lowQualScore : 11111111111111111111111111111111 22222222222222222222222222222222222222222222222 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 22222 222222 111 7777777777777777777777777777777777777777777777777777777777777 1111 111111 2222222 33333333333333 111111 33333333333333333333333333333333 11 777777777777777777 1 44444444444 1 2222 11 66666666666666666666666666666666666666666666666 111 1 1 11 11 11111 1 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2222 33 1 1 444444444444444444444444444444444444444444444444444444444 2222 1111 1 1 11 111 44444444 222 1 11 1 555555 8888888 1 2 2 6666666 55 11
lowQualScore : 6 33 3 1 0 3 99999 6 6 1 777777 777 3333333333333333333333333333333333333333333333333333333333333 1 5555 3 111111 6666666 0 99999999999999 333333 1 00000000000000000000000000000000 33 1 444444444444444444 0 4 4 2 6 11111111111 22 9 0 7 2 2222 555 4 0 5 6 7 88 33333333333333333333333333333333333333333333333 4 2 1 555 5 8 3 333 33 00 88888 1 5 5 7 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 0 1111 3 0 33 0 3 2 666666666666666666666666666666666666666666666666666666666 4 7 0 9999 8888 8 3 5 0 0 9 00 444 11111111 3 333 3 7 1 8 3 33 6 9 3 55 1 111111 0 6 4 6 1111111 5 3 2 0 3 1111111 6 55 22
lowQualScore : . .. . . . . ..... . . . ...... ... ............................................................. . .... . ...... ....... . .............. ...... . ................................ .. . .................. . . . . . ........... .. . . . . .... ... . . . . . .. ............................................... . . . ... . . . ... .. .. ..... . . . . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ . . .... . . .. . . . ......................................................... . . . .... .... . . . . . . .. ... ........ . ... . . . . . .. . . . .. . ...... . . . . ....... . . . . . ....... . .. ..
lowQualScore : 0 88 2 2 8 2 88888 6 6 4 222222 555 1111111111111111111111111111111111111111111111111111111111111 4 0000 2 222222 0000000 8 66666666666666 444444 4 88888888888888888888888888888888 88 2 555555555555555555 0 0 0 5 5 00000000000 22 8 5 8 0 2222 888 2 2 0 0 3 77 77777777777777777777777777777777777777777777777 0 0 4 000 0 0 2 666 88 88 44444 4 7 0 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 0 5555 2 2 88 0 2 3 000000000000000000000000000000000000000000000000000000000 0 7 7 7777 7777 3 7 0 0 2 8 00 444 77777777 7 333 7 3 0 3 3 33 7 0 3 33 0 777777 7 7 0 0 7777777 5 0 5 0 0 0000000 0 00 00
consensus : TAAAACAA--TCGATTTAGATTTCACGAGAAAACACATTTCTCATCCTAGAATAAGATTTGG-T-AT-AATGGTTCT---ATAGTCAGCG---------------ATGTCAATA--GTT--ATACT--NA----TT--TG--------GGAATA-ANTTTTNA--GTNNGATGGCG-------GTTGG--------AAGACNCATATAT--TAGATATAC----------ATGAAAAG---T----C-----GAT--TAAACATTTCGCG----CGTG---------CTGAAA-TATNCNCTAAACNGNCAA--------TCTTTGATTAAAATTTATTNCTCTTTTATTCATCNTATTCTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTNCAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGAAT-NAA-TTCTTC----CAGAACAGCACTGTATAATGAATTAGGCTGGGATA-----GTTACNA----------GAAGAAA--AGTTC--AT-AATCTTATCTTATTNTACAAAATAGCTTATGGCAT-GCTCCCCAATATCTTCA------------NGAACTTTTGAT---ACCTTA---CGCATCCNCCN-CAANATTCATAT--ACTT----G-GCAAT-GATAGTNTCA--ATAAATTTATCCCTCCTCGAGTTAGGACCNCATCGT-----ATATGAATAG-CTTTCT--A-----CCNTCCACTATCAGATTATGGAATGACCTACC-A---ATAC-----AC---------------CTNC--A-----CTTT--CA--TCAT---TTAAAAC-------------------CGCTT----T--------------------GTAAAA-NACGT-ATTGNTNATGG----AAACCAAA--TAA--AC-AT------TT-GTCAACTTAG-AAAN---AATGCAAGCAATTTG-AA-TGCAGATCTTAAAAACCACT--------TCT-----------TACGTGGTTATTTTTT---------------T---TGTGATAANTGTGGNCACCATACTGAAAATGC-TTTCATTTTTTTT--TCGATTNTCCTGAGTTTGC-TGACCATAGAACTATT--TTAGTT--AG---CTNTCA---ACGAAACGCAACTTGCAG-TTCCTNTATCACTTAATCTACTT-TTANATGGTGATG-----ACGTGTCTAAATNTTAAAGTCAATG-A-AAGATCTTTGATGCTGNANAGCAAGTGATATTCTGG-ACACGGAAAGGTTTTTAT
Reference ( gi|3 ) : TGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCAATGGTTCT---ATAGTCAATG---------------ATGTCAATA--ACT--ATACT--AA----TT--TG--------GGAATA-ATCTTTCA--GTCAGATGGTG-------GTTGG--------AAAACTCATATAT--TAAATATAC----------ACAAAA-----C----C-----GAT--TAAACATTTTACG----CTCA---------CTAAAA-TATTCACTAAACCGCCAA--------TACTTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGGAT-TAA-CTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGAT------GTC--------------GAAGAAA--AATTC--CA-AAACTAACATTATCTTCCAAAATAGTTTATGG-----------AAT---TCCA------------TGAACTATTGCT---ACCATA---CACA-CCATCT-CAATATTCATAT--ACTTTAAGACATAAT-GATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGT-----GTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATGATCTACC-A---ATAT-----AC---------------CTTC--A-----CTTT--CA--TAAT---TTAAAAC-------------------TGCTT----T--------------------GTAAAA-GATGT-ATTGCTTG-------AAACCTAA--TAG--A--AT------TT-GTCAACTTAG-AAAT---AATGCAAGCAATTT--AA-TGCAGATCTTAAAAACTACT--------TCT-----------TGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGCTTATCATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATT--CTAGTTTCAG---CTCTCA---ACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCAATAGTTCT---ATAGTCAGCA---------------ATGTCAAT-----C--ATACT--TA----TT--TT--------GGAAGA-ATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATAT--TAAATATAC----------TCAAAAAGCATCAAGAC-----GAT--TAAACATTTCACG----CATA---------CTAAAA-TATTCATTAAACCGCCAA--------TCCTTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|4 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaTAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AAAAATTGTTTA---ATAGTTAGCG---------------ACGTCAATA--GTT--ACACT--CA----TA--TG--------GGAATG-TGTTTTTA--GTCAGATGGTG-------GTTGG--------AAAAC--ATGTAT--TATATATACTTGAGAAGGCATAAGA-----T-----------AT--TAAACATTTAATG----CGTG----------TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGT---ACATTTATTTGATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGAAG---TAACCTCATC----CAGAA
gi|2 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-AATGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAA----TTACTG--------GCATTA-ATTCTTAATTGTGTGATGGCA-------GTTGG--------AGG--TCATATATCTTGGATATTC----------ATGAAAAGGCAT----CAAGTAGAC--TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGTAA--------TCTTTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGAAT-GAA-TTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCACTA----------GAAGAAA--AGTTC--AT-AAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCA------------AGAACTTTAGAT---GCCTCAGCTCGCATCCCTCCACAAAACTCATATCCACTT--AGAAACAAT-GATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTTACCAGCATGAACAt
gi|9 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatccccAA--TTGATTTAGAATC-ACAA--AAACAT--TTCTCATCCTAGAATAGAATGTGGTT-AT--ACGGTTC
gi|1 : taaatatgaaaatattctatataaactaaagatgccatggtaaatcttaacatatcactaaaagtggtttgaaaaactatttatcgcatagatcacaaaaaaccctatacattctgaaattcctcaagggccgtttaggcccactcttatttattgcatactaaaatgatacatgtatttctgatgatttaacaattagtgtatctgttacacatctgtgttatgttattgattaataatggtataaaagtacaaactatttcatttctcttgagaaaataaaacagtgatgtatgaattccaatttccaataagcaAAGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-AATGGTCCT---TAAGTTATCA---------------ATGCAGAAA--GTT--ATACG--CA----TT--TA--------GGATTA-AAATTTCA--GTGTAATGGCA-------GTTGG--------GAGTCACATATAT--TAGATAGTC----------ATGAAA-----
gi|1 : ctgTA--A-T--ATACT--AACCATTT--TGCATATGCTGAAATATACNTTGAA--G--AGATAGTG-------AT--G--------AAAAGACATCTA------ATATAC--------------------------C-----GGTACTAACCATTTTGCA----TATG---------CTGAAA-TATACTCTAAATAGGCAA--------TTTCTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGAAT-AAA-TTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGAT------ATTTTAGACACTAGTTAGAAGAAA--AGTTC--AT-AATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCA------------GGAACTTATGAA---ACCTTG---CACATCCA-CA-AAACATCTATCC--AC---------TAATAGAAAGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCAT-----ATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTACA--TCAT---TTAACAC-------------------CACTA----T---------------------TAAAATTATGT-ACTACAAA-------ATACCAAA--TAA--ACTGT------TTAATCA---TGGTAAATGCCAA-GTAAACATTCTGCAT-TACAGA--TTAAAAAATAATGCCAGTGATCTAAATTTTTACCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATTTCATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACT--TTAAT---AGAGTCTATCA---ACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGTA-AAGATTTTTGA-ATTGGAAAGCAAGTGATagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagagatagtgatgaaaagacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|14 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatt-----AG--AGGA-----------------TGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGA-GATATAA-TTCTTC----AAGAA
gi|10 : gctgatgttgtatgggatgggtgcagtccaagattcaaaattactCTGCTACAAGAATAATTACTGG-AACGAGAAT-GAA-TTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAA----GTTACCA----------GAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGG-----------CAT---CGCACCTGGTTATCTTTGAAATATT-TTAGAATTATA---CACC-CCTCCT-CAAT-TTCA-AT--A-TTCACCGCG-AA---ATATTTTCA--AT----------CA-ATCAAGTT----CC------T-----ATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATGACCCGCC-A---gtaaattgtacacag
gi|5 : actagtttA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGT-----ATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATGATCTTCC-A---ATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--CA--TCAT---TTAAAACTGCTTTGAAAAACATGTATTGCTTGAAAC--------------------GTAATA-AACAT-TTTGATTATGGT---AAACGCAAAGTAA--AT-ATCTTACATT-GTCAACTTAG-AAAA---AATGCAAGCAATTT--AAATGCAGATCTTAAAAACCACT--------TCT-----------TACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGCTTTTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATT--TTAGTTTCAG---CTCTCA---ATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTAT
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGT-----ATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACTACTTACC------TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA--------------------TGCTT----TAAAATATTGTTTGAAATATAGTAAAC-GATTTCATT-TTCGTAAATGCAAAACAAA--TATTCA--AT------T--GTCAACTTAG-AAAA---AATGCACTCAATTTG-AA-TGCATATCTTAAAAAC-ACT--------TCT-----------TGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGAA------ACGTGTCTAAATGTTAAAATCAATA---Aaaat
gi|21 : ------TT-GTCAACTTAG-AAAT---AATGCAAGCAATTTA-AA-TGTAGATCTTa
gi|8 : agaaagtaaattatatcttatacaTTGC-TGACTATAGAACTATT--
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 2222222 22222222 1111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 6666666666666666666 22222 3333 1 111 222 11 666666666666666666 111 22222222 1111 8888888888888888888888888888888888 11 22222 1 77777777777777777777777777777777777777777777777777777777777777777777777 1 1 222222222222 1111 3333333 11 44444444444 7777777777777777777 22222 11 1 11 11 3333333 111 1 1 3333333 222 2 1 2 11
lowQualScore : 11 2 0 0 1 3 1 4 4 6 4444 6 6 444 000000000000000 55555 5555 11 6 1 1 99 44 0 1111111 44444444 0000 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 2 3333333333333333333 55555 4 4 0 1 0000 33 22 3 1 0 4 9 2 777 2 777 1 33 44 3 33 999999999999999999 1 2 222 3 2 1 0 444 7 8 77777777 1 3 7777 5 4444444444444444444444444444444444 33 55555 0 55555555555555555555555555555555555555555555555555555555555555555555555 0 0 8 555555555555 88 0 44 8 7777 6 8 0 1111111 33 77777777777 6 0 7777777777777777777 1 1 66666 33 2 4 1 0 9 00 33 3 8888888 1 777 0 2 3 4 0 1 2 1 0 1 8888888 2 1 777 0 888 1 1 3 0 2 88 4 0 77
lowQualScore : .. . . . . . . . . . .... . . ... ............... ..... .... .. . . . .. .. . ....... ........ .... . . . ............................................. . ............... . . . . . . ......... . . . .. . . . . ...................... .. . . . . . . . .... . . ................... ..... . . . . .... .. .. . . . . . . ... . ... . .. .. . .. .................. . . ... . . . . ... . . ........ . . .... . .................................. .. ..... . ....................................................................... . . . ............ .. . .. . .... . . . ....... .. ........... . . ................... . . ..... .. . . . . . .. .. . ....... . ... . . . . . . . . . . ....... . . ... . ... . . . . . .. . . ..
lowQualScore : 00 8 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 0000 00 7 0 0 22 33 7 7777777 22222222 3333 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 0 0 0 7 888888888 5 4 0 22 8 4 2 0 5555555555555555555555 88 8 0 0 7 7 7 5 2222 2 5 8888888888888888888 00000 0 0 2 0 5555 88 88 2 0 0 0 8 5 555 0 000 0 55 22 2 88 222222222222222222 0 5 888 2 2 8 7 000 5 0 22222222 0 2 0000 6 2222222222222222222222222222222222 88 00000 5 00000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 000000000000 88 8 66 0 0000 4 0 8 2222222 88 55555555555 5 8 0000000000000000000 0 0 55555 88 0 0 0 0 8 00 88 2 2222222 0 555 2 0 2 0 0 0 5 2 0 0 8888888 5 0 000 7 777 0 0 3 7 0 00 0 0 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATA-ANTTTTCA--GTCNGATGGCG-------GTTGG--------AAAACACATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGAT-ANTTTAG-CACTAG----AAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCAATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACTT---A--G---CA--AT-GATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATGA----CCTACCAATAC-----AC---------------CTTC--A-----CTTT--CA-----TCATTTAAAACCGCTTT--------GT---AAA------A-NA--------------CG----TA---------TT---GNTTACGG-AA-AC-CAAA-TANAC-AT------TT-GTCAACTTAGAAANAATG-CAAGCAA----TTTGAA-TGCAGATCTTAAAAA------CCACT--TCT-----------TGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-TCATTTTTTC--TTCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCGATTTAGATTTCACGAGAAAACACATTTCTCATCCTAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTN---ATT--TGGGAATA-ANTTTTNA--GTNNGATGGCG-------GTTGG--------AAGACNCATATATTAGATATACATGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCNCTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCATCNTATTCTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTNCAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATNAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGCTGGGAT-AGTT-----ACNAG----AAGAAAAG-----TTCATAATCTTATCTTATTNTACAAAATAGCTTATGGCAT-GCTCCCCAATATCTTCANGA-ACTTTTGATACCTTA---CGCA-T-CCNCCNCAANATTCATAT--ACTT---G--G---CA--AT-GATAGTNTCA--ATAAATTTATCCCTCCTCGAGTTAGGACCNCATCGTATATGAATAG-CTTTCT--A-----CCNTCCACTATCAGATTATGGAATGA----CCTACCAATAC-----AC---------------CTNC--A-----CTTT--CA-----TCATTTAAAACCGCTTT--------GT---AAA------A-NA--------------CG----TA---------TT---GNTNATGG-AA-AC-CAAA-TAAAC-AT------TT-GTCAACTTAGAAANAATG-CAAGCAA----TTTGAA-TGCAGATCTTAAAAA------CCACT--TCT-----------TACGTGGTTATTTTTT---------------T---TGTGATAANTGTGGNCACCATACTGAAAATGC-TT-TCATTTTTTT--TTCGATTNTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTT--AG---CTNTC---AACGAAACGCAACTTGCAG-TTCCTNTATCACTTAATCTACTT-TTANATGGTGATG-----ACGTGTCTAAATNTTAAAGTCAATG--AAAGATCTTTGATGCTGNANAGCAAGTGATATTCTGG-ACACGGAAAGGTTTTTAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTA-AAATTTCA--GTGTAATGGCA-------GTTGG--------GAGTCACATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGAAATATACNTTGAA--G--AGATAGTG-------AT--G--------AAAAGACATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGAT-ATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCACAA-AACATCTATCC--ACT------------A--ATAGAAAGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTACA-----TCATTTAACACCACTAT---------T---AAA------ATTA--------------TG----TA---------CT-------ACAA-AATAC-CAAA-TAAACTGT------TTAATCA---TGGTA--AATGCCAAGTAAACATTCTGCATTACAGA--TTAAAAAATAATGCCAGTGATCTAAATTTTTACCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-TCATTTTTTC--ATTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAA-T--AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT-----ACCAG----AAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATTC---ACCG---CG--A--AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATGA----CCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTA-ATTCTTAATTGTGTGATGGCA-------GTTGG--------AGGTCATATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGAT-ACTTTAGCCACTAG----AAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACTT---A--GAAACA--AT-GATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-TATAC-AT------T--GTCAACTTAGAAATAATG-CAAGCAA----TTTAAA-TGTAGATCTTtaccagcatgaaca
gi|3 : agaaagtaaattatatctTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATA-ATCTTTCA--GTCAGATGGTG-------GTTGG--------AAAACTCATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGAT--GTC---------G----AAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGG-----------AAT---TCCATGA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACTTTAAG--A---CATAAT-GATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATGA----TCTACCAATAT-----AC---------------CTTC--A-----CTTT--CA-----TAATTTAAAACTGCTTT--------GT---AAA------A-GA--------------TG----TA---------TT---GCTT---G-AA-AC-CTAA-TAGA--AT------TT-GTCAACTTAGAAATAATG-CAAGCAA----TTT-AA-TGCAGATCTTAAAAA------CTACT--TCT-----------TGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTATCATTTTTTC--TTCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATG-TGTTTTTA--GTCAGATGGTG-------GTTGG--------AAAA--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATGA----TCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--CA-----TCATTTAAAACTGCTTT--------GA---AAA------A-CATGTATTGCTTGAAACG----TAATAAACATTTT---GATTATGGTAA-ACGCAAAGTAAAT-ATCTTACATT-GTCAACTTAGAAAAAATG-CAAGCAA----TTTAAA-TGCAGATCTTAAAAA------CCACT--TCT-----------TACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGCTTT-TCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACTA----CTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAAT-GCTTTAAAATATTGTTTGAAATATAGTA-AA--------------CGATTTCA---------TTTTCGTAAATGC-AA-AA-CAAA-TATTC-AA------TT-GTCAACTTAGAAAAAATG-CACTCAA----TTTGAA-TGCATATCTTAAAAA-------CACT--TCT-----------TGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA-------ATTTTCTT--TTCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGA-ATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 66666666666 11 111 1 22222222 1111 8888888888888888888888888888888888 11 22222 1 77777777777777777777777777777777777777777777777777777777777777777 1 1 2222222222 1111 3333333 11 44444444444 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 3333 2 555 0 1 9 2 777 777 77 1 44 3 33 33333333333 33 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 33 55555 0 22222222222222222222222222222222222222222222222222222222222222222 0 0 8 1 4444444444 88 0 44 8 7777 6 8 0 1111111 33 77777777777 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ........... .. . . ... . . . ... . . ........ . . .... . .................................. .. ..... . ................................................................. . . . . .......... .. . .. . .... . . . ....... .. ........... . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 2222 5 222 0 0 8 5 555 000 55 0 55 2 88 00000000000 22 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88 00000 5 55555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 4444444444 88 8 66 0 0000 4 0 8 2222222 88 55555555555 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACTT--A--GA-ACAAT-GATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--CA-----TCATTTAAAACCGCTTTG----------TAAAA-TA--------------T-GTAA--GAC---TTGATT-------ACGG-AA-AC-CAAA-TANAC-AT------TT-GTCAACTTAGAAANAATG-CAAGCAA----TTTGAA-TGCAGATCTTAAAAA------CCACT--TCT-----------TGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAANTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCAATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACTT--A--G---CAAT-GATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--CA-----TCATTTAAAACCGCTTTG----------TAAAA-NA--------------C-GTA---------TTGNTT-------ACGG-AA-AC-CAAA-TANAC-AT------TT-GTCAACTTAGAAANAATG-CAAGCAA----TTTGAA-TGCAGATCTTAAAAA------CCACT--TCT-----------TGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACT-----------AATAGAAAGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTACA-----TCATTTAACACCACTAT-----------TAAAATTA--------------T-GTA-------------CT-------ACAA-AATAC-CAAA-TAAACTGT------TTAATCA---TGGTA--AATGCCAAGTAAACATTCTGCATTACAGA--TTAAAAAATAATGCCAGTGATCTAAATTTTTACCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATTC--ACCG---CGA--AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACTT--A--GAAACAAT-GATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-TATAC-AT------T--GTCAACTTAGAAATAATG-CAAGCAA----TTTAAA-TGTAGATCTTtaccagcatgaaca
gi|3 : agaaagtaaattatatctTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACTTTAA--GACATAAT-GATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--CA-----TAATTTAAAACTGCTTTG----------TAAAA-GA--------------T-GTA---------TTGCTT----------G-AA-AC-CTAA-TAGA--AT------TT-GTCAACTTAGAAATAATG-CAAGCAA----TTT-AA-TGCAGATCTTAAAAA------CTACT--TCT-----------TGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--CA-----TCATTTAAAACTGCTTTG----------AAAAA-CATGTATTGCTTGAAAC-GTAATAAACATTTTGATT-------ATGGTAA-ACGCAAAGTAAAT-ATCTTACATT-GTCAACTTAGAAAAAATG-CAAGCAA----TTTAAA-TGCAGATCTTAAAAA------CCACT--TCT-----------TACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAAT-GCTTTAAAATATTGTTTGAAA-TA--------------TAGTAAACGAT---TTCATTTTCGTAAATGC-AA-AA-CAAA-TATTC-AA------TT-GTCAACTTAGAAAAAATG-CACTCAA----TTTGAA-TGCATATCTTAAAAA-------CACT--TCT-----------TGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 11 22222 1 55555555555 11 1 0000000000000000000000000000000000000000000 2222 222222222222222 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 5555555555555555 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 33 55555 0 00000000000 00 0 7777777777777777777777777777777777777777777 0000 8 1 3 333333333333333 8 1 9 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. .. ..... . ........... .. . ........................................... .... . . . ............... . . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 0000000000000000 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88 00000 5 22222222222 88 0 5555555555555555555555555555555555555555555 0000 0 0 2 888888888888888 0 0 6 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--CA-----TCATTTAAAACCGCTTTG----------TAAAA-TAT-GTACTGC--GA-AC--AATA--AAC--TTTGATT-------ATGGTAAA--C-CAAA-TANACAT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACAATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--CA-----TCATTTAAAACCGCTTTG----------TAAAA-TAT-GTA----------------A--GAC---TTGATT-------ACGG-AAA--C-CAAA-TANACAT------T-TGT----CAACTT-AGAAANAATGCAAGCAATTTGAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTACA-----TCATTTAACACCACTAT-----------TAAAATTAT-GTACTACAAAATACCAAATA--AACTGTTTAATC-------ATGGTAAATGC-CAAG-TAAACAT------TCTGCATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-TATACAT------T--GT----CAACTT-AGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaaagtaaattatatctTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--CA-----TAATTTAAAACTGCTTTG----------TAAAA-GAT-GTA-------------------------TTGCTT----------G-AAA--C-CTAA-TAGA-AT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTT-AATGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--CA-----TCATTTAAAACTGCTTTG----------AAAAA-CAT-GTATTGCTTGAAACGTAATA--AACATTTTGATT-------ATGGTAAA--CGCAAAGTAAATATCTTACAT-TGT----CAACTT-AGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAAT-GCTTTAAAATATTGTTTGAAA-TATAGTA----------------AACGAT---TTCATTTTCGTAAATGC-AAA--A-CAAA-TATTCAA------T-TGT----CAACTT-AGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 22222222 11 1111 000000000000000000000 444444444 222222222222222 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 8888888888888888 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 88888888 44 22 1111 55 444444444444444444444 0 777 2 666666666 8 1 3 333333333333333 8 1 0 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. ........ .. .. .... .. ..................... . ... . ......... . . . ............... . . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 5555555555555555 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88888888 55 00 8888 22 555555555555555555555 2 555 5 555555555 0 0 2 888888888888888 0 4 8 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAA--CG-----CAAA-TANACAT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTACTGC---GA---AC--AATAAAC--TTTGATTATGGTAAA--C------CAAA-TANACAT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTAC-----ATCATTTAACACCACTAT-TAAAATTA-TGTACTAC---AAAATACCAAATAAACTGTTTAATCATGGTAAATGC------CAAG-TAAACAT------TCTGCATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-TATACAT------T--GT----CAACTT-AGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaaagtaaattatatctTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--C-----ATAATTTAAAACTGCTTTGTAAAA-GA-TGTATTGC----------------------TTGA--------AA--C------CTAA-TAGA-AT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAA-TGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--C-----ATCATTTAAAACTGCTTTGAAAAA-CA-TGTATTGCTTGAA---ACGTAATAAACATTTTGATTATGGTAAA--CG-----CAAAGTAAATATCTTACAT-TGT----CAACTT-AGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA-TGCTT--TAAAA-TATTGT-TTGA---AAT--AT--AGTAAACGATTTCATTTTCGTAAA--TGCAAAACAAA-TATTCAA------T-TGT----CAACTT-AGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 22222222 11 1111 777777777777 11 11 1 444444444444444 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 8888888888888888 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 88888888 44 22 1111 3 000000000000 0 11 0 777 2 22 0 8 1 6 000000000000000 8 1 0 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. ........ .. .. .... . ............ . .. . ... . .. . . . . ............... . . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 5555555555555555 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88888888 55 00 8888 2 000000000000 8 00 2 555 5 55 0 0 0 4 888888888888888 0 4 8 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAACAT---A--T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TANACAT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTAC-----ATCATTTAACACCACTAT-TAAAATTA-TGTACTAC---AAAATACCAAATAAACTGTTTAATCATGGTAAATGCC-AAG-TAAACAT------TCTGCATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-TATACAT------T--GT----CAACTT-AGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaaagtaaattatatctTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--C-----ATAATTTAAAACTGCTTTGTAAAA-GA-TGTATTGC----------------------TTGA--------AAC--C-TAA-TAGA-AT------T-TGT----CAACTT-AGAAATAATGCAAGCAATTTAA-TGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--C-----ATCATTTAAAACTGCTTTGAAAAA-CA-TGTATTGCTTGAA---ACGTAATAAACATTTTGATTATGGTAAACG-C-AAAGTAAATATCTTACAT-TGT----CAACTT-AGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA-TGCTT--TAAAA-TATTGT-TTGA---AAT--AT--AGTAAACGATTTCATTTTCGTAAATG-CAAAA-CAAATATTCAA--T-TGT----CAACTT-AGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 22222222 11 1111 777777777777 11 11 1 1 555555 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 8888888888888888 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 88888888 44 22 1111 3 000000000000 0 11 0 777 2 22 0 0 9 444444 1 0 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. ........ .. .. .... . ............ . .. . ... . .. . . . ...... . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 5555555555555555 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88888888 55 00 8888 2 000000000000 8 00 2 555 5 55 0 0 6 888888 4 8 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAATATTCT-CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAACAT-----ATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTAC-----ATCATTTAACACCACTAT-TAAAATTA-TGTACTAC---AAAATACCAAATAAACTGTTTAATCATGGTAAATGCC-AAG-TAAACATTCTGCATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatccccATAC-----ATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaaagtaaattatatcttTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--C-----ATAATTTAAAACTGCTTTGTAAAA-GA-TGTATTGC----------------------TTGA--------AAC--C-TAA-TAGA-AT------TTGTCAACTTAGAAATAATGCAAGCAATTTAA-TGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--C-----ATCATTTAAAACTGCTTTGAAAAA-CA-TGTATTGCTTGAA---ACGTAATAAACATTTTGATTATGGTAAACG-C-AAAGTAAATATCTTACATTGTCAACTTAGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA-TGCTT--TAAAA-TATTGT-TTGA---AAT--AT--AGTAAACGATTTCATTTTCGTAAATG-CAAAA-CAAATATTCA--ATTGTCAACTTAGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 22222222 11 1111 777777777777 11 11 11 44444444 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 8888888888888888 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 88888888 44 22 1111 3 000000000000 0 11 0 777 2 22 8 8 11 33333333 1 0 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. ........ .. .. .... . ............ . .. . ... . .. . . .. ........ . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 5555555555555555 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88888888 55 00 8888 2 000000000000 8 00 2 555 5 55 0 0 88 88888888 4 8 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTAC-----ATCATTTAACACCACTAT-TAAAATTA-TGTACTAC---AAAATACCAAATAAACTGTTTAATCATGGTAAATGCC-AAG-TAAAC-AT-TCTG---CATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-AAG-TAAATTATATCTTATACATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--C-----ATAATTTAAAACTGCTTTGTAAAA-GA-TGTATTGC----------------------TTGA--------AAC--C-TAA-TAGA--AT-T---------TGTCAACTTAGAAATAATGCAAGCAATTTAA-TGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--C-----ATCATTTAAAACTGCTTTGAAAAA-CA-TGTATTGCTTGAA---ACGTAATAAACATTTTGATTATGGTAAACG-C-AAAGTAAAT-AT-CTTA---CATTGTCAACTTAGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA-TGCTT--TAAAA-TATTGT-TTGA---AAT--AT--AGTAAACGATTTCATTTTCGTAAATG-CAAAA-CAAAT-AT-TC-----AATTGTCAACTTAGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 11111111111111 222222222222222222222222222222222222222222222 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 22222222 11 1111 777777777777 11 11 11 44444444 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 0 1111111 99999999999999 3 7 3 000000000000000000000000000000000000000000000 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 8888888888888888 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 88888888 44 22 1111 3 000000000000 0 11 0 777 2 22 8 8 11 33333333 1 0 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . . ....... .............. . . . ............................................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. ........ .. .. .... . ............ . .. . ... . .. . . .. ........ . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 7 7777777 88888888888888 7 8 2 000000000000000000000000000000000000000000000 8 000000000000000 7 0 3 0 0 7 888888888 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 5555555555555555 0 5 444 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88888888 55 00 8888 2 000000000000 8 00 2 555 5 55 0 0 88 88888888 4 8 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATTAGATAGTCATGAAAAGATAGTGATGAAAAGACATT-------T-----A------ATATACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaGATAGTG-------AT--G------AAAAGA--CATCTA----ATATAC-CG----G------------------T--------------------AC----TAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT-T------CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTAC-----ATCATTTAACACCACTAT-TAAAATTA-TGTACTAC---AAAATACCAAATAAACTGTTTAATCATGGTAAATGCC-AAG-TAAAC-AT-TCTG---CATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaatatacnttgaagaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTTGGATATTCATGAAAAGGCA---------------T-------CAAGTAG------AC----TAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC-T------TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-AAG-TAAATTATATCTTATACATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATTAAATATACACAAAA--------------------C-------C-----G------AT----TAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA-C------TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--C-----ATAATTTAAAACTGCTTTGTAAAA-GA-TGTATTGC----------------------TTGA--------AAC--C-TAA-TAGA--AT-T---------TGTCAACTTAGAAATAATGCAAGCAATTTAA-TGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATTATATATACTTGAGAAG------------------G-------C-----ATAAGATAT----TAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--C-----ATCATTTAAAACTGCTTTGAAAAA-CA-TGTATTGCTTGAA---ACGTAATAAACATTTTGATTATGGTAAACG-C-AAAGTAAAT-AT-CTTA---CATTGTCAACTTAGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA-TGCTT--TAAAA-TATTGT-TTGA---AAT--AT--AGTAAACGATTTCATTTTCGTAAATG-CAAAA-CAAAT-AT-TC-----AATTGTCAACTTAGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATTAAATATACTCAAAAAG------------------CATCAAGAC-----G------AT----TAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC-C------TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
blockSeqs : . A A T T T C ATC T A GAA CAGAACTCTTAGAAA TATAA TTAA AC T T TT T CATCAAA TACCGTATAATATT G A A GCATCAAGTAGAC T AATGCTGAAATATAA C A T A G A CGTCAATAA A T T A CT G A T GGACAGAA AA A A C T G CATG A CTTTAGCCAC AGTTC T A C C TGGT C TGA T A T C GCT CC TC T AA T CC TTAAGACATAATG T C A T T AAA T T TCAATTTC C G . A ACATTATAGAAGTCTTCCTTCA CAGTCA CT TG TAT A TTGAAACGT AT TTA G G A G TT ATCTTATA T A CT G TGTG A CTTAT AT A A . T AC CC TTCAG AGA T T . A C C . T TACATGC G GAA T . A TT T . GG
blockSeqs : . A C A A A . ATC . . . . TA A . A T . A . AAAAGA A A A CATCAAGACGAT T TA . A T A G . TT T A A G CA A A A TA . T T . . G . C AGTTAC . A T A A CCAA C CAA . A T C . TC TC A TA T . TAGAAACAATG C C G T A TGG G . A G G . A ACGCACAAGAAG C CT TG GA A AATAT GA TTT C G . . T CTTA T A CC G T A CTTTT . A T . T TC . TTCAG . T A . T C T . T T G A T . .
blockSeqs : . G T C A A . AT . . . . TA C . A G . A . AGGTCA T T A GCATAAGATAT T CT . T A C C . CT T T A A CT T . G TG . T A . . T . A . . A A T . . . . . T . . . . AT T T . . CACCGCGAA G . A T T AGG A . A G G . A ACCTTCA C T . CA . . . . . . . . T TC A A C . G C . . A T . A . . TG . T T . G C T . C A G .
blockSeqs : . . C T A A . AA . . . . . T . A T . G . AAAACT A T . CCGAT A CG . T A C T . AC T A G T T A . A . . A . . T T AGG A . T A A . . . . . T A
blockSeqs : . T T T . T . . . AAAA . . . TAC C CA . T A C C . CC . . . . . . . . .
blockSeqCons : ** GCATAAGNGAC********************************** CC******* A** ****
originalCons : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAG------------------T-------C-----G------AT----TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC-T------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
finalCons : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATTAGATATACACGAAAAGGCATAAGNGAC----------------------------------TAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATCC-------TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCAA--TAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT
Alignments
lowQualScore : 11 1 1 1111 111 555555555555555 11111 1111 11 11 2222222 22222222222222 333333333333 11111111 555555555555555555 444444444444444 222222222 8888888888888888888888 11 1111 55555555555555 22222 1 1111 1 111 222 11 3333333333333333 111 1 22222222 1111 8888888888888888888888888888888888 22222222 11 1111 777777777777 11 11 11 44444444 7777777777777777777 2222222 11 1 11 11 11111111 111 1 1 3333333 222 1 1 1 11
lowQualScore : 11 0 0 1 3 1 1 1 6 4444 6 6 444 000000000000000 55555 5555 11 1 1 11 1 6666666 77777777777777 99 444444444444 88888888 111111111111111111 4 111111111111111 6 1 1 1 1 6 666666666 7 1 1 4 44 0 1 3 1 5555555555555555555555 33 0 1 1 6 0 6 7 4444 0 1 66666666666666 55555 1 1 0 1 0 2 0 6666 2 555 0 1 9 2 777 777 77 1 44 3 33 8888888888888888 1 2 222 3 1 0 444 2 8 77777777 3 3 7777 5 4444444444444444444444444444444444 88888888 44 22 1111 3 000000000000 0 11 0 777 2 22 8 8 11 33333333 1 0 3 99 6 0 7777777777777777777 0 1 3333333 33 2 1 0 0 9 00 33 99999999 0 777 0 3 1 0 6 2 1 0 4 5555555 2 0 777 7 3 2 22 1 5 77
lowQualScore : .. . . . . . . . . .... . . ... ............... ..... .... .. . . .. . ....... .............. .. ............ ........ .................. . ............... . . . . . . ......... . . . . .. . . . . ...................... .. . . . . . . . .... . . .............. ..... . . . . . . . .... . ... . . . . ... ... .. . .. . .. ................ . . ... . . . ... . . ........ . . .... . .................................. ........ .. .. .... . ............ . .. . ... . .. . . .. ........ . . . .. . . ................... . . ....... .. . . . . . .. .. ........ . ... . . . . . . . . . ....... . . ... . . . .. . . ..
lowQualScore : 00 8 8 4 5 8 0 0 7 5555 7 7 000 000000000000000 88888 4444 00 4 0 00 0 0000000 11111111111111 22 222222222222 00000000 000000000000000000 8 000000000000000 7 0 3 0 0 7 333333333 5 4 0 6 66 8 4 2 0 5555555555555555555555 88 8 0 4 7 7 7 8 2222 2 0 55555555555555 00000 0 0 2 2 2 8 2 8888 5 222 0 0 8 5 555 000 55 0 55 2 88 5555555555555555 0 5 888 2 8 7 000 0 0 22222222 2 2 0000 6 5555555555555555555555555555555555 88888888 55 00 8888 2 000000000000 8 00 2 555 5 55 0 0 88 88888888 4 8 2 00 5 8 0000000000000000000 8 0 5555555 88 0 0 2 0 8 00 88 55555555 2 555 2 2 0 0 5 5 2 0 2 2222222 5 8 000 3 3 0 00 0 5 55
consensus : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAANCA--CATATATT--AGAT------------ATA--C--ACGAAAAGGCA--TC-AA------G-N-NACTAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC--C-----TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--GTAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
Reference ( family-2875 ) : TAAAACAA--TCAATTTAGATTTCACGAGAAAACACATTNCTCATCCNAGAATAAGATTTGG-T-AT-A-A-TGGTTCT---ATAGTCAGCG---------------ATGTCAATA---GTTATACTC---ATT--TGGGAATAATTTTTCA--GTCNGATGGCG-------GTTGG------AAAACA--CATATATT--AGAT------------ATA--C--ACGAAAAGGCA--T--AA------G-N-GACTAAACATTTCGCG-----CG--------TGCTGAAA-TATNCACTAAACNGNC-AATC--C-----TTGATTAAAATTTATTNCTCTTTTATTCGTCTTATTTTGGAGTATGCTAATNCAGTGTG---------T------A-----AG--AGAAGCCAATTTACTAGAGAATGTACAGGTTACTGCAGCAAGAATAATCACTGG-AACGAGA-ATGAATTCTTC----CAGAACAGCACTGTATAATGAATTAGGNTGGGATANTTTAG-CAC----TAGAAGAAAAG-----TTCATAANCTNATCTTATTTTACAAAATAGCTTATGGCATCGCTCCCCGATATCTTCGAGA-ACTTTNGATACCTTA---CACA-T-CCNCCNCAATATTCATAT--ACT--T--AG-A-ACGATGATAGTNTCA--ATAAATTTATTCCTCCTCGAGTTAGGACCGCATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ACCTACCAATAC-----AC---------------CTTC--A-----CTTT--C-----ATCATTTAAAACCGCTTTGTAAAA-TA-TGTATTGC---AA---AC--AATAAACGNTTTGATTATGGTAAACG-C-AAA-TAAAT-AT-TCT----CATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTGCGTGGTTATTTTCT---------------T---TGTGATAAATGTGGNCACCACACTGAAAATGC-TT-T-CATTTTTTCT--TCGANTGTCCTGAGTTTGC-TGACCATAGAACTATTT--TAGTTTCAG---CTCTC---AACGAAATGCAACTTGCNG-TTCCCGTATCACTTAATCTACTT-TTACGTGGTGATA-----ACGTGTCTAAATTTTAAAGTCAATG--AAAGATTTTTGATATTGTACAG-AAATGATANNCNGGAACACGGAAAGGTTTCCAT
gi|1 : AGAAAA-----TTCTTTTCCTAAAGTAAAATTTGG-TCAT-A-A-TGGTCCT---TAAGTTATCA---------------ATGCAGAAA---GTTATACGC---ATT--TAGGATTAAAATTTCA--GTGTAATGGCA-------GTTGG------GAGTCA--CATATATT--AGATAGTCATGAAAAGATAGTG--ATGAAAAGACATTT--AA------T-A-TACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACNTTGAAGAGAT-AG-----------TGATGAAAA
gi|1 : ctgaA--TATACNTTGAAGAG------------ATA--GTGATGAAAAGACA--TCTAATATACCG-G-TACTAACCATTTTGCA-----TA--------TGCTGAAA-TATACTCTAAATAGGC-AATT--T-----CTGAT--AAATTTATTTTTCTTTTATTCATTATATTCTGGAGTATGGAAATCCAGTGTGGGACAATTGT------ACAGAAAG--AGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCAGCAAGAATAATCACGGG-AACGAGA-ATAAATTCTTC----TAGATCAGCACTGTATAATGAATTAGGCTGGGATATTTTAGACACTAGTTAGAAGAAAAG-----TTCATAATCTTATCCTATTTTACAAAATAGCTTATGGCATTGTTCCCCAATATCTTCAGGA-ACTTATGAAACCTTG---CACA-T-CCA-CAAAACATCTATCC--ACTAAT--AG-A-A-------AGTATCATGGCAGAGTTATCCTCCCTCAAGTTAACACTTCATCATATACGAACAG-CTTTAT--A-----CCTTCAGCAATCA-ATCATGGAATGATTTACCTATCCATATTAGAAAT---------------CTCCCTA-----CTTTTAC-----ATCATTTAACACCACTAT-TAAAATTA-TGTACTAC---AAAATACCAAATAAACTGTTTAATCATGGTAAATGCC-AAG-TAAAC-AT-TCTG---CATTACAGATTAAAAAATAATGCCAGTGATCTAAAT-----TTTTA----------CCTACATGGTCATTTTCTAAGAGATGATGCTACT---TGTGATATGTGTGGTCACCCTACTGAAAATGCATT-T-CATTTTTTCA--TTGAATGTGTTCAGTTTTCATAACAA-AGAATTACTT--TAAT---AGAGTCTATC---AACCAAACGCATC-TGCAGATTCCTCTATCA-TTAAAGTAGTTACTGAGTGGTAATG-----AAAT-TCTTGAGTTCAAAGACAATGT-AAAGATTTTTGA-ATTGGAAAGCAAGTGATgacatctaatataccggtactaaccattttgcatatgctgaaatatactctaaataggcaatttctgataaatttatttttcttttattcattatattctggagtatggaaatccagtgtgggacaattgtacagaaagagaagccaatttactagagaatgttcaggttactgcagcaagaataatcacgggaacgagaataaattcttctagatcagcactgtataatgaattaggctgggatattttagacactagttagaagaaaagttcataatcttatcctattttacaaaatagcttatggcattgttccccaatatcttcaggaacttatgaaaccttgcacatccacaaaacatctatccactaatagaaagtatcatggcagagttatcctccctcaagttaacacttcatcatatacgaacagctttataccttcagcaatcaatcatggaatgatttacctatccatattagaaatctccctacttttacatcatttaacaccactattaaaattatgtactacaaaataccaaataaactgtttaatcatggtaaatgccaagtaaacattctgcattacagattaaaaaataatgccagtgatctaaatttttacctacatggtcattttctaagagatgatgctacttgtgatatgtgtggtcaccctactgaaaatgcatttcattttttcattgaatgtgttcagttttcataacaaagaattactttaatagagtctatcaaccaaacgcatctgcagattcctctatcattaaagtagttactgagtggtaatgaaattcttgagttcaaagacaatgtaaagatttttgaattggaaagcaagtgat
gi|10 : ctgaagaaaattcttttcctaaagtaaaatttggtcataatggtccttaagttatcaatgcagaaagttatacgcatttaggattaaaatttcagtgtaatggcagttgggagtcacatatattagatagtcatgaaaagatagtgatgaaaagacatttaatatactaaccattttgcatatgctgaaGTTTCTGCTACAAGAATAATTACTGG-AACGAGA-ATGAATTCTTCCATGCAGAAGTGCACTATTTAAGGAATTGGGATGGGATAAGTT----AC----CAGAAAAAAAGAGTTCTTCATGTTTTAATTTCATTCTATAAAATTGTTTATGGCATCGCACCTGGTTATCTTTGAAATATTTTAGA-A--TTA---TACACC-CCTCCTCAAT-TTCA-AT--ATT--C--AC-C-GCGA-AATATTTTCA--ATCAA-----------TCAAGTT----CC------TATATAAATAGTCTTTTTTCAATTTCCTCTCTACTGCTAGAATATGGAATG----ACCCGCCA
gi|14 : actaAAATTACTAGAGGATGTACAGATTGAAGCAGCTAGAATAATTACTGG-AATGAGATAT-AATTCTTC----AAGAA
gi|2 : gctgatgttgtatgggatgggtgcagtccaagattcaAAACAACATCAATCTAGATATCACTAAAAAAAGCATTTCTCATCCTAAAGTAACATTTGGCT-AT-A-A-TGGTCCTGAAATTGTCAGTGCAGAACTCTTAGAAAATGACAATATAAGTCAAAATTTAAATTACTGGCATTAATTCTTAATTGTGTGATGGCA-------GTTGG------AGGTCA--TATATCTT--GGAT------------ATT--C--ATGAAAAGGCA--TC-AA------G-TAGACTAAACATTTTGCGAATGCTGAAATATAATGCTGAAA-TATACTCTGAATAGGT-AATC--T-----TTAATAAAAATTTACTTTTCCTTTATTCATCTAATTCTAGAGTATGCTAATTCAGTGTG---------GGACAGAA-----AG--GGAAGCCAATTTACTAGAGAATGTTCAGGTTACTGCTGCAAGAATAATCA-TGGCAATGAGA-ATGAATTCTTC----TAGATCAGCACTGTATACTGAATTAGGCTGGGATACTTTAGCCAC----TAGAAGAAAAG-----TTCATAAACTTATCTTATTATACAAAATAGCTTTTGGTATAGCTCCCCAATATCTTCAAGA-ACTTTAGATGCCTCAGCTCGCA-TCCCTCCACAAAACTCATATCCACT--T--AGAA-ACAATGATGGTCT-----TAAATTTATTCCTCCTCAACTTAAAACTTCATGGTgtaaattgtacacag
gi|21 : taaatcatcaaagtacaggtattctgtttaagttaaaacagtgtggtatgtctgaacaggttgttaattgggttgaaaactacttatccaatagatctcaggaagttgtcttagatggatttacttcttcttctagaattacaaactctggcgttcttgctatatataaatgatctatcaaatagtgttagactatttgcagatgacacttctttgcatattattgttgatgaagatacaataagtacagctaattcactaactattgatctagctagtgatcttgagaaaataaagaaatggtctatgaaataggttgtggattgtaatcccc-AAG-TAAATTATATCTTATACATTGTCAACTTAGAAATAATGCAAGCAATTTAAATGTAGATCTTtaccagcatgaaca
gi|3 : agaTGAAACAA--TCAATTTAGATTTTACAAGAAAACACAATACTCATCCAAGAATAAGATTTGG-T-ATCA-A-TGGTTCT---ATAGTCAATG---------------ATGTCAATA---ACTATACTA---ATT--TGGGAATAATCTTTCA--GTCAGATGGTG-------GTTGG------AAAACT--CATATATT--AAAT------------ATA--C--ACAAAA---C----------------C-GATTAAACATTTTACG-----CT--------CACTAAAA-TATTCACTAAACCGCC-AATA--C-----TTGGTTAAAATATATTACTCCTTTATTCGCCATGTCTTGGAATACGCTAATATAGTGTG---------T------A-----AG--AGGAACC--------------TGTACAGGTCACTGCAGCACGTATAATGACTGG-ACTGAGG-ATTAACTCTTC----CAGAACAGCACTTTATCATGAATTAGGATGGGATG--------------TCGAAGAAAAA-----TTCCAAAACTAACATTATCTTCCAAAATAGTTTATGGAAT---TCC-----AT------GA-ACTATTGCTACCATA---CACA---CCATCTCAATATTCATAT--ACT--TTAAG-ACATAATGATAGTGTCA--GTAAATTTATTCCACATCAAGTTTGGACCGCATCGTGTATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTACCAATAT-----AC---------------CTTC--A-----CTTT--C-----ATAATTTAAAACTGCTTTGTAAAA-GA-TGTATTGC----------------------TTGA--------AAC--C-TAA-TAGA--AT-T---------TGTCAACTTAGAAATAATGCAAGCAATTTAA-TGCAGATCTTAAAAACTACTTCTTGCGTGATGATTCTCT---------------T---TGTGATAAATGTGGACACCACACTGAAAATGC-TTAT-CATTTTTTCT--TCAAATGTCCTGCGTTTGC-TGACCATAGAACTATTC--TAGTTTCAG---CTCTC---AACGAAATGCAACTTACTG-TTCCCATATCACTTAACCTACTT-TTATGTGGTAAT------ACGTGTCTAAATTTTAAAGTTAATG---ATTTTTTTTGATATTGTACAG-AAATAATAAACAGGAACACAGAAA--TTTCCAT
gi|4 : TAAAACAA--GCAATTTAGATTTTAAAAGAAAATATACTATTCATCTAAGAATAAGATTTGG-T-AA-A-AATTGTTTA---ATAGTTAGCG---------------ACGTCAATA---GTTACACTC---ATA--TGGGAATGTGTTTTTA--GTCAGATGGTG-------GTTGG------AAA--A--CATGTATT--ATAT------------ATA--C--TTGAGAAGGCA--T--AA------G-A-TATTAAACATTTAATG-----CG--------TG-TAAAACTACTTATTAAACCGTCAAATCGTCAATAATTGATTAAAGCTTATTACTCTTTTGTACAT-TTATTT--GATCATGCT--TGCAGTGGG---------T------G-----AGAAAGAAACCAATCTATTAAAAAATGAACAGGCCACTGCATCATGTATAATCACTGG-ATTGA-A-GTAACCTCATC----CAGAA
gi|5 : aaggtctacaaagttaggtgttctacagggacctgttttaggaccctttatgttcttatgcattaatgacatctctgaaaattgacgaaatcaatttagattatttttcgatgactcatccagttatgctattgttgatggcgatgtacaatgtaattggttcagcaaattcacttcctagtaaacttaaatttataaataaaatgggtgattgattttaaccctaaA--ATAATTTTATTCCTCCTCGAGTTAGGACCACATCGTATATGAATAG-CTTTCT--A-----CCGTCCACTATTAGATTATGGAATG----ATCTTCCAATAC-----ACATTATAGAAGTCTTCCTTC--A-----CTTT--C-----ATCATTTAAAACTGCTTTGAAAAA-CA-TGTATTGCTTGAA---ACGTAATAAACATTTTGATTATGGTAAACG-C-AAAGTAAAT-AT-CTTA---CATTGTCAACTTAGAAAAAATGCAAGCAATTTAAATGCAGATCTTAAAAACCACTTCTTACGTGATTATTTGTT---------------TGTGTGTGATAAATGTGGACACCACACTGAAAATGC-TT-TTCATTTTTTTTATTCAATTATCCTGAGTTTGC-TGACCATAGATCTATTT--TAGTTTCAG---CTCTC---AATGAAATGCAACTTACAG-TTCCCTTATAACTTAATCTACTT-TTATATGGTGATACATGCACATGTCTAAATCTTAAAGTCAATGGAAAAGATCTTTGATGCTGTACAG-AAAT-ATATTCTGG-ACACGGAAAGGTTTTTATt
gi|6 : tTTTATCACTCCTCGAGTTAGGACCACATCGTATATGGATAG-CTGTCT--T-----CCATTCACTATCGAATTATAGTACT----ACTTACC--TAC-----AC---------------GCAC--AAGAAGTTTT--CAGTCAATCGTTTGAAA-TGCTT--TAAAA-TATTGT-TTGA---AAT--AT--AGTAAACGATTTCATTTTCGTAAATG-CAAAA-CAAAT-AT-TC-----AATTGTCAACTTAGAAAAAATGCACTCAATTTGAATGCATATCTTAAAAA-CACTTCTTGC-TAGTTATTTTTT---------------G---TGTCATGACTGTGGCCACCATGATGAAAAGA--------ATTTTCTTT--TCAGTTTTCCTGAGTTTGC-TGATCAAAGA--TATTTCCTAGTT---G---TTTTTAGAAAAGAAATACAACTTGCTG-TGCTTGTATCACGGAATCAACTT-TTACATTGTGA-A-----ACGTGTCTAAATGTTAAAATCAATA--AAaaat
gi|8 : TAAAACAA--TCAATTT-TACTTCACGAGAAAACACATTAATCATCCAGGGAAAAGGTTTGG-T-ATCA-A-TAGTTCT---ATAGTCAGCA---------------ATGTCAA------TCATACTT---ATT--TTGGAAGAATTTTTCA--GTCGAATCGTGCATCAAAATTGGTACCGTATAATATTTATATATT--AAAT------------ATA--C--TC-AAAAAGCA--TC-AA------GAC-GATTAAACATTTCACG-----CA--------TACTAAAA-TATTCATTAAACCGCC-AATC--C-----TTTGTTAAGATATATTGCTCTTTTATTTTTCTTGTCTTGGAATATGCT
gi|9 : ttttgtattttacttgatggtgatatgataagctcagcaaattcactaactaatgaccatgacctttgatttatacatcaatagtctaaaacaagggaccatggatttcaatccaaaAA--TTGATTTAGAAT-CAC---AAAA-ACATTTCTCATCCTAGAATAGAATGTGG-T--T-ATA-CGGTTC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGATGTTTCTTGTATAACATTAGTTTGCAGCCAAATAATCAATCACTAAGTTACAGCTGAATTCAACTGCCACTACAGTGATCTAAGAGAAAGATAAGCATGGTCCTAATGAAATGGGCTTGCTAATCAATTAAGACCAGCCAAAAACAGTCACTCTAGATATCACTAGAAAAAGATCATTTTCCATACCCATTTCCTCCAAAGTAAAGAAATATTTTATGAGTTAATAGATAACCTGCTCCTGAATTGTCCATAATGGCAAAAAGCTGCATCACGCTATTGTTTAGGATATAAAGTTTTTCAGGGTGGTGATGGGCATGTTGGAGGTTCACTTGAGTGAATCCTCATGTGGATATTCAAAATAATACTGGAAAGGACAGTATAGACTAAAGTCATTTGTAGTGGTGCGAAGTGGAA
Unaligned ( gi|11 ): AAATATATATAATATAATCATCGTAAATGCAGAGAAAATGTCTACCATTGCCAATGGTTGCTAGTAATTTAGATTAAAACCTACATGGTCATTTTATAAGAAAATGCTACTTATGTTTTAATGCGTTCAGTATTTGGGGAAAAAATACTCTGTTGGAATATATTAATGTATGCTAATGTAAATTCCTCTATCATTGAAGTTGTTAGTAGATAGTGACGAGATTCTTAGATTCTAAGATGGTGTGGGAATTT
Unaligned ( gi|12 ): TATCGAAACAAAATATAAAATGGGTTGAAAAATATCTGACTAACAGGTCACAACGAGTAGTCTTAAACGGATTTACCTCTTTTTCAAGATCTCCATATATCAGGTGTTCCTCACGGATCTGTTCTAGGACCATTGTCGTTCTTATTATATATCAATGAGATCTCTAAAAATTTACAAAATCATA
Unaligned ( gi|13 ): TTAGGATAAAATAAATTATCATAGAGAGGAAAAAGCTCATTGCAATAATAAAATAGTAAAGCGCCTGGTTATCTTCTGAATATTTTAGAATCATACACCTCCTTCCTTCCTCACTCTCAATATTCACTGGGATATCATT
Unaligned ( gi|15 ): GCTGATGATACATCCTTTTGTATTTTAATTGATGGTGATATAATAAGCTCAGCAAATTCACTAACTAATGACCATGACCTTTGATTTATACATCAATAGTCTAAAACAAGGGACCATG
Unaligned ( gi|16 ): TTAGATGGGGGCGGAGCTAATTTCACGGATTTGTTCTAGGACCATTGTCGTTCTTATCAAATATCAATGAGATCTCTGAAAATTTACAAAATCATAGGTTAGCTTATTTGCTGATGA
Unaligned ( gi|17 ): AAATACATAAAGGTGTTAACTATGACGTTTCATTCTGGCATTTTTCATCAAGCGCATTAGTCCAAGATGAAATATTTGTTTTACATTCATTTCTGTCGG
Unaligned ( gi|18 ): TGTCCAAACAAATTATAAAATGGGTTGAAAACTATCTGACTTTAAAGACCGAGATTTTCGACCCACCGGTTTATACCTCAGGTAAG
Unaligned ( gi|19 ): GAATATCCTGATGTTGTGTGGGATGGATGTATCTTAAAAAATTGAAAACTATTAGATGTACAAATTGAAGCAGCAAGAATAATTA
Unaligned ( gi|20 ): ATGGGATGGATTTAACCTACAAGATTCGATATTACAAAAGATGTACAAATTGAAGCAGCTTGAATAATT
Unaligned ( gi|22 ): TAGTTACAGTGAGCAGTGTACAGATCTACAGCTACTGTACACTGAACATTCAGGAAG
Unaligned ( gi|23 ): CATATCTATAGCAGCAGGATTTCACTATACATCT