .... . ... .. .... . .. .. .. .... . ... .... . . ....... ... . . ... .. .. .. .. . . . . . . . .... . ............ . .. . . . . . .. ... . . . . ... .. . . . . ...... .
lowQualScore : 0 0 0 0 6 88888 0 99999999999999999999999999 11 888 888 4 4 9 333333333333333333333333333333333333333 11 888 888 4 11 11 00000000000000000000000000000000000 4 0 9999 55555555555555555 6 8 8 0 88 0 0 00 8 0 66 66 7 777777777 7 7 888 22 7 7 777 7 0 22 7777777 666666666666666666 9 7 7 7 7 000 7 7 7 7 4 11 99 666666 7 00000 7 7 3 7 7 7 7 0 77777 33333333333 77777 7 7 7777777777777777777 7 7 3333 5 22 333333333 7 777 22 88 00000000 7 7 00 0 0 8 3333333333333333333333333 8888 5555555555 22 0 7 0 0 2 555 0 00000 0000 0 0 2222 5555555 0 2 8 0 0 000 0 00 0 8 00 8 6 000000 6 8888 0 888 88 0000 0 00 00 00 2222 0 000 0000 0 0 0000000 888 0 0 333 88 33 22 22 2 5 7 5 7 7 7 2222 2 000000000000 3 22 7 7 0 0 7 22 777 7 0 8 8 000 00 8 0 8 4 888888 0
consensus : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAACGCC-AAATAC-C-----------T-AATGAGTA-T--T---CGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATATTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTC-G--A-A-GTAGTTT-ATGCATATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------T--CCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-T--------TCTCAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-ATAT-GTACATTAAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----TC-AAACTGATCAA--TTT--GAA-TTATTT-T--CAGTGACGA-AA---TTTGAA----GATTT-CA-TG----A--AAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( family-2941 ) : ACA-ATTATTGCT-CAANAATGAAA-TTGAGGAAGATATTT-----AAACGCC-AAATAC-C-----------T-AATG-GT--T--T---CGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATATTTACAAACTCATATC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----AGCTC-G--ACATGTAGTTT-ATGCATATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATCC-ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------T--CCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-T--------TCTCAAAAAT--TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGCGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ANTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-ATAT-GTACATTAAAA--TAANTGCAAAC--GAGCAT-ACTAATGG----TC-AAACTGATCAA--TTT--GA--TTATTT-T--CAGTGACGA-AA---TTTGAA----GATTT-CA-TG----A--AAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGNTG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCNGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAG-ATGATATTTTTTTAAAACACCTAAATTTTC-----------T-ACAA-GTAAT--T---CGACAAACATC---CA-GGCAT-CAACC------------AAA----------TCTCTACAAATA--TCGATATTA--AC-T---TT---TAC-GA-ATCAATTTATAAAGGAGCTG--AGA-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------ACT-----GTAATA
gi|1 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaAAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTCCTCCAACGAAACAGCTAGAATAAACTTAATA-GAAAATTATCGGCTCTGTTATATGTA--TG-AT---TATTTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATGCCATCC----CCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGATCGATGCCCCC--------T--CCCCTTCCACATT-AAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA----T--TTTTATC-T--------TCTTAAAA----TGCAAGTCT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G---AATGTC-----TCA--C-AA-TTCA-AA----TAATTGT-------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAAATGTA-A-ATAATACA-TAAAATTTAAGTGCAAAC--AAGCA--ACTAATGGTTTCTT-AAACTGATCAA--TTTTGGA--TTATTT-TTCCAGTGA-GA-AA---TTTGAA----GATTT-CATTG----A--AAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATG--ACGTCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGCTTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCAagtctcagactggtcaatattgctcatcccaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|10 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatCAACCCCT-TA-TGGTC-AAGG-TACC-CCCTTTCAAT----GTCC----------T--CCC-----AC-TA-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T------GTCACT-GC-AA--TT-A-AAATCTAGCAG----TGAT---GTC-TTATATATATATAAAAAAT--TGCA--TTC-----TTTAT--GAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--G-AGTTTCA-AA----TAATTGT-------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGTACATAT-ATACATTAAAT--TAACAACAAAC--GAGCcttaat
gi|11 : GCAAAC--GAGCAT-ACCAATGG----TT-AAAATGGTCAA--TTT--GA--TTATTT-T--CAGTGACGA-AA---TTTGAA----TATTT-CA-TG----A--AAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCA-ATTAATG--ACGCCATAAATCGGAAG-TG-TGCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCAc
gi|12 : ACATATTATTGCT-CTAAAATGAAA-TTGAAGAGGATGTTTTAA--AAACACC-AAATAC-TCACGTGTACCTT-AATGAGTA-T--T---TGACAAACATC---TA-GGCCT-CAACCAAACTTGAGCTACGA----------TC------------TAGATATCT--ACATAAATT---TGCAGA-ATCA--TTATGAAGGAGTTGTCAGTGG----G-T-------------------------G-TGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACA----TGTAATATTctaat
gi|13 : tattaatttttgaattataaaaaattattaataattaaaaA-ATTATGGCT-CAATAATGAAA-TTGAGGAAGATATTT-----AAACGCC-AACTAC-CT----------T-AATG-AG--TAAT---TGACAAACATC---CA-GGCCT-AAACCAATCTCTA----CAA----------CC------------TCGATATTA--ATAT---TT---TACAGATATAA--TTGTAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-A
gi|14 : tcttttatttatttttgaattatg--T--T---CGACAAACATC---CACGGCCCACAA-C------------CAA----------TCTCATACTAATAATCGATAGTT--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----GTT-------------------------G-TGTG
gi|16 : taTAAAAA---TAG--AACATTCACATTTTGTTG--ACG----------GAAG-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGC
gi|18 : AAAC----AGCT--G--AGAGAT--TTTGATGCATATTTTAA-TTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|19 : ACA-ATTATCGCT-CAATAATGAAA-
gi|2 : gatcttttatttatttttgaattatgaaatattttaataACA-ATTATTGCT-CAATAATGAAA-TCGAGGAAGACATAT-----AAACGCC-AAAT-----------------------------T---CGACAAACATC---CA-GGCCT-CAAAC-------------GA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATATTTACAAACTCATGTA-ATTAAAACCCACACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCTTATCGAAACAGCTAGAA--AAC--AAT--GAAAAT-----GCTA-GATACATGTAGTTT-ATGCACATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TACA-CCCTTTCGAT-----CCCCC--------T--CCC-----AC-TG-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCAAT-GC-AA--TT-A-AAATCTAACA-----T--T---ATC-T--------TCTCAAAA----TGCA--GCT-----TTTAT--GAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--CAAA-TTCA-AA----TAATAGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTGTATACAT-GTACATTAAAA--TAAGTGCAAAT--AAGCAT-ACTAATGG----TC-AAACTGATCAA--TTT--GA--TTATTT-T--CAGTGACGA-AA---TTTGAG----GATTT-CA-TG----A--AAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATG--ACATCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|3 : ACA-ATTTATGCT-CAATAATGAAAATTGAGGAAGATATTT-----AAACGCC-AAATAC-C-----------TTAATGAGT--T--TGTTTGACAAACATC---CA-GGCCT-CAACC------------CAAACCTCTACAATC------------TCGATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTG--AA--AAAAAG-T-------------------------GGTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-----GTAATATT-ACAAAC-CATATC-ATTAAAACTCGTACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-TCC-GA--TTACAA--AAACAC-AT-------------TTCCCCCAACGAAACAGTTAGAA--AACT---T--GGAAAT----GCCTC-G--A----TAGTTT-AAGCATATTTTAA-TAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TGCC--CA-ACCCCAACTCCT-TG-TGGTCAAAGG-TTTT-CCTTTTCGAT----GCCCCCCTCCCCTTT--CCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T------GTCATT-GCAAA--TTAA-AAATCTAACA-----T--T---AT--T--------TCTCAAAA-----GCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-A
gi|4 : tgatccttttatttatttttgaattatgaaatatttaattATTT-----AAACGCC-AAATAC-C-----------TTAATGAGTA-T--T---CGACAAACATC---CA-GGCCT-CAACC-------------AA----------TC------------TCTACATTA--ACAT---TT---TACAGA-ATCC--TTATAAAGGAGCTG--AA--A----G-TANNNNNNNNNNNNNNNNNNNNNNNNN-TGTGTCCCAAACATATAGA-G--ATGTTATATTTC--------ATG----CATTATATT-ACAAA-TCATGTCCACTAAAACTCATACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTACGAAACAGCTAACA--AACT-AACTGGGAAATA---AGCTC-A------GTAGTTT-A-GCATTATTTAA-TTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTA-TTTT--AAACACA--ACTCT-TGCCA----ACCCCAACCCC--TG-T-GTC-AAGACTA-C-CCCTATTGAT----GCCCCT--------T--CCC-----AC-TTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT------GTCATT-GC-
gi|5 : tgATCTAAAAGAAGCT--T---ATCGT--------TCTCAAAAATACTTCA--TTTCTTTTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAAA-CTCAGTGTTCATTT-AA-TTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAAAA-------AT-GTACAGTAA-----AAGTGCACACATAAGCCTAACTAATGG----TC-AAACGAAGCAATTTTT--GAAGTTATTCAA--CAATGACGACAA---GCTGAATCCTGATTT-CA-TGCAAAA--AAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCTT--TG---CGT--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGTTTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTC
gi|6 : ACA-ATTATTGCT-CAAAAATGAAA-TTGAGGATGATATTTTTTTAAAACACT-AAAT-T-C-----------T-A-CA-GTA-T--T---CGACAAACATC---CA-GGCCA-CAACCAATCTCTA----CAA----------TA------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACT----TGTAATAact
gi|6 : AAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTCCTCCAACGAAACAGCTAGAA--AACT--AT--GAAAAC-----GCTC-G--A----TAGTTT-ATGCATATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TGCCAT----CCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|7 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--TA-----TA-AT---GTACATTAAAAA-TAATTGCAGAC--AAGCAT-ACTAATGG----TCCAAATTTATCAA--TTT--GAA-TTATTT-T--CAGTGACGA-AAGAATTTGAACA--GATTTTCA-TG----ACAAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATC-GAAG-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGCTTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCA
gi|8 : ATATT----------ATT----TATA-TATTTACAACCT-AT-TC-ATTTAAACT-------------A-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG-----------------ATACAAACA---AA-TTTCCC-AAC-AAACG---AGAA--AAT---AT--GA---T-----GCTC-A-------TA--TT--TGCATATTTTAA-T-----AT--TTA-G-C--TAATTTG------AACC-CA-CC--ATTTT---AAA---A--ATT-T-TGCCA----ACCCCA---CCT-TG-T--TC-A------TC-CCCTCCC--------CCCCC--------TTTCCC-----AC-TT-TA-C-------------------CTAA--T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G--------GTCATT-TC-AA--TT-A-A---CTAACA-----T--T---ATC-T--------TCTCAAAA-----GCA---TT-----TTTAT--G-AAGT-TAACATGTGA-TTTACTCA-ctattg
gi|9 : aACA-ACCATTGTT-CAATAATGAAA-TTGAGGAAGATATTT-----AAACGCC-AAATAC-CT----------T-AATGAGTA-T--T---CGACAAACATCCTGCA-GACCT-CAA-C------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TT-TANNNNNNNNN--NN--N----N-N-------------------------N-NNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATATATACAAACTCATATC-AT-----GTCATGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT
Alignments
lowQualScore : 22222 4444444444444444 999999999999999999999999999999999999999 44444444444444444444444444444444444 22222222222222222 11 11 11 222222222 111 111 2222222 55555555555555555 1111 111 111111 33333 11111 33333333 11111 5555555555555555555 2222 111111111 111 22222222 11 333333333333 2222222 33333 1111111111 111 1 22222 2222 1 1 2222 3333333 111 11 11 333 1111 1111 11 111 1111 222 2222222 2222 111 111 11 1111 222222222222 111 111 11 111111
lowQualScore : 5 5 0 5 0 5 44444 66 5 0000000000000000 2 66 4 777 4 4 3 111111111111111111111111111111111111111 66 777 777 4 66 66 66666666666666666666666666666666666 4 5 9999 99999999999999999 66 7 6 3 6 1 8 8 11 0 8 11 33 5 000000000 6 6 000 99 6 6 111 6 99 9999999 4 33333333333333333 0 999 1 2222 5 1 000 5 5 5 5 5 1 77 5 77 444444 6 99999 5 5 4 5 5 1 5 1 66666 33333333 66666 6 6 1111111111111111111 6 6 3333 3 99 999999999 1 111 99 44 55555555 6 6 11 8 8 0 444444444444 6 1111111 33333 8888888888 99 1 6 8 3 777 0 55555 4444 0 0 1111 2222222 0 3 0 8 8 444 8 11 8 0 11 0 5 555 8 5 8 2222 999 88 7777 8 99 222 5555 222 2222222 8 8 8888 444 8 8 888 55 888 99 44 3 2 6 1 6 6 6 4444 7 555555555555 2 99 6 6 1 1 6 99 111 6 8 0 0 444 11 1 8 0 6 222222 8
lowQualScore : . . . . . . ..... .. . ................ . .. . ... . . . ....................................... .. ... ... . .. .. ................................... . . .... ................. .. . . . . . . . .. . . .. .. . ......... . . ... .. . . ... . .. ....... . ................. . ... . .... . . ... . . . . . . .. . .. ...... . ..... . . . . . . . . ..... ........ ..... . . ................... . . .... . .. ......... . ... .. .. ........ . . .. . . . ............ . ....... ..... .......... .. . . . . ... . ..... .... . . .... ....... . . . . . ... . .. . . .. . . ... . . . .... ... .. .... . .. ... .... ... ....... . . .... ... . . ... .. ... .. .. . . . . . . . .... . ............ . .. . . . . . .. ... . . . . ... .. . . . . ...... .
lowQualScore : 0 0 8 0 6 0 55555 99 0 4444444444444444 0 11 4 888 4 4 9 333333333333333333333333333333333333333 11 888 888 4 11 11 00000000000000000000000000000000000 4 0 9999 55555555555555555 99 3 7 7 7 5 0 0 00 8 0 66 66 7 777777777 7 7 888 22 7 7 777 7 22 7777777 2 33333333333333333 7 444 7 1111 7 7 000 7 7 7 4 7 4 11 0 99 666666 7 55555 7 7 3 7 7 7 7 0 77777 33333333 77777 7 7 7777777777777777777 7 7 3333 5 22 333333333 7 777 22 88 00000000 7 7 00 0 0 8 777777777777 7 7777777 22222 5555555555 22 0 7 0 2 555 0 00000 0000 0 0 2222 5555555 8 2 8 0 0 000 0 00 0 8 00 8 6 000 0 6 0 8888 888 88 0000 0 00 666 2222 000 0000000 0 0 0000 888 0 0 333 88 222 22 22 2 5 7 0 7 7 7 2222 2 000000000000 5 22 7 7 0 0 7 22 777 7 0 8 8 000 00 4 0 8 4 888888 0
consensus : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAAT-TTTGAA-TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( family-2941 ) : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-ATAT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAA--TTTGAA-TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAG-ATGATATTTTTTTAAAA--CACCTAAATTTT-----------C-TACAAGT--AATTCGACAAACATC---CA-GGCAT-CAACC------------AAA----------TCTCTACAAATA--TCGATATTA--AC-T---TT---TAC-GA-ATCAATTTATAAAGGAGCTG--AGA-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------ACT-----GTAATAAGTCT-CAGACT--GGTC-AATATTGCTCATCCC
gi|1 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaAAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTCCTCCAACGAAACAGCTAGAATAAACTTAATA-GAAAATTATCGGCTC--------T-GTTAT-ATGTATGATTATTTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATGCCATC----CCCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGATCGATGCCCCC--------TCCCCTTCCACATT-AAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA----T--TTTTATC-TTCT-------TAAAA----TGCAAGTCT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G---AATGTC-----TCA--C-AA-TTCA-AA----TAATTGT-------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAAATGTA-A-ATAATACA-T-AAAATTTAAGTGCAAAC--AAGCA--ACTAATGGTTTCT-TAAACTGATCAAT-TTTGGA-TTATTT-TTCCAGTGA-GA---AATTTGA--A----GA-TTTCATTG----AAAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATG--ACGTCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGCTTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCAaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|10 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatCAACCCCT-TA-TGGTC-AAGG-TACC-CCCTTTCAAT----GTCC----------TCCC-----AC-TA-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T------GTCACT-GC-AA--TT-A-AAATCTAGCAG----TGAT---GTC-TTATATATATATAAAAAAT-TGCA--TTC-----TTTAT--GAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--G-AGTTTCA-AA----TAATTGT-------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGTACATAT-ATACATT-AAAT--TAACAACAAAC--GAGCcttaat
gi|11 : GCAAAC--GAGCAT-ACCAATGG----T-TAAAATGGTCAA--TTTGA--TTATTT-T--CAGTGACGA---AATTTGA--A----TA-TTTCA-TG----AAAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCAATT-AATG--ACGCCATAAATCGGAAG-TGT-GCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCAc
gi|12 : ACATATTATTGCT-CTAAAATGAAA-TTGAAGAGGATGTTTT----AAAAACACC-AAATACTCACGTGTACCTT-AATGAGT--A-TTTGACAAACATC---TA-GGCCT-CAACCAAACTTGAGCTACGA----------TC------------TAGATATCT--ACATAAATT---TGCAGA-ATCA--TTATGAAGGAGTTGTCAGTGG----G-T-------------------------G-TGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACA----TGTAATA--TTctaat
gi|13 : tattaatttttgaattataaaaaattattaataattaaaaA-ATTATGGCT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AACTACCT----------T-AATGAGT--A-ATTGACAAACATC---CA-GGCCT-AAACCAATCTCTA----CAA----------CC------------TCGATATTA--ATAT---TT---TACAGATATAA--TTGTAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-A
gi|14 : tcttttatttatttttgaattatgT--A-TTCGACAAACATC---CACGGCCCACAA-C------------CAA----------TCTCATACTAATAATCGATAGTT--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----GTT-------------------------G-TGTG
gi|16 : TAAAAA---TAG--AACATTCACATTTTGTTG--ACG----------GAAG-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGC
gi|18 : AAAC----AGCTGAG-A---G-ATTT-TGATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|19 : ACA-ATTATCGCT-CAATAATGAAA-
gi|2 : gatcttttatttatttttgaattatgaaatattttaataACA-ATTATTGCT-CAATAATGAAA-TCGAGGAAGACATAT-----AAA--CGCC-AAAT----------------------------TCGACAAACATC---CA-GGCCT-CAAAC-------------GA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTA-ATTAAAACCCACACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCTTATCGAAACAGCTAGAA--AAC--AAT--GAAAAT-----GCTAGATACATGTAGTT-T-ATGCAC----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TACA-CCCTTTCGAT-----CCCCC--------TCCC-----AC-TG-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCAAT-GC-AA--TT-A-AAATCTAACA-----T--T---ATC-TTCT-------CAAAA----TGCA--GCT-----TTTAT--GAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--CAAA-TTCA-AA----TAATAGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTGTATACAT-GTACATT-AAAA--TAAGTGCAAAT--AAGCAT-ACTAATGG----T-CAAACTGATCAA--TTTG-A-TTATTT-T--CAGTGACGA---AATTTGA--G----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATG--ACATCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|3 : ACA-ATTTATGCT-CAATAATGAAAATTGAGGAAGATATTT-----AAA--CGCC-AAATACC-----------TTAATGAGTTTG-TTTGACAAACATC---CA-GGCCT-CAACC------------CAAACCTCTACAATC------------TCGATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTG--AA--AAAAAG-T-------------------------GGTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-----GTAATA--TT-ACAAAC-CATATC-ATTAAAACTCGTACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-TCC-GA--TTACAA--AAACAC-AT-------------TTCCCCCAACGAAACAGTTAGAA--AACT---T--GGAAAT----GCCTCGA------TAGTT-T-AAGCAT----ATTTTAA-TAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TGCC--CA-ACCCCAACTCCT-TG-TGGTCAAAGG-TTTT-CCTTTTCGAT----GCCCCCCTCCCCTTTCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T------GTCATT-GCAAA--TTAA-AAATCTAACA-----T--T---AT--TTCT-------CAAAA-----GCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-A
gi|4 : tgatccttttatttatttttgaattatgaaatatttaattTTT----AAA--CGCC-AAATACC-----------TTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC-------------AA----------TC------------TCTACATTA--ACAT---TT---TACAGA-ATCC--TTATAAAGGAGCTG--AA--A----G-TANNNNNNNNNNNNNNNNNNNNNNNNN-TGTGTCCCAAACATATAGA-G--ATGTTATATTTC--------ATG----CATTATA--TT-ACAAA-TCATGTCCACTAAAACTCATACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTACGAAACAGCTAACA--AACT-AACTGGGAAATA---AGCTC---A---GTAGTT-T-A-GCAT----TATTTAA-TTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTA-TTTT--AAACACA--ACTCT-TGCCA----ACCCCAACCCC--TG-T-GTC-AAGACTA-C-CCCTATTGAT----GCCCCT--------TCCC-----AC-TTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT------GTCATT-GC-
gi|5 : tgaATCTAAAAGAAGCT--T---ATCGTTCT-------CAAAAATACTTCA--TTTCTTTTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAAA-CTCAGTGTTCATTT-AA-TTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAAAA-------AT-GTACAGT-AA-----AAGTGCACACATAAGCCTAACTAATGG----T-CAAACGAAGCAATTTTTGAAGTTATTCAA--CAATGACGAC--AAGCTGA--ATCCTGA-TTTCA-TGCAAAAAAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCTT--TG---CGT--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGTTTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTC
gi|6 : ACA-ATTATTGCT-CAAAAATGAAA-TTGAGGATGATATTTTTTTAAAA--CACT-AAAT-TC-----------T-AC--AGT--A-TTCGACAAACATC---CA-GGCCA-CAACCAATCTCTA----CAA----------TA------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACT----TGTAATA--act
gi|6 : AAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTCCTCCAACGAAACAGCTAGAA--AACT-A-T--GAAAAC----G-CTCGA------TAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TGCCAT----CCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|7 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--TA-----TA---AT-GTACATTAAAAA--TAATTGCAGAC--AAGCAT-ACTAATGG----TCCAAATTTATCAA--TTTGAA-TTATTT-T--CAGTGACGAAAGAATTTGAACA----GATTTTCA-TGAC--AAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATC-GAAG-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGCTTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCA
gi|8 : ATATT----------ATT----TATA-TA--TTTACAACCT-AT-TC-ATTTAAACT-------------A-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG-----------------ATACAAACA---AA-TT-TCCCAAC-AAACG---AGAA--AAT---AT--G---AT-----GCTC-------ATA-TT----TGCAT----ATTTTAA-T-----AT--TTA-G-C--TAATT------TGAACC-CA-CC--A-TTTT--AAA---A--ATT-T-TGCCA----ACCCCA---CCT-TG-T--TC-------ATC-CCCTCCC--------CCCCCTT------TCCC-----AC-TT--TAC-------------------CT-AA-T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G--------GTCATT-TC-AA--TT-A-A---CTAACA-----T--T---ATC-TTCT-------CAAAA-----GCA---TT-----TTTAT--G-AAGT-TAACATGTGA-TTTACTCA-ctattg
gi|9 : aACA-ACCATTGTT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AAATACCT----------T-AATGAGT--A-TTCGACAAACATCCTGCA-GACCT-CAA-C------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TT-TANNNNNNNNN--NN--N----N-N-------------------------N-NNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATA--TATACAAACTCATATC-AT-----GTCATGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT
Alignments
lowQualScore : 22222 4444444444444444 999999999999999999999999999999999999999 44444444444444444444444444444444444 22222222222222222 11 11 11 222222222 111 111 2222222 55555555555555555 1111 111 111111 33333 11111 33333333 11111 5555555555555555555 2222 111111111 111 22222222 11 333333333333 2222222 33333 1111111111 111 1 22222 2222 1 1 2222 3333333 111 11 11 222222222 1111 1111 1 1111 222 2222222 2222 111 111 11 1111 222222222222 111 111 11 111111
lowQualScore : 5 5 0 5 0 5 44444 66 5 0000000000000000 2 66 4 777 4 4 3 111111111111111111111111111111111111111 66 777 777 4 66 66 66666666666666666666666666666666666 4 5 9999 99999999999999999 66 7 6 3 6 1 8 8 11 0 8 11 33 5 000000000 6 6 000 99 6 6 111 6 99 9999999 4 33333333333333333 0 999 1 2222 5 1 000 5 5 5 5 5 1 77 5 77 444444 6 99999 5 5 4 5 5 1 5 1 66666 33333333 66666 6 6 1111111111111111111 6 6 3333 3 99 999999999 1 111 99 44 55555555 6 6 11 8 8 0 444444444444 6 1111111 33333 8888888888 99 1 6 8 3 777 0 55555 4444 0 0 1111 2222222 0 3 0 8 8 444 8 11 8 0 11 0 444444444 8 5 8 2222 999 88 7777 8 88 0 8 5555 222 2222222 8 8 8888 444 8 8 888 55 888 99 44 3 2 6 1 6 6 6 4444 7 555555555555 2 99 6 6 1 1 6 99 111 6 8 0 0 444 11 1 8 0 6 222222 8
lowQualScore : . . . . . . ..... .. . ................ . .. . ... . . . ....................................... .. ... ... . .. .. ................................... . . .... ................. .. . . . . . . . .. . . .. .. . ......... . . ... .. . . ... . .. ....... . ................. . ... . .... . . ... . . . . . . .. . .. ...... . ..... . . . . . . . . ..... ........ ..... . . ................... . . .... . .. ......... . ... .. .. ........ . . .. . . . ............ . ....... ..... .......... .. . . . . ... . ..... .... . . .... ....... . . . . . ... . .. . . .. . ......... . . . .... ... .. .... . .. . . .... ... ....... . . .... ... . . ... .. ... .. .. . . . . . . . .... . ............ . .. . . . . . .. ... . . . . ... .. . . . . ...... .
lowQualScore : 0 0 8 0 6 0 55555 99 0 4444444444444444 0 11 4 888 4 4 9 333333333333333333333333333333333333333 11 888 888 4 11 11 00000000000000000000000000000000000 4 0 9999 55555555555555555 99 3 7 7 7 5 0 0 00 8 0 66 66 7 777777777 7 7 888 22 7 7 777 7 22 7777777 2 33333333333333333 7 444 7 1111 7 7 000 7 7 7 4 7 4 11 0 99 666666 7 55555 7 7 3 7 7 7 7 0 77777 33333333 77777 7 7 7777777777777777777 7 7 3333 5 22 333333333 7 777 22 88 00000000 7 7 00 0 0 8 777777777777 7 7777777 22222 5555555555 22 0 7 0 2 555 0 00000 0000 0 0 2222 5555555 8 2 8 0 0 000 0 00 0 8 00 8 666666666 0 6 0 8888 888 88 0000 0 88 6 0 2222 000 0000000 0 0 0000 888 0 0 333 88 222 22 22 2 5 7 0 7 7 7 2222 2 000000000000 5 22 7 7 0 0 7 22 777 7 0 8 8 000 00 4 0 8 4 888888 0
consensus : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAA-TTTTGGA-TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( family-2941 ) : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAA-TTTTGAA-TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAG-ATGATATTTTTTTAAAA--CACCTAAATTTT-----------C-TACAAGT--AATTCGACAAACATC---CA-GGCAT-CAACC------------AAA----------TCTCTACAAATA--TCGATATTA--AC-T---TT---TAC-GA-ATCAATTTATAAAGGAGCTG--AGA-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------ACT-----GTAATAAGTCT-CAGACT--GGTC-AATATTGCTCATCCC
gi|1 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaAAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTCCTCCAACGAAACAGCTAGAATAAACTTAATA-GAAAATTATCGGCTC--------T-GTTAT-ATGTATGATTATTTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATGCCATC----CCCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGATCGATGCCCCC--------TCCCCTTCCACATT-AAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA----T--TTTTATC-TTCT-------TAAAA----TGCAAGTCT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G---AATGTC-----TCA--C-AA-TTCA-AA----TAATTGT-------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAAATGTA-A-ATAATACA-T-AAAATTTAAGTGCAAAC--AAGCA--ACTAATGGTTTCT-TAAACTGATCAA-TTTTGGA-TTATTT-TTCCAGTGA-GA---AATTTGA--A----GA-TTTCATTG----AAAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATG--ACGTCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGCTTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCAaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|10 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatCAACCCCT-TA-TGGTC-AAGG-TACC-CCCTTTCAAT----GTCC----------TCCC-----AC-TA-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T------GTCACT-GC-AA--TT-A-AAATCTAGCAG----TGAT---GTC-TTATATATATATAAAAAAT-TGCA--TTC-----TTTAT--GAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--G-AGTTTCA-AA----TAATTGT-------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGTACATAT-ATACATT-AAAT--TAACAACAAAC--GAGCcttaat
gi|11 : GCAAAC--GAGCAT-ACCAATGG----T-TAAAATGGTCAA-TTT--GA-TTATTT-T--CAGTGACGA---AATTTGA--A----TA-TTTCA-TG----AAAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCAATT-AATG--ACGCCATAAATCGGAAG-TGT-GCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCAc
gi|12 : ACATATTATTGCT-CTAAAATGAAA-TTGAAGAGGATGTTTT----AAAAACACC-AAATACTCACGTGTACCTT-AATGAGT--A-TTTGACAAACATC---TA-GGCCT-CAACCAAACTTGAGCTACGA----------TC------------TAGATATCT--ACATAAATT---TGCAGA-ATCA--TTATGAAGGAGTTGTCAGTGG----G-T-------------------------G-TGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACA----TGTAATA--TTctaat
gi|13 : tattaatttttgaattataaaaaattattaataattaaaaA-ATTATGGCT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AACTACCT----------T-AATGAGT--A-ATTGACAAACATC---CA-GGCCT-AAACCAATCTCTA----CAA----------CC------------TCGATATTA--ATAT---TT---TACAGATATAA--TTGTAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-A
gi|14 : tcttttatttatttttgaattatgT--A-TTCGACAAACATC---CACGGCCCACAA-C------------CAA----------TCTCATACTAATAATCGATAGTT--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----GTT-------------------------G-TGTG
gi|16 : TAAAAA---TAG--AACATTCACATTTTGTTG--ACG----------GAAG-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGC
gi|18 : AAAC----AGCTGAG-A---G-ATTT-TGATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|19 : ACA-ATTATCGCT-CAATAATGAAA-
gi|2 : gatcttttatttatttttgaattatgaaatattttaataACA-ATTATTGCT-CAATAATGAAA-TCGAGGAAGACATAT-----AAA--CGCC-AAAT----------------------------TCGACAAACATC---CA-GGCCT-CAAAC-------------GA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTA-ATTAAAACCCACACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCTTATCGAAACAGCTAGAA--AAC--AAT--GAAAAT-----GCTAGATACATGTAGTT-T-ATGCAC----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TACA-CCCTTTCGAT-----CCCCC--------TCCC-----AC-TG-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCAAT-GC-AA--TT-A-AAATCTAACA-----T--T---ATC-TTCT-------CAAAA----TGCA--GCT-----TTTAT--GAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--CAAA-TTCA-AA----TAATAGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTGTATACAT-GTACATT-AAAA--TAAGTGCAAAT--AAGCAT-ACTAATGG----T-CAAACTGATCAA-TTT--GA-TTATTT-T--CAGTGACGA---AATTTGA--G----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATG--ACATCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|3 : ACA-ATTTATGCT-CAATAATGAAAATTGAGGAAGATATTT-----AAA--CGCC-AAATACC-----------TTAATGAGTTTG-TTTGACAAACATC---CA-GGCCT-CAACC------------CAAACCTCTACAATC------------TCGATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTG--AA--AAAAAG-T-------------------------GGTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-----GTAATA--TT-ACAAAC-CATATC-ATTAAAACTCGTACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-TCC-GA--TTACAA--AAACAC-AT-------------TTCCCCCAACGAAACAGTTAGAA--AACT---T--GGAAAT----GCCTCGA------TAGTT-T-AAGCAT----ATTTTAA-TAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TGCC--CA-ACCCCAACTCCT-TG-TGGTCAAAGG-TTTT-CCTTTTCGAT----GCCCCCCTCCCCTTTCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T------GTCATT-GCAAA--TTAA-AAATCTAACA-----T--T---AT--TTCT-------CAAAA-----GCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-A
gi|4 : tgatccttttatttatttttgaattatgaaatatttaattTTT----AAA--CGCC-AAATACC-----------TTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC-------------AA----------TC------------TCTACATTA--ACAT---TT---TACAGA-ATCC--TTATAAAGGAGCTG--AA--A----G-TANNNNNNNNNNNNNNNNNNNNNNNNN-TGTGTCCCAAACATATAGA-G--ATGTTATATTTC--------ATG----CATTATA--TT-ACAAA-TCATGTCCACTAAAACTCATACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTACGAAACAGCTAACA--AACT-AACTGGGAAATA---AGCTC---A---GTAGTT-T-A-GCAT----TATTTAA-TTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTA-TTTT--AAACACA--ACTCT-TGCCA----ACCCCAACCCC--TG-T-GTC-AAGACTA-C-CCCTATTGAT----GCCCCT--------TCCC-----AC-TTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT------GTCATT-GC-
gi|5 : tgaATCTAAAAGAAGCT--T---ATCGTTCT-------CAAAAATACTTCA--TTTCTTTTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAAA-CTCAGTGTTCATTT-AA-TTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAA-----A-A-AT-GTACAGT-AA-----AAGTGCACACATAAGCCTAACTAATGG----T-CAAACGAAGCAATTTTTGAAGTTATTCAA--CAATGACGAC--AAGCTGA--ATCCTGA-TTTCA-TGCAAAAAAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCTT--TG---CGT--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGTTTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTC
gi|6 : ACA-ATTATTGCT-CAAAAATGAAA-TTGAGGATGATATTTTTTTAAAA--CACT-AAAT-TC-----------T-AC--AGT--A-TTCGACAAACATC---CA-GGCCA-CAACCAATCTCTA----CAA----------TA------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACT----TGTAATA--act
gi|6 : AAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTCCTCCAACGAAACAGCTAGAA--AACT-A-T--GAAAAC----G-CTCGA------TAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TGCCAT----CCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|7 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--T---AT----A-AT-GTACATTAAAAA--TAATTGCAGAC--AAGCAT-ACTAATGG----TCCAAATTTATCAA--TTTGAA-TTATTT-T--CAGTGACGAAAGAATTTGAACA----GATTTTCA-TGAC--AAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATC-GAAG-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGCTTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCA
gi|8 : ATATT----------ATT----TATA-TA--TTTACAACCT-AT-TC-ATTTAAACT-------------A-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG-----------------ATACAAACA---AA-TT-TCCCAAC-AAACG---AGAA--AAT---AT--G---AT-----GCTC-------ATA-TT----TGCAT----ATTTTAA-T-----AT--TTA-G-C--TAATT------TGAACC-CA-CC--A-TTTT--AAA---A--ATT-T-TGCCA----ACCCCA---CCT-TG-T--TC-------ATC-CCCTCCC--------CCCCCTT------TCCC-----AC-TT--TAC-------------------CT-AA-T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G--------GTCATT-TC-AA--TT-A-A---CTAACA-----T--T---ATC-TTCT-------CAAAA-----GCA---TT-----TTTAT--G-AAGT-TAACATGTGA-TTTACTCA-ctattg
gi|9 : aACA-ACCATTGTT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AAATACCT----------T-AATGAGT--A-TTCGACAAACATCCTGCA-GACCT-CAA-C------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TT-TANNNNNNNNN--NN--N----N-N-------------------------N-NNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATA--TATACAAACTCATATC-AT-----GTCATGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT
Alignments
lowQualScore : 22222 4444444444444444 999999999999999999999999999999999999999 44444444444444444444444444444444444 22222222222222222 11 11 11 222222222 111 111 2222222 55555555555555555 1111 111 111111 33333 11111 33333333 11111 5555555555555555555 2222 111111111 111 22222222 11 333333333333 2222222 33333 1111111111 111 1 22222 2222 1 1 2222 3333333 111 11 11 222222222 1111 1111 11 11 1111 222 2222222 2222 111 111 11 1111 222222222222 111 111 11 111111
lowQualScore : 5 5 0 5 0 5 44444 66 5 0000000000000000 2 66 4 777 4 4 3 111111111111111111111111111111111111111 66 777 777 4 66 66 66666666666666666666666666666666666 4 5 9999 99999999999999999 66 7 6 3 6 1 8 8 11 0 8 11 33 5 000000000 6 6 000 99 6 6 111 6 99 9999999 4 33333333333333333 0 999 1 2222 5 1 000 5 5 5 5 5 1 77 5 77 444444 6 99999 5 5 4 5 5 1 5 1 66666 33333333 66666 6 6 1111111111111111111 6 6 3333 3 99 999999999 1 111 99 44 55555555 6 6 11 8 8 0 444444444444 6 1111111 33333 8888888888 99 1 6 8 3 777 0 55555 4444 0 0 1111 2222222 0 3 0 8 8 444 8 11 8 0 11 0 444444444 8 5 8 2222 999 88 7777 8 0 55 11 5555 222 2222222 8 8 8888 444 8 8 888 55 888 99 44 3 2 6 1 6 6 6 4444 7 555555555555 2 99 6 6 1 1 6 99 111 6 8 0 0 444 11 1 8 0 6 222222 8
lowQualScore : . . . . . . ..... .. . ................ . .. . ... . . . ....................................... .. ... ... . .. .. ................................... . . .... ................. .. . . . . . . . .. . . .. .. . ......... . . ... .. . . ... . .. ....... . ................. . ... . .... . . ... . . . . . . .. . .. ...... . ..... . . . . . . . . ..... ........ ..... . . ................... . . .... . .. ......... . ... .. .. ........ . . .. . . . ............ . ....... ..... .......... .. . . . . ... . ..... .... . . .... ....... . . . . . ... . .. . . .. . ......... . . . .... ... .. .... . . .. .. .... ... ....... . . .... ... . . ... .. ... .. .. . . . . . . . .... . ............ . .. . . . . . .. ... . . . . ... .. . . . . ...... .
lowQualScore : 0 0 8 0 6 0 55555 99 0 4444444444444444 0 11 4 888 4 4 9 333333333333333333333333333333333333333 11 888 888 4 11 11 00000000000000000000000000000000000 4 0 9999 55555555555555555 99 3 7 7 7 5 0 0 00 8 0 66 66 7 777777777 7 7 888 22 7 7 777 7 22 7777777 2 33333333333333333 7 444 7 1111 7 7 000 7 7 7 4 7 4 11 0 99 666666 7 55555 7 7 3 7 7 7 7 0 77777 33333333 77777 7 7 7777777777777777777 7 7 3333 5 22 333333333 7 777 22 88 00000000 7 7 00 0 0 8 777777777777 7 7777777 22222 5555555555 22 0 7 0 2 555 0 00000 0000 0 0 2222 5555555 8 2 8 0 0 000 0 00 0 8 00 8 666666666 0 6 0 8888 888 88 0000 0 8 66 00 2222 000 0000000 0 0 0000 888 0 0 333 88 222 22 22 2 5 7 0 7 7 7 2222 2 000000000000 5 22 7 7 0 0 7 22 777 7 0 8 8 000 00 4 0 8 4 888888 0
consensus : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAATTTTGGA--TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( family-2941 ) : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAATTTTGGA--TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAG-ATGATATTTTTTTAAAA--CACCTAAATTTT-----------C-TACAAGT--AATTCGACAAACATC---CA-GGCAT-CAACC------------AAA----------TCTCTACAAATA--TCGATATTA--AC-T---TT---TAC-GA-ATCAATTTATAAAGGAGCTG--AGA-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------ACT-----GTAATAAGTCT-CAGACT--GGTC-AATATTGCTCATCCC
gi|1 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaAAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTCCTCCAACGAAACAGCTAGAATAAACTTAATA-GAAAATTATCGGCTC--------T-GTTAT-ATGTATGATTATTTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATGCCATC----CCCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGATCGATGCCCCC--------TCCCCTTCCACATT-AAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA----T--TTTTATC-TTCT-------TAAAA----TGCAAGTCT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G---AATGTC-----TCA--C-AA-TTCA-AA----TAATTGT-------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAAATGTA-A-ATAATACA-T-AAAATTTAAGTGCAAAC--AAGCA--ACTAATGGTTTCT-TAAACTGATCAATTTTGGA--TTATTT-TTCCAGTGA-GA---AATTTGA--A----GA-TTTCATTG----AAAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATG--ACGTCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGCTTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCAaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|10 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatCAACCCCT-TA-TGGTC-AAGG-TACC-CCCTTTCAAT----GTCC----------TCCC-----AC-TA-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T------GTCACT-GC-AA--TT-A-AAATCTAGCAG----TGAT---GTC-TTATATATATATAAAAAAT-TGCA--TTC-----TTTAT--GAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--G-AGTTTCA-AA----TAATTGT-------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGTACATAT-ATACATT-AAAT--TAACAACAAAC--GAGCcttaat
gi|11 : GCAAAC--GAGCAT-ACCAATGG----T-TAAAATGGTCAATTT--GA--TTATTT-T--CAGTGACGA---AATTTGA--A----TA-TTTCA-TG----AAAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCAATT-AATG--ACGCCATAAATCGGAAG-TGT-GCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCAc
gi|12 : ACATATTATTGCT-CTAAAATGAAA-TTGAAGAGGATGTTTT----AAAAACACC-AAATACTCACGTGTACCTT-AATGAGT--A-TTTGACAAACATC---TA-GGCCT-CAACCAAACTTGAGCTACGA----------TC------------TAGATATCT--ACATAAATT---TGCAGA-ATCA--TTATGAAGGAGTTGTCAGTGG----G-T-------------------------G-TGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACA----TGTAATA--TTctaat
gi|13 : tattaatttttgaattataaaaaattattaataattaaaaA-ATTATGGCT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AACTACCT----------T-AATGAGT--A-ATTGACAAACATC---CA-GGCCT-AAACCAATCTCTA----CAA----------CC------------TCGATATTA--ATAT---TT---TACAGATATAA--TTGTAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-A
gi|14 : tcttttatttatttttgaattatgT--A-TTCGACAAACATC---CACGGCCCACAA-C------------CAA----------TCTCATACTAATAATCGATAGTT--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----GTT-------------------------G-TGTG
gi|16 : TAAAAA---TAG--AACATTCACATTTTGTTG--ACG----------GAAG-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGC
gi|18 : AAAC----AGCTGAG-A---G-ATTT-TGATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|19 : ACA-ATTATCGCT-CAATAATGAAA-
gi|2 : gatcttttatttatttttgaattatgaaatattttaataACA-ATTATTGCT-CAATAATGAAA-TCGAGGAAGACATAT-----AAA--CGCC-AAAT----------------------------TCGACAAACATC---CA-GGCCT-CAAAC-------------GA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTA-ATTAAAACCCACACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCTTATCGAAACAGCTAGAA--AAC--AAT--GAAAAT-----GCTAGATACATGTAGTT-T-ATGCAC----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TACA-CCCTTTCGAT-----CCCCC--------TCCC-----AC-TG-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCAAT-GC-AA--TT-A-AAATCTAACA-----T--T---ATC-TTCT-------CAAAA----TGCA--GCT-----TTTAT--GAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--CAAA-TTCA-AA----TAATAGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTGTATACAT-GTACATT-AAAA--TAAGTGCAAAT--AAGCAT-ACTAATGG----T-CAAACTGATCAATTT--GA--TTATTT-T--CAGTGACGA---AATTTGA--G----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATG--ACATCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|3 : ACA-ATTTATGCT-CAATAATGAAAATTGAGGAAGATATTT-----AAA--CGCC-AAATACC-----------TTAATGAGTTTG-TTTGACAAACATC---CA-GGCCT-CAACC------------CAAACCTCTACAATC------------TCGATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTG--AA--AAAAAG-T-------------------------GGTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-----GTAATA--TT-ACAAAC-CATATC-ATTAAAACTCGTACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-TCC-GA--TTACAA--AAACAC-AT-------------TTCCCCCAACGAAACAGTTAGAA--AACT---T--GGAAAT----GCCTCGA------TAGTT-T-AAGCAT----ATTTTAA-TAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TGCC--CA-ACCCCAACTCCT-TG-TGGTCAAAGG-TTTT-CCTTTTCGAT----GCCCCCCTCCCCTTTCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T------GTCATT-GCAAA--TTAA-AAATCTAACA-----T--T---AT--TTCT-------CAAAA-----GCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-A
gi|4 : tgatccttttatttatttttgaattatgaaatatttaattTTT----AAA--CGCC-AAATACC-----------TTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC-------------AA----------TC------------TCTACATTA--ACAT---TT---TACAGA-ATCC--TTATAAAGGAGCTG--AA--A----G-TANNNNNNNNNNNNNNNNNNNNNNNNN-TGTGTCCCAAACATATAGA-G--ATGTTATATTTC--------ATG----CATTATA--TT-ACAAA-TCATGTCCACTAAAACTCATACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTACGAAACAGCTAACA--AACT-AACTGGGAAATA---AGCTC---A---GTAGTT-T-A-GCAT----TATTTAA-TTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTA-TTTT--AAACACA--ACTCT-TGCCA----ACCCCAACCCC--TG-T-GTC-AAGACTA-C-CCCTATTGAT----GCCCCT--------TCCC-----AC-TTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT------GTCATT-GC-
gi|5 : tgaATCTAAAAGAAGCT--T---ATCGTTCT-------CAAAAATACTTCA--TTTCTTTTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAAA-CTCAGTGTTCATTT-AA-TTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAA-----A-A-AT-GTACAGT-AA-----AAGTGCACACATAAGCCTAACTAATGG----T-CAAACGAAGCAATTTTTGAAGTTATTCAA--CAATGACGAC--AAGCTGA--ATCCTGA-TTTCA-TGCAAAAAAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCTT--TG---CGT--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGTTTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTC
gi|6 : ACA-ATTATTGCT-CAAAAATGAAA-TTGAGGATGATATTTTTTTAAAA--CACT-AAAT-TC-----------T-AC--AGT--A-TTCGACAAACATC---CA-GGCCA-CAACCAATCTCTA----CAA----------TA------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACT----TGTAATA--act
gi|6 : AAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTCCTCCAACGAAACAGCTAGAA--AACT-A-T--GAAAAC----G-CTCGA------TAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TGCCAT----CCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|7 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--T---AT----A-AT-GTACATTAAAAA--TAATTGCAGAC--AAGCAT-ACTAATGG----TCCAAATTTATCAA-TTTGAA--TTATTT-T--CAGTGACGAAAGAATTTGAACA----GATTTTCA-TGAC--AAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATC-GAAG-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGCTTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCA
gi|8 : ATATT----------ATT----TATA-TA--TTTACAACCT-AT-TC-ATTTAAACT-------------A-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG-----------------ATACAAACA---AA-TT-TCCCAAC-AAACG---AGAA--AAT---AT--G---AT-----GCTC-------ATA-TT----TGCAT----ATTTTAA-T-----AT--TTA-G-C--TAATT------TGAACC-CA-CC--A-TTTT--AAA---A--ATT-T-TGCCA----ACCCCA---CCT-TG-T--TC-------ATC-CCCTCCC--------CCCCCTT------TCCC-----AC-TT--TAC-------------------CT-AA-T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G--------GTCATT-TC-AA--TT-A-A---CTAACA-----T--T---ATC-TTCT-------CAAAA-----GCA---TT-----TTTAT--G-AAGT-TAACATGTGA-TTTACTCA-ctattg
gi|9 : aACA-ACCATTGTT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AAATACCT----------T-AATGAGT--A-TTCGACAAACATCCTGCA-GACCT-CAA-C------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TT-TANNNNNNNNN--NN--N----N-N-------------------------N-NNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATA--TATACAAACTCATATC-AT-----GTCATGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT
Alignments
lowQualScore : 22222 4444444444444444 999999999999999999999999999999999999999 44444444444444444444444444444444444 22222222222222222 11 11 11 222222222 111 111 2222222 55555555555555555 1111 111 111111 33333 11111 33333333 11111 5555555555555555555 2222 111111111 111 22222222 11 333333333333 2222222 33333 1111111111 111 1 22222 2222 1 1 2222 3333333 111 11 11 222222222 1111 1111 11 11 1111 222 2222222 2222 111 111 11 1111 222222222222 111 111 11 111111
lowQualScore : 5 5 0 5 0 5 44444 66 5 0000000000000000 2 66 4 777 4 4 3 111111111111111111111111111111111111111 66 777 777 4 66 66 66666666666666666666666666666666666 4 5 9999 99999999999999999 66 7 6 3 6 1 8 8 11 0 8 11 33 5 000000000 6 6 000 99 6 6 111 6 99 9999999 4 33333333333333333 0 999 1 2222 5 1 000 5 5 5 5 5 1 77 5 77 444444 6 99999 5 5 4 5 5 1 5 1 66666 33333333 66666 6 6 1111111111111111111 6 6 3333 3 99 999999999 1 111 99 44 55555555 6 6 11 8 8 0 444444444444 6 1111111 33333 8888888888 99 1 6 8 3 777 0 55555 4444 0 0 1111 2222222 0 3 0 8 8 444 8 11 8 0 11 0 444444444 8 5 8 2222 999 88 7777 8 0 55 11 5555 222 2222222 8 8 8888 444 8 8 888 55 888 99 44 3 2 6 1 6 6 6 4444 7 555555555555 2 99 6 6 1 1 6 99 111 6 8 0 0 444 11 1 8 0 6 222222 8
lowQualScore : . . . . . . ..... .. . ................ . .. . ... . . . ....................................... .. ... ... . .. .. ................................... . . .... ................. .. . . . . . . . .. . . .. .. . ......... . . ... .. . . ... . .. ....... . ................. . ... . .... . . ... . . . . . . .. . .. ...... . ..... . . . . . . . . ..... ........ ..... . . ................... . . .... . .. ......... . ... .. .. ........ . . .. . . . ............ . ....... ..... .......... .. . . . . ... . ..... .... . . .... ....... . . . . . ... . .. . . .. . ......... . . . .... ... .. .... . . .. .. .... ... ....... . . .... ... . . ... .. ... .. .. . . . . . . . .... . ............ . .. . . . . . .. ... . . . . ... .. . . . . ...... .
lowQualScore : 0 0 8 0 6 0 55555 99 0 4444444444444444 0 11 4 888 4 4 9 333333333333333333333333333333333333333 11 888 888 4 11 11 00000000000000000000000000000000000 4 0 9999 55555555555555555 99 3 7 7 7 5 0 0 00 8 0 66 66 7 777777777 7 7 888 22 7 7 777 7 22 7777777 2 33333333333333333 7 444 7 1111 7 7 000 7 7 7 4 7 4 11 0 99 666666 7 55555 7 7 3 7 7 7 7 0 77777 33333333 77777 7 7 7777777777777777777 7 7 3333 5 22 333333333 7 777 22 88 00000000 7 7 00 0 0 8 777777777777 7 7777777 22222 5555555555 22 0 7 0 2 555 0 00000 0000 0 0 2222 5555555 8 2 8 0 0 000 0 00 0 8 00 8 666666666 0 6 0 8888 888 88 0000 0 8 66 00 2222 000 0000000 0 0 0000 888 0 0 333 88 222 22 22 2 5 7 0 7 7 7 2222 2 000000000000 5 22 7 7 0 0 7 22 777 7 0 8 8 000 00 4 0 8 4 888888 0
consensus : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAATTTTGGA--TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( family-2941 ) : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAATTTTGGA--TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAG-ATGATATTTTTTTAAAA--CACCTAAATTTT-----------C-TACAAGT--AATTCGACAAACATC---CA-GGCAT-CAACC------------AAA----------TCTCTACAAATA--TCGATATTA--AC-T---TT---TAC-GA-ATCAATTTATAAAGGAGCTG--AGA-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------ACT-----GTAATAAGTCT-CAGACT--GGTC-AATATTGCTCATCCC
gi|1 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaAAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTCCTCCAACGAAACAGCTAGAATAAACTTAATA-GAAAATTATCGGCTC--------T-GTTAT-ATGTATGATTATTTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATGCCATC----CCCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGATCGATGCCCCC--------TCCCCTTCCACATT-AAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA----T--TTTTATC-TTCT-------TAAAA----TGCAAGTCT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G---AATGTC-----TCA--C-AA-TTCA-AA----TAATTGT-------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAAATGTA-A-ATAATACA-T-AAAATTTAAGTGCAAAC--AAGCA--ACTAATGGTTTCT-TAAACTGATCAATTTTGGA--TTATTT-TTCCAGTGA-GA---AATTTGA--A----GA-TTTCATTG----AAAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATG--ACGTCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGCTTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCAaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|10 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatCAACCCCT-TA-TGGTC-AAGG-TACC-CCCTTTCAAT----GTCC----------TCCC-----AC-TA-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T------GTCACT-GC-AA--TT-A-AAATCTAGCAG----TGAT---GTC-TTATATATATATAAAAAAT-TGCA--TTC-----TTTAT--GAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--G-AGTTTCA-AA----TAATTGT-------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGTACATAT-ATACATT-AAAT--TAACAACAAAC--GAGCcttaat
gi|11 : GCAAAC--GAGCAT-ACCAATGG----T-TAAAATGGTCAATTT--GA--TTATTT-T--CAGTGACGA---AATTTGA--A----TA-TTTCA-TG----AAAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCAATT-AATG--ACGCCATAAATCGGAAG-TGT-GCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCAc
gi|12 : ACATATTATTGCT-CTAAAATGAAA-TTGAAGAGGATGTTTT----AAAAACACC-AAATACTCACGTGTACCTT-AATGAGT--A-TTTGACAAACATC---TA-GGCCT-CAACCAAACTTGAGCTACGA----------TC------------TAGATATCT--ACATAAATT---TGCAGA-ATCA--TTATGAAGGAGTTGTCAGTGG----G-T-------------------------G-TGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACA----TGTAATA--TTctaat
gi|13 : tattaatttttgaattataaaaaattattaataattaaaaA-ATTATGGCT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AACTACCT----------T-AATGAGT--A-ATTGACAAACATC---CA-GGCCT-AAACCAATCTCTA----CAA----------CC------------TCGATATTA--ATAT---TT---TACAGATATAA--TTGTAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-A
gi|14 : tcttttatttatttttgaattatgT--A-TTCGACAAACATC---CACGGCCCACAA-C------------CAA----------TCTCATACTAATAATCGATAGTT--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----GTT-------------------------G-TGTG
gi|16 : TAAAAA---TAG--AACATTCACATTTTGTTG--ACG----------GAAG-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGC
gi|18 : AAAC----AGCTGAG-A---G-ATTT-TGATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|19 : ACA-ATTATCGCT-CAATAATGAAA-
gi|2 : gatcttttatttatttttgaattatgaaatattttaataACA-ATTATTGCT-CAATAATGAAA-TCGAGGAAGACATAT-----AAA--CGCC-AAAT----------------------------TCGACAAACATC---CA-GGCCT-CAAAC-------------GA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTA-ATTAAAACCCACACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCTTATCGAAACAGCTAGAA--AAC--AAT--GAAAAT-----GCTAGATACATGTAGTT-T-ATGCAC----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TACA-CCCTTTCGAT-----CCCCC--------TCCC-----AC-TG-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCAAT-GC-AA--TT-A-AAATCTAACA-----T--T---ATC-TTCT-------CAAAA----TGCA--GCT-----TTTAT--GAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--CAAA-TTCA-AA----TAATAGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTGTATACAT-GTACATT-AAAA--TAAGTGCAAAT--AAGCAT-ACTAATGG----T-CAAACTGATCAATTT--GA--TTATTT-T--CAGTGACGA---AATTTGA--G----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATG--ACATCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|3 : ACA-ATTTATGCT-CAATAATGAAAATTGAGGAAGATATTT-----AAA--CGCC-AAATACC-----------TTAATGAGTTTG-TTTGACAAACATC---CA-GGCCT-CAACC------------CAAACCTCTACAATC------------TCGATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTG--AA--AAAAAG-T-------------------------GGTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-----GTAATA--TT-ACAAAC-CATATC-ATTAAAACTCGTACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-TCC-GA--TTACAA--AAACAC-AT-------------TTCCCCCAACGAAACAGTTAGAA--AACT---T--GGAAAT----GCCTCGA------TAGTT-T-AAGCAT----ATTTTAA-TAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TGCC--CA-ACCCCAACTCCT-TG-TGGTCAAAGG-TTTT-CCTTTTCGAT----GCCCCCCTCCCCTTTCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T------GTCATT-GCAAA--TTAA-AAATCTAACA-----T--T---AT--TTCT-------CAAAA-----GCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-A
gi|4 : tgatccttttatttatttttgaattatgaaatatttaattTTT----AAA--CGCC-AAATACC-----------TTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC-------------AA----------TC------------TCTACATTA--ACAT---TT---TACAGA-ATCC--TTATAAAGGAGCTG--AA--A----G-TANNNNNNNNNNNNNNNNNNNNNNNNN-TGTGTCCCAAACATATAGA-G--ATGTTATATTTC--------ATG----CATTATA--TT-ACAAA-TCATGTCCACTAAAACTCATACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTACGAAACAGCTAACA--AACT-AACTGGGAAATA---AGCTC---A---GTAGTT-T-A-GCAT----TATTTAA-TTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTA-TTTT--AAACACA--ACTCT-TGCCA----ACCCCAACCCC--TG-T-GTC-AAGACTA-C-CCCTATTGAT----GCCCCT--------TCCC-----AC-TTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT------GTCATT-GC-
gi|5 : tgaATCTAAAAGAAGCT--T---ATCGTTCT-------CAAAAATACTTCA--TTTCTTTTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAAA-CTCAGTGTTCATTT-AA-TTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAA-----A-A-AT-GTACAGT-AA-----AAGTGCACACATAAGCCTAACTAATGG----T-CAAACGAAGCAATTTTTGAAGTTATTCAA--CAATGACGAC--AAGCTGA--ATCCTGA-TTTCA-TGCAAAAAAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCTT--TG---CGT--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGTTTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTC
gi|6 : ACA-ATTATTGCT-CAAAAATGAAA-TTGAGGATGATATTTTTTTAAAA--CACT-AAAT-TC-----------T-AC--AGT--A-TTCGACAAACATC---CA-GGCCA-CAACCAATCTCTA----CAA----------TA------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACT----TGTAATA--act
gi|6 : AAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTCCTCCAACGAAACAGCTAGAA--AACT-A-T--GAAAAC----G-CTCGA------TAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TGCCAT----CCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|7 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--T---AT----A-AT-GTACATTAAAAA--TAATTGCAGAC--AAGCAT-ACTAATGG----TCCAAATTTATCAA-TTTGAA--TTATTT-T--CAGTGACGAAAGAATTTGAACA----GATTTTCA-TGAC--AAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATC-GAAG-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGCTTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCA
gi|8 : ATATT----------ATT----TATA-TA--TTTACAACCT-AT-TC-ATTTAAACT-------------A-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG-----------------ATACAAACA---AA-TT-TCCCAAC-AAACG---AGAA--AAT---AT--G---AT-----GCTC-------ATA-TT----TGCAT----ATTTTAA-T-----AT--TTA-G-C--TAATT------TGAACC-CA-CC--A-TTTT--AAA---A--ATT-T-TGCCA----ACCCCA---CCT-TG-T--TC-------ATC-CCCTCCC--------CCCCCTT------TCCC-----AC-TT--TAC-------------------CT-AA-T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G--------GTCATT-TC-AA--TT-A-A---CTAACA-----T--T---ATC-TTCT-------CAAAA-----GCA---TT-----TTTAT--G-AAGT-TAACATGTGA-TTTACTCA-ctattg
gi|9 : aACA-ACCATTGTT-CAATAATGAAA-TTGAGGAAGATA-TTT----AAA--CGCC-AAATACCT----------T-AATGAGT--A-TTCGACAAACATCCTGCA-GACCT-CAA-C------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TT-TANNNNNNNNN--NN--N----N-N-------------------------N-NNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATA--TATACAAACTCATATC-AT-----GTCATGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCA
blockSeqs : T . A T TTTTA AA . ACTCACGTGTACCTT T TT . CTG C A C AAACTTGAGCTACGATC TA AAA AGT T . TC AGTANNNNNNNNNNNNNNNNNNNNNNNN G C TAC GACAGTGTGACTGGGGC . T C G C A C T TT A AT TG . TCCTCAG . . ATC CA C C . G . TAACTG A GCTAGATACATG TG T . . T CCC . A C A . A A T . CACA . CCCAA . . G A C C . A G CTCCCCTT . . G . T . CC A TG CTCA A . GC AT AT . A . A . GAAGCTT G ATATATA ATACT TTTCTTTT TT C C . A GCA . AGTGT TTT T C TTAC TAAACAC A A C . C TA . AC AATGTACAT . T A AT ATA TA . C TT AG AA AAG ATCCT T . CAAA GC C A CAC A TGT AA CC A G . C . C C ACTT A ATTCCACCC C TC . C C C A CA TCC C A TTG GG A A C CACAG .
blockSeqs : . . . T T . . ACCTT T . . . . . C CAATCTCATACTAATAA . . . . . . AAAAAGT . . TGT CATGC . T C A . A . . . . AA G . TGCT . . T . . C . . . AAT G AGCTGAGAG T T . . T . . . . T . A A T . AAC . CAA . . G . . C . G G TT . . . . . . . A . A A . . AT T . . . . . GTGAT . . AATT TTC . T . . A . . . CA . . . . A . . . . . . . AGTGTATAC . T . AA G T . . TG . T C ACA . . AC C . . . . AGA . TC A G . C . . . . A CT A . . . C C . . . C . . . G . T CCGT .
blockSeqs : . . . T T . . ACCTT T . . . . . A CAAACCTCTACAATC . . . . . . TGGGT . . TGT ACAT . T C G . A . . . . T . . TG . . T . . A . . . TAT G AAGCTCAG T A . . A . . . . T . C C T . A . A . . G . . T . G G . . . . . . . . T . A A . . AG T . . . . . TT . . T GCT . C . . A . . . G . . . . . . . . . . . . ATA . G . AA G T . . . . T . A . . . A . . . . TGT . TC A G . C . . . . C CT C . . . C T . . . C . . . A . T CAG .
blockSeqs : . . . T T . . ACCTT T . . . . . C AATCTCTACAACC . . . . . . AGTT . . NNN ACTC . . C A . G . . . . . . . TG . . T . . . . . . TT A GCCTCGA T T . . T . . . . A . A A T . A . T . . G . . C . G . . . . . . . . . A . A A . . GT T . . . . . TT . . . TTT . C . . . . . . . . . AA . T . . A T . . . . T . G . . . A . . . . AA . T . . . C . . . . A CT A . . . C C . . . C . . . G . C CAA .
blockSeqs : . . . . T . . ACCTT T . . . . . C AATCTCTACAATA . . . . . . AGT . . AT ACTT . . . . . . . . G . . . . . . . . . AT . GCTCGA T T . . T . . . . T . A A . . A . A . . . . . T . . . . . . . . . . . . . A . . . A . . . TT . . . TT . . . A . . T . . . . . . . . . . . C . . . . . . . . . .
blockSeqs : . . . . . . . TCT . . . . . . C CAATC . . . . . . AGT . . G ATTT . . . . GCTCA . . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . GATC . . . . . . AGT . . AAT .
blockSeqs : . . . . . . AATC . . . . . . NNN .
blockSeqCons : T**** ACCTT*********** AATCTCTACAATC************************** ** AGT******************************** TGT* ACTT************* ** *** ** TAT**** T** **** A* ** A***** A**** G**** ***** ******************* **** A******** *** AT T******* ** TT********** AT*** TTT******* *** AGTA***** AA** T* **** T* T*** A** *** ** CT********** CAG***
originalCons : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACC-----------T-AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC------------CAA----------TC------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AG--A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACT----CGTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT-AAT--GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TGCCATC--ACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAACAG----T--T---ATC-TTCT-------CAAAA----TGCA--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAATGTA-A-AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAATTTTGGA--TTATTT-T--CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
finalCons : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATACCTT-----------AATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACCAATCTCTACAATC--------------------------TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--AGAGT--------------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTTACTT-------------GTAATA--TTTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACTAT----GAAAAT----GGCTCGA-A---GTAGTTT--ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAAA-----ATTCT-TGCCAA----CCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGATG----CCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAAA--------CAG---TG--CCAATGT-------GTCATT-GC-AA--TT-A-AAATCTAACATT----------ATC-TTCT-------CAAAAAT---GCATTT-------TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAAGTA-----AT-GTACATT-AAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----T-CAAACTGATCAATTTT-GA--TTATTTT---CAGTGACGA---AATTTGA--A----GA-TTTCA-TG----AAAAATAGA--AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAACT----------TTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGGCAG---TACATAAGGC-ACTCCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT
Alignments
lowQualScore : 33333 22222222222 11 4444444444444444444444444 222222222222222222 11 11 11 222222222 111 111 2222222 55555555555555555 1111 111 111111 2222 11111 33333333 11111 5555555555555555555 2222 111111111 111 22222222 11 44444444 111 111111 2222222222222222222 111 1 22222 2222 1 1 2222 3333333 111 11 11 5555555555555 2222 1111 11 11 1111 111 2222 1111111 111 111 11 1111 222222222222 111 111 11 111111
lowQualScore : 5 5 0 5 0 66666 66 5 3 33333333333 6 66 4 777 4 4 00 0 9999 4 8 55 66 777 777 4 66 66 66 4 9999 4 4444444444444444444444444 4 5 9999 000000000000000000 0 66 5 6 3 6 1 8 8 11 0 8 11 33 5 000000000 6 6 000 99 6 6 111 6 99 1111111 4 33333333333333333 0 999 1 2222 5 1 000 5 5 5 5 5 1 77 5 77 444444 6 0000 5 5 4 5 5 1 5 1 66666 33333333 66666 6 6 1111111111111111111 6 6 3333 3 99 999999999 1 111 99 44 55555555 6 6 11 8 8 0 6 00000000 111 111111 5555555555555555555 99 1 6 8 3 777 0 55555 4444 0 0 1111 2222222 0 3 0 8 8 444 8 11 8 0 11 0 7777777777777 8 5 0000 999 88 7777 8 88 33 11 5555 8 444 8888 8 8 9999999 444 8 8 888 55 888 99 44 3 2 6 1 6 6 6 4444 7 555555555555 2 99 6 6 1 1 6 99 111 6 8 0 0 444 11 1 8 0 6 222222 8
lowQualScore : . . . . . ..... .. . . ........... . .. . ... . . .. . .... . . .. .. ... ... . .. .. .. . .... . ......................... . . .... .................. . .. . . . . . . . .. . . .. .. . ......... . . ... .. . . ... . .. ....... . ................. . ... . .... . . ... . . . . . . .. . .. ...... . .... . . . . . . . . ..... ........ ..... . . ................... . . .... . .. ......... . ... .. .. ........ . . .. . . . . ........ ... ...... ................... .. . . . . ... . ..... .... . . .... ....... . . . . . ... . .. . . .. . ............. . . .... ... .. .... . .. .. .. .... . ... .... . . ....... ... . . ... .. ... .. .. . . . . . . . .... . ............ . .. . . . . . .. ... . . . . ... .. . . . . ...... .
lowQualScore : 0 0 8 0 6 88888 99 0 6 22222222222 2 11 4 888 4 4 66 9 4444 4 9 66 11 888 888 4 11 11 11 4 4444 4 4444444444444444444444444 4 0 9999 555555555555555555 4 99 7 7 7 7 5 0 0 00 8 0 66 66 7 777777777 7 7 888 22 7 7 777 7 22 8888888 2 33333333333333333 7 444 7 1111 7 7 000 7 7 7 4 7 4 11 0 99 666666 7 8888 7 7 3 7 7 7 7 0 77777 33333333 77777 7 7 7777777777777777777 7 7 3333 5 22 333333333 7 777 22 88 00000000 7 7 00 0 0 8 7 88888888 777 888888 0000000000000000000 22 0 7 0 2 555 0 00000 0000 0 0 2222 5555555 8 2 8 0 0 000 0 00 0 8 00 8 0000000000000 0 6 8888 888 88 0000 0 88 66 00 2222 0 000 0000 0 0 0000000 888 0 0 333 88 222 22 22 2 5 7 0 7 7 7 2222 2 000000000000 5 22 7 7 0 0 7 22 777 7 0 8 8 000 00 4 0 8 4 888888 0
consensus : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATAC----------CTTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC--AATCT----C-TAC-AATC-TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--A--G-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACTTG----TAATA--T-TTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT--A--T-GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TG----CCAACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAAC-A--------TT---ATC-T---TCTCAAAAA-TGC---A--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAA--GT---A-AT--AT-GTACATTAAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----TC-AAACTGATCAA-TTTT-GA--TTATTT-T--CAGTGACGA-AA---TTTGAA----GATTT-CA-TG----A--AAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
Reference ( family-2941 ) : ACA-ATTATTGCT-CAATAATGAAA-TTGAGGAAGATATTTT----AAA--CGCC-AAATAC----------CTTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC--AATCT----C-TAC-AATC-TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--A--G-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACTTG----TAATA--T-TTACAAACTCATGTC-ATTAAAACTCATACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCCCAACGAAACAGCTAGAA--AACT--A--T-GAAAAT----GGCTCGA-A---GTAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTATTTTT--AAA---A--ATTCT-TG----CCAACCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTTCGAT----GCCCCC--------TCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCATT-GC-AA--TT-A-AAATCTAAC-A--------TT---ATC-T---TCTCAAAAA-TGC---A--TTT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--C-AA-TTCA-AA----TAATTGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAA--GT---A-----AT-GTACATTAAAA--TAAGTGCAAAC--GAGCAT-ACTAATGG----TC-AAACTGATCAA-TTTT-GA--TTATTT-T--CAGTGACGA-AA---TTTGAA----GATTT-CA-TG----A--AAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGATG--ACGTCATAAATCGGAAG-TGCCGCG-CAA-CTCA-GAG----GTATATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTTTATTCAT-AAAATTCCCACGG--CAG-TACATAAGGC-ACTCCA
gi|1 : ACA-AT-ATTGCTTCAAAAATGAAA-TTGAG-ATGATATTTTTTTAAAA--CACCTAAATTT----------TCTA-CAAGT--AATTCGACAAACATC---CA-GGCAT-CAACCA-AATCT----C-TACAAATA-TCGATATTA--AC-T---TT---TAC-GA-ATCAATTTATAAAGGAGCTG--A--GAA----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGTCATGTTATATGT---------AC-TG----TAATAAGT-CT-CAGACT--GGTC-AATATTGCTCATCCC
gi|1 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaAAGTCTC--AGACT-----G--GTCAATATTGCTCATCCCAA--TTACAA--AAATAC-TTACCAGTACCAAA-TTCCTCCAACGAAACAGCTAGAATAAACTTAA--TAGAAAATTATCGGCTC--------T-GTTAT-ATGTATGATTATTTTAAATTG---ATGCTTATG-CG-TAATTTAGAAGTAA-CCACAACCCTGTTTTTTAAAA---AC-ATTCTATG----CCATCCCCAACCCCTGTGATGGTC-AAGG-TACTGCCCTTTCGATCGATGCCCCC--------TCCCCTTCCACATT-AAACTCTAAATTTGTGAGTGCCACTAAA-TATGTTCCCCTACGCAT--GGAA---ATACATCGGGCTTG--CCA-TG-TTGATCAATCATTTGC-GACATT-ATAAATCTAACCA--------TTTTTATC-T---TCTTAAAA--TGC---AAGTCT-----TTTAT--GAAAGTGTAACATCTGA-AGTACTCAACATTTTAATGTG---G---AATGTC-----TCA--C-AA-TTCA-AA----TAATTGT-------AGTATATGG-ATTTGCTTAT-TGGATTTGTCA-ATCAT--TATTGATAAAATAATGA--TAAA--ATGTAA-----ATAATACA-TAAAATTTAAGTGCAAAC--AAGCA--ACTAATGGTTTCTT-AAACTGATCAA-TTTTGGA--TTATTT-TTCCAGTGA-GA-AA---TTTGAA----GATTT-CATTG----A--AAAATAGAA-AATT-GT-GTCTAAAAAT--TAGGTAACATTCATATTTTGATG--ACGTCATAAATCGGAAGTTGCTGCGCCAA-CTCA-GAG----GTCTATCAAA-------CTTTTTTTTTCGA--ATTA-AAGTAACC-C--AA---GG-CTATAAA-ATAGGC-T---AGT--GCATTGCTTTATTCAT-AAAA-----A----------ACATAAGGCAACTCCAaattacaaaaatacttaccagtaccaaattcctccaacgaaacagctagaataaacttaatagaaaattatcggctctgttatatgtatgattattttaaattgatgcttatgcgtaatttagaagtaaccacaaccctgttttttaaaaacattctatgccatccccaacccctgtgatggtcaaggtactgccctttcgatcgatgccccctccccttccacattaaactctaaatttgtgagtgccactaaatatgttcccctacgcatggaaatacatcgggcttgccatgttgatcaatcatttgcgacattataaatctaaccatttttatcttcttaaaatgcaagtcttttatgaaagtgtaacatctgaagtactcaacattttaatgtggaatgtctcacaattcaaataattgtagtatatggatttgcttattggatttgtcaatcattattgataaaataatgataaaatgtaaataatacataaaatttaagtgcaaacaagcaactaatggtttcttaaactgatcaattttggattatttttccagtgagaaatttgaagatttcattgaaaaatagaaaattgtgtctaaaaattaggtaacattcatattttgatgacgtcataaatcggaagttgctgcgccaactcagaggtctatcaaactttttttttcgaattaaagtaacccaaggctataaaataggctagtgcattgctttattcataaaaaacataaggcaactccacttaat
gi|10 : atcgatcttttttatacacttttttgaattataattaaaatgtatagtatttcttaaaacaatattgcttcaaaaatgaaattgagatgatatttttttaaaacacctaaattttctacaagtaattcgacaaacatccaggcatcaaccaaatctctacaaatatcgatattaacttttacgaatcaatttataaaggagctgagaagtgtgtgtcccaaaatatagatgtcatgttatatgtactgtaatCAACCCCT-TA-TGGTC-AAGG-TACC-CCCTTTCAAT----GTCC----------TCCC-----AC-TA-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--TAAATG-T------GTCACT-GC-AA--TT-A-AAATCTAGC-AGTGATGTCTT---ATA-TATATATAAAAAATTGC---A--TTC-----TTTAT--GAAAGTGTAACATTTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--G-AGTTTCA-AA----TAATTGT-------ACT-T-TGG-ATTTGCTTAT-TGA---TGTCA-CTCAT--TA-TGATAAGATAATGA--TAAAATGT---ACAT--AT-ATACATTAAAT--TAACAACAAAC--GAGCcttaat
gi|11 : GCAAAC--GAGCAT-ACCAATGG----TT-AAAATGGTCAA-TTT--GA--TTATTT-T--CAGTGACGA-AA---TTTGAA----TATTT-CA-TG----A--AAAATAG-C-AATT-GT-GTCTAAACA---TAA--AACATTCGCAATT-AATG--ACGCCATAAATCGGAAG-TGT-GCG-CAA-CTCC-GAAACTTGTATATCAAA-------C---TTTTTCCGA--A-AA-AAA-AACC-CCAAA---GGCCTATAAT-ATAGGCAT---AGT--GACTTGCTTTATTCAT-AAAATTACCGCGG--CAG-TACATAAAGC-ACTCCAc
gi|12 : ACATATTATTGCT-CTAAAATGAAA-TTGAAGAGGATGTTTT----AAAAACACC-AAATACTCACGTGTACCTTAATGAGT--A-TTTGACAAACATC---TA-GGCCT-CAACC--AAACTTGAGC-TAC-GATC-TAGATATCT--ACATAAATT---TGCAGA-ATCA--TTATGAAGGAGTTGTCAGTG-G----G-T-------------------------G-TGTGTCCCAAA-ACACAGATAC-ATGTTATATTT---------ACATG----TAATA--T-Tctaat
gi|13 : tattaatttttgaattataaaaaattattaataattaaaaA-ATTATGGCT-CAATAATGAAA-TTGAGGAAGATATTT-----AAA--CGCC-AACTAC----------CTTAATGAGT--A-ATTGACAAACATC---CA-GGCCT-AAACC--AATCT----C-TAC-AACC-TCGATATTA--ATAT---TT---TACAGATATAA--TTGTAAAGGAGCTG--A--G-A----G-T-------------------------G-TGTGTCCCAAA-A
gi|14 : tcttttatttatttttgaattatgT--A-TTCGACAAACATC---CACGGCCCACAACC--AATCT----CATACTAATAATCGATAGTT--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--A--G-A----GTT-------------------------G-TGTG
gi|16 : TAAAAA---TAG--AACATTCACATTTTGTTG--ACG----------GAAG-TGCCACA-CAA-CTTA-GAG----GTATATCAAA-------C---TTTTTCAGA--A-AA-AAGCAA-C-C--AA---GGC
gi|18 : AAAC----AGCTGAG-A---G-ATTT-TGATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTAAGA-GTAAACCACA-CCCTATTTTT--AAA---A--
gi|19 : ACA-ATTATCGCT-CAATAATGAAA-
gi|2 : gatcttttatttatttttgaattatgaaatattttaataACA-ATTATTGCT-CAATAATGAAA-TCGAGGAAGACATAT-----AAA--CGCC-AAAT---------------------------TCGACAAACATC---CA-GGCCT-CAA----------------AC-GATC-TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--A--G-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATTT---------ACTCG----TAATA--T-TTACAAACTCATGTA-ATTAAAACCCACACCTG-TATAA-G--AAACGTCAAT-CAATGTGTCAAGTCTC--AG-CT-----G--GTCAACAT-GCTC-TCCCGA--TTACAA--AAACAC-ATACCAATA---AA-TTCCCTTATCGAAACAGCTAGAA--AACA--A--T-GAAAAT-----GCTAGATACATGTAGTT-T-ATGCAC----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-TCCTATTTTT--AAA---A--ATTCT-TGCCACCCAACCCCAACCCCT-TG-TGGTC-AAGG-TACA-CCCTTTCGAT-----CCCCC--------TCCC-----AC-TG-AAAC-------------------CTAAA-T-TG----CCTACACAT--GAAA---A-----CAG---TG--CCAATG-T------GTCAAT-GC-AA--TT-A-AAATCTAAC-A--------TT---ATC-T---TCTC-AAAA-TGC---A--GCT-----TTTAT--GAACGTGTAATTTCTGA-AGTACTCA-CATTTTAATGTGAATG---AA-GTC-----TCA--CAAA-TTCA-AA----TAATAGT-------ATTATATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGATAAAATAATGA--TAAA--GT---GTATACAT-GTACATTAAAA--TAAGTGCAAAT--AAGCAT-ACTAATGG----TC-AAACTGATCAA--TTT-GA--TTATTT-T--CAGTGACGA-AA---TTTGAG----GATTT-CA-TG----A--AAAATAG-A-AATT-GT-GTCTAAAAA---TAG--AACATTCACATTTAGATG--ACATCATAAATCGAACG-TGCCGCG-CAA-CTCA-GAG----GTCTATCAAA-------C---TTTTTCCGA--A-AA-AAGCAACC-C--AA---GGCCTATAAG-ATAGGCAT---AGT--GGCTTGCTATATTCAT-AAAATTCCCATGG--CAA-TACATAAGGC-ACTCCA
gi|3 : ACA-ATTTATGCT-CAATAATGAAAATTGAGGAAGATATTT-----AAA--CGCC-AAATAC----------CTTAATGAGTTTG-TTTGACAAACATC---CA-GGCCT-CAACCCAAACCT----C-TAC-AATC-TCGATATTATAACAT---TTAGTTACAGA-ATAA--TTATAAAGGAGCTG--A--A-AAAAAG-T-------------------------GGTATGTCCCAAA-ATATAGA-AT-GTTTTATATTT---------AAT-G----TAATA--T-T-ACAAAC-CATATC-ATTAAAACTCGTACATG-TATAA-G--AAACGTCAATACAATGTGTCAAGTCTCTGAG-C------G--GTCAATAT-GCTC-TCC-GA--TTACAA--AAACAC-AT-------------TTCCCCCAACGAAACAGTTAGAA--AACT-----T-GGAAAT----GCCTCGA------TAGTT-T-AAGCAT----ATTTTAA-TAG---AT-TGTATG-CG-TAATTTAGA-GTAAACGCCC-CCTTATTTTT--AAA---A--ATTCT-TGC---CCAACCCCAACTCCT-TG-TGGTCAAAGG-TTTT-CCTTTTCGAT----GCCCCCCTCCCCTTTCCC-----AC-TT-AAAC-------------------CTAAA-T-TG----CCTACACTTTGGAAA---A-----CAG---TG--CCAAGG-T------GTCATT-GCAAA--TTAA-AAATCTAAC-A--------TT---AT--T---TCTCAAAA---GC---A--TTT-----TTTAT--GAAAGTGTAACATCTGA-A
gi|4 : tgatccttttatttatttttgaattatgaaatatttaattTTT----AAA--CGCC-AAATAC----------CTTAATGAGT--A-TTCGACAAACATC---CA-GGCCT-CAACC--AATCT----C-TAC-A----------TTA--ACAT---TT---TACAGA-ATCC--TTATAAAGGAGCTG--A--A-A----G-TANNNNNNNNNNNNNNNNNNNNNNNNN-TGTGTCCCAAACATATAGA-G--ATGTTATATTT----------CATG----CATTA--TATTACAAA-TCATGTCCACTAAAACTCATACCTGCTATATTG--AAATGTCAAT-CA-TGTATCAAGTCTC--A--CTCCTCAG--GTCAATAT---CC-TCACGAATCTACAACAAAACACCATAC-AATA---AAGTTCTCCCTACGAAACAGCTAACA--AACT--AACTGGGAAATA---AGCTC---A---GTAGTT-T-A-GCAT----TATTTAA-TTGCCCAT-CCTATGACGCTTATTAAGA-GTAAACCAC--CCCTA-TTTT--AAACACA--ACTCT-TG----CCAACCCCAACCCC--TG-T-GTC-AAGACTA-C-CCCTATTGAT----GCCCCT--------TCCC-----AC-TTGAAAC-------------------CTAAATT-TGCC--CCTACACAG--GAAACTCA-----CAG---TAGCCCAGTGAT------GTCATT-GC-
gi|5 : tgaATCTAAA-AGAAGC---TT---ATCGT---TCTCAAAAA-TACTTCA--TTTCTTTTTTTATTTGAAAGAGTAA-ATCTGACAGTACTCA-CATTTTAATGCGAATGGCAAA-CTCAGTGTTCATTT-AA-TTCACAATTACTAAGTATTAAACACATTATATGGAATCTGCTTATCTGA---TGCTACATCACTATA-TGATAGAAT-ATGAACTAAA-------A-----AT-GTACAGTAA-----AAGTGCACACATAAGCCTAACTAATGG----TC-AAACGAAGCAATTTTT-GAAGTTATTCAA--CAATGACGACAA---GCTGAATCCTGATTT-CA-TGCAAAA--AAAATAG-GCAATTCGCAGTTTAAAAACACTAGA-AACA-TCACATCTT--TG---CGT--TGA--CGCAAG-T--CACA-CAA-CTTACGAG----TTATATCAAAATTCCACC---CTTCTCAGATCA-AACAAGCAATCAC--GATCCAGCTTATAAGAATAGGCATTTGAGC--GACATGCTTGTTTCAT-AAAATTCCCATGGCACAG-TACATAAGAC-ACTC
gi|6 : ACA-ATTATTGCT-CAAAAATGAAA-TTGAGGATGATATTTTTTTAAAA--CACT-AAATTC------------TA--CAGT--A-TTCGACAAACATC---CA-GGCCA-CAACC--AATCT----C-TAC-AATA-TCGATATTA--ACAT---TT---TACAGA-ATCA--TTATAAAGGAGCTG--A--G-A----G-T-------------------------G-TGTGTCCCAAA-ATATAGATGT-ATGTTATATGT---------ACTTG----TAATA--act
gi|6 : AAGTCTC--AG-CT-----G--GTCAATAT-GCTC-TCCCAA--TTACAA--AAATAC-TTACCAATA---AA-TTCCTCCAACGAAACAGCTAGAA--AACT--A--T-GAAAAC-----GCTCGA------TAGTT-T-ATGCAT----ATTTTAA-TTG---AT-CTTATG-CG-TAATTTAGA-GTAAACCACA-CCCTGTTTTT--AAA---AACATTCT-TG----CCATCCCCAACCCCT-TG-TGGTC-AAGG-TACC-CCCTTagtctcagctggtcaatatgctctcccaattacaaaaatacttaccaataaattcctccaacgaaacagctagaaaactatgaaaacgctcgatagtttatgcatattttaattgatcttatgcgtaatttagagtaaaccacaccctgtttttaaaaacattcttgccatccccaaccccttgtggtcaaggtaccccctt
gi|7 : acaattattgctcaaaaatgaaattgaggatgatatttttttaaaacactaaattctacagtattcgacaaacatccaggccacaaccaatctctacaatatcgatattaacattttacagaatcattataaaggagctgagagtgtgtgtcccaaaatatagatgtatgttatatgtacttgtaatATGG-ATTTGCTTAT-TGA---TGTCA-ATCAT--TA-TGAATAAATAATCA--TA-----T---A-----AT-GTACATTAAAAA-TAATTGCAGAC--AAGCAT-ACTAATGG----TCCAAATTTATCAA-TTTG-AA--TTATTT-T--CAGTGACGA-AAGAATTTGAACA--GATTTTCA-TG----ACAAAAATTG-A-AACT-GT-GTCTAAAAA---TAG--AACATTCACATTTTGTTGAAAGGTCATAAATC-GAAG-TGCCGCG-CAACCTCA-GAG----GT-TATC----------C--------------A-AA-AAGCAACC-C--AA---GG-CTATAAG-A-AGGCAT---AGTGGGGCTTGCTTTATCCATAAAAATTCCAACGG--CCGTTACATCGGG--ACTTCA
gi|8 : ATATT----------ATTTA----TA-TA--T-TTACAACCT-AT-TC-ATTTAAACT-------------A-GTTAAACTTCA-T-CA----GTCAGGTCTCG-AG-T---------GTCA-TAT-GCTC-TCCCGG-----------------ATACAAACA---AA-TT-TCCCAAC-AAACG---AGAA--AA-T--A--T-G---AT-----GCTC-------ATA-TT----TGCAT----ATTTTAA-T-----AT--TTA-G-C--TAATT------TGAACC-CA-CC--A-TTTT--AAA---A--ATT-T-TG----CCAACCCCA---CCT-TG-T--TC-------ATC-CCCTCCC--------CCCCCTT------TCCC-----AC-TT--TAC-------------------CT-AA-T-TG----CCTACAC-T--TAAA---A-----C-G---TG--CCAA-G--------GTCATT-TC-AA--TT-A-A---CTAAC-A--------TT---ATC-T---TCTCAAAA---GC---A---TT-----TTTAT--G-AAGT-TAACATGTGA-TTTACTCA-ctattg
gi|9 : aACA-ACCATTGTT-CAATAATGAAA-TTGAGGAAGATATTT-----AAA--CGCC-AAATAC----------CTTAATGAGT--A-TTCGACAAACATCCTGCA-GACCT-CAAC----------------C-AATC-TCGATATTA--ACAT---TT---TACAGA-ATCA--TT-TANNNNNNNNN--N--N-N----N-N-------------------------N-NNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNTGACAGTGTGACTGGGGCTTTATA--T-ATACAAACTCATATC-AT-----GTCATGCCTG-TATAA-G--AAACGTCAAT-CAAAGTGTCTCGTCTC--AG-CT-----GCTGTCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTTATCAAAAACATTCTGGTATTTCAGTATTAAATGTCACAATTCGCATTTGAGCATAAAGGCAAATGTTAATACGTCATTTTGATTAAAATC
Unaligned ( gi|17 ): AGCATTTCAGAAATCTGGCCTGTGAATACATGGTTTCTCAGGCAAGCATTGAATATCCCATGGATGACATAGACAGCAAGCGGGTC
Unaligned ( gi|20 ): CTGGGGCAAATGCCGAAAATTCGACAATTAATTGCTGGTTTATTTTAATTATCATTTTAGT
Unaligned ( gi|21 ): TGCATTCATTTTTAACGACATGGGCTGACGATGATTATTTTCAGCGCTTGTATG
Unaligned ( gi|22 ): AGATACATAACTAGCAAGCAATGCCTCTATAACACCTGAAA
Unaligned ( gi|23 ): GCAGGAACACGTAAGTACTAAAAATGTGAGTTTT