lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111 1111111111111111111111111
lowQualScore : 1 2 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222 1 4 44444 222 2222222 22 444 22 1 2 11 0000000000000 22222 2 66666666666666666666 1 1 33333 1 111 3333333 33 333 2 22 222 22222 77777777777 2 1 22 1 2 1 2 555555 1 22 22 4 2 2 1 2 2 11 1 2 1 2 333 4 1 11 55555555555 444444444 11 2 3333 2222222222222222222222222 1 222 1 2222 44444444444 66666666666 1 1 999999999999999999999 1 22 1111111 11111 1 11111111111111 44444444444444444 777777777777777777777777777 11111 11111 11 11111 666666666 1 11 2222 1
lowQualScore : 5 0 6 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 8888 5 6 0 88888 999 2 9999999 77 999 6 66 5 0 99 4444444444444 22222 6 6 2 0 0 6 0 6 66666666666666666666 2 7 3 00000 3 777 2222222 99 888 0 3 66 888 2 00000 00000000000 0 6 3 2 5 66 4 5 77 0 5 0 777777 1 00 77 6 6 0 6 3 0 0 7 6 4 3 0 2 00 6 5 0 88 5 0 444 6 2 66 99 0 5 88 22222222222 6 666666666 77 0 9999 3 0000000000000000000000000 5 4 222 6 6 5 4444 6 88888888888 66666666666 2 2 000000000000000000000 3 6 11 1 9999999 3 9 6 44444 2 5 7 5 4 2 66666666666666 66 2 5 5 5 3 2 11111111111111111 5 5 555555555555555555555555555 6 99 55555 55555 9 6 22 66666 3 8 5 111111111 0 88 1 6 4444 3 9
lowQualScore : . . . ............................................................................................................................... . .... . . . ..... ... . ....... .. ... . .. . . .. ............. ..... . . . . . . . . .................... . . . ..... . ... ....... .. ... . . .. ... . ..... ........... . . . . . .. . . .. . . . ...... . .. .. . . . . . . . . . . . . . .. . . . .. . . ... . . .. .. . . .. ........... . ......... .. . .... . ......................... . . ... . . . .... . ........... ........... . . ..................... . . .. . ....... . . . ..... . . . . . . .............. .. . . . . . . ................. . . ........................... . .. ..... ..... . . .. ..... . . . ......... . .. . . .... . .
lowQualScore : 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5555 0 0 0 00000 000 5 5555555 55 000 0 00 5 0 00 0000000000000 00000 0 0 5 0 7 7 7 7 33333333333333333333 7 3 3 77777 3 777 5555555 00 000 0 0 00 555 5 55555 00000000000 0 0 0 5 0 00 0 5 00 0 0 0 555555 5 00 55 0 0 0 0 0 0 0 0 0 0 0 0 5 00 0 0 0 55 0 0 555 0 5 55 00 0 0 55 00000000000 0 000000000 55 0 0000 0 5555555555555555555555555 0 0 000 0 0 0 3333 7 77777777777 33333333333 3 0 333333333333333333333 3 7 00 0 6666666 2 0 7 00000 2 7 6 7 3 4 66666666666666 00 1 0 7 7 0 3 77777777777777777 0 0 888888888888888888888888888 7 22 22222 22222 0 7 77 00000 5 0 0 000000000 0 33 0 7 0000 3 7
consensus : AGTGCTCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTCCTTGTTCGCACCACCATCACACTCANATCGAAGGGCATGAAGAAAGA-----------G-GA-GAAACNCAACAACCAGTGGNTACGANACGAGGCTCTACTGATACCAGACGTACAGGAACA-GATAC-ATATATAGCNTGTTCGAGANAGTCACNCTAAGCTCTGGAGAAGAAGA-GGCAAAGGTGAGCAGGAAGGACGGTGTNGAGGTTAGAAGCAATATAACAAGGAGGAAANCAANATACAGAAGCAGNCGGAAGGGATTCTCGGGAGACGCAAGAAG---AT-----AAAAA-A---CGTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAGCAGATATCAACAAAAGANATACTAGGGACAAAGNATCAAGAAAGANTAAAAAACACAACTGAGGGAACAATACAGAGAGGAAGATNAGGGGGTTTAAAAGACATGAGANCAGAACAGATAAACGGCAGTGGAGTTGACANCATCGCAANAGACGCAGAGTAAAGCNGCAGCAAGCCAACNNACGAAGAGCACTGTACCAAACTACTAGTAACAAAGNTTCNATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGGGGGGGAAANATCCATCACCGGAAAAGGAAGAGACCATGAACNGGTGGGCAGAGCACTTCGCACGAANTTCTTNACCGGCCTGAACCAGATGAATCNGGTGAGTGAGGTCGAACACAAACGNNAGAGGAGCAGATANAAGACATCAACNNTGATGAACCGNGCATGGCCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAACACCAGGTATCGATGAAATACAAGCAGANCTTCTAAAGGCAGAACATANNGTTTACAGCGGGANAGATTAGAGAAGCTCTTCGGTGCATTTGATATGGGGAGANGAGCAAGCTCCACAAAGCTGGAAGAAAG---GACTGATAGTGAAG-CT-C--AAGAAAGGCGACCTGAG-A--A---GCGAGAATTGGAGGGGCATCGC-C-TC-TGCCA-CAGTNAGCAA-AGTGCTGGGTCGCATAGTTGTGGAC--AGGATCAGGAAAGGGA-TTGACAAA-AGA-CTTAG-GAANGAACAAGCA-GGNTACCG-TAAG--GG--A--AGAGGAACNACNGAACAG-ATATT-TATNCTCAGAAACAT--CATCGAG-NAG--GTTAACGAGTGGAAGGCAAC-C-A-TTTA-----T-CA--TA-----AC-T--TCGTCG----ATTTC---G-AGAAAGCGTTTG-ACTCAGT--T--CATAGAGAC-AGCTTTGAA-----ATGGANAATCTT--AGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( gi|3 ) : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-----------------CCACCAT--C-----------------ACACTCAAATTGCGAAGCA-GCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGCT-ATTCGAAACAG--ACAC-AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGA--AAAGC-ACACACAGAGGCAGCCA-AAGAGATTCTCGGGAGGCGCCAGAAG---A------AAGAA-A---CGTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAGCAATACTAGGGACAA--GATC-AGAAAGATT-GAAAACACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAG-TTAAAAGACA---GAT-----CAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACC-AACTA------ACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAAT-CATCACCGG-AAAGGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCG-ACACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCG-AATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAA---GACTGATAGTGAAA-CTACCCAAGAAAGGCAACCTGAG-AGAAA--GTAAGAATTGGAGAGGCATCACCCTTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGAT--AGGATCAGTAAAGGGA-TTGACAAA-AGA-CTCAG-GAAGGAACAAGCA-GGCTACCG-TAAG--GG--A--AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACAT--T-TCGAG-AAG--GTTAACGAGTGGCAGGCAACGC---TTTA-----T-CA--TA-----AC-T--TTATTA----ATTTT---G-AAAAGGCGTTTG-ACTCAAT--T--CATAGAGAC-AGCTT---------ATGGACAATCTT--AACAGCTTAT---GGAGTGC-CCAAAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTCC-----------------ACACTCACATTGAAGGGCATGAAGAAAGA-----------G-GA--AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAATCACCC-AAACTCTGGAGAAGAAGA-GGCAAAGGTGAACAGAA-GGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCG---GGCGACAAAAA---AT-----ACGAA-AGGCCGTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATATATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACA---AAAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGACA---GATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAAACTA------ACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAG---GACTGATTGTAAAG-TTACCCAAGAAAGGCAACCTGAG-----------AGAATTGGAG-GGCATCGCCTATC-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGAC--AGGATCAGGAAAGGGA-TTGGCAAATAGA-CAACG-GAAAGAATAAGTAGGGCTACCG-TAA---GG--A--AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAG--TATCAAACAAG--ATTAACGAGTGGCAGGCAACCT---TTTACC---T-CA---A-----ACTT--TTGTTG----ATTTTTTGA-AAAAAACGTTTGAACTCAAT--T--CA-AGAGAC-AGCTTTGAAACATCATGGACAATCTT--AGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTGA-----------------CCACCAT--CTTGTTCGCACCACCATCACACTCAAATCGAAAGGCATGAAGAAAAA-------------GA-GAAA-ACAACAACCAA-GGC-ACGATACA-GA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGCG-GTTCGAAACAG--ATACTAAGCTCTGGA--AGAAG--GGCAAAG-TGAGCAGGAAGGACG-TATTGAGATTAGAAACAATATAAT--GAAG-AAAAC-AGATACAGAAGCAGCCG-AAGGGATTCTTGGGAGAGGCAAGAAG---ATTAAAAAAAAA-A---CGTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|6 : ttccattaaagacaccagTCTTGGGAGACGCAAGAAGGATA------AAAAACA---CGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GATACTAGGGACAA--TATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGG-TTAAAAGACATGAGAA-----CAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACC-AACTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACAT-CATCACCAG-AAAGGAAGAGACCATGAACTGGTGG-CAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCG-ACACAAAC-GTAGAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACA--CAGTTTACAGCGGGACA-------GA------TTGGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAG---GACTGATAGT--------------AAAGGCAGCCTGAG-AGAAT--GTAAGAATTGGAGGGGTAT------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGAC--AGGATCAGGACAGGGA-TTGACAAA-AGA-CTCAG-GAATGAACAAACA-GGCTACCG-TAAG--GG--A--AAAGGAACCACTGAACAA-ATATT-TATCCTCAGA
gi|4 : GAAAAACGGATTAATA-TGAAAACTCCGAAAGAAAAGTGACATAAGCACTAATGGCGGCAATTGGAGAGA-ATTACACCTCATACCAACAACTAACAAGAAT--TGGG--AGACAATTC---ATCAAGGATT-GTGAAGAAAGCTGACAAA-CAT-CTTAA-AAATGAACAAGCT-GGGTTCAG---AGCTGA--G--AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTAT-TCGAACAAGCCATTAG-GAATGGAATTCAAC------TTG-----TACA--T-------C-TGCTTCGTAGAAGATTTT---T-AGAA-GTATTCG-A--CAAT--TA-CATAGAAA--ATATT---------ATTGAAAATCATAAAACA-CTAAC---GGAATCC-CTATAA
gi|17 : aaGAC--AGGATCAGGAAAGGGA-TTGGCAAA-AGA-CACGG-GAAAGAATAAGTA-GGCTACCG-TAAG--GG--A--AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAG--TATCAAA-CAA--GTTAACGAGTGGCAGGCAACGC---TTTA-----C-CT--CA-----AC-T--TTGTTG----ATTTT---GAAAAAAACGTTTG-ACTCAAT--T--CATAGAGAC-AGCTTTGAACATC-ATGGACAATCTT--AGCAGCTTAT---AGAGTGC-CCAGAAAgatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|8 : GG-TTGACCAA-GCATCTTAGAGAAGATACAGGCA-GGAT-CCG---AG--AT--A--GGAGTAA--ACA-AGCAG-ATTTT-CACACTCAGA-------C-TCGTG-GAG----CAAAGAGTGAATGGAAAC-CAA-TCTAGTACAT-C---TG-----AT-T--TCATCG----ACTTC---G-AGAAAGCATTTG-A---AGTGTT--CAT-GAGACCAGCTT---------ATGAA-AATC
gi|5 : ac-TTGACCAA-CAT-TTTAG-AGAAGAACAGGCA-GGATTCCGAGAAG--GT--C--ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACAT--CGTTGAG-CA------AAC-AGTGGAATGGAACTCCAATCTA-----T-AA--TACAGCTGT-T--TCATCG----ACTTC---G-AGAGAGCTTTTG-ACAAAGT--TAACCTTGATAC-A--CT---------ATGGAAAATCatgggaaaaatatggcatttccaggaaacttcgtcagaatcattaagtgcatgttatacacttacaacgaatgtgttgtaacatcaaacggaaacatcagaactagtttgaaatcaaatcggagtcaaacaggctgcacgtctgactttcttgttttaatgggtcgtagtctggataataaaactcaataagcatgagacaacacaggaattcagatgaaatttcacatcgaaactagatgacttaactgatgctgacgacatcgcattgatctcagtaaaggcaacaactaaagaaagttaactgatgtaaacgtagatatccagtccgatggcctacaaaattaaacacc
gi|9 : cgAG-AGATGAACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATA-C-TGGAG-CAG--GTCAatgggaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|29 : tattaaggaagtagaccaacatctA-----T-CAATCA-----AC-T--TTATTA----ATATT---G-AAAAGGCGTTTG-ATTCAGT--T--GATAGAGtagaacggaattccaacctacttgttttacacatgcgtggtgcaccgagacactatggaacataccagacaaatgtatcagactagtttagtgcttatcaccggaagtggaacatcagagtagtttaaggtcaaatctggagttgcagaaggatgcagcatgtcggaagtcttgttcgtataagttagtcatatactagaatatgaagaaagcaacaagtgctgaaaacacaggcatgcgccggaacatgacataaaaaccatttgatcattgcactgcttacaagatccatagagcaaatgcagatgaaagtgaactagtccgacaggcatttcaaatcaactggtctcaacatcaacagctcaaagactaaagatatgagaattaatgccaaccacactc
20 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TTGGAAGATGATCATCCAATAAATTGCGAAGGAAGTTGATAAATATATTCCGGATGCACAAGCTGGATTTGAAGCTGACAGAGGAACGCCATGACATGTATTTAATCTCGGAAATATTATCGAACAAGCAATATAATGGAATTCCAGCTGATACATCTGATTCGTAGATTGGTAAAAGGCATTCGATAACGTAGATAGAAAAATATTATGGAGATGAAAGAAAACGTTACAGAAGGTCACAAAACACTATGAAATATCTGAAAAGAGTATACAATTAGTGGAAAAGCATGTATAAGAACAGCCAGTGCGCAATCTTGACCGGGAATGAAACAAACAAATGATTTGGAATAAAACATGGATTAAGGCAAACTTGCAATATGGCTGGCTTATTATTTCTCTTAACAAAAGAATGGATTAAGAGATGAAAGAGAGAAGATAAGAACAAAGGGATAAGATGGAATTTGACCTCCAAACTTGAGGACCTGGACTATGCAGACGACAAATCACTTCTCACTAGCAACAGGGTCGCTTAAAAATAAAAAAATGGACAAACTTGTAATATATGTTGAGTCTACTGGACTCAAGATGTATGTCACAAAGACAGAAGTTATGAGGATGAAAACCAAAACAACAACCAAGGTATAAAAGCAAGATACAAGGAGATGGAAAACGTGACTAGTTATGTGTACATGTACTTCTAATACGGAATGTTAAAGCATTAAAGAAGTAGAAGATGAACACATCCGGATAAGACTAAGTCTAACCAGATCTATTTTCTTCATCCAACTCAGCAGAAAAACAAAAACTATACTCCTCAAATACAACGTAGCATCAGTTGTGGTCTATTGGAGTGAAACACGTAAGATGAACACAAGTAGAAAAAAACGCATTCAACTCATTTTTACACATTGTCAAGTGCTTAAGACAAATACTAAAAATCCACAGGTTACACAATGTTCGAAACGAGATAATCTGGGAAACAACACGAATGAAAACAATACGTGTCATTATAATGAAAAAAAGGTGGGCAAGGTTGGAGCATTTTGTAAAGATGGGCAAGAACAGATTTGCAAGAATGTACGTTACTTGGACTTTTTAACACAAAAAGTAAAACAAAACCAAAATAGACGTGGTTAAGAACTAAGGAAAGAGAACAAAATGAGATTGAGTTTAAATCATAGGAAGAAGCAACCAAAGTAGCGCAAGATAGATAAAAAAGGGCCTTGTTCGCGACTGTATTCTCCACATGAAAAGAAAGAAAGAAATCAAATCAGT
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA
Alignments
lowQualScore : 11 444444444444444444 55555555555 11 1 555555555555 111 333333333333333 1 2 1 1 2 22 2222222 111 22 11 11 33 1 2 2 22222222 222222 1 1 111 1 111 11 333 11 55555555 2 2 2 555555 33 11 1 2 2 11 222 11 2 11 7777777777777777777777 6666666666666666 777777777777 55555555555555555555 1 111 11111 1 11 111111111 111 1111 5555555555555555555555555555 1111 111111 11 55555555555 222 1
lowQualScore : 6 33 333333333333333333 55555555555 1 88 3 000000000000 6 77 7 666 1 444444444444444 7 5 3 3 3 3 11 0 1 8888888 222 00 33 0 6 33 1 00 7 1 3 1 1 8 0 2 3 99999999 111111 1 3 0 0 444 0 111 77 66 111 44 1 7 7 999 0 0 1 0 7 7 00000000 3 1 1 3 1 7 22 0 3 6 7 7 888888 11 44 00 7 0 0 1 33 7 7 1 2 0 0 3 1 1 3 1 44 111 1 22 1 0 7 6 7 7 4 0 00 1 0 0 3 99 1 1111111111111111111111 6 1 0 2 0000000000000000 2 000000000000 2 6 55555555555555555555 44 0 2 11 3 0 6 8 444 5 11111 0 1 4 4 1 3 44 555555555 2 1 3 4 4 1 222 66 4444 888888 0 4444444444444444444444444444 55 3333 555555 5 88 77 33 1 6 22222222222 1 333 3
lowQualScore : . .. .................. ........... . .. . ............ . .. . ... . ............... . . . . . . .. . . ....... ... .. .. . . .. . .. . . . . . . . . . ........ ...... . . . . ... . ... .. .. ... .. . . . ... . . . . . . ........ . . . . . . .. . . . . . ...... .. .. .. . . . . .. . . . . . . . . . . . .. ... . .. . . . . . . . . .. . . . . .. . ...................... . . . . ................ . ............ . . .................... .. . . .. . . . . ... . ..... . . . . . . .. ......... . . . . . . ... .. .... ...... . ............................ .. .... ...... . .. .. .. . . ........... . ... .
lowQualScore : 7 33 555555555555555555 00000000000 0 33 3 333333333333 7 77 3 777 0 000000000000000 3 0 3 3 3 7 33 7 0 3333333 333 77 33 7 7 33 0 77 3 0 7 0 0 7 7 5 0 22222222 222222 0 2 0 0 000 0 000 33 33 333 77 0 3 3 333 7 7 0 7 3 3 77777777 7 0 0 7 0 3 00 7 3 7 3 3 000000 77 77 77 3 7 7 0 33 3 3 0 0 7 7 3 0 0 3 0 77 777 0 00 0 7 3 7 3 3 0 7 77 0 7 7 7 77 0 3333333333333333333333 7 0 7 5 5555555555555555 0 888888888888 5 5 88888888888888888888 22 0 5 55 2 2 5 0 000 0 66666 6 0 4 4 0 1 44 111111111 6 0 6 4 4 0 000 00 4444 999999 7 5555555555555555555555555555 22 0000 111111 0 11 99 66 7 7 66666666666 0 333 3
consensus : AGTGCTCAGATCAGCCAGACATTGGGAGCGAACC-ACCATCTTGTTCGCCACCACTCCTTGTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAG-CAC-C-AAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAGCC-GAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NATACTAGGGACAA--NATCAAGAAAGATTAAAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAGTTTAAAAGAC---AGA-CAGAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAAAC------TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAATCCATCACCGGAAAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCGAACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAAA---CT---C---AAGAAAGGCGACCTGAG-G--AA-G-GTGAGAATTGGAGGGGCAT--CGCCC-TC-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGACA-GGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAG-CAGGTCA--ACG-AGTGGAAGGCAACC---N-TTTA-----T-CA--TA-----AC-TTCGT---CGATTTT---G-AAAAAGCGTTTG-ACTCA--GTT--CATAGAGA-CAGCTT-TGAA-----ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( family-2914 ) : AGTGCTCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTCCTTGTTCGCACCACCATCACACTCANAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACNCAACAACCAGTGGNTACGANACGAGGCTCTACTGATACCAGACGTACAGGAACA-GATAC-ATATATAGCNTGTTCGAGANAGTCACNCTAAGCTCTGGAGAAGAAGA-GGCAAAGGTGAGCAGGAAGGACGGTGTNGAGGTTAGAAGCAATATAACAAGGAGGAAANCAANATACAGAAGCAGNCGGAAGGGATTCTCGGGAGACGCAAGAAG-AT-----AAAAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAGCAGATATCAACAAAAGANATACTAGGGACAAAGNATCAAGAAAGANTAAAAAACACAACTGAGGGAACAATACAGAGAGGAAGATNAGGGGGTTTAAAAGACATGAGANCAGAACAGATAAACGGCAGTGGAGTTGACANCATCGCAANAGACGCAGAGTAAAGCNGCAGCAAGCCAACNNACGAAGAGCACTGTACCAAACTACTAGTAACAAAGNTTCNATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGGGGGGGAAANATCCATCACCGGAAAAGGAAGAGACCATGAACNGGTGGGCAGAGCACTTCGCACGAANTTCTTNACCGGCCTGAACCAGATGAATCNGGTGAGTGAGGTCGAACACAAACGNNAGAGGAGCAGATANAAGACATCAACNNTGATGAACCGNGCATGGCCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAACACCAGGTATCGATGAAATACAAGCAGANCTTCTAAAGGCAGAACATANNGTTTACAGCGGGANAGATTAGAGAAGCTCTTCGGTGCATTTGATATGGGGAGANGAGCAAGCTCCACAAAGCTGGAAGAAAGGACTGATAGTGAAG---CT---C---AAGAAAGGCGACCTGAG----AA---GCGAGAATTGGAGGGGCAT--CGCC--TC-TGCCA-CAGTNAGCAA-AGTGCTGGGTCGCATAGTTGTGGACA-GGATC---AGGAAAGGGA-TTGACAAA-AGA-CTTAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACNGAACAG-ATATT-TATNCTCAGAAACATCA-TCGAG-NAGGTTA--ACG-AGTGGAAGGCAACC---A-TTTA-----T-CA--TA-----AC-TTCGT---CGATTTC---G-AGAAAGCGTTTG-ACTCA--GTT--CATAGAGA-CAGCTT-TGAA-----ATGGANAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTC-----------------CACACTCACAT--TGAAG-GGCATGAAGA------AA---GAGGA-AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAATCACCC-AAACTCTGGAGAAGAAGA-GGCAAAGGTGAACA-GAAGGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCGGGCGAC---AAAAA-AT-----ACGAAAGGCC--GTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATATATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACAA---AAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGAC---AGATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAAAC------TAACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAGGACTGATTGTAAAGTTACC---C---AAGAAAGGCAACCTGA------------GAGAATTGGA-GGGCAT--CGCCTATC-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGACA-GGATC---AGGAAAGGGA-TTGGCAAATAGA-CAACGGAAAGA-ATAAGTAGGGCTACCG-TAA---GG---A-AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAGTA-TCAAACAAGATTA--ACG-AGTGGCAGGCAACC---T-TTTACC---T-CA---A-----ACTTTTGT---TGATTTTTTGA-AAAAAACGTTTGAACTCA--ATT--CA-AGAGA-CAGCTT-TGAAACATCATGGACAATCTTAGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTGA-----------------CCACCAT--CTTGTTCGCACCACCATCACACTCAAAT--CGAAA-GGCATGAAGA------AA----AAGAGAAA-ACAACAACCA--AGGCACGATAC-AGA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGCG-GTTCGAAACAG--ATACTAAGCTCTG--GAAGAAG--GGCAAA-GTGAGCAGGAAGGAC-GTATTGAGATTAGAAACAATATAAT---GAAGAAAAC-AGATACAGAAGCAGCC-GAAGGGATTCTTGGGAGAGGCAAGAAG-ATTAAAAAAAAAA---C--GTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|17 : ttccattaaagacaccagGACA-GGATC---AGGAAAGGGA-TTGGCAAA-AGA-CACGGGAAAGA-ATAAGTA-GGCTACCG-TAAG--GG---A-AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAGTA-TCAAA-CAAGTTA--ACG-AGTGGCAGGCAACG---C-TTTA-----C-CT--CA-----AC-TTTGT---TGATTTT---GAAAAAAACGTTTG-ACTCA--ATT--CATAGAGA-CAGCTT-TGAACATC-ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|2 : AAGGAAGTTGATAAATATA-TTCCGGA-TGC-ACAAGCT-GGAT-TTG--AAGCTGA---C-AGAGGAACGCCATGACAT-GTATT-TAATCTCGGAAATATTA-TCGAA-CAAG-CA--ATATAATGGAATTCCAGCTG-A-TACA-----T-C---TG-----A--TTCGT---AGATTGG---T-AAAAGGCATTCG-A
gi|29 : ttggaagatgatcatccaataaattgcgA-----T-CAATCA-----AC-TTTAT---TAATATT---G-AAAAGGCGTTTG-ATTCA--GTT--GATAGAGtaacgtagatagaaaaatattatggagatgaaagaaaacgttacagaaggtcacaaaacactatgaaatatctgaaaagagtatacaattagtggaaaagcatgtataagaacagccagtgcgcaatcttgaccgggaatgaaacaaacaaatgatttggaataaaacatggattaaggcaaacttgcaatatggctggcttattatttctcttaacaaaagaatggattaagagatgaaagagagaagataagaacaaagggataagatggaatttgacctccaaacttgaggacctggactatgcagacgacaaatcacttctcactagcaacagggtcgcttaaaaataaaaaaatggacaaacttgtaatatatgttgagtctactggactcaagatgtatgtcacaaagacagaagttatgaggatgaaaaccaaaacaacaaccaaggtataaaagcaagatacaaggagatggaaaacgtgactagttatgtgtacatgtacttctaatacggaatgttaaagcattaaagaagtagaagatgaacacatccggataagactaagtctaaccagatctattttcttcatccaactcagcagaaaaacaaaaactatactcctcaaatacaacgtagcatcagttgtggtctattggagtgaaacacgtaagatgaacacaagtagaaaaaaacgcattcaactcatttttacacattgtcaagtgcttaagacaaatactaaaaatccacaggttacacaatgttcgaaacgagataatctgggaaacaacacgaatgaaaacaatacgtgtcattataatgaaaaaaaggtgggcaaggttggagcattttgtaaagatgggcaagaacagatttgcaagaatgtacgttacttggactttttaacacaaaaagtaaaacaaaaccaaaatagacgtggttaagaactaaggaaagagaacaaaatgagattgagtttaaatcataggaagaagcaaccaaagtagcgcaagatagataaaaaagggccttgttcgcgactgtattctccacatgaaaagaaagaaagaaatcaaatcagt
gi|3 : AGTGCTCAGATCAG-CAGACATTGGGAGCG-ACC-ACCATC
gi|3 : ACCACCATCACACTCAAATTGCGAAGCAGCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGC-TATTCGAAACAGACAC---AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGA--AAAGC-ACACACAGAGGCAGCC-AAAGAGATTCTCGGGAGGCGCCAGAAG-A------AAGAAA---C--GTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAGCAATACTAGGGACAA--GATC-AGAAAGATT-GAAAACACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAG-TTAAAAGA--------CAGATCAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACC-AAC------TAACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAAT-CATCACCGG-AAAGGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCG-ACACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCG-AATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAAGACTGATAGTGAAA---CTACCC---AAGAAAGGCAACCTGAGAGA-AA---GTAAGAATTGGAGAGGCAT--CACCCTTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGATA-GGATC---AGTAAAGGGA-TTGACAAA-AGA-CTCAGGAAGGA-ACAAGCA-GGCTACCG-TAAG--GG---A-AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACATT--TCGAG-AAGGTTA--ACG-AGTGGCAGGCAACG---C-TTTA-----T-CA--TA-----AC-TTTAT---TAATTTT---G-AAAAGGCGTTTG-ACTCA--ATT--CATAGAGA-CAGCTT----------ATGGACAATCTTAACAGCTTAT---GGAGTGC-CCAAAAAacactcaaattgcgaagcagcagaaagaccccacaacgcgcgacgaaacacaacaccaacggctacatacaagacttttgataccatactacatgaatatgataccacaatagctattcgaaacagacacaagctctggaagaaaatgacaaagcgaacagaaaggacgtgtacaggttagaagcaacgcttcggaaaagcacacacagaggcagccaaagagattctcgggaggcgccagaagaaagaaacgtggaacagcaacgaatcttggaaactaatgaagaaagaacagatatcaacaaaagcaatactagggacaagatcagaaagattgaaaacacagctaagagaacaatacagagagaaagatcagaaagttaaaagacagatcagataaacggcagtgggtcgacaacatcgcaacagacgaagaaaaagcagcagcaagccaacatatgaagacactgtaccaactaacaaaaattatatgtaatgaaagaccaagataagtgcatctgtgctagacaaggagagaaaaatcatcaccggaaaggtagagaccataaacaggtggacagaacactttgcagaagttctcaaccggcctaaagcagataattcggtgagtgatgtcgacacaaactaagaagagcagatagaagacatcaactgtgatgaaccaagcatggtcgaatcaaaggggcgctaaagatgctaaagaataacaaagcaccagatattgatggaatacaagcagattttttaaaagcagacatgcggtttacagcgggaaatatgaaccctttggtatgatatggggagatgtggaagctccataaaactagacgaaaagactgatagtgaaactacccaagaaaggcaacctgagagaaagtaagaattggagaggcatcacccttctgccagtggtgagcaaagtgctgggccgcataattgtagataggatcagtaaagggattgacaaaagactcaggaaggaacaagcaggctaccgtaagggaagaggaaccacagaacaaatatttatcctcagaaacatttcgagaaggttaacgagtggcaggcaacgctttatcataactttattaattttgaaaaggcgtttgactcaattcatagagacagcttatggacaatcttaacagcttatggagtgcccaaaaa
gi|4 : agtgctcagatcagcagacattgggagcgGAAAAACGGATTAATA-TGAAAA--CT---CCGAAAGAAAAGTGACATAAGCACTAATG-GCGGCAATTGGAGAGA-ATTACACC--TCATACCAACAACTAACAAGAAT--TGGGAGACA-ATTCAT---CAAGGATTGTGAAGAAAG----CTGACAAA-CAT-CTTAAAAATGA-ACAAGCT-GGGTTCAG---AGCTGA---G-AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTATTCGAA-CAAGCCATTAGG-AATGGAATTCAAC-------TTG-----TACA--TCT----GC-TTCGTAGAAGATTTT---T-AG-AAGTATTCG-A--CA--ATTA-CATAGAAA-
gi|5 : aa-TTGACCAA-CAT-TTTAGAGAAGA-ACAGGCA-GGATTCCGAGAAG--GT---C-ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACATCG-TTGAG-CA----A--AC--AGTGGAATGGAACTCCAA-TCTA-----T-AA--TACAGCTGT-TTCAT---CGACTTC---G-AGAGAGCTTTTG-ACAAA--GTTAACCTTGATA-CA-CT-----------ATGGAAAATCatattattgaaaatcataaaacactaacggaatccctataagatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|6 : cgTCTTGGGAGACGCAAGAAGGAT-----AAAAAA---CACGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GATACTAGGGACAA--TATCA-GAAAGATTAAAAA-CACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGGTT-AAAAGACATGAGA-----ACAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACCAA-CTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACATC-ATCACCAGAAA-GGAAGAGACCATGAACTGGTGG-CAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCGA-CACAAACGT-AGAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACACA--GTTTACAGCGGGACAGATT-------------GGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGT-------------------AAAGGCAGCCTGAG----AGAATGTAAGAATTGGAGGGGTAT--------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGACA-GGATC---AGGACAGGGA-TTGACAAA-AGA-CTCAGGAATGA-ACAAACA-GGCTACCG-TAAG--GG---A-AAAGGAACCACTGAACAA-ATATT-TATCCTCAGAatgggaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|8 : GG-TTGACCAA-GCATCTTAGAGAAGATACAGGCA-GGAT-CCG---AG--AT---A-GGAGTAA--ACA-AGCAG-ATTTT-CACACTCAGA--C-TCG-TGGAG-CA----A--A-G-AGTGAATGGAAACC---AATCTAGTACAT-C---TG-----AT-TTCAT---CGACTTC---G-AGAAAGCATTTG-A---AGTGTT--CAT-GAGACCAGCTTATGAA-----A
gi|9 : acTAGAGATGA-ACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATAC-TGGAG-CAGGTCA--TAG-AACGGAAatcatgggaaaaatatggcatttccaggaaacttcgtcagaatcattaagtgcatgttatacacttacaacgaatgtgttgtaacatcaaacggaaacatcagaactagtttgaaatcaaatcggagtcaaacaggctgcacgtctgactttcttgttttaatgggtcgtagtctggataataaaactcaataagcatgagacaacacaggaattcagatgaaatttcacatcgaaactagatgacttaactgatgctgacgacatcgcattgatctcagtaaaggcaacaactaaagaaagttaactgatgtaaacgtagatatccagtccgatggcctacaaaattaaacacc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 2 11 1 3333333333333333333333 11 1 555555555555 11 1 1 222222 2 1 1 1 1 1 1 222222 111 22 111 11 222 1 1 22222222 222222 1 1 111 1 111 1111 111 2 2 2 1 444 1 1 1 222 222 11 2 2 1 1 1 2 11 1 33 5555555555555555555555 55555555555555555 555555555 33333333333333333333 1 111 1 11 111111111 444444444444444444444444444 1111 11111 11 6666666666 222 1
lowQualScore : 6 3 0 44 3 3333333333333333333333 88 3 000000000000 6 6 7 55 1 3 2 666666 7 6 3 3 3 3 3 3 888888 222 00 444 6 33 555 6 1 3 1 3 2 3 99999999 111111 1 3 0 0 444 0 111 6 8888 999 3 3 999 3 3 000 3 0 3 7 0 3 6 555 333 1 1 88 7 3 3 2 0 3 3 3 6 7 7 6 7 7 3 0 00 1 3 66 1111111111111111111111 6 2 33333333333333333 2 111111111 0 2 6 88888888888888888888 33 0 2 11 3 0 2 6 8 444 5 1 1 5 1 9 11 555555555 1 0 5 66 5 0 0 99 5 4 44 77 5 1 2 222222222222222222222222222 6 2222 88888 5 1 0 55 2 7777777777 333 3
lowQualScore : . . . .. . ...................... .. . ............ . . . .. . . . ...... . . . . . . . . ...... ... .. ... . .. ... . . . . . . . ........ ...... . . . . ... . ... . .... ... . . ... . . ... . . . . . . . ... ... . . .. . . . . . . . . . . . . . . . . .. . . .. ...................... . . ................. . ......... . . . .................... .. . . .. . . . . . ... . . . . . . .. ......... . . . .. . . . .. . . .. .. . . . ........................... . .... ..... . . . .. . .......... ... .
lowQualScore : 7 3 7 77 3 5555555555555555555555 33 3 333333333333 7 7 3 77 0 3 0 777777 3 7 3 3 3 3 3 3 333333 333 77 000 7 33 000 7 0 3 0 3 5 0 22222222 222222 0 2 0 0 000 0 000 7 7777 333 7 7 333 7 3 777 3 7 3 3 7 3 7 777 333 0 0 33 3 3 7 0 7 3 3 7 7 3 3 7 3 3 7 7 33 0 3 77 3333333333333333333333 7 5 22222222222222222 0 000000000 8 5 5 00000000000000000000 55 0 5 55 2 2 0 5 0 000 7 4 0 0 0 8 22 555555555 0 8 1 11 0 2 9 33 7 0 00 99 7 3 5 111111111111111111111111111 3 1111 77777 7 0 7 88 5 2222222222 333 3
consensus : AGTGCTCAGATCAGC-AGACATTGGGAGCGAACC-ACCATCTTGTTCGCCACCACTC----TTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGA-AACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATCA-GAAAGATTAAAAA-CACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAGTT-AAAAGACA-GA-C-GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--ACTA---ACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAATC-ATCACCGGAAA-GGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCGA-CACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGA---GAANGTGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGACTCAGGAANGAACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AGGTCA--ACG-AGTGGAANGCAACN---NTTTA--T-CA--TA-----AC-TTCGTTGA----TTTT---G-AAAAGGCGTTCG-ACTCAATT--CATAGAGACAGCTTTGAA---C-ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( family-2914 ) : AGTGCTCAGATCAGCCAGACATTGGGAGCGAACC-ACCATCTTGTTCGCCACCACTCCTTGTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGA-AACAG-CA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATCAAGAAAGATTAAAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAGTTTAAAAGACA-GA-CAGAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--ACTA---ACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAATCCATCACCGGAAAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCGAACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAG----GAAGGTGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGACTCAGGAANGAACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AGGTCA--ACG-AGTGGAAGGCAACC---NTTTA--T-CA--TA-----AC-TTCGTCGA----TTTT---G-AAAAAGCGTTTG-ACTCAGTT--CATAGAGACAGCTTTGAA-----ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTC-----------------CACACTCACAT--TGAAG-GGCATGAAGA------AA---GAGGA-AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAAT-CACCCAAACTCTGGAGAAGAAGA-GGCAAAGGTGAACA-GAAGGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCGGGCGAC---AAAAA-AT-----ACGAAAGGCC--GTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATA-TATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACAA---AAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGACA-GATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAA--ACTA---ACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAGGACTGATTGTAAAGTTA-CC---C---AAGAAAGGCAACCTGA-----------GAGAATTGGA-GGGCATCGC-CTAT-C-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGAC-AGGATC---AGGAAAGGGA-TTGGCAAATAGACAACGGAAAGAATAAGTAGGGCTACCG-TAA---GG---A-AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAGTA-TCAAACAAGATTA--ACG-AGTGGCAGGCAACC---TTTTACCT-CA---A-----ACTTTTGTTGA----TTTTTTGA-AAAAAACGTTTGAACTCAATT--CA-AGAGACAGCTTTGAAACATCATGGACAATCTTAGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTGA-CC-ACCATCTTG-----------------TTCGCACCACCATCACACTCAAAT--CGAAA-GGCATGAAGA------AA----AAGAGAAA-ACAACAACCA--AGGCACGATAC-AGA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGC-GGTTCGA-AACAGATA-CTAAGCTCTG--GAAGAAG--GGCAAA-GTGAGCAGGAAGGAC-GTATTGAGATTAGAAACAATATAAT---GAAGAAAAC-AGATACAGAAGCAG-CCGAAGGGATTCTTGGGAGAGGCAAGAAG-ATTAAAAAAAAAA---C--GTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|17 : ttccattaaagacaccagGAC-AGGATC---AGGAAAGGGA-TTGGCAAA-AGACACGGGAAAGAATAAGTA-GGCTACCG-TAAG--GG---A-AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAGTA-TCAAAC-AAGTTA--ACG-AGTGGCAGGCAACG---CTTTA--C-CT--CA-----AC-TTTGTTGA----TTTT---GAAAAAAACGTTTG-ACTCAATT--CATAGAGACAGCTTTGAACATC-ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|2 : AAGGAAGTTGATAAATATATTCCGGA-TGCACAAGCT-GGAT-TTG--AAGCTGA---C-AGAGGAACGCCATGACAT-GTATT-TAATCTCGGAAATATTA-TCGAAC-AAG-CA--ATATAATGGAATTCCAGCTG-ATACA--T-C---TG-----A--TTCGTAGA----TTGG---T-AAAAGGCATTCG-A
gi|29 : ttggaagatgatcatccaataaattgcgA--T-CAATCA-----AC-TTTATTAA----TATT---G-AAAAGGCGTTTG-ATTCAGTT--GATAGAGtaacgtagatagaaaaatattatggagatgaaagaaaacgttacagaaggtcacaaaacactatgaaatatctgaaaagagtatacaattagtggaaaagcatgtataagaacagccagtgcgcaatcttgaccgggaatgaaacaaacaaatgatttggaataaaacatggattaaggcaaacttgcaatatggctggcttattatttctcttaacaaaagaatggattaagagatgaaagagagaagataagaacaaagggataagatggaatttgacctccaaacttgaggacctggactatgcagacgacaaatcacttctcactagcaacagggtcgcttaaaaataaaaaaatggacaaacttgtaatatatgttgagtctactggactcaagatgtatgtcacaaagacagaagttatgaggatgaaaaccaaaacaacaaccaaggtataaaagcaagatacaaggagatggaaaacgtgactagttatgtgtacatgtacttctaatacggaatgttaaagcattaaagaagtagaagatgaacacatccggataagactaagtctaaccagatctattttcttcatccaactcagcagaaaaacaaaaactatactcctcaaatacaacgtagcatcagttgtggtctattggagtgaaacacgtaagatgaacacaagtagaaaaaaacgcattcaactcatttttacacattgtcaagtgcttaagacaaatactaaaaatccacaggttacacaatgttcgaaacgagataatctgggaaacaacacgaatgaaaacaatacgtgtcattataatgaaaaaaaggtgggcaaggttggagcattttgtaaagatgggcaagaacagatttgcaagaatgtacgttacttggactttttaacacaaaaagtaaaacaaaaccaaaatagacgtggttaagaactaaggaaagagaacaaaatgagattgagtttaaatcataggaagaagcaaccaaagtagcgcaagatagataaaaaagggccttgttcgcgactgtattctccacatgaaaagaaagaaagaaatcaaatcagt
gi|3 : AGTGCTCAGATCAGC-AGACATTGGGAGCG-ACC-ACCATC
gi|3 : ACCACCATCACACTCAAATTGCGAAGCAGCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGC-TATTCGA-AACAGACA-C-AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGAA--AAGC-ACACACAGAGGCAG-CCAAAGAGATTCTCGGGAGGCGCCAGAAG-A------AAGAAA---C--GTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-CAATACTAGGGACAA--GATCA-GAAAGATTGAAAA-CACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAGTT-AAAAGACA-GA-T----CAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACCAA---CTA---ACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAATC-ATCACCGGAAA-GGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCGA-CACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCGAA-TCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAAGACTGATAGTGAA---A-CTACCC---AAGAAAGGCAACCTGAGA---GAAAGTAAGAATTGGAGAGGCATCAC-CC-TTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGAT-AGGATC---AGTAAAGGGA-TTGACAAA-AGACTCAGGAAGGAACAAGCA-GGCTACCG-TAAG--GG---A-AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACATT--TCGAGA-AGGTTA--ACG-AGTGGCAGGCAACG---CTTTA--T-CA--TA-----AC-TTTATTAA----TTTT---G-AAAAGGCGTTTG-ACTCAATT--CATAGAGACAGCTT---------ATGGACAATCTTAACAGCTTAT---GGAGTGC-CCAAAAAacactcaaattgcgaagcagcagaaagaccccacaacgcgcgacgaaacacaacaccaacggctacatacaagacttttgataccatactacatgaatatgataccacaatagctattcgaaacagacacaagctctggaagaaaatgacaaagcgaacagaaaggacgtgtacaggttagaagcaacgcttcggaaaagcacacacagaggcagccaaagagattctcgggaggcgccagaagaaagaaacgtggaacagcaacgaatcttggaaactaatgaagaaagaacagatatcaacaaaagcaatactagggacaagatcagaaagattgaaaacacagctaagagaacaatacagagagaaagatcagaaagttaaaagacagatcagataaacggcagtgggtcgacaacatcgcaacagacgaagaaaaagcagcagcaagccaacatatgaagacactgtaccaactaacaaaaattatatgtaatgaaagaccaagataagtgcatctgtgctagacaaggagagaaaaatcatcaccggaaaggtagagaccataaacaggtggacagaacactttgcagaagttctcaaccggcctaaagcagataattcggtgagtgatgtcgacacaaactaagaagagcagatagaagacatcaactgtgatgaaccaagcatggtcgaatcaaaggggcgctaaagatgctaaagaataacaaagcaccagatattgatggaatacaagcagattttttaaaagcagacatgcggtttacagcgggaaatatgaaccctttggtatgatatggggagatgtggaagctccataaaactagacgaaaagactgatagtgaaactacccaagaaaggcaacctgagagaaagtaagaattggagaggcatcacccttctgccagtggtgagcaaagtgctgggccgcataattgtagataggatcagtaaagggattgacaaaagactcaggaaggaacaagcaggctaccgtaagggaagaggaaccacagaacaaatatttatcctcagaaacatttcgagaaggttaacgagtggcaggcaacgctttatcataactttattaattttgaaaaggcgtttgactcaattcatagagacagcttatggacaatcttaacagcttatggagtgcccaaaaa
gi|4 : agtgctcagatcagcagacattgggagcgGAAAAACGGATTAATA-TGAA---AACT---CCGAAAGAAAAGTGACATAAGCACTAATGGCGGCAATTGGAGAGA-ATTACACC-T-CATACCAACAACTAACAAGAAT--TGGGAGACA-ATTCAT---CAAGGATTGTGAAGAAAG----CTGACAAA-CATCTTAAAAATGAACAAGCT-GGGTTCAG---AGCTGA---G-AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTATTCGAAC-AAGCCATTAGG-AATGGAATTCAAC------TTG--TACA--TCT----GC-TTCGTAGAAGATTTTT------AGAAGTATTCG-A--CAATTA-CATAGAAA
gi|5 : aa-TTGACCAA-CATTTTAGAGAAGAACAGGCA-GGATTCCGAGAAG--GT---C-ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACATCG-TTGAGC-A----A--AC--AGTGGAATGGAACTCCAATCTA--T-AA--TACAGCTGT-TTCATCGA----CTTC---G-AGAGAGCTTTTG-ACAAAGTTAACCTTGATACA-CT----------ATGGAAAATCatattattgaaaatcataaaacactaacggaatccctataagatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|6 : cgTCTTGGGAGACGCAAGAAGGAT-----AAAAAA---CACGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GA-TACTAGGGACAA--TATCA-GAAAGATTAAAAA-CACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGGTT-AAAAGACATGA---GAACAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACCAACTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACATC-ATCACCAGAAA-GGAAGAGACCATGAACTGGTGG-CAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCGA-CACAAACGTA-GAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACACA--GTTTACAGCGGGACAGATT-------------GGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGT--------------------AAAGGCAGCCTGAGA---GAATGTAAGAATTGGAGGGGTAT--------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGAC-AGGATC---AGGACAGGGA-TTGACAAA-AGACTCAGGAATGAACAAACA-GGCTACCG-TAAG--GG---A-AAAGGAACCACTGAACAA-ATATT-TATCCTCAGAatgggaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|9 : AGAGATGAACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATAC-TGGAGC-AGGTCA--TAG-AACGGAA
20 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|8 ): ACGGTTGACCAAGCATCTTAGAGAAGATACAGGCAGGATCCGAGATAGGAGTAAACAAGCAGATTTTCACACTCAGACTCGTGGAGCAAAGAGTGAATGGAAACCAATCTAGTACATCTGATTTCATCGACTTCGAGAAAGCATTTGAAGTGTTCATGAGACCAGCTTATGAAAATCATGGGAAAAATATGGCATTTCCAGGAAACTTCGTCAGAATCATTAAGTGCATGTTATACACTTACAACGAATGTGTTGTAACATCAAACGGAAACATCAGAACTAGTTTGAAATCAAATCGGAGTCAAACAGGCTGCACGTCTGACTTTCTTGTTTTAATGGGTCGTAGTCTGGATAATAAAACTCAATAAGCATGAGACAACACAGGAATTCAGATGAAATTTCACATCGAAACTAGATGACTTAACTGATGCTGACGACATCGCATTGATCTCAGTAAAGGCAACAACTAAAGAAAGTTAACTGATGTAAACGTAGATATCCAGTCCGATGGCCTACAAAATTAAACACC
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA
Alignments
lowQualScore : 1 2 1 777777777777777777 11 1 555555555555 11 1 1 222222 2 1 1 1 1 1 111 111 22 111 11 222 1 1 22222222 222222 1 1 111 1 111 1111 111 1 1 1 1 4444 1 1 1 3333333 11 1 1 1 1 1 111 11 1 33 5555555555555555555555 55555555555555555 22222222222 33333333333333333333 1 111 11111 1 11 111111111 11111 44444444444444444444444444444444 1111 11111 11 5555555555 222 1
lowQualScore : 6 3 0 3 3 333333333333333333 88 3 000000000000 6 6 7 55 1 3 2 666666 7 6 3 3 3 3 3 555 222 00 444 6 33 555 6 1 3 1 3 2 3 99999999 111111 1 3 0 0 444 0 111 6 8888 999 3 3 999 3 3 2222 3 0 3 7 0 3 6 9999999 1 1 88 7 3 3 6 0 3 3 3 000 7 6 7 7 3 0 00 1 3 66 1111111111111111111111 6 2 33333333333333333 2 55555555555 2 6 88888888888888888888 33 0 2 11 3 0 2 6 8 444 5 11111 1 4 4 1 3 44 555555555 2 3 4 4 1 88 5 44444 66 0 5 666 99999999999999999999999999999999 5 2 1111 22222 4 2 5 11 77 5 1 6 88 7777777777 333 3
lowQualScore : . . . . . .................. .. . ............ . . . .. . . . ...... . . . . . . . ... ... .. ... . .. ... . . . . . . . ........ ...... . . . . ... . ... . .... ... . . ... . . .... . . . . . . . ....... . . .. . . . . . . . . ... . . . . . . .. . . .. ...................... . . ................. . ........... . . .................... .. . . .. . . . . . ... . ..... . . . . . .. ......... . . . . . .. . ..... .. . . ... ................................ . . .... ..... . . . .. .. . . . .. .......... ... .
lowQualScore : 7 3 7 7 3 555555555555555555 33 3 333333333333 7 7 3 77 0 3 0 777777 3 7 3 3 3 3 3 333 333 77 000 7 33 000 7 0 3 0 3 5 0 22222222 222222 0 2 0 0 000 0 000 7 7777 333 3 3 333 3 3 3333 3 7 3 3 7 3 7 0000000 0 0 33 3 3 3 7 7 3 3 3 000 3 7 3 3 7 7 33 0 3 77 3333333333333333333333 7 5 22222222222222222 0 00000000000 5 5 00000000000000000000 55 0 5 55 2 2 0 5 0 000 0 66666 0 4 4 0 1 44 111111111 6 6 4 4 9 99 0 88888 99 2 0 777 99999999999999999999999999999999 0 2 1111 00000 2 0 0 44 99 7 4 7 88 8888888888 333 3
consensus : AGTGCTCAGATCAGC-AGACATTGGGAGCG-ACC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA-------C-GNTTTA--T--CA--T-A-----AC-TTCGT---TGATTTT---G-AAAAGGCGTTTG-ACTCA--ATT-CATAGAGA-CAGCTT-TGA-AAAT-C---ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( family-2914 ) : AGTGCTCAGATCAGC-AGACATTGGGAGCGAACC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAC--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AANG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA-------C-NNTTTA--T--CA--T-A-----AC-TTCGT---TGATTTT---G-AAAAGGCGTTCG-ACTCA--ATT-CATAGAGA-CAGCTT-TGA-A----C---ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTC-------------CACACTCACAT--TGAAG-GGCATGAAGA------AA---GAGGA-AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAATCACCCAAACTCTGGAGAAGAAGA-GGCAAAGGTGAACA-GAAGGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCGGGCGAC---AAAAA-AT-----ACGAAAGGCC--GTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATA-TATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACAA---AAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGACA-GATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAA--AC---TAACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAGGACTGATTGTAAAGTTA-CC---C---AAGAAAGGCAACCTGA-----------GAGAATTGGA-GGGCATCGC-CTAT-C-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGAC-AGGATC---AGGAAAGGGA-TTGGCAAATAGA-CAACGGAAAGA-ATAAGTAGGGCTACCG-TAA---GG---A-AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAGTA-TCAAACAAG-ATTA--ACG-AGTGGCA-GGCAA-------C-CTTTTACCT--CA----A-----ACTTTTGT---TGATTTTTTGA-AAAAAACGTTTGAACTCA--ATT-CA-AGAGA-CAGCTT-TGA-AACATC---ATGGACAATCTTAGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTG-ACC-ACCATCTTG-------------TTCGCACCACCATCACACTCAAAT--CGAAA-GGCATGAAGA------AA----AAGAGAAA-ACAACAACCA--AGGCACGATAC-AGA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGC-GGTTCGAAACAGATA-CTAAGCTCTG--GAAGAAG--GGCAAA-GTGAGCAGGAAGGAC-GTATTGAGATTAGAAACAATATAAT---GAAGAAAAC-AGATACAGAAGCAG-CCGAAGGGATTCTTGGGAGAGGCAAGAAG-ATTAAAAAAAAAA---C--GTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|17 : ttccattaaagacaccagGAC-AGGATC---AGGAAAGGGA-TTGGCAAA-AGA-CACGGGAAAGA-ATAAGTA-GGCTACCG-TAAG--GG---A-AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAGTA-TCAAAC-AA-GTTA--ACG-AGTGGCA-GGCAA-------C-GCTTTA--C--CT--C-A-----AC-TTTGT---TGATTTT---GAAAAAAACGTTTG-ACTCA--ATT-CATAGAGA-CAGCTT-TGA-ACAT-C---ATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|2 : AAGGAAGTTGATAAATATA-TTCCGGA-TGC-ACAAGCT-GGAT-TTG--AAGCTGA---C-AGAGGAACGCCATGACAT-GTATT-TAATCTCGGAAATATTA-TCGAAC-AA-G-CA--ATATAATGGAATTCCAG-------CTGATACA--T--C---T-G-----A--TTCGT---AGATTGG---T-AAAAGGCATTCG-A
gi|29 : ttggaagatgatcatccaataaattgcgA--T--CAATC-A-----AC-TTTAT---TAATATT---G-AAAAGGCGTTTG-ATTCA--GTT-GATAGAGtaacgtagatagaaaaatattatggagatgaaagaaaacgttacagaaggtcacaaaacactatgaaatatctgaaaagagtatacaattagtggaaaagcatgtataagaacagccagtgcgcaatcttgaccgggaatgaaacaaacaaatgatttggaataaaacatggattaaggcaaacttgcaatatggctggcttattatttctcttaacaaaagaatggattaagagatgaaagagagaagataagaacaaagggataagatggaatttgacctccaaacttgaggacctggactatgcagacgacaaatcacttctcactagcaacagggtcgcttaaaaataaaaaaatggacaaacttgtaatatatgttgagtctactggactcaagatgtatgtcacaaagacagaagttatgaggatgaaaaccaaaacaacaaccaaggtataaaagcaagatacaaggagatggaaaacgtgactagttatgtgtacatgtacttctaatacggaatgttaaagcattaaagaagtagaagatgaacacatccggataagactaagtctaaccagatctattttcttcatccaactcagcagaaaaacaaaaactatactcctcaaatacaacgtagcatcagttgtggtctattggagtgaaacacgtaagatgaacacaagtagaaaaaaacgcattcaactcatttttacacattgtcaagtgcttaagacaaatactaaaaatccacaggttacacaatgttcgaaacgagataatctgggaaacaacacgaatgaaaacaatacgtgtcattataatgaaaaaaaggtgggcaaggttggagcattttgtaaagatgggcaagaacagatttgcaagaatgtacgttacttggactttttaacacaaaaagtaaaacaaaaccaaaatagacgtggttaagaactaaggaaagagaacaaaatgagattgagtttaaatcataggaagaagcaaccaaagtagcgcaagatagataaaaaagggccttgttcgcgactgtattctccacatgaaaagaaagaaagaaatcaaatcagt
gi|3 : AGTGCTCAGATCAGC-AGACATTGGGAGCG-ACC-ACCATC
gi|3 : ACCACCATCACACTCAAATTGCGAAGCAGCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGC-TATTCGAAACAGACA-C-AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGAA--AAGC-ACACACAGAGGCAG-CCAAAGAGATTCTCGGGAGGCGCCAGAAG-A------AAGAAA---C--GTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-CAATACTAGGGACAA--GATC-AGAAAGATT-GAAAACACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAG-TTAAAAGACA-GAT-----CAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACCAA---C---TAACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAAT-CATCACCGG-AAAGGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCG-ACACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCGAA-TCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAAGACTGATAGTGAA---A-CTACCC---AAGAAAGGCAACCTGAGAG--AAAG-TAAGAATTGGAGAGGCATCAC-CC-TTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGAT-AGGATC---AGTAAAGGGA-TTGACAAA-AGA-CTCAGGAAGGA-ACAAGCA-GGCTACCG-TAAG--GG---A-AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACATT--TCGAGA-AG-GTTA--ACG-AGTGGCA-GGCAA-------C-GCTTTA--T--CA--T-A-----AC-TTTAT---TAATTTT---G-AAAAGGCGTTTG-ACTCA--ATT-CATAGAGA-CAGCTT--------------ATGGACAATCTTAACAGCTTAT---GGAGTGC-CCAAAAAacactcaaattgcgaagcagcagaaagaccccacaacgcgcgacgaaacacaacaccaacggctacatacaagacttttgataccatactacatgaatatgataccacaatagctattcgaaacagacacaagctctggaagaaaatgacaaagcgaacagaaaggacgtgtacaggttagaagcaacgcttcggaaaagcacacacagaggcagccaaagagattctcgggaggcgccagaagaaagaaacgtggaacagcaacgaatcttggaaactaatgaagaaagaacagatatcaacaaaagcaatactagggacaagatcagaaagattgaaaacacagctaagagaacaatacagagagaaagatcagaaagttaaaagacagatcagataaacggcagtgggtcgacaacatcgcaacagacgaagaaaaagcagcagcaagccaacatatgaagacactgtaccaactaacaaaaattatatgtaatgaaagaccaagataagtgcatctgtgctagacaaggagagaaaaatcatcaccggaaaggtagagaccataaacaggtggacagaacactttgcagaagttctcaaccggcctaaagcagataattcggtgagtgatgtcgacacaaactaagaagagcagatagaagacatcaactgtgatgaaccaagcatggtcgaatcaaaggggcgctaaagatgctaaagaataacaaagcaccagatattgatggaatacaagcagattttttaaaagcagacatgcggtttacagcgggaaatatgaaccctttggtatgatatggggagatgtggaagctccataaaactagacgaaaagactgatagtgaaactacccaagaaaggcaacctgagagaaagtaagaattggagaggcatcacccttctgccagtggtgagcaaagtgctgggccgcataattgtagataggatcagtaaagggattgacaaaagactcaggaaggaacaagcaggctaccgtaagggaagaggaaccacagaacaaatatttatcctcagaaacatttcgagaaggttaacgagtggcaggcaacgctttatcataactttattaattttgaaaaggcgtttgactcaattcatagagacagcttatggacaatcttaacagcttatggagtgcccaaaaa
gi|4 : agtgctcagatcagcagacattgggagcgGAAAAACGGATTAATA-TGAA---AACT---CCGAAAGAAAAGTGACATAAGCACTAATGGCGGCAATTGGAGAGA-ATTACACC-T-CATACCAACAACTAACAAGAAT--TGGGAGACA-ATTCAT---CAAGGATTGTGAAGAAAG----CTGACAAA-CAT-CTTAAAAATGA-ACAAGCT-GGGTTCAG---AGCTGA---G-AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTATTCGAAC-AA-GCCATTAGG-AATGGAA-TTCAA-------C----TTG--TA-CA--T-CT----GC-TTCGTAGAAGATTTT---T-AGAA-GTATTCG-A--CA--ATTACATAGAAA-
gi|5 : aa-TTGACCAA-CAT-TTTAGAGAAGA-ACAGGCA-GGATTCCGAGAAG--GT---C-ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACATCG-TTGAGC-A-----A--AC--AGTGGAA-TGGAACTC----C-AATCTA--T--AA--T-ACAGCTGT-TTCAT---CGACTTC---G-AGAGAGCTTTTG-AC------------AAAGT-TAACCT-TGATA----CACTATGGAAAATCatattattgaaaatcataaaacactaacggaatccctataagatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|6 : cgTCTTGGGAGACGCAAGAAGGAT-----AAAAAA---CACGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GA-TACTAGGGACAA--TATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGG-TTAAAAGACATGA---GAACAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACCAACTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACAT-CATCACCAG-AAAGGAAGAGACCATGAACTGGT-GGCAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCG-ACACAAACGT-AGAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACACA--GTTTACAGCGGGACAGATT-------------GGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGT--------------------AAAGGCAGCCTGAGAG--AATG-TAAGAATTGGAGGGGTAT--------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGAC-AGGATC---AGGACAGGGA-TTGACAAA-AGA-CTCAGGAATGA-ACAAACA-GGCTACCG-TAAG--GG---A-AAAGGAACCACTGAACAA-ATATT-TATCCTCAGAatgggaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|8 : GG-TTGACCAA-GCATCTTAGAGAAGATACAGGCA-GGAT-CCG---AG--AT---A-GGAGTAA--ACA-AGCAG-ATTTT-CACACTCAGA--C-TCG-TGGAGC-AAAG--A--GTG-AATGGAA-ACCAATCTAGTAC-ATCTGA--TTTCA--TCG-----AC-TTC---------------G-AGAAAGCATTTG-A---AGTGTT-CAT-GAGACCAGCTTATGA-AAAT-C---ATGG
gi|9 : acAGAGATGA-ACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATAC-TGGAGC-AG-GTCA--TAG-AACGGAA-gaaaaatatggcatttccaggaaacttcgtcagaatcattaagtgcatgttatacacttacaacgaatgtgttgtaacatcaaacggaaacatcagaactagtttgaaatcaaatcggagtcaaacaggctgcacgtctgactttcttgttttaatgggtcgtagtctggataataaaactcaataagcatgagacaacacaggaattcagatgaaatttcacatcgaaactagatgacttaactgatgctgacgacatcgcattgatctcagtaaaggcaacaactaaagaaagttaactgatgtaaacgtagatatccagtccgatggcctacaaaattaaacacc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA
Alignments
lowQualScore : 1 1 1 777777777777777777 11 1 555555555555 11 1 1 222222 2 1 1 1 1 1 111 111 22 111 11 222 1 1 22222222 222222 1 1 111 1 111 1111 111 1 1 1 1 3333 1 1 1 3333333 11 1 1 1 1 1 111 11 1 33 5555555555555555555555 55555555555555555 22222222222 33333333333333333333 1 111 11111 1 11 111111111 11111 333333333333333333333333333 1111 11111 11 222 1
lowQualScore : 6 3 0 3 3 333333333333333333 88 3 000000000000 6 6 7 55 1 3 2 666666 7 6 3 3 3 3 3 555 222 00 444 6 33 555 6 1 3 1 3 2 3 99999999 111111 1 3 0 0 444 0 111 6 8888 999 3 3 999 3 3 2222 3 0 3 7 0 3 6 9999999 1 1 88 7 3 3 6 0 3 3 3 000 7 6 7 7 3 0 00 1 3 66 1111111111111111111111 6 2 33333333333333333 2 44444444444 2 6 88888888888888888888 33 0 2 11 3 0 2 6 8 444 5 11111 1 4 4 1 3 44 555555555 2 3 4 4 1 88 5 44444 66 0 5 666 444444444444444444444444444 55 0000 22222 4 5 88 77 33 1 5 6 2 6 99 6 333 3
lowQualScore : . . . . . .................. .. . ............ . . . .. . . . ...... . . . . . . . ... ... .. ... . .. ... . . . . . . . ........ ...... . . . . ... . ... . .... ... . . ... . . .... . . . . . . . ....... . . .. . . . . . . . . ... . . . . . . .. . . .. ...................... . . ................. . ........... . . .................... .. . . .. . . . . . ... . ..... . . . . . .. ......... . . . . . .. . ..... .. . . ... ........................... .. .... ..... . . .. .. .. . . . . . .. . ... .
lowQualScore : 7 3 7 3 3 555555555555555555 33 3 333333333333 7 7 3 77 0 3 0 777777 3 7 3 3 3 3 3 333 333 77 000 7 33 000 7 0 3 0 3 5 0 22222222 222222 0 2 0 0 000 0 000 7 7777 333 3 3 333 3 3 3333 3 7 3 3 7 3 7 0000000 0 0 33 3 3 3 7 7 3 3 3 000 3 7 3 3 7 7 33 0 3 77 3333333333333333333333 7 5 22222222222222222 0 00000000000 5 5 00000000000000000000 55 0 5 55 2 2 0 5 0 000 0 66666 0 4 4 0 1 44 111111111 6 6 4 4 9 99 0 88888 99 2 0 777 777777777777777777777777777 22 0000 00000 2 0 11 99 66 7 7 7 5 7 88 7 333 3
consensus : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA---C--GNTTTA--T-CA--TA-----AC-TTCGT---CGATTTT---G-AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( family-2914 ) : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA---C--GNTTTA--T-CA--TA-----AC-TTCGT---TGATTTT---G-AAAAGGCGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTC-------------CACACTCACAT--TGAAG-GGCATGAAGA------AA---GAGGA-AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAATCACCCAAACTCTGGAGAAGAAGA-GGCAAAGGTGAACA-GAAGGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCGGGCGAC---AAAAA-AT-----ACGAAAGGCC--GTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATA-TATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACAA---AAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGACA-GATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAA--AC---TAACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAGGACTGATTGTAAAGTTA-CC---C---AAGAAAGGCAACCTGA-----------GAGAATTGGA-GGGCATCGC-CTAT-C-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGAC-AGGATC---AGGAAAGGGA-TTGGCAAATAGA-CAACGGAAAGA-ATAAGTAGGGCTACCG-TAA---GG---A-AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAGTA-TCAAACAAG-ATTA--ACG-AGTGGCA-GGCAA---C--CTTTTACCT-CA---A-----ACTTTTGT---TGATTTTTTGA-AAAAAACGTTTGAACTCAAT--T--CA-AG-AGAC-AGCT-T-TGAAACATCATGGACAATCTTAGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTGA-CC-ACCATCTTG-------------TTCGCACCACCATCACACTCAAAT--CGAAA-GGCATGAAGA------AA----AAGAGAAA-ACAACAACCA--AGGCACGATAC-AGA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGC-GGTTCGAAACAGATA-CTAAGCTCTG--GAAGAAG--GGCAAA-GTGAGCAGGAAGGAC-GTATTGAGATTAGAAACAATATAAT---GAAGAAAAC-AGATACAGAAGCAG-CCGAAGGGATTCTTGGGAGAGGCAAGAAG-ATTAAAAAAAAAA---C--GTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|17 : ttccattaaagacaccagGAC-AGGATC---AGGAAAGGGA-TTGGCAAA-AGA-CACGGGAAAGA-ATAAGTA-GGCTACCG-TAAG--GG---A-AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAGTA-TCAAAC-AA-GTTA--ACG-AGTGGCA-GGCAA---C--GCTTTA--C-CT--CA-----AC-TTTGT---TGATTTT---GAAAAAAACGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T-TGAAC-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|2 : AAGGAAGTTGATAAATATA-TTCCGGA-TGC-ACAAGCT-GGAT-TTG--AAGCTGA---C-AGAGGAACGCCATGACAT-GTATT-TAATCTCGGAAATATTA-TCGAAC-AA-G-CA--ATATAATGGAATTCCAG---CT-GATACA--T-C---TG-----A--TTCGT---AGATTGG---T-AAAAGGCATTCG-A
gi|29 : ttggaagatgatcatccaataaattgcgA--T-CAATCA-----AC-TTTAT---TAATATT---G-AAAAGGCGTTTG-ATTCAGT--T--GATAG-AGtaacgtagatagaaaaatattatggagatgaaagaaaacgttacagaaggtcacaaaacactatgaaatatctgaaaagagtatacaattagtggaaaagcatgtataagaacagccagtgcgcaatcttgaccgggaatgaaacaaacaaatgatttggaataaaacatggattaaggcaaacttgcaatatggctggcttattatttctcttaacaaaagaatggattaagagatgaaagagagaagataagaacaaagggataagatggaatttgacctccaaacttgaggacctggactatgcagacgacaaatcacttctcactagcaacagggtcgcttaaaaataaaaaaatggacaaacttgtaatatatgttgagtctactggactcaagatgtatgtcacaaagacagaagttatgaggatgaaaaccaaaacaacaaccaaggtataaaagcaagatacaaggagatggaaaacgtgactagttatgtgtacatgtacttctaatacggaatgttaaagcattaaagaagtagaagatgaacacatccggataagactaagtctaaccagatctattttcttcatccaactcagcagaaaaacaaaaactatactcctcaaatacaacgtagcatcagttgtggtctattggagtgaaacacgtaagatgaacacaagtagaaaaaaacgcattcaactcatttttacacattgtcaagtgcttaagacaaatactaaaaatccacaggttacacaatgttcgaaacgagataatctgggaaacaacacgaatgaaaacaatacgtgtcattataatgaaaaaaaggtgggcaaggttggagcattttgtaaagatgggcaagaacagatttgcaagaatgtacgttacttggactttttaacacaaaaagtaaaacaaaaccaaaatagacgtggttaagaactaaggaaagagaacaaaatgagattgagtttaaatcataggaagaagcaaccaaagtagcgcaagatagataaaaaagggccttgttcgcgactgtattctccacatgaaaagaaagaaagaaatcaaatcagt
gi|3 : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATC
gi|3 : ACCACCATCACACTCAAATTGCGAAGCAGCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGC-TATTCGAAACAGACA-C-AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGAA--AAGC-ACACACAGAGGCAG-CCAAAGAGATTCTCGGGAGGCGCCAGAAG-A------AAGAAA---C--GTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-CAATACTAGGGACAA--GATC-AGAAAGATT-GAAAACACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAG-TTAAAAGACA-GAT-----CAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACCAA---C---TAACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAAT-CATCACCGG-AAAGGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCG-ACACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCGAA-TCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAAGACTGATAGTGAA---A-CTACCC---AAGAAAGGCAACCTGAGAG--AAAG-TAAGAATTGGAGAGGCATCAC-CC-TTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGAT-AGGATC---AGTAAAGGGA-TTGACAAA-AGA-CTCAGGAAGGA-ACAAGCA-GGCTACCG-TAAG--GG---A-AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACATT--TCGAGA-AG-GTTA--ACG-AGTGGCA-GGCAA---C--GCTTTA--T-CA--TA-----AC-TTTAT---TAATTTT---G-AAAAGGCGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T----------ATGGACAATCTTAACAGCTTAT---GGAGTGC-CCAAAAAacactcaaattgcgaagcagcagaaagaccccacaacgcgcgacgaaacacaacaccaacggctacatacaagacttttgataccatactacatgaatatgataccacaatagctattcgaaacagacacaagctctggaagaaaatgacaaagcgaacagaaaggacgtgtacaggttagaagcaacgcttcggaaaagcacacacagaggcagccaaagagattctcgggaggcgccagaagaaagaaacgtggaacagcaacgaatcttggaaactaatgaagaaagaacagatatcaacaaaagcaatactagggacaagatcagaaagattgaaaacacagctaagagaacaatacagagagaaagatcagaaagttaaaagacagatcagataaacggcagtgggtcgacaacatcgcaacagacgaagaaaaagcagcagcaagccaacatatgaagacactgtaccaactaacaaaaattatatgtaatgaaagaccaagataagtgcatctgtgctagacaaggagagaaaaatcatcaccggaaaggtagagaccataaacaggtggacagaacactttgcagaagttctcaaccggcctaaagcagataattcggtgagtgatgtcgacacaaactaagaagagcagatagaagacatcaactgtgatgaaccaagcatggtcgaatcaaaggggcgctaaagatgctaaagaataacaaagcaccagatattgatggaatacaagcagattttttaaaagcagacatgcggtttacagcgggaaatatgaaccctttggtatgatatggggagatgtggaagctccataaaactagacgaaaagactgatagtgaaactacccaagaaaggcaacctgagagaaagtaagaattggagaggcatcacccttctgccagtggtgagcaaagtgctgggccgcataattgtagataggatcagtaaagggattgacaaaagactcaggaaggaacaagcaggctaccgtaagggaagaggaaccacagaacaaatatttatcctcagaaacatttcgagaaggttaacgagtggcaggcaacgctttatcataactttattaattttgaaaaggcgtttgactcaattcatagagacagcttatggacaatcttaacagcttatggagtgcccaaaaa
gi|4 : agtgctcagatcagcagacattgggagcgGAAAAACGGATTAATA-TGAA---AACT---CCGAAAGAAAAGTGACATAAGCACTAATGGCGGCAATTGGAGAGA-ATTACACC-T-CATACCAACAACTAACAAGAAT--TGGGAGACA-ATTCAT---CAAGGATTGTGAAGAAAG----CTGACAAA-CAT-CTTAAAAATGA-ACAAGCT-GGGTTCAG---AGCTGA---G-AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTATTCGAAC-AA-GCCATTAGG-AATGGAA-TTCAA---C-----TTG--TACA--TCT----GC-TTCGTAGAAGATTTT---T-AGAA-GTATTCG-A--CAAT--TA-CATAGAAAAT-ATTA-T-TGAAA-ATCAT
gi|5 : aa-TTGACCAA-CAT-TTTAGAGAAGA-ACAGGCA-GGATTCCGAGAAG--GT---C-ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACATCG-TTGAGC-A-----A--AC--AGTGGAA-TGGAACTCC--AATCTA--T-AA--TACAGCTGT-TTCAT---CGACTTC---G-AGAGAGCTTTTG-ACAAAGT--TAACCTTG-ATAC-A-CTAT-GGAAA-ATCATGGaaaacactaacggaatccctataagatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|6 : cgTCTTGGGAGACGCAAGAAGGAT-----AAAAAA---CACGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GA-TACTAGGGACAA--TATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGG-TTAAAAGACATGA---GAACAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACCAACTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACAT-CATCACCAG-AAAGGAAGAGACCATGAACTGGT-GGCAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCG-ACACAAACGT-AGAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACACA--GTTTACAGCGGGACAGATT-------------GGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGT--------------------AAAGGCAGCCTGAGAG--AATG-TAAGAATTGGAGGGGTAT--------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGAC-AGGATC---AGGACAGGGA-TTGACAAA-AGA-CTCAGGAATGA-ACAAACA-GGCTACCG-TAAG--GG---A-AAAGGAACCACTGAACAA-ATATT-TATCCTCAGAgaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|8 : GG-TTGACCAA-GCATCTTAGAGAAGATACAGGCA-GGAT-CCG---AG--AT---A-GGAGTAA--ACA-AGCAG-ATTTT-CACACTCAGA--C-TCG-TGGAGC-AAAG--A--GTG-AATGGAA-ACCAA---TCTAGTACA--T-C---TG-----AT-TTCAT---CGACTTC---G-AGAAAGCATTTG-A---AGTGTT--CAT-G-AGACCAGCT-TATGAAA-ATCATGG
gi|9 : acAGAGATGA-ACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATAC-TGGAGC-AG-GTCA--TAG-AACGGAA-gaaaaatatggcatttccaggaaacttcgtcagaatcattaagtgcatgttatacacttacaacgaatgtgttgtaacatcaaacggaaacatcagaactagtttgaaatcaaatcggagtcaaacaggctgcacgtctgactttcttgttttaatgggtcgtagtctggataataaaactcaataagcatgagacaacacaggaattcagatgaaatttcacatcgaaactagatgacttaactgatgctgacgacatcgcattgatctcagtaaaggcaacaactaaagaaagttaactgatgtaaacgtagatatccagtccgatggcctacaaaattaaacacc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA
Alignments
lowQualScore : 1 1 1 777777777777777777 11 1 555555555555 11 1 1 222222 2 1 1 1 1 1 111 111 22 111 11 222 1 1 22222222 222222 1 1 111 1 111 1111 111 1 1 1 1 3333 1 1 1 3333333 11 1 1 1 1 1 111 11 1 33 5555555555555555555555 55555555555555555 22222222222 33333333333333333333 1 111 11111 1 11 111111111 11111 333333333333333333333333333 1111 11111 11 222 1
lowQualScore : 6 3 0 3 3 333333333333333333 88 3 000000000000 6 6 7 55 1 3 2 666666 7 6 3 3 3 3 3 555 222 00 444 6 33 555 6 1 3 1 3 2 3 99999999 111111 1 3 0 0 444 0 111 6 8888 999 3 3 999 3 3 2222 3 0 3 7 0 3 6 9999999 1 1 88 7 3 3 6 0 3 3 3 000 7 6 7 7 3 0 00 1 3 66 1111111111111111111111 6 2 33333333333333333 2 44444444444 2 6 88888888888888888888 33 0 2 11 3 0 2 6 8 444 5 11111 1 4 4 1 3 44 555555555 2 3 4 4 1 88 5 44444 66 0 5 666 444444444444444444444444444 55 3333 22222 4 5 88 77 33 1 5 6 2 6 99 6 333 3
lowQualScore : . . . . . .................. .. . ............ . . . .. . . . ...... . . . . . . . ... ... .. ... . .. ... . . . . . . . ........ ...... . . . . ... . ... . .... ... . . ... . . .... . . . . . . . ....... . . .. . . . . . . . . ... . . . . . . .. . . .. ...................... . . ................. . ........... . . .................... .. . . .. . . . . . ... . ..... . . . . . .. ......... . . . . . .. . ..... .. . . ... ........................... .. .... ..... . . .. .. .. . . . . . .. . ... .
lowQualScore : 7 3 7 3 3 555555555555555555 33 3 333333333333 7 7 3 77 0 3 0 777777 3 7 3 3 3 3 3 333 333 77 000 7 33 000 7 0 3 0 3 5 0 22222222 222222 0 2 0 0 000 0 000 7 7777 333 3 3 333 3 3 3333 3 7 3 3 7 3 7 0000000 0 0 33 3 3 3 7 7 3 3 3 000 3 7 3 3 7 7 33 0 3 77 3333333333333333333333 7 5 22222222222222222 0 00000000000 5 5 00000000000000000000 55 0 5 55 2 2 0 5 0 000 0 66666 0 4 4 0 1 44 111111111 6 6 4 4 9 99 0 88888 99 2 0 777 777777777777777777777777777 22 0000 00000 2 0 11 99 66 7 7 7 5 7 88 7 333 3
consensus : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA---C--GNTTTA--T-CA--TA-----AC-TTCGT---CGATTTT---G-AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( family-2914 ) : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA---C--GNTTTA--T-CA--TA-----AC-TTCGT---CGATTTT---G-AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTC-------------CACACTCACAT--TGAAG-GGCATGAAGA------AA---GAGGA-AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAATCACCCAAACTCTGGAGAAGAAGA-GGCAAAGGTGAACA-GAAGGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCGGGCGAC---AAAAA-AT-----ACGAAAGGCC--GTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATA-TATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACAA---AAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGACA-GATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAA--AC---TAACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAGGACTGATTGTAAAGTTA-CC---C---AAGAAAGGCAACCTGA-----------GAGAATTGGA-GGGCATCGC-CTAT-C-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGAC-AGGATC---AGGAAAGGGA-TTGGCAAATAGA-CAACGGAAAGA-ATAAGTAGGGCTACCG-TAA---GG---A-AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAGTA-TCAAACAAG-ATTA--ACG-AGTGGCA-GGCAA---C--CTTTTACCT-CA---A-----ACTTTTGT---TGATTTTTTGA-AAAAAACGTTTGAACTCAAT--T--CA-AG-AGAC-AGCT-T-TGAAACATCATGGACAATCTTAGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTGA-CC-ACCATCTTG-------------TTCGCACCACCATCACACTCAAAT--CGAAA-GGCATGAAGA------AA----AAGAGAAA-ACAACAACCA--AGGCACGATAC-AGA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGC-GGTTCGAAACAGATA-CTAAGCTCTG--GAAGAAG--GGCAAA-GTGAGCAGGAAGGAC-GTATTGAGATTAGAAACAATATAAT---GAAGAAAAC-AGATACAGAAGCAG-CCGAAGGGATTCTTGGGAGAGGCAAGAAG-ATTAAAAAAAAAA---C--GTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|17 : ttccattaaagacaccagGAC-AGGATC---AGGAAAGGGA-TTGGCAAA-AGA-CACGGGAAAGA-ATAAGTA-GGCTACCG-TAAG--GG---A-AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAGTA-TCAAAC-AA-GTTA--ACG-AGTGGCA-GGCAA---C--GCTTTA--C-CT--CA-----AC-TTTGT---TGATTTT---GAAAAAAACGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T-TGAAC-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|2 : AAGGAAGTTGATAAATATA-TTCCGGA-TGC-ACAAGCT-GGAT-TTG--AAGCTGA---C-AGAGGAACGCCATGACAT-GTATT-TAATCTCGGAAATATTA-TCGAAC-AA-G-CA--ATATAATGGAATTCCAG---CT-GATACA--T-C---TG-----A--TTCGT---AGATTGG---T-AAAAGGCATTCG-A
gi|29 : ttggaagatgatcatccaataaattgcgA--T-CAATCA-----AC-TTTAT---TAATATT---G-AAAAGGCGTTTG-ATTCAGT--T--GATAG-AGtaacgtagatagaaaaatattatggagatgaaagaaaacgttacagaaggtcacaaaacactatgaaatatctgaaaagagtatacaattagtggaaaagcatgtataagaacagccagtgcgcaatcttgaccgggaatgaaacaaacaaatgatttggaataaaacatggattaaggcaaacttgcaatatggctggcttattatttctcttaacaaaagaatggattaagagatgaaagagagaagataagaacaaagggataagatggaatttgacctccaaacttgaggacctggactatgcagacgacaaatcacttctcactagcaacagggtcgcttaaaaataaaaaaatggacaaacttgtaatatatgttgagtctactggactcaagatgtatgtcacaaagacagaagttatgaggatgaaaaccaaaacaacaaccaaggtataaaagcaagatacaaggagatggaaaacgtgactagttatgtgtacatgtacttctaatacggaatgttaaagcattaaagaagtagaagatgaacacatccggataagactaagtctaaccagatctattttcttcatccaactcagcagaaaaacaaaaactatactcctcaaatacaacgtagcatcagttgtggtctattggagtgaaacacgtaagatgaacacaagtagaaaaaaacgcattcaactcatttttacacattgtcaagtgcttaagacaaatactaaaaatccacaggttacacaatgttcgaaacgagataatctgggaaacaacacgaatgaaaacaatacgtgtcattataatgaaaaaaaggtgggcaaggttggagcattttgtaaagatgggcaagaacagatttgcaagaatgtacgttacttggactttttaacacaaaaagtaaaacaaaaccaaaatagacgtggttaagaactaaggaaagagaacaaaatgagattgagtttaaatcataggaagaagcaaccaaagtagcgcaagatagataaaaaagggccttgttcgcgactgtattctccacatgaaaagaaagaaagaaatcaaatcagt
gi|3 : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATC
gi|3 : ACCACCATCACACTCAAATTGCGAAGCAGCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGC-TATTCGAAACAGACA-C-AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGAA--AAGC-ACACACAGAGGCAG-CCAAAGAGATTCTCGGGAGGCGCCAGAAG-A------AAGAAA---C--GTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-CAATACTAGGGACAA--GATC-AGAAAGATT-GAAAACACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAG-TTAAAAGACA-GAT-----CAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACCAA---C---TAACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAAT-CATCACCGG-AAAGGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCG-ACACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCGAA-TCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAAGACTGATAGTGAA---A-CTACCC---AAGAAAGGCAACCTGAGAG--AAAG-TAAGAATTGGAGAGGCATCAC-CC-TTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGAT-AGGATC---AGTAAAGGGA-TTGACAAA-AGA-CTCAGGAAGGA-ACAAGCA-GGCTACCG-TAAG--GG---A-AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACATT--TCGAGA-AG-GTTA--ACG-AGTGGCA-GGCAA---C--GCTTTA--T-CA--TA-----AC-TTTAT---TAATTTT---G-AAAAGGCGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T----------ATGGACAATCTTAACAGCTTAT---GGAGTGC-CCAAAAAacactcaaattgcgaagcagcagaaagaccccacaacgcgcgacgaaacacaacaccaacggctacatacaagacttttgataccatactacatgaatatgataccacaatagctattcgaaacagacacaagctctggaagaaaatgacaaagcgaacagaaaggacgtgtacaggttagaagcaacgcttcggaaaagcacacacagaggcagccaaagagattctcgggaggcgccagaagaaagaaacgtggaacagcaacgaatcttggaaactaatgaagaaagaacagatatcaacaaaagcaatactagggacaagatcagaaagattgaaaacacagctaagagaacaatacagagagaaagatcagaaagttaaaagacagatcagataaacggcagtgggtcgacaacatcgcaacagacgaagaaaaagcagcagcaagccaacatatgaagacactgtaccaactaacaaaaattatatgtaatgaaagaccaagataagtgcatctgtgctagacaaggagagaaaaatcatcaccggaaaggtagagaccataaacaggtggacagaacactttgcagaagttctcaaccggcctaaagcagataattcggtgagtgatgtcgacacaaactaagaagagcagatagaagacatcaactgtgatgaaccaagcatggtcgaatcaaaggggcgctaaagatgctaaagaataacaaagcaccagatattgatggaatacaagcagattttttaaaagcagacatgcggtttacagcgggaaatatgaaccctttggtatgatatggggagatgtggaagctccataaaactagacgaaaagactgatagtgaaactacccaagaaaggcaacctgagagaaagtaagaattggagaggcatcacccttctgccagtggtgagcaaagtgctgggccgcataattgtagataggatcagtaaagggattgacaaaagactcaggaaggaacaagcaggctaccgtaagggaagaggaaccacagaacaaatatttatcctcagaaacatttcgagaaggttaacgagtggcaggcaacgctttatcataactttattaattttgaaaaggcgtttgactcaattcatagagacagcttatggacaatcttaacagcttatggagtgcccaaaaa
gi|4 : agtgctcagatcagcagacattgggagcgGAAAAACGGATTAATA-TGAA---AACT---CCGAAAGAAAAGTGACATAAGCACTAATGGCGGCAATTGGAGAGA-ATTACACC-T-CATACCAACAACTAACAAGAAT--TGGGAGACA-ATTCAT---CAAGGATTGTGAAGAAAG----CTGACAAA-CAT-CTTAAAAATGA-ACAAGCT-GGGTTCAG---AGCTGA---G-AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTATTCGAAC-AA-GCCATTAGG-AATGGAA-TTCAA---C-----TTG--TACA--TCT----GC-TTCGTAGAAGATTTT---T-AGAA-GTATTCG-A--CAAT--TA-CATAGAAAAT-ATTA-T-TGAAA-ATCAT
gi|5 : aa-TTGACCAA-CAT-TTTAGAGAAGA-ACAGGCA-GGATTCCGAGAAG--GT---C-ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACATCG-TTGAGC-A-----A--AC--AGTGGAA-TGGAACTCC--AATCTA--T-AA--TACAGCTGT-TTCAT---CGACTTC---G-AGAGAGCTTTTG-ACAAAGT--TAACCTTG-ATAC-A-CTAT-GGAAA-ATCATGGaaaacactaacggaatccctataagatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|6 : cgTCTTGGGAGACGCAAGAAGGAT-----AAAAAA---CACGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GA-TACTAGGGACAA--TATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGG-TTAAAAGACATGA---GAACAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACCAACTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACAT-CATCACCAG-AAAGGAAGAGACCATGAACTGGT-GGCAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCG-ACACAAACGT-AGAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACACA--GTTTACAGCGGGACAGATT-------------GGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGT--------------------AAAGGCAGCCTGAGAG--AATG-TAAGAATTGGAGGGGTAT--------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGAC-AGGATC---AGGACAGGGA-TTGACAAA-AGA-CTCAGGAATGA-ACAAACA-GGCTACCG-TAAG--GG---A-AAAGGAACCACTGAACAA-ATATT-TATCCTCAGAgaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|8 : GG-TTGACCAA-GCATCTTAGAGAAGATACAGGCA-GGAT-CCG---AG--AT---A-GGAGTAA--ACA-AGCAG-ATTTT-CACACTCAGA--C-TCG-TGGAGC-AAAG--A--GTG-AATGGAA-ACCAA---TCTAGTACA--T-C---TG-----AT-TTCAT---CGACTTC---G-AGAAAGCATTTG-A---AGTGTT--CAT-G-AGACCAGCT-TATGAAA-ATCATGG
gi|9 : acAGAGATGA-ACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATAC-TGGAGC-AG-GTCA--TAG-AACGGAA-gaaaaatatggcatttccaggaaacttcgtcagaatcattaagtgcatgttatacacttacaacgaatgtgttgtaacatcaaacggaaacatcagaactagtttgaaatcaaatcggagtcaaacaggctgcacgtctgactttcttgttttaatgggtcgtagtctggataataaaactcaataagcatgagacaacacaggaattcagatgaaatttcacatcgaaactagatgacttaactgatgctgacgacatcgcattgatctcagtaaaggcaacaactaaagaaagttaactgatgtaaacgtagatatccagtccgatggcctacaaaattaaacacc
blockSeqs : C . . . TTCGC TG C CCCCACAACGCG G C A AC G G A CTTT A G . T C . . CT GA AT GT G G G G A . G . G A ATTAAAA CAC G A . . G . TT C CAA G . . CTA . T T . . A . G CTACTAG A A . T . . G . . . TA A C T A G GG T . CG GAACCCTTTGGTA G G GAAAACTCCGA A GCACTAATGGC G C TACACCTCATACCAACAA GA G G CC T T A A GTG G TATA A T . C A AG AGCTAAT C A C C C AT . AGTT TT T TTC CTCCAATCTATAATACAGCT C AGAA GA A . CT GT AA A A C G A AT . . .
blockSeqs : C . . . . . AA G . . . C . . . A T . . . . . C G . GC G G . . G . C . G C GAT C A A . . T . TT C GA T . . CTG . . G . . A . G C G C . . . . . . . . GT . C T A A . C . . TGGTA G G GAAACTACCC G GAGAAAGT G T CACCCTTCTGCCAGTGG TA . G AG T C G . . . GCAT T . . A A T CTGAC G G . . T A . GGTT . . GG TCTAGTACATCTG C T T G . TT . A A . . G . T . . .
blockSeqs : G A A C T A . . C . T . . A GAGAATGT G . . AA . . TT . T . . . . AGA G . . C T T CTGAG C A . . C A . AGCC . . GG CGCTTTACCTCA C A G G . CT . . A . . T . T .
blockSeqs : . . . AGA T . . G T T GGA G A . . T G . GGTC . . TT CTGATACATCTG C T G G . CA . . A . . G . G .
blockSeqs : . CAT A . . A A T GGA A A . . A G . AGC . . TG CGCTTTATCATA T T T A . . . . T . . . . . .
blockSeqs : . CAT T . . C . . GTC C A . . C C . AAG . . AC CTTGTACATCT T C G A . . . . . .
blockSeqs : . AGA A . . A . . GGA A A . . A . . . . . . C G . .
blockSeqs : T . . A . . ATA . . . . A
blockSeqCons : AGA** CGTNATACATCTG************** C* G****
originalCons : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAA---C--GNTTTA--T-CA--TA-----AC-TTCGT---CGATTTT---G-AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
finalCons : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAAAGA--CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAA-NGCAACGTNATACATCTG--------------AC-TTCGT---CGATTTTG----AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA
Alignments
lowQualScore : 1 1 1 777777777777777777 11 1 555555555555 11 1 1 222222 2 1 1 1 1 1 111 111 22 111 11 222 1 1 22222222 222222 1 1 111 1 111 1111 111 1 1 1 1 3333 1 1 1 3333333 11 1 1 1 1 1 111 11 1 33 5555555555555555555555 55555555555555555 22222222222 33333333333333333333 1 111 11111 1 11 111111111 11111 33333333333 1111 11111 11 222 1
lowQualScore : 6 3 0 3 3 333333333333333333 88 3 000000000000 6 6 7 55 1 3 2 666666 7 6 3 3 3 3 3 555 222 00 444 6 33 555 6 1 3 1 3 2 3 99999999 111111 1 3 0 0 444 0 111 6 8888 999 3 3 999 3 3 2222 3 0 3 7 0 3 6 9999999 1 1 88 7 3 3 6 0 3 3 3 000 7 6 7 7 3 0 00 1 3 66 1111111111111111111111 6 2 33333333333333333 2 44444444444 2 6 88888888888888888888 33 0 2 11 3 0 2 6 8 444 5 11111 1 4 4 1 3 44 555555555 2 3 4 4 1 88 5 44444 66 0 5 11 88888888888 33 1 1 888 3333 22222 4 5 88 77 33 1 5 6 2 6 99 6 333 3
lowQualScore : . . . . . .................. .. . ............ . . . .. . . . ...... . . . . . . . ... ... .. ... . .. ... . . . . . . . ........ ...... . . . . ... . ... . .... ... . . ... . . .... . . . . . . . ....... . . .. . . . . . . . . ... . . . . . . .. . . .. ...................... . . ................. . ........... . . .................... .. . . .. . . . . . ... . ..... . . . . . .. ......... . . . . . .. . ..... .. . . .. ........... .. . . ... .... ..... . . .. .. .. . . . . . .. . ... .
lowQualScore : 7 3 7 3 3 555555555555555555 33 3 333333333333 7 7 3 77 0 3 0 777777 3 7 3 3 3 3 3 333 333 77 000 7 33 000 7 0 3 0 3 5 0 22222222 222222 0 2 0 0 000 0 000 7 7777 333 3 3 333 3 3 3333 3 7 3 3 7 3 7 0000000 0 0 33 3 3 3 7 7 3 3 3 000 3 7 3 3 7 7 33 0 3 77 3333333333333333333333 7 5 22222222222222222 0 00000000000 5 5 00000000000000000000 55 0 5 55 2 2 0 5 0 000 0 66666 0 4 4 0 1 44 111111111 6 6 4 4 9 99 0 88888 99 2 0 77 77777777777 77 4 7 555 0000 00000 2 0 11 99 66 7 7 7 5 7 88 7 333 3
consensus : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAANGCAAC--------N--TTNTACATCTGAC-TTCGT---CGATTTT---G-AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
Reference ( family-2914 ) : AGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATCTTGTTCGCCACCACTCTTCGCACCACCATCACACTCAAAT--CGAAG-GGCATGAAGA------AA---GAGGAGAAACACAACAACCAGCAGNTAC-ATACGAGACTCT--TGATACCA-AC-TACAGGAACA-GATAC-ATA-ATAGC-TGTTCGAAACAGACA-CCAAGCTCTGGAGAAGAAGA-GGCAAAGGCGAACAGGAAGGACGGTGTAGAGGTTAGAAGCAATATAAC--GGAAGAAANC-ANATACAGAAGCAG-CCGAAGAGATTCTCGGGAGACGCAAGAAG-AT-----AAGAAA---C--GTGGANCAGCAACG-AAT-C--CTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-NA-TACTAGGGACAA--NATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATCAGGGAG-TTAAAAGACA-GAT--GAACAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGCAGAG-AAAGCAGCAGCAAGCCAACATACGAAGA-CACTGTACCAA--AC---TAACAAAANTTNTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAAAAT-CATCACCGG-AAAGGAAGAGACCATGAACAGGTGGGCAGAACACTTCGCA-GAAGTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAGTGAGGTCG-ACACAAACGTAAGAGGAGCAGATAGAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGGTATCGATGGAATACAAGCAGANCTTTTAAAAGCAG-ACATA--GTTTACAGCGGGAAAGATT---GAA-CCCTTCGGTA----TGATATGGGGAGATGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGTGAA---A-CT---C---AAGAAAGGCGACCTGAGAG--AATG-TGAGAATTGGAGGGGCATCGC-CC-T-C-TGCCAGTAGTGAGCAA-AGTGCTGGGTCGCATAGTCGTGGAC-AGGATC---AGGAAAGGGA-TTGACAAA-AGA-CTCAGGAANGA-ACAAGCA-GGNTACCG-TAAG--GG---A-AGAGGAACNACAGAACAG-ATATT-TATCCTCAGAAACATTA-TCGAGC-AG-GTCA--ACG-AGTGGAANGCAAC--------G--TNATACATCTGAC-TTCGT---CGATTTT---G-AAAAGGCGTTTG-ACTCAGT--T--CATAG-AGAC-AGCT-T-TGAAA-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|1 : AGTG-TCAGATCAGCCAGACATTGGGAGTGAACCGACTATCTTGTTCGCCACCACTC-------------CACACTCACAT--TGAAG-GGCATGAAGA------AA---GAGGA-AAACCTAACAACCAGTAGATAC-AGAAGAAGCTCTACTGAT-CCA-ACGTACAGGAACA-GATAC-ATATATAGCTTGTTCGAGAAAATCACCCAAACTCTGGAGAAGAAGA-GGCAAAGGTGAACA-GAAGGACGGTGTAGAGGTTAGAAGCAATATAACAAGGAAGAAATCAATATACAGAAGCAGACAGAAAAGATTCTCGGGCGAC---AAAAA-AT-----ACGAAAGGCC--GTGGACCAGC-ACGAAATACGGCTGGACAATTAA-T-GAAAAAGGAA-------CAACAAAAGATA-TATTAGGGACAAAGAATCAAGAAAGAGTAAAAAACACAA---AAGGAACAATACAGAGAAGAAGATCAGGGAGTTTAAAAGACA-GATCAGAACAGATAAACGGCAGTGGAGTTGACACCATCGCAAGAGACGCAGAGTAAAGCAGCAGCAAGCC-ACTGACGAAGAGCACT-TACCAA--AC---TAACAAAGTTTTAATGTTAAACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAGAGGGGGAAAAATCCATCACCGGAAAAGGAAGAAACCATGAACAGGTGGGCAGAGCACTTTACACAAAGTTCTTTATCGGCCTGAACCAGATGAATCGGGTGAGTGAGGTCGAACACAAACGCAAGAGGAGCAGATATAAGACATCAACTGTGATGAACCGAGCATGGTCGAAATCAAAGGGG-GCTAAAGATGC--AAG-----------ACCAAGTATTGATGAAATACAAGCAGAACTTTTAAAGGCAGAACATAACGTTTACAGCGGGAAAGATTAGAGAAGCTCTTCAGTGCATTTGATAT-GGGAGATGAGCAAGCTCCACAAAGCTGAAAGAAAGGACTGATTGTAAAGTTA-CC---C---AAGAAAGGCAACCTGA-----------GAGAATTGGA-GGGCATCGC-CTAT-C-TGCCA-TAGTG-GCAA-AGTGCTGGGTCGCATAGTTGTGGAC-AGGATC---AGGAAAGGGA-TTGGCAAATAGA-CAACGGAAAGA-ATAAGTAGGGCTACCG-TAA---GG---A-AGAGGAATCCCTG-ACAA-ATATT-TATCCTCAGAAACAGTA-TCAAACAAG-ATTA--ACG-AGTGGCAGGCAAC--------C--TTTTACCTCAAACTTTTGT---TGATTTTTTGA-AAAAAACGTTTGAACTCAAT--T--CA-AG-AGAC-AGCT-T-TGAAACATCATGGACAATCTTAGCAGCTTATTTAAGAGTGCGCCAGAAA
gi|14 : ccattaaagacaaccagAGTGCTTAGATCAAC-AGACATTGGGAGTGA-CC-ACCATCTTG-------------TTCGCACCACCATCACACTCAAAT--CGAAA-GGCATGAAGA------AA----AAGAGAAA-ACAACAACCA--AGGCACGATAC-AGA------TGATACCAGAC-TACAGGAACA-GATAC-ATA-ATAGC-GGTTCGAAACAGATA-CTAAGCTCTG--GAAGAAG--GGCAAA-GTGAGCAGGAAGGAC-GTATTGAGATTAGAAACAATATAAT---GAAGAAAAC-AGATACAGAAGCAG-CCGAAGGGATTCTTGGGAGAGGCAAGAAG-ATTAAAAAAAAAA---C--GTGGAGCAGCAACG-AAT-C--GTGGA-AACTAATT-GAAGAAAGAa
gi|17 : ttccattaaagacaccagGAC-AGGATC---AGGAAAGGGA-TTGGCAAA-AGA-CACGGGAAAGA-ATAAGTA-GGCTACCG-TAAG--GG---A-AGAGGAACCACTGAACAA-ATATT-TATCCTCAGAAACAGTA-TCAAAC-AA-GTTA--ACG-AGTGGCAGGCAAC--------G--CTTTACCTC-AAC-TTTGT---TGATTTT---GAAAAAAACGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T-TGAAC-ATCATGGACAATCTTAGCAGCTTAT---AGAGTGC-CCAGAAA
gi|2 : AAGGAAGTTGATAAATATA-TTCCGGA-TGC-ACAAGCT-GGAT-TTG--AAGCTGA---C-AGAGGAACGCCATGACAT-GTATT-TAATCTCGGAAATATTA-TCGAAC-AA-G-CA--ATATAATGGAATTCCAG--------C--TGATACATCTGA--TTCGT---AGATTGG---T-AAAAGGCATTCG-A
gi|29 : ttggaagatgatcatccaataaattgcgAC-TTTAT---TAATATT---G-AAAAGGCGTTTG-ATTCAGT--T--GATAG-AGtaacgtagatagaaaaatattatggagatgaaagaaaacgttacagaaggtcacaaaacactatgaaatatctgaaaagagtatacaattagtggaaaagcatgtataagaacagccagtgcgcaatcttgaccgggaatgaaacaaacaaatgatttggaataaaacatggattaaggcaaacttgcaatatggctggcttattatttctcttaacaaaagaatggattaagagatgaaagagagaagataagaacaaagggataagatggaatttgacctccaaacttgaggacctggactatgcagacgacaaatcacttctcactagcaacagggtcgcttaaaaataaaaaaatggacaaacttgtaatatatgttgagtctactggactcaagatgtatgtcacaaagacagaagttatgaggatgaaaaccaaaacaacaaccaaggtataaaagcaagatacaaggagatggaaaacgtgactagttatgtgtacatgtacttctaatacggaatgttaaagcattaaagaagtagaagatgaacacatccggataagactaagtctaaccagatctattttcttcatccaactcagcagaaaaacaaaaactatactcctcaaatacaacgtagcatcagttgtggtctattggagtgaaacacgtaagatgaacacaagtagaaaaaaacgcattcaactcatttttacacattgtcaagtgcttaagacaaatactaaaaatccacaggttacacaatgttcgaaacgagataatctgggaaacaacacgaatgaaaacaatacgtgtcattataatgaaaaaaaggtgggcaaggttggagcattttgtaaagatgggcaagaacagatttgcaagaatgtacgttacttggactttttaacacaaaaagtaaaacaaaaccaaaatagacgtggttaagaactaaggaaagagaacaaaatgagattgagtttaaatcataggaagaagcaaccaaagtagcgcaagatagataaaaaagggccttgttcgcgactgtattctccacatgaaaagaaagaaagaaatcaaatcagt
gi|3 : atcaatcaAGTGCTCAGATCAGC-AGACATTGGGAGCGA-CC-ACCATC
gi|3 : ACCACCATCACACTCAAATTGCGAAGCAGCAGAAAGACCCCACAACGCGCGACGAAACACAACA-CCAACGGCTAC-ATACAAGACTTT--TGATACCATAC-TACATGAATATGATACCACA-ATAGC-TATTCGAAACAGACA-C-AAGCTCTGGA--AGAAAATGACAAAG-CGAACAGAAAGGACG-TGTACAGGTTAGAAGCAACGCTTC--GGAA--AAGC-ACACACAGAGGCAG-CCAAAGAGATTCTCGGGAGGCGCCAGAAG-A------AAGAAA---C--GTGGAACAGCAACG-AAT-C--TTGGA-AACTAA-T-GAAGAAAGAACAGATATCAACAAAAG-CAATACTAGGGACAA--GATC-AGAAAGATT-GAAAACACAGCTAAGAGAACAATACAGAGAGAAAGATCAGAAAG-TTAAAAGACA-GAT-----CAGATAAACGGCAGTGG-GTCGACAACATCGCAACAGACGAAGAA-AAAGCAGCAGCAAGCCAACATATGAAGA-CACTGTACCAA---C---TAACAAAAATTATATGT--AATGAAAGACCAAGATA-AGTGCATCTGTGCTAGACAAGGAGAGAAAAAT-CATCACCGG-AAAGGTAGAGACCATAAACAGGTGGACAGAACACTTTGCA-GAAGTTCTCAACCGGCCTAAAGCAGAT-AATTCGGTGAGTGATGTCG-ACACAAAC-TAAGAAGAGCAGATAGAAGACATCAACTGTGATGAACCAAGCATGGTCGAA-TCAAAGGGGCGCTAAAGATGCTAAAGAATAACAAAGCACCAGATATTGATGGAATACAAGCAGATTTTTTAAAAGCAG-ACATGCGGTTTACAGCGGGAAATAT----GAA-CCCTTTGGTA----TGATATGGGGAGATGTGGAAGCTCCATAAAACTAGACGAAAAGACTGATAGTGAA---A-CTACCC---AAGAAAGGCAACCTGAGAG--AAAG-TAAGAATTGGAGAGGCATCAC-CC-TTC-TGCCAGTGGTGAGCAA-AGTGCTGGGCCGCATAATTGTAGAT-AGGATC---AGTAAAGGGA-TTGACAAA-AGA-CTCAGGAAGGA-ACAAGCA-GGCTACCG-TAAG--GG---A-AGAGGAACCACAGAACAA-ATATT-TATCCTCAGAAACATT--TCGAGA-AG-GTTA--ACG-AGTGGCAGGCAAC--------GCTTTAT-CA--TAAC-TTTAT---TAATTTT---G-AAAAGGCGTTTG-ACTCAAT--T--CATAG-AGAC-AGCT-T----------ATGGACAATCTTAACAGCTTAT---GGAGTGC-CCAAAAAacactcaaattgcgaagcagcagaaagaccccacaacgcgcgacgaaacacaacaccaacggctacatacaagacttttgataccatactacatgaatatgataccacaatagctattcgaaacagacacaagctctggaagaaaatgacaaagcgaacagaaaggacgtgtacaggttagaagcaacgcttcggaaaagcacacacagaggcagccaaagagattctcgggaggcgccagaagaaagaaacgtggaacagcaacgaatcttggaaactaatgaagaaagaacagatatcaacaaaagcaatactagggacaagatcagaaagattgaaaacacagctaagagaacaatacagagagaaagatcagaaagttaaaagacagatcagataaacggcagtgggtcgacaacatcgcaacagacgaagaaaaagcagcagcaagccaacatatgaagacactgtaccaactaacaaaaattatatgtaatgaaagaccaagataagtgcatctgtgctagacaaggagagaaaaatcatcaccggaaaggtagagaccataaacaggtggacagaacactttgcagaagttctcaaccggcctaaagcagataattcggtgagtgatgtcgacacaaactaagaagagcagatagaagacatcaactgtgatgaaccaagcatggtcgaatcaaaggggcgctaaagatgctaaagaataacaaagcaccagatattgatggaatacaagcagattttttaaaagcagacatgcggtttacagcgggaaatatgaaccctttggtatgatatggggagatgtggaagctccataaaactagacgaaaagactgatagtgaaactacccaagaaaggcaacctgagagaaagtaagaattggagaggcatcacccttctgccagtggtgagcaaagtgctgggccgcataattgtagataggatcagtaaagggattgacaaaagactcaggaaggaacaagcaggctaccgtaagggaagaggaaccacagaacaaatatttatcctcagaaacatttcgagaaggttaacgagtggcaggcaacgctttatcataactttattaattttgaaaaggcgtttgactcaattcatagagacagcttatggacaatcttaacagcttatggagtgcccaaaaa
gi|4 : agtgctcagatcagcagacattgggagcgGAAAAACGGATTAATA-TGAA---AACT---CCGAAAGAAAAGTGACATAAGCACTAATGGCGGCAATTGGAGAGA-ATTACACC-T-CATACCAACAACTAACAAGAAT--TGGGAGACA-ATTCAT---CAAGGATTGTGAAGAAAG----CTGACAAA-CAT-CTTAAAAATGA-ACAAGCT-GGGTTCAG---AGCTGA---G-AAAGGAATGACAGAACAGCATATTCTATTCTCAG-AATATTATTCGAAC-AA-GCCATTAGG-AATGGAATTCAAC-----------TTGTACATCTG-C-TTCGTAGAAGATTTT---T-AGAA-GTATTCG-A--CAAT--TA-CATAGAAAAT-ATTA-T-TGAAA-ATCAT
gi|5 : aa-TTGACCAA-CAT-TTTAGAGAAGA-ACAGGCA-GGATTCCGAGAAG--GT---C-ATAGTA-CAACAGAACAG-ATTTT-CACACTCGGGAACATCG-TTGAGC-A-----A--AC--AGTGGAATGGAACTCCAATCTA--TAATACAGCTG-T-TTCAT---CGACTTC---G-AGAGAGCTTTTG-ACAAAGT--TAACCTTG-ATAC-A-CTAT-GGAAA-ATCATGGaaaacactaacggaatccctataagatcacacattagtgaaaagcatgtataaccagcaagcagtgcgcaatatttactggactgcaacaataaaatagttgaagtaaaatctggagtaaagccaagcgcaatatgtctggtttcctattcgtctaaacaaagattttattattgagacaaaacagaaataacaacacaggaataagatggaatttgacatccaaacttgagttacctggacttaatgccagacggacacagcactacttagccgcaccagtgatcacttgtaaaaacaaaaacaaacttgtagaactgctgaatcaattggactcaagataaacgccagcaaagacaaaattacgagataagcaacaaaaccaaggtatagcaagcaaaagattcaggaatcggacaaaagtgttctagtttagctaatggttaaaaacaataggagaacaaatgaaggactaggcctaccaagatctgcatttctataagttaaaaaacaaaggaacgataaccaattcaagtagaatttaagaaaaactcaactcttcaatctaacgt
gi|6 : cgTCTTGGGAGACGCAAGAAGGAT-----AAAAAA---CACGTGGATCAGCAACG-AAT-C--CTGGA-AACTAA-TTGAAGAAAGAGCAGATATCAACAAAAG-GA-TACTAGGGACAA--TATC-AGAAAGATT-AAAAACACAACTGAGAGAACAATACAGAGAGAAAGATAAGGGGG-TTAAAAGACATGA---GAACAGATAAACGGCAGTGG-GTTGACAACATCGCAACAGACGCAGAG-AAAGCTGCAGCAAGCCAACATATGAAGA-CACTGTACCAACTACTAGTAACAAAAGTTCTATGT--AACGAAAGACCAAGACATAGTGCATCTGTGCTAGACAAGGAGGGAAACAT-CATCACCAG-AAAGGAAGAGACCATGAACTGGT-GGCAGAACACTTCGCA-GAACTTCTTAACCGGCCTGAACCAGAT-AATCCGGTGAATGAGGTCG-ACACAAACGT-AGAGGAGCAGATAGAAGACATCAACATTGATGAACCGCGCATGGCCGAAATCAAAGGAGCGCTAAAGATGCTAAAGAATAACAAAACATCAGGTATCAAT---------GCAGACCTTCTAAAAGCAG-ACACA--GTTTACAGCGGGACAGATT-------------GGTA----TGATATGGGAAGAAGAGCAAGCTCCACAAAACTGGAAGAAAGGACTGATAGT--------------------AAAGGCAGCCTGAGAG--AATG-TAAGAATTGGAGGGGTAT--------------------TAAGGAA-AGTGCTGGGTTGCATAGTTGTGGAC-AGGATC---AGGACAGGGA-TTGACAAA-AGA-CTCAGGAATGA-ACAAACA-GGCTACCG-TAAG--GG---A-AAAGGAACCACTGAACAA-ATATT-TATCCTCAGAgaaagtatgacattccagaaaaactcatcagaatcattaagtgcatgtatactgacaacgaatgtgctgtgttaacgccaaacggaacatcagaatgatatgaaatcaaatccggagtcaaacaaggctgaaatatgtctggctttctttttctaatggtcataaactggataatgagaaactcaacagcaaacgacaacacaggaatcagatgaaatttcaccaccaaactagatgacttagattatgctgacgacatcgcattgatctcaagcacaaaggaacaactgcaaagaaagtttaatgatgtaaacagatacatgtatgcccactccactgacctaaaaataaacacctcaaaaaccaaaataatgagaatgaatgccaacaacaatcaaccaatcacgaacaatgaccaaaaacaaattaaggatgtaaaaacatttaactgcacgtacttggaagctataataaccagcacaggaggaaccaatgaggacatcagaagacgacttggtcttgcgagacacacttacaacagattagctccaatatggaacagcagccccatttcaaaaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca
gi|8 : GG-TTGACCAA-GCATCTTAGAGAAGATACAGGCA-GGAT-CCG---AG--AT---A-GGAGTAA--ACA-AGCAG-ATTTT-CACACTCAGA--C-TCG-TGGAGC-AAAG--A--GTG-AATGGAAACCAAT--------C--TAGTACATCTGAT-TTCAT---CGACTTC---G-AGAAAGCATTTG-A---AGTGTT--CAT-G-AGACCAGCT-TATGAAA-ATCATGG
gi|9 : acAGAGATGA-ACAAGCA-GGAT-----TAAA--AGCTAATAGAGGAACAACAG--CAG-ATATT-TATATAGAGGAATATAC-TGGAGC-AG-GTCA--TAG-AACGGAAgaaaaatatggcatttccaggaaacttcgtcagaatcattaagtgcatgttatacacttacaacgaatgtgttgtaacatcaaacggaaacatcagaactagtttgaaatcaaatcggagtcaaacaggctgcacgtctgactttcttgttttaatgggtcgtagtctggataataaaactcaataagcatgagacaacacaggaattcagatgaaatttcacatcgaaactagatgacttaactgatgctgacgacatcgcattgatctcagtaaaggcaacaactaaagaaagttaactgatgtaaacgtagatatccagtccgatggcctacaaaattaaacacc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACACGATTAGTGAAAAGCATGTATAACAACAGCCAGTGCGCAGTCTTGAGTGGGAATGTAATAATAGAATTGTCGAAGTAAAATCTGGAGTAAAGCACGGCTGGTTTCCTATTCCTCTAAACAATAGACCGGATTATGAGACAAAGAACAGAAAATAACAACACAGGAATAAAATGGAATTTGACATCCAAACTGGAGAACCAGGACTATATATGCAGACGACATACTGTAGCACTACTTACAAGCACCCGGGATCACTTACAACAACAAACGGATAAACTTGTAGAACATGCTGAAGCCACTGGACTCAAGATAAACGCAGCAAAGACAAAAGTTATGAGGATGAACACTAACAACAATCAAGGTATAACAGCAAAGGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACCTAGGCGGAATGGTAAAAACAACAGGAGGAACAAATGAAAACATCTGGAGAAGATTGGGCCTAGCAAGATCTGCATTCTAAAAGTTAAAAGCAATATGGAACAATAACCAACTCAGTAGAAGAACAAAAACTCAACTCTTCAAATCCAACG
Unaligned ( gi|10 ): TCTATGAAAGCGAAATATGGAAAGTGAACAAAGTTGATGAAAACAAATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCACTGGCCGCAGAAGGTTCGAAACGAGGTAATCCGGGAAACTGCAGGAATGGAAATGATAAGTAGCATGATAAGTAGCATCATAAATAAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCAATCAAAGTAGCGAAAGATCGATCAAAATGGAGGGGACTTGTTCACGGCCCTATTCTCTACATGGAGAGGAAATAAGTCAAGTAAGTCA
Unaligned ( gi|11 ): TATGAAAGCGAAAATATGGAAAGTGAACAAAAGTATGAAGAAACATTGGACTCCTTTTTACACAAATGCTTAAGAAAAATCCTGAAAATTCAACTGGCCGCAGAAGGTTCGAAAACGAGTAATCCGGGAAACTGCAGGAATGGAATGATAACGTAGCATGAAAGTAGCATCAAAAAATAACGAAGGTGGACGGATTTAAGAATGGACAAGAACGGGCATGCAAGAATACCCCTTACTTGGGCCCTCCTGAAGGCAACAGAAAGAGAAGTAGACCAAAAGAGATGTGCGAAGAACTGTGGAAAACAGAACGAAATGAGATTGGGTTTAATTCATGGAATGAAGCATCAAGTAGCGAAAGATCGATCAAAATGGACGGGGACTTGTTTCACGCCTATTCTCTACATGGAGAGAAGAATAAGTCAAGTAAGTC
Unaligned ( gi|12 ): AACATCATGGAACAAAGTACATGTAGTGAATGGAGACTAAATCTATATCTTTTATTCGTTAATTTGACATTGTACATCGTGAAGCATTACAGGGGATTTCAAACCAGTACGAAATCCCACAACAAATAATTATGATCAAATCAATACACATCAACAACAAGTGTGTTTTCATAGATGAAAATAGGACATCCGACTGGTTTACAGTGAGGTCCGGAGTTAAACAGGGATGTAACATGTCGGGATTCTTATTCATTTTGGCGACTGACGAGATCATTGACAACGTAACATATATTAGACAATGAATTGCGGTATCCGATGGAACTTTACATCCTATTGTAAACGATAAATAGATTATGCTGATGATTTTTGTTTTCATGACAAACAGAAATAGGCCTA
Unaligned ( gi|13 ): TCTGTGGAGGCGAACATGAGAAATGAACAGAGTTGATGATAATATAGCCTATTTGGCTCCTTTTTACAAAAAAACGCTTAAAGAAAAATTAAGCCGAAAATTCAGCGTTCGAAATGAGGTAACCCGGAACAGCAGAAATGGAAACGATTAGTAACTCGTAAAGAAACGAAGGTGGACATGATTGGGACATGTTTTAAGCTGCACAGAACAGGCAGCAAGAAACATGACTCCAGAAGGCAACAGAAAAGACGTGCGAAATCTGTTGGAAGAAACGAATGAGATTGGTTAATCAGGAATGAAGCAACTAAGTAGCTTAAAGATATTATCAAAAGATGAGGATTTGTTCTCCACAGGGGATAAGGGAAAGAAGTAAGTAAGTC
Unaligned ( gi|15 ): CTCGTCAGAATCATTAAGTGCATGTATGCTGACAACGAATGTGTTGTAACATCAAACGAAACATCAGAATAGTTTGAAATCAAATCCGGAGTCAAACAAGGCTGCAACATGTCTGACTTTCTTTTTTAATGGTCATTGTCTGGATAATGAAAAACTCAATAGCAGACGACAACACAGGAATCAGATGAAATTTCACCATCGAACTAGATGACTTAGACTATGCTGACGACATCGCATTGATCTCAAGTACAAAGGAACAACTACAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTCCACTGGCCTAAAAATAAACACCTCAAAATCCAAAGTAATG
Unaligned ( gi|16 ): TGAAAATTCACCGGCCACAGAAGGTTCGAAACGAGGTAATCCGGGAAACAACAGGAATGGAAACGATAAGTGACATCGCAAAACAAAAACAAAGATGAACATAGTTGGATCACGTTTTAAGGATGGGCAAGAACAGGCATGCATGAATATCCCTTACTTGGACTCCTGAAGGAGAAGACCAAAAGAGACGTGGCGAAGAACTGTGGAAAGAGAACGAAATGAAATTGGGTTTAAATCATGGAATGAAGCAACCAAAGTAGCGAAAGATAGATCAAAATGAAGGGGACCTGTTCACGACTCTATTCTCCACAGGGAGAGAAGAAAATAAGCAAGCCACG
Unaligned ( gi|18 ): GAATGGTTTGAAATCTAATCTGGAGTCAAACAAGGCTGTAACATGTCTAATGGTTATAGACTGGATAATGAGAAACTCAACAGCAGACGACAACACAGGAATTAGGTGGAATTTCACCACCAAACTAGATGACTTAAACTATGCTGACGACATCGCATTGATCTCAAGCACAAAAGAACTGCAAAGAAAGTTTAATGATGTAAACAGATATGCCCACTTCACTGCCCTAAAACTAG
Unaligned ( gi|19 ): AAGATGGACTTTAGAACATGTGCAGAGAATGAGCATTACACTAACTTGGGCACTACGTAGCAACTAGAGAGGACAAGCCAAGGAAACCGTGGTCCAAGCCAACCATAGCGAAAGAGGGGAATGAAACAGACCTTCAGACATGGGCATGGTCTAACGCAAAAAAAGTGTCTAAACTGATAGAGGAGTTGAGAGGACTTGTTTACGGTTTTATTTACTACAGGGAGAG
Unaligned ( gi|20 ): TCAGAATCCGTTGATGTCATATCAGGAGTACAGCAAGGATGGAGTATGTCTCCTATCTTGTTCTTGCTGGTTATAGACTAGATACAGAGAAATACAATCCCTGACAAAGAAAAGAGGAATTCAGTGGATTTAGTTTAATCAGAATTGAGAGGACTTTGATTTTG
Unaligned ( gi|21 ): GAGAGGGAAAGAAAAGAGCTGGGTTTCTCCTCATGGCACGAAGCAAGAACAGTGGCAATGGAAAGATCAATGTGGAGGGGACTTGTGAACGGCCCGATTCTCCAAACGGAGAGACGGAAATAAGTAGTTTTTATTTC
Unaligned ( gi|22 ): ATGAGAAAAGCAGTCGCCAGTAACGACACAGGTATAAGATGGAACTTCACCTAAAAACTAGACGATCTAGATTACGCAGACAACATAGCACTTTTATCCAGCACAAAAGA
Unaligned ( gi|23 ): AAAGATTTGGTCCTAGCAAGTCTGCATTTCTAAAAGTTAAAGCAATATGGAACAATAACCAACTCGTAGAAGAACAAAAAACTTCAACTCTTCAAAATCAACGTA
Unaligned ( gi|24 ): ACAGTATGGAGAAGAGCAAAATGGAGACGGATTGTTAAATGGCCCGATTCTCCAAAACGGAAGAGACAGAAACACTTTGATTGCAT
Unaligned ( gi|25 ): ACCAAAGTAGTGAAAGATAGATCAAAATGGAGGGCCTGATATTCTCCACAGGGAGAAGAAGTCAAGTAAGTCAATCT
Unaligned ( gi|26 ): ACGACTAATGAAGAGTATGTATAACAACAGCCAGTGCGCAATCTTGACTGGGAATGGAACAACTGAATGATTT
Unaligned ( gi|27 ): AAAAATGGACAAACTTGAAGTAGATGTTGAGGCCACTGGACTCAAGATATATGTCGCAAATACAGAAGAGGAT
Unaligned ( gi|28 ): GACTTGTTCACAGTCCTATTCTCCACAGGGTGAGAAGGAAATAAGTCAAGTAAGTCACG
Unaligned ( gi|30 ): TACCATTAGTGAAAAGCATGTATAACAACAGCCA