lowQualScore : 1 1111 4444444444 1111 333 11 222 1 33333 3333333333333333 1 22222 66666666666666666 1 111 111111 333333333333333333 111111 222 1 111111111 666666666666666 22 44444444444444 2 333 333 5555555 11 444444444 11111 4444444444 11 1111111 222 1 1111 1111 333
lowQualScore : 1 9 5 5 5555 5 5 66 3 0000000000 4 0000 888 333 4 9999 4 77 888 111 0 7 5 99999 2222222222222222 0 5 5 5 5 99999 2 5 99999999999999999 5 5 0 888 5 111 4 2 222222 666666666666666666 66 222222 555 2 777777777 999999999999999 33 5 5 5 66 55 99999999999999 6 888 4 444 44 2 222 777 9999999 5 8 66 2 2 000000000 00000 55 9999 3333333333 4 0 55 4 4 4 1 99 3333333 888 3 999 3 55 3 999 55 3 2 44 4444 1111 333 3 7
lowQualScore : . . . . .... . . .. . .......... . .... ... ... . .... . .. ... ... . . . ..... ................ . . . . . ..... . . ................. . . . ... . ... . . ...... .................. .. ...... ... . ......... ............... .. . . . .. .. .............. . ... . ... .. . ... ... ....... . . .. . . ......... ..... .. .... .......... . . .. . . . . .. ....... ... . ... . .. . ... .. . . .. .... .... ... . .
lowQualScore : 7 0 0 7 6666 0 0 99 2 7777777777 4 6666 888 888 4 4444 4 88 888 444 1 4 0 11111 1111111111111111 1 0 0 0 0 55555 5 0 22222222222222222 0 0 0 888 0 111 4 2 888888 777777777777777777 11 888888 777 8 111111111 000000000000000 55 1 0 1 99 55 44444444444444 8 333 0 444 99 4 888 000 1111111 7 9 11 2 9 555555555 00000 55 4444 9999999999 0 8 55 0 0 0 6 44 6666666 111 6 444 6 00 6 666 00 3 0 22 4444 4444 666 6 3
consensus : TTTTTTTTTATTTTCACGTCA-TAAA-TATTTT-G-CAGATCGTTTTT--CAGAAAACGA-----AT---ATAT-TGCATCA----TCA---GTTCGTTTT-GGAA-AGGAAT----AAA-CCAGTAATGACAC---TTN-NATTTTACAT-ACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTAC-ACCCA-T--GAA-------AT-TA-CGT-AT---TATG-C-G-GACA-TGTATATGTAT------AGTAC-----------------GGGCAG--AATC------AATTT-CGTTTTGTCAAA-------A-ATAC-CNGC-A-T--C--GTTCCGGAAATTT-TAGTAAACGAC--CTTCAC--CTC--ATC-ATC-ACC-GTTGTCCA-ATTC-G-TT-TTAAAA-TTA-TGGATTAATCCT-TAGTGTGGC---ATAA-A-CCA-TNTT-TTTTAAAGGTGCGTN----TTTGAATG-----AAT--ACTG----ATT--ATTTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-AAAGCTTTG----AA-TGTTC-AT-TAAAC-AACC-C--AT-ATC-A--AA-TTGGCCTTT--TCA--NCGGCGAGA----ATT-NTTTACA-ATGG-ATGCTAG
Reference ( gi|4 ) : TTTTTTTTTATTTTCACGTCA-TACA-TATTTT-G-CAGATCGTTTTT--CAGAAAACGA-----ATT--ATAT-TGCATCA----TCA---GTTCGTTTTTGAAA-AGGAAT----AAA-CCAGTAATGACAC---TTA-AATTTTACAT-ACAAACCTTGAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTAC-ACGC--T--GAA------GAT-TA-CGT-AT---TATG-C-A-GACA-TGTATATGTAT------AGTAC-----------------GGGCAG--AATC------AATTT-C-TTTTGTCAAA-------A-ATAC-CGGC-AGT--C--ATTCCGGAAATTT-TAGTAAATGAC--CTTCAC--CTC--ATC-ATC-ACC-GTTGTCCATATTCAAATT-TTAAGA-TTA-TGGATTAATTCTATAGTGTGGC---ATAA-ATCCAATGTT-TTTTAAAAGTGCGTG----TT--AATG-----AAT--ACTG----ATT--TTTTGGATTTGGTGA-TAAACA--TTTG-T-TA-AGGAT-GAAGCTTTG----GA-TGTTC-AT-TAAACAAACC-C--AT-ACC-A--AA-TTGGCTTTT--TCA--TTGGCGAGA----ATA-ATTTACA-ATGG-ATGCTAG
gi|2 : TTTTGTTTTTTTTTC-CATCAATAAA--ATTTT-GGCAGATTGTTTTT--CAGAAAACGA-----AT---ATAT-TCCATCA----CCA---GTTCGTTTTGAAAA-AGGAAT----AAAACCAGTA-TGACAC---ATA-AATTT-ACA--ACAAACCT---GAGTTCTTTT--T---------A---GAT-T-AATA-ATTTAC---AACTTTTTTTAC-ACTCA-T--GAC-------AT-TA-CGT-AT---TATGGC-A-GAGA-TGTAT-TGTAT------AGTAC-----------------GGGCAG--AATC------AATTT-C-GTTTGTC--A-------A-ATGC-T-GT-A-T--CCAATTCC-GAAGTTT-TAGT-AACGAC--CTTCAC--CTC--AAA-ATCAATT-GTTGTACA-ATTCCGATT-TAAAAA-TCA-ATGATTAATTCTTTAGTGTGGC---ATAATATT---TTTG-TTTTAAAGGTGCGTGTT--TT--AATGAAAAAAATTAACTGGAAAATTTATTTTGAATTTGGTGA-TAAACAATTTTG-T-TA-AGG-T--AAG-TTTG----GA-TGTTC-AT-TAAAC-AACC-C--AT-ATC-A--AA-TTGGCTTTT--TCAAGCAAGCGAGA----ATA-TTTTACA-ATGG-ATGTTAG
gi|9 : catcattgtttaaacgtttaactgaTTTGTTTTTATTT-CACGTCA-TAAA-AATTTT-G-TAGATCGTTTTTATCAGTAAACGA-----AT---ATAT-TGCATCA----TCA---GTTCGTTTT-GATT-AGGAAT----AAA-CCAGTA-TGACAC---TTA-AATTT-ACAT-ACAAAC-TTGAA-GTTCTTTT--TT----A---A---A-T-T-A-TA-ATTTA----CACTTTTCCTAC-ACTCA-T--TAA-------AT-TA-CGT-AT---TATG-C-A-GACA-TGTATATGTAT------AGTAC-----------------GGGCAG--AATC------AATTT-CGTTTTGTAAAag
gi|6 : catcattgtttaaacgtttaacctgaaTTTGTTTTTATTT-CACGACA-TAAC-CATTTT-G-CAGATCGTTTTT--CAGAAA---------------CAT-TGCATCA----TCA---GTTCGTTTT--GAA-AGGAAG----AAA-CCAACA-TGATACGGTTT----TTTTACAT-ACAAACCT--AAAGTGCTTTTATCT----ATACATGTAAT-TCA-TACATGTATATATACCTTTCTGAC-ACCCA-T--GAA-------AT-TA-CGT-AT---TATG-C-G-GACA-TGCATATGTAT------AGTAT-----------------TGACAG--CATC------AATTT-CGTTTTTTCAAA-------ACATAA-AAAT--GC--C--GTTCCG-AAATTT-TAATAACCGAC--C---AT--CTC---------------TTGTCCAC-TTCGA--T-TTG----TTA-------AATCCTTT-GTGTAGCGCAATAA-CTC---TGTT-TT--AAAGGTGCATC----TTTGAACG-----AAT--AACG----ATT--GTT---ATTTGGTGA-TGATCA--TTGG-T-TA-ATGAT-AAAAC-TTG----AA-TGTTC-TT-TAAAC-CACC-CTTGT-ATC-AACAA-TTGGCCTT
gi|13 : caccatcgtttaaacatttaaccagaaTTTTTTTTTA-TTTCACGTCA-TACA-TATTTT-G-CAGATCGTTTTT--CAGAAAACGA-----AAT--GTATATGTAT
gi|5 : catttaacctgaaTTTTTTTTATTT-CACGTCA-TACAATATTTTTG-CAGATCGTTTTT--C-GAAAACGA-------T--ATAT-TGCATCA----T-A---GTTCGTTT--GAAACAGGAAT----AAA-CCAGTAATGACAC---TTACAATTTCA-AT-ACAAACCTCG-AAGTTTTTTT--T---------A---AAT-T-A-TA-ATTTA----CA-TTTTCCTAC-ACACCAT--AGA------AATCCA-CTTAATTCATATG-CTATGACACTGTATATGTAT------AGTAC-----------------TGG-AG--AATC------AATTG-T-GTTTGTC-AA-------G-ATAC-CTGCTATT--CT-ATTC--GAAATTT-TAGT-AATA----CTTCA---CTC--ATCTAT---CC-GTTGT-CATATTC-AATT-TTAAG--TTA-TGGATTAATTCT-TAGTATGGC---ATAT-A-GCATTGTT-TT---AAAGTG-GTGTTATTT--AATG-----AAT--ACT-----ATTAATATTGA--TTGGTGA-TAAACA--TTTGAT-TA-AGGATAAAAGCTTTG----GATTGTTC-AT-TAAACAA--C-C--AT-CCA-A--AA-ATGGC--TT--TCA--TT-TCGAGA----AT--ATTTACA-ATGGCATGCTAagtacgggcagaatcaatttcgttttgtcaaaatacctgcattctatccgaaatttagtaaatgaccttcacctc
gi|17 : gTTTGTTTTATTT-CACGTCA-TAAT-TATTTT-G-CAGATCGTTTTT--CGGAAAACGA-----A-A--ATAT-TGTATCA----TCA---GTTCGTTTT--GAA-AGGAAT----AAA-TCag
gi|3 : aacatcatttaaacatttcaccagaaTTTGTT-TTTTC-CGTCA-TAAT-TTTTTT-G-CAGATCGTGTT---CAGAAA-CGAGAAATATTTAACAT-AGCATCACAAGTCATAAGTTCGTTT---GAA-GGAAAT----AAA-TCAGTTATAACAC---TTT-TATTT-ACATTACAA-CCT--AAAGTTCGTTT--TTCGTAA---A---AATCT-AGTA-ATTCAT---TA-TTTTCTTACCACCCA-T--AAATCACATG-T-TA-CGTTAT---TATG-C-G-GATA-TGCATATGCATGTACATAGTACTTTACGAGTATAGTACTGGCCAGTAAATTCCCTCAAATTT-CTTTTTGTCAAA-------C-ATCC-T--C---T--C--GTTCC-AAAATTTATAA-GAGTCACAGCCTCACATCTCAGATC-TTC-TCT-CTTTTCCA-ATTC--GTTCTTAAAA--------ATT--------------------TAA-A---AATATT-TTC----AGTG------------AAT------AAT----TG----ATT--ATTTGA--TTGGTTA-TAACCA--GTTG-C-TAGATGAT-AAAGCTTTG----A---GTTCTAT-TAAAT-AACC-C--AT-ATCAA--AA-TAGGCCTTT--TCA--GCGGCGAGA----ATATTTTTACAGATGG-
gi|1 : catacattgatatacatttaatcagcgA-TATTTT-G-CATATCGTTTTT--CAGAAAACGA-----AT---ATAT-TGCATCA----TCA---GGTCGTTTT-GAAA-AGGAAT----A---CCAATG-TGACAT---TTT-CATTT-ACTT-GCAAACCT-GA-----TTTTT--TT----C---A---AAT-T-A-TA-ATTTA----CACTTTTCCTAC-AACC--C--ATG------GAT-TA-CGT-AT---TATG-CGA-AACA-TGTATTTGTAT------AGTATT----------------GGGCAA--AATC------AATTTGC-TTTTGTCAAA-------A--CAC-GTGA-ATT--CC-ATTCCGTAA-TTT-TAATAAATGAC--CTTCAC--CTC--A---ATC-ATCTGTTGTCCA-ATTCCA-TA-TTAAAA-TTA-TGGATTAATCCTG-AGTGTGGC---AT-----TTAGTTTTGTTTTAAAGGTGCATT----TTTGAATG-----AAT--ACTG----ATT--ATTTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-CAAGCTTTG----AA-TGTTC-GT-TAAAC-AGCC-C--AT-ATC-A--AAGTTGGCTTTT--
gi|14 : atcaccgtttaagcatttaaccaaaatttgaa--ATAT-TTCATCA----TCA---GTTCGTTTT--GAA-AGGAAT----AAA-CCAGT-ATTACAC---TTT-TA-TTTACAC-GCAAACCT--AAAGTTCTTTT--TT----agtccaggccccatcctcggcatctgccatttgaatatattgttaagagttattcatttgttataatatagggtctgggaaataaacatgatataa
gi|8 : tcatcgtttaaacatttaaccagaatgtttctattgcaaaTTCAAA-AAGAATGTTTAAT-CCTATAATTACA---------AGTTTACAT-ACAAACCT--AAAGTTCTTTTC-TT----A---------T-T-AATA-ATTTAT----ACCCTTCTCAC-ACTCA-T--GAA-------AT-TAACA--AT---TATG-C-A-GACA-TGCATATGCAT------AGCAC-----------------TGGCAG--TATC------AATTT-CGTTTCGTCAGAGCGTTTCA-ATAC-CG------------TTAC-AAAAGTT-TAATAAACGAC--CTTCAC--CTCA-ATC-AT---CT-GTTTTTCA-ATTC-GTTT-TTAAAA-CTAGTAG-TTAATCCT-TTGTGTGGC---ATAA-TACC--TCTG-TTTTAAAGGTGTGTC----TTTGAATG-----AAT--Attttccattatttatttataa
gi|7 : CAAACCT-GA----TTTTTT--TA----A---A---AAT-T-A-TA-ATTTA----CACCTTTCCTAC-AC-C--TATGGA-------AT-TA-TGT-AT---TATG-C-G-AGCA-TGTATTTGTAT------TGTAC-----------------TGGCAG--AATC------AATTTGG-TTTTGTC-AA-------A-ACACGCG---AATTCC--ATTCC-GCAATTT-TAGTAAACGAC--CTTCAC--CTCA-ATC-AT---CT-GTTGTCCA-ATTC-GATA-TTAAAA-TTA-TGGATTAATCCTG-AGTGTGGC---ATAA----TAGTTTTCTTTTAAAGGTGCATT----TTTGAATG-----AAT--ACTG----ATT--ATTTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-CAAGCTTTG----AA-TGTTC-TT-TAAAC-AGCC-C--AT-ATG-A--AAGTTGGCTTTTAGTCA--T
gi|13 : -GAAA-TGTATATGTAT------AGTAC-----------------GGGCAG--AATC------AATTT-CGTTTTGTC-AA-------A-ATAC-CTGC-ATT--C--TATCCGAAA--TT-TAGTAAATGAC--CTTCAC--CTC--ggtcccatcctcggcagctgccatttgaatataatatattgttaagagttattcatttgtta
gi|10 : catttaacctgaatttttttttatttcacgtcatacatattttgcagatcgtttttcagaaaacAC--CTC--A---ATC-ACCTGTTTTCCA-ACTCA--TT-TTCAGAATTA-TGGATTATTCCT-TAGTATGGT---ATAA-AACC--TCTT-TTGTAAATGTGCGTC----TTTGAATG-----AAT--AATG----CTT--ATTTGA--TTGGTGA-TAACCA--TTTG-T-TA-ATGTT---AGCTTTG----AC-TGTCC-TT-TAAACATTCCAC--AT-A-A-A--AA-TCGGCCTCG--TCA--GCGGCGAGA----AT--ATTTACT-CTGG-ATACTA
gi|19 : --CTC--AT---TC-ACCTGTTGTCCA-ATACGA-TT-ATAAAA-TTA-TGGATTAATCCT-TTGTGTGGC---Ata
gi|11 : TGTCCATATTCAA-TT-TTAAGA-TTA-TGGATTAATTCT-TAGTGTGGC---ATAATAGCCA-TGTT-TT--AAAAGTGCGTGTT--TT--AATG-----AAT--ACTG----ATT--ATTTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-AAAGCTTTG----GA-TGTTC-AT-TAAAC-AACC-C--AT-ACCAA--AA-TTGGCTTTT--TCA--TTGGCGAGA----AT--ATTTACA-ATGG-ATGCTAG
gi|15 : ----TT--TATG-----AAT--ACCG----AAT--ATT--G--TTGGTGAATATACA--TTTG-TGTA-AAGATAGAAGCATTGC---GA-TGTT--ATATAAACAA-CC-C--ATTACC-A--AAATTGGCTTTT--CAG--CCGGCGAGAC---ATA-TTTGACA-ATGGAATGCTagg
gi|16 : gtATTTGGTGA-TAACCA--TTTG-T-TA-ATGAT-GAAGCTTTGAATTAA-TGTTT--T-TAAGC-AACA-C--AT-ATC-A--AATTTGGCCTTT--TCA--TCGACG-GATTTTTTT-TTTTACA-ATGG-ATACTta
gi|18 : aattCTTTA----CA-TATT--AC-TAAACA-----C--AT-TAC-A--AA-TTGGCCTTT---CG--CGGCCGAAG----ATT--TTTACA-ATGG-ATGCGAGtagtt
gi|21 : -TTGGCTATT--TCA--GCGGCTAGA----ATT--TTTACA-ATGG-ATGCTAGggttacgcggctctaagtcaaaacagtat
gi|22 : GCCTTT--TCA--GCAGCTAGA----ATT-ATTTACA-ATGG-ATGCTAGagg
gi|20 : GCCTTT--TCA--GCGGCAAGA----ATT--TTTACA-ATGG-ATGTTAGagg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 11111 11111 111111111 11111 1111 11 1111 11111 2222222222222222 22222 111111 111111 33333333333333333 111111 2222222222222222222 11 11111 3333333333333333 2222 555555555555555555 111 111 1111 11 1 111111111
lowQualScore : 0 2 66 4 4 1 4 4 4 55 777 11111 00000 4 666666666 8888 777 4 55555 4 2222 33 66 6666 1 4 77777 4444444444444444 4 8 8 4 44444 1 4 4 4 4 777777 4 4 555 777 4 66 4 4 1 111111 22222222222222222 55 111111 4 5 8888888888888888888 4 66 9 0 55555 0 4 6666666666666666 7 3333 3 3 3 55 33 3 3 333333333333333333 1 1 99999 55 99999 3 3 3 444 3 2 55 3 3 0 222 0000 3 66 3 3 44 3 3 11 44 2 3 44 3 3 888888888 3 6
lowQualScore : . . .. . . . . . . .. ... ..... ..... . ......... .... ... . ..... . .... .. .. .... . . ..... ................ . . . . ..... . . . . . ...... . . ... ... . .. . . . ...... ................. .. ...... . . ................... . .. . . ..... . . ................ . .... . . . .. .. . . .................. . . ..... .. ..... . . . ... . . .. . . . ... .... . .. . . .. . . .. .. . . .. . . ......... . .
lowQualScore : 4 8 33 4 0 5 0 0 0 55 000 99999 00000 0 000000000 5555 000 0 77777 0 5555 88 11 0000 9 4 88888 9999999999999999 4 9 9 4 11111 1 4 4 4 4 222222 4 4 333 888 4 11 0 0 1 555555 00000000000000000 55 555555 0 7 2222222222222222222 4 99 0 9 66666 9 4 8888888888888888 3 3333 6 6 6 00 88 6 6 555555555555555555 0 4 11111 00 11111 6 6 6 000 6 2 00 6 6 5 000 4444 3 22 3 3 66 3 3 22 66 3 3 33 3 3 444444444 3 7
consensus : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G-AAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAAA-ATACCTGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAA--TTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-A-C--A--TCTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TAAGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-A-GC-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
Reference ( family-2850 ) : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G-GAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAAA-ATACCNGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAA--TTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-ACC--A--TNTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TAAGGAT-A-AAGCTTTG----AA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-A-NC-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
gi|1 : A-AATATTTT-G-C-ATATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-GTCGTTTT-G-AAA-AGGAAT----A--CCAATG-TGACAT--TTTCATTT-ACT-TGCAAACCT-GA-----TTTTT--TT----C---A---AAT-T-A-TA-ATTTA----CACTTTTCCTA-CAAC-CCAT-GGA-------T-TA-CG-T-AT---TAT-GC--GAAACA-TGTATTTG------TATAGTATT----------------GGGCAA--AATC------AATTTGCT-TTTGTCAAAA--CACGTGA-A-TTCC--AT-TCCGTAA-TTTTAATAA-----ATGACCTT-CACCTC--AATC-ATC----T-GTTGTCCA-ATTCC-A-TA-T-T-AAAA--TTA-TGGATTAA-TCCT-GAGTGTGGCATT--T-A----G--TTTTG-TTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TAAGGAT-C-AAGCTTTG----AA-TGTTC-GT-TAAAC-AGCCC--AT-AT-C--A--AAGTTGGCTTTT
gi|10 : atcaccgtttaagcatttaaccaaaatttgACCTC--A----ATC-A-CCTGTTTTCCA-ACTC--A-TT-T-TCAGAA--TTA-TGGATTAT-TCCT-TAGTATGGTATA--A-AAC--C--TCTT--TTGTAAATGTGCGTCTTTGAATG-----AAT--AATGC-----TT-A-T-TTGA--TTGGTGA-TAACCA--TTTG-T-TAATGTT----AGCTTTG----AC-TGTCC-TT-TAAAC-ATTCC--AC-ATAA--A--AA-TCGGCCTCGTC-A-GC-GGC-GAGA----A--TATTTACT-CTGG-ATACTAagtccaggccccatcctcggcatctgccatttgaatatattgttaagagttattcatttgttataatatagggtctgggaaataaacatgatataa
gi|11 : TGTCCATATTC--AATT-T-T-AAGA--TTA-TGGATTAA-TTCT-TAGTGTGGCATAATA-GCC--A--TG----TTTTAAAAGTGCGTGTTTTAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TAAGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AC-CA-A--AA-TTGGCTTTTTC-A-TT-GGC-GAGA----A--TATTTACA-ATGG-ATGCTAGta
gi|13 : TTTTTTTTTA-TTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AAATGT-AT-----ATGTATAGTACGGGCAGAA----TC---AATTTCGTTTT-G-agg
gi|13 : catttaacctgaaGA-AA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTC-AAA-ATACCTGC-A-T--T--CTATCCGAAA--TTTAGTAA-----ATGACCTT-CACCTC--tcaaaatacctgcattctatccgaaatttagtaaatgaccttcacctc
gi|14 : catttaacctgaatttttttttatttcacgtcatacatattttgcagatcgtttttcagaaaacTCATCGTT--TA-AACATTTA-A-CCAGAATGTTTCT-----ATTGCA---AA-----AT-----AT-T---------TCATCA----TC---AG-TTCGTTTT---GAA-AGGAAT----AAACCAGT-ATTACAC--TTTTA-TTTACA-CGCAAACCT--AAAGTTCTTTT--TT----
gi|15 : GTTTT---ATG-----AAT--ACCGA-----AT-A-T-T--G--TTGGTGAATATACA--TTTG-TGTAAAGAT-AGAAGCATTGC---GA-TGTT--ATATAAAC-AACCC--ATTAC-C--A--AAATTGG-CTTTTC-AGCC-GGC-GAGAC---AT-ATTTGACA-ATGGAATGCTttttccattatttatttataa
gi|16 : A-----TT-A-T-TTG------GTGA-TAACCA--TTTG-T-TAATGAT-G-AAGCTTTGAATTAA-TGTTT--T-TAAGC-AACAC--AT-AT-C--A--AATTTGGCCTTTTC-A-TC-GAC-G-GATTTTTT-TTTTTACA-ATGG-ATACTta
gi|17 : aTTTGTTTTATTT-CA-CGTCA-TA-ATTATTTT-G-C-AGATCGTTTTT--CGGAAAACG---AA---A-AT-----AT-T---------GTATCA----TC---AG-TTCGTTTT---GAA-AGGAAT----AAATCtagtt
gi|18 : aacatcatttaaacatttcaccagaaCTTTA----CA-TATT--AC-TAAAC-A---C--AT-TA-C--A--AA-TTGGCCTTTC----GC-GGCCGAAG----AT-T-TTTACA-ATGG-ATGCGAG
gi|19 : CTC--A-T---TC-A-CCTGTTGTCCA-ATAC--G-AT-TAT-AAAA--TTA-TGGATTAA-TCCT-TTGTGTGGCAggttacgcggctctaagtcaaaacagtat
gi|2 : TTTTGTTTTTTTTTC--CATCAATA-AA-ATTTT-GGC-AGATTGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------CCATCA----CC---AG-TTCGTTTT-GAAAA-AGGAATA---AAACCAGT-ATGACAC--ATAAA-TTTACA--ACAAACCT-G--AGTTCTTTT--T---------A---GAT-TAA-TA-ATTTAC---AACTTTTTTTA-CA-C-TCAT-GAC------AT-TA-CG-T-AT---TATGGC--AGA-GA-TGTAT-TG------TATAGTAC-----------------GGGCAG--AATC------AATTTCG--TTTGTC--AA-ATG-CTGT-A-T--CCAAT-TCC-GAAGTTTTAGT-A-----ACGACCTT-CACCTC--A-AA-ATCAA-TT-GTTGTACA-ATTCCGA-TT-T-A-AAAA--TCA-ATGATTAATTCTT-TAGTGTGGCATA--A---T--A--TTTTTGTTTTAAAGGTGCGTGTTTTAATGAAAAAAATTAACTGGAAAATTT-ATT-TTGAATTTGGTGA-TAAACAATTTTG-T-TAAGG-T-A-AG--TTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCTTTTTCAA-GCAAGC-GAGA----AT-ATTTTACA-ATGG-ATGTTAG
gi|20 : catcattgtttaaacgtttaactgaGCCTTTTC-A-GC-GGC-AAGA----AT-T-TTTACA-ATGG-ATGTTAGag
gi|21 : tgga-TTGGCTATTTC-A-GC-GGC-TAGA----AT-T-TTTACA-ATGG-ATGCTAGagg
gi|22 : GCCTTTTC-A-GC-AGC-TAGA----AT-TATTTACA-ATGG-ATGCTAGagg
gi|3 : TTTGTT-TTTTC--CGTCA-TA-ATTTTTTT-G-C-AGATCG-TGTT--CAG-AAACGAGAAA---T-ATTTAACAT-A---------GCATCACAAGTCATAAG-TTCGTTT----GAA-GGAAAT----AAATCAGTTATAACAC--TTTTA-TTTACATTAC-AACCT--AAAGTTCGTTT--TTCGTAA---A---AATCT-AGTA-ATTCAT---TA-TTTTCTTACCA-C-CCAT-AAATCACATGT-TA-CGTT-AT---TAT-GC--GGA-TA-TGCATATGCATGTACATAGTACTTTACGAGTATAGTACTGGCCAGTAAATTCCCTCAAATTTCTT-TTTGTCAAAC-AT-CCT-C---T--C--GT-TCC--AAAATTTA-TAAGAGTCACAGCCTCACATCTCAGA-TC-TTC-T-CT-CTTTTCCA-ATTC--G-TTCT-T-AAAAATTTA-AAAAT--A-TTTT-CAGT---GAATA--A-----------TT---------GAT---TATTTGATTG-----GTT--A-TAA-----CC-A-G-TTGC--TAGATGA-TAA-----------------------AGCTTTG----A---GTTCTAT-TAAAT-AACCC--AT-AT-CA-A--AA-TAGGCCTTTTC-A-GC-GGC-GAGA----ATATTTTTACAGATGG-agg
gi|4 : catacattgatatacatttaatcagcgTTTTTTTTTATTTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---TTAT-----AT-T---------GCATCA----TC---AG-TTCGTTTTTG-AAA-AGGAAT----AAACCAGTAATGACAC--TTAAATTTTACA-TACAAACCTTGAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-GC-T-GAAG-----AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTC-T-TTTGTCAAAA-ATACCGGC-AGT--C--AT-TCCGGAAATTTTAGTAA-----ATGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCATATTCAAA-TT-T-T-AAGA--TTA-TGGATTAA-TTCTATAGTGTGGCATA--A-ATCCAA--TGTT--TTTTAAAAGTGCGTGTT--AATG-----AAT--ACTGA-----TT-T-T-TTGGATTTGGTGA-TAAACA--TTTG-T-TAAGGAT-G-AAGCTTTG----GA-TGTTC-AT-TAAACAAACCC--AT-AC-C--A--AA-TTGGCTTTTTC-A-TT-GGC-GAGA----AT-AATTTACA-ATGG-ATGCTAG
gi|5 : TTTTTTTTATTT-CA-CGTCA-TACAATATTTTTG-C-AGATCGTTTTT--C-GAAAACG---A----T-AT-----AT-T---------GCATCA----T----AG-TTCGTTT--G-AAACAGGAAT----AAACCAGTAATGACAC--TTACAATTTCAA-TACAAACCT-CGAAGTTTTTTT--T---------A---AAT-T-A-TA-ATTTA----CA-TTTTCCTA-CA-CACCATAGAA------ATCCA-CT-TAATTCATAT-GCTATGA-CACTGTATATG------TATAGTAC-----------------TGG-AG--AATC------AATT--GTGTTTGTC-AAG-ATACCTGCTA-TTCT--AT-TC--GAAATTTTAGTAAT----A----CTT-CA-CTC--A-TCTAT----CC-GTTGTCAT-ATTC--A-AT-T-T-TAAG--TTA-TGGATTAA-TTCT-TAGTATGGCATA--T-AGC--A--T-TG--TTTTAAAGTGGTGTTATTTAATG-----AAT--ACT-A-----TTAA-TATTGA--TTGGTGA-TAAACA--TTTGAT-TAAGGATAA-AAGCTTTG----GATTGTTC-AT-TAAAC-AACC------AT-CCAA--AA-ATGGC--TTTC-A-TT--TC-GAGA----A--TATTTACA-ATGGCATGCTA
gi|6 : gTTTGTTTTTATTT-CA-CGACA-TA-ACCATTTT-G-C-AGATCGTTTTT--CAGAAA--------------C-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AA-AGGAAG----AAACCAACA-TGATACGGTTT--TTTTACA-TACAAACCT--AAAGTGCTTTTATCT----ATACATGTAAT-TCA-TACATGTATATATACCTTTCTGA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGCATATG------TATAGTAT-----------------TGACAG--CATC------AATTTCGT-TTTTTCAAAACATAAAAAT-G-C--C--GT-TCC-GAAATTTTAATAA-----CCGAC----CATCTC-----------------TTGTCCA-CTTC--G-AT-T-T----G--TTA-------AA-TCCT-TTGTGTAGCGCAATA-AC------TCTG--TTTTAAAGGTGCATCTTTGAACG-----AAT--AACGA-----TT-G-T-T--AT-TTGGTGA-TGATCA--TTGG-T-TAATGAT-A-AAAC-TTG----AA-TGTTC-TT-TAAAC-CACCCTTGT-AT-C--AACAA-TTGGCCTTag
gi|7 : caccatcgtttaaacatttaaccagaaCAAACCT-GA----TTTTTT--TA----A---A---AAT-T-A-TA-ATTTA----CACCTTTCCTA-CA-C-CTAT-GGA------AT-TA-TG-T-AT---TAT-GC--GAG-CA-TGTATTTG------TATTGTAC-----------------TGGCAG--AATC------AATTTGGT-TTTGTCAAAA--CACGCGA-A-TTCC--AT-TCCGCAA-TTTTAGTAA-----ACGACCTT-CACCTC--A----ATC-ATCT-GTTGTCCA-ATTC--GATA-T-T-AAAA--TTA-TGGATTAA-TCCT-GAGTGTGGCATA--A---T--AGTTTTC--TTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TAAGGAT-C-AAGCTTTG----AA-TGTTC-TT-TAAAC-AGCCC--AT-AT-G--A--AAGTTGGCTTTT
gi|8 : AA-AAGAATGTTTAATCCTATAATTACA-------AGTTTACA-TACAAACCT--AAAGTTCTTTTC-TT----A---------T-T-AATA-ATTTAT----ACCCTTCTCA-CA-C-TCAT-GAA------AT-TAACA---AT---TAT-GC--AGA-CA-TGCATATG------CATAGCAC-----------------TGGCAG--TATC------AATTTCGT-TTCGTCAGAGCGTTTCAAT-A-C--C--GT-TACA-AAAGTTTAATAA-----ACGACCTT-CACCTC--A----ATC-ATCT-GTTTTTCA-ATTC--GTTT-T-T-AAAA--CTAGTAG-TTAA-TCCT-TTGTGTGGCATA--ATACC-----TCTG--TTTTAAAGGTGTGTCTTTGAATG-----AAT--Aagtcatggtcccatcctcggcagctgccatttgaatataatatattgttaagagttattcatttgtta
gi|9 : ttcaTTTGTTTTTATTT-CA-CGTCA-TA-AAAATTTT-G-T-AGATCGTTTTTATCAGTAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G-ATT-AGGAAT----AAACCAGTA-TGACAC--TTAAATTT-ACA-TACAAACTT-GAA-GTTCTTTT--TT----A---A---A-T-T-A-TA-ATTTA----CACTTTTCCTA-CA-C-TCAT-TAA------AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 11111 11111 111111111 1111 11 1111 11111 2222222222222222 22222 111111 111111 33333333333333333 111111 44444444444444444444444444444 11 11111 3333333333333333 2222222 222222222222 111 11 1111111 11 1 111111111
lowQualScore : 0 2 66 4 4 1 4 4 4 55 777 11111 00000 4 666666666 8888 777 4 3 999 3 2222 33 66 6666 1 4 77777 4444444444444444 4 8 8 4 44444 1 4 4 4 4 777777 4 4 555 777 4 66 4 4 1 111111 22222222222222222 55 111111 4 5 22222222222222222222222222222 4 66 9 0 55555 0 4 6666666666666666 7 0000000 3 3 3 3 3 0 888888888888 7 000 2 1 99999 55 99999 3 3 3 33 3 55 3 3 3 0 999 0000000 66 3 3 44 3 3 11 44 2 3 33 3 3 888888888 3 6
lowQualScore : . . .. . . . . . . .. ... ..... ..... . ......... .... ... . . ... . .... .. .. .... . . ..... ................ . . . . ..... . . . . . ...... . . ... ... . .. . . . ...... ................. .. ...... . . ............................. . .. . . ..... . . ................ . ....... . . . . . . ............ . ... . . ..... .. ..... . . . .. . .. . . . . ... ....... .. . . .. . . .. .. . . .. . . ......... . .
lowQualScore : 4 8 33 4 0 5 0 0 0 55 000 99999 00000 0 000000000 5555 000 0 6 999 6 5555 88 11 0000 9 4 88888 9999999999999999 4 9 9 4 11111 1 4 4 4 4 222222 4 4 333 888 4 11 0 0 1 555555 00000000000000000 55 555555 0 7 88888888888888888888888888888 4 99 0 9 66666 9 4 8888888888888888 3 7777777 6 6 6 6 6 3 222222222222 3 111 3 4 11111 00 11111 6 6 6 66 6 00 6 6 6 5 888 9999999 22 3 3 66 3 3 22 66 3 3 88 3 3 444444444 3 7
consensus : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-A--C---ATNTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
Reference ( family-2850 ) : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-A--C---ATCTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
gi|1 : A-AATATTTT-G-C-ATATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-GTCGTTTT-G--AAA-AGGAAT----A--CCAATG-TGACAT--TTTCATTT-ACT-TGCAAACCT-GA-----TTTTT--TT----C---A---AAT-T-A-TA-ATTTA----CACTTTTCCTA-CAAC-CCAT-GGA-------T-TA-CG-T-AT---TAT-GC--GAAACA-TGTATTTG------TATAGTATT----------------GGGCAA--AATC------AATTTGCT-TTTGTCAAA-------A--C--ACGTGA-A-TTCC--AT-TCCGTAA-TTTTAATAA-----ATGACCTT-CACCTC--AATC-ATC----T-GTTGTCCA-ATTCC-A-TA-T-T-AAAATTA-TGGATTAA-TCCT-GAGTGTGGCATT--T-A--G---TTTTG--TTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-C-AAGCTTTG----AA-TGTTC-GT-TAAAC-AGCCC--AT-AT-C--A--AAGTTGGCTTTT
gi|10 : atcaccgtttaagcatttaaccaaaatttgACCTC--A----ATC-A-CCTGTTTTCCA-ACTC--A-TT-T-TCAGAATTA-TGGATTAT-TCCT-TAGTATGGTATA--A-AA-C---CTCTT--TTGTAAATGTGCGTCTTTGAATG-----AAT--AATGC-----TT-A-T-TTGA--TTGGTGA-TAACCA--TTTG-T-TA-ATGTT----AGCTTTG----AC-TGTCC-TT-TAAAC-ATTCC--AC-ATAA--A--AA-TCGGCCTCGTC-AG-C-GGC-GAGA----A--TATTTACT-CTGG-ATACTAagtccaggccccatcctcggcatctgccatttgaatatattgttaagagttattcatttgttataatatagggtctgggaaataaacatgatataa
gi|11 : TGTCCATATTC--AATT-T-T-AAGATTA-TGGATTAA-TTCT-TAGTGTGGCATA--ATAGCC---ATGTT--TT--AAAAGTGCGTGTTTTAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AC-CA-A--AA-TTGGCTTTTTC-AT-T-GGC-GAGA----A--TATTTACA-ATGG-ATGCTAGta
gi|13 : TTTTTTTTTA-TTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AAATGT-AT-----ATGTATAGTACGGGCAGAA----TC---AATTTCGTTTT-GTCAAA-Aagg
gi|13 : catttaacctgaaGA-AA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTC-AA-------A-AT--ACCTGC-A-T--T--CTATCCGAAA--TTTAGTAA-----ATGACCTT-CACCTC--tacctgcattctatccgaaatttagtaaatgaccttcacctc
gi|14 : catttaacctgaatttttttttatttcacgtcatacatattttgcagatcgtttttcagaaaacTCATCGTT--TA-AACATTTA-A-CCAGAATGTTTCT-----ATTGCA---AA-----AT-----AT-T---------TCATCA----TC---AG-TTCGTTTT-G---AA-AGGAAT----AAACCAGT-ATTACAC--TTTTA-TTTACA-CGCAAACCT--AAAGTTCTTTT--TT----
gi|15 : GTTTT---ATG-----AAT--ACCGA-----AT-A-T-T--G--TTGGTGAATATACA--TTTG-TGTA-AAGAT-AGAAGCATTGC---GA-TGTT--ATATAAAC-AACCC--ATTAC-C--A--AAATTGG-CTTTTC-AGCC-GGC-GAGAC---AT-ATTTGACA-ATGGAATGCTttttccattatttatttataa
gi|16 : A-----TT-A-T-TTG------GTGA-TAACCA--TTTG-T-TA-ATGAT-G-AAGCTTTGAATTAA-TGTTT--T-TAAGC-AACAC--AT-AT-C--A--AATTTGGCCTTTTC-AT-C-GAC-G-GATTTTTT-TTTTTACA-ATGG-ATACTta
gi|17 : aTTTGTTTTATTT-CA-CGTCA-TA-ATTATTTT-G-C-AGATCGTTTTT--CGGAAAACG---AA---A-AT-----AT-T---------GTATCA----TC---AG-TTCGTTTT-G---AA-AGGAAT----AAATCtagtt
gi|18 : aacatcatttaaacatttcaccagaaCTTTA----CA-TATT--AC-TAAAC-A---C--AT-TA-C--A--AA-TTGGCCTTTC---G-C-GGCCGAAG----AT-T-TTTACA-ATGG-ATGCGAG
gi|19 : CTC--A-T---TC-A-CCTGTTGTCCA-ATAC--G-AT-TAT-AAAATTA-TGGATTAA-TCCT-TTGTGTGGCAggttacgcggctctaagtcaaaacagtat
gi|2 : TTTTGTTTTTTTTTC--CATCAATA-AA-ATTTT-GGC-AGATTGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------CCATCA----CC---AG-TTCGTTTT-GA-AAA-AGGAATA---AAACCAGT-ATGACAC--ATAAA-TTTACA--ACAAACCT-G--AGTTCTTTT--T---------A---GAT-TAA-TA-ATTTAC---AACTTTTTTTA-CA-C-TCAT-GAC------AT-TA-CG-T-AT---TATGGC--AGA-GA-TGTAT-TG------TATAGTAC-----------------GGGCAG--AATC------AATTTCG--TTTGTC--A-------A-AT--G-CTGT-A-T--CCAAT-TCC-GAAGTTTTAGT-A-----ACGACCTT-CACCTC--A-AA-ATCAA-TT-GTTGTACA-ATTCCGA-TT-T-A-AAAATCA-ATGATTAATTCTT-TAGTGTGGCAT---A-A--T---ATTTTTGTTTTAAAGGTGCGTGTTTTAATGAAAAAAATTAACTGGAAAATTT-ATT-TTGAATTTGGTGA-TAAACAATTTTG-T-TA-AGG-T-A-AG--TTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCTTTTTCAAG-CAAGC-GAGA----AT-ATTTTACA-ATGG-ATGTTAG
gi|20 : catcattgtttaaacgtttaactgaGCCTTTTC-AG-C-GGC-AAGA----AT-T-TTTACA-ATGG-ATGTTAGag
gi|21 : tgga-TTGGCTATTTC-AG-C-GGC-TAGA----AT-T-TTTACA-ATGG-ATGCTAGagg
gi|22 : GCCTTTTC-AG-C-AGC-TAGA----AT-TATTTACA-ATGG-ATGCTAGagg
gi|3 : TTTGTT-TTTTC--CGTCA-TA-ATTTTTTT-G-C-AGATCG-TGTT--CAG-AAACGAGAAA---T-ATTTAACAT-A---------GCATCACAAGTCATAAG-TTCGTTT-----GAA-GGAAAT----AAATCAGTTATAACAC--TTTTA-TTTACATTAC-AACCT--AAAGTTCGTTT--TTCGTAA---A---AATCT-AGTA-ATTCAT---TA-TTTTCTTACCA-C-CCAT-AAATCACATGT-TA-CGTT-AT---TAT-GC--GGA-TA-TGCATATGCATGTACATAGTACTTTACGAGTATAGTACTGGCCAGTAAATTCCCTCAAATTTCTT-TTTGTCAAA-------C-AT---CCT-C---T--C--GT-TCC--AAAATTTA-TAAGAGTCACAGCCTCACATCTCAGA-TC-TTC-T-CT-CTTTTCCA-ATTC--G-TTCT-T-AAAA-------ATT------------------TA--A-A--A---ATATT--TTC---AG---------TGAAT------AAT----TGA-----TT-A-T-TTGA--TTGGTTA-TAACCA--GTTG-C-TAGATGAT-A-AAGCTTTG----A---GTTCTAT-TAAAT-AACCC--AT-AT-CA-A--AA-TAGGCCTTTTC-AG-C-GGC-GAGA----ATATTTTTACAGATGG-agg
gi|4 : catacattgatatacatttaatcagcgTTTTTTTTTATTTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---TTAT-----AT-T---------GCATCA----TC---AG-TTCGTTTTTG--AAA-AGGAAT----AAACCAGTAATGACAC--TTAAATTTTACA-TACAAACCTTGAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-GC-T-GAAG-----AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTC-T-TTTGTCAAA-------A-AT--ACCGGC-AGT--C--AT-TCCGGAAATTTTAGTAA-----ATGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCATATTCAAA-TT-T-T-AAGATTA-TGGATTAA-TTCTATAGTGTGGCATA--A-A--TCCAATGTT--TTTTAAAAGTGCGTGTT--AATG-----AAT--ACTGA-----TT-T-T-TTGGATTTGGTGA-TAAACA--TTTG-T-TA-AGGAT-G-AAGCTTTG----GA-TGTTC-AT-TAAACAAACCC--AT-AC-C--A--AA-TTGGCTTTTTC-AT-T-GGC-GAGA----AT-AATTTACA-ATGG-ATGCTAG
gi|5 : TTTTTTTTATTT-CA-CGTCA-TACAATATTTTTG-C-AGATCGTTTTT--C-GAAAACG---A----T-AT-----AT-T---------GCATCA----T----AG-TTCGTTT--G--AAACAGGAAT----AAACCAGTAATGACAC--TTACAATTTCAA-TACAAACCT-CGAAGTTTTTTT--T---------A---AAT-T-A-TA-ATTTA----CA-TTTTCCTA-CA-CACCATAGAA------ATCCA-CT-TAATTCATAT-GCTATGA-CACTGTATATG------TATAGTAC-----------------TGG-AG--AATC------AATT--GTGTTTGTC-AA-------G-AT--ACCTGCTA-TTCT--AT-TC--GAAATTTTAGTAAT----A----CTT-CA-CTC--A-TCTAT----CC-GTTGTCAT-ATTC--A-AT-T-T-TAAGTTA-TGGATTAA-TTCT-TAGTATGGCATAT-A-G--C---AT-TG--TTTTAAAGTGGTGTTATTTAATG-----AAT--ACT-A-----TTAA-TATTGA--TTGGTGA-TAAACA--TTTGAT-TA-AGGATAA-AAGCTTTG----GATTGTTC-AT-TAAAC-AACC------AT-CCAA--AA-ATGGC--TTTC-A--T-TTC-GAGA----A--TATTTACA-ATGGCATGCTA
gi|6 : gTTTGTTTTTATTT-CA-CGACA-TA-ACCATTTT-G-C-AGATCGTTTTT--CAGAAA--------------C-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA--GGAAG----AAACCAACA-TGATACGGTTT--TTTTACA-TACAAACCT--AAAGTGCTTTTATCT----ATACATGTAAT-TCA-TACATGTATATATACCTTTCTGA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGCATATG------TATAGTAT-----------------TGACAG--CATC------AATTTCGT-TTTTTCAAA-------ACATAAAAATGC------C--GT-TCC-GAAATTTTAATAA-----CCGAC----CATCTC-----------------TTGTCCA-CTTC--G-AT-T-T----GTTA-------AA-TCCT-TTGTGTAGCGCAATA-A--C----TCTG--TTTTAAAGGTGCATCTTTGAACG-----AAT--AACGA-----TT-G-T-T--AT-TTGGTGA-TGATCA--TTGG-T-TA-ATGAT-A-AAAC-TTG----AA-TGTTC-TT-TAAAC-CACCCTTGT-AT-C--AACAA-TTGGCCTTag
gi|7 : caccatcgtttaaacatttaaccagaaCAAACCT-GA----TTTTTT--TA----A---A---AAT-T-A-TA-ATTTA----CACCTTTCCTA-CA-C-CTAT-GGA------AT-TA-TG-T-AT---TAT-GC--GAG-CA-TGTATTTG------TATTGTAC-----------------TGGCAG--AATC------AATTTGGT-TTTGTCAAA-------A--C--ACGCGA-A-TTCC--AT-TCCGCAA-TTTTAGTAA-----ACGACCTT-CACCTC--AATC-ATC----T-GTTGTCCA-ATTC--G-ATAT-T-AAAATTA-TGGATTAA-TCCT-GAGTGTGGCATA--A-T--A---GTTTTC-TTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-C-AAGCTTTG----AA-TGTTC-TT-TAAAC-AGCCC--AT-AT-G--A--AAGTTGGCTTTT
gi|8 : TT-C--AAA-AAGAATGTTTAATCCTATAATTACA-------AGTTTACA-TACAAACCT--AAAGTTCTTTTC-TT----A---------T-T-AATA-ATTTAT----ACCCTTCTCA-CA-C-TCAT-GAA------AT-TAACA---AT---TAT-GC--AGA-CA-TGCATATG------CATAGCAC-----------------TGGCAG--TATC------AATTTCGT-TTCGTCAGAGCGTTTCA-AT--ACC------------GT-TACA-AAAGTTTAATAA-----ACGACCTT-CACCTC--A----ATC-ATCT-GTTTTTCA-ATTC--GTTT-T-T-AAAACTAGTAG-TTAA-TCCT-TTGTGTGGCATA--ATA--C---CTCTG--TTTTAAAGGTGTGTCTTTGAATG-----AAT--Aagtcatggtcccatcctcggcagctgccatttgaatataatatattgttaagagttattcatttgtta
gi|9 : TTTGTTTTTATTT-CA-CGTCA-TA-AAAATTTT-G-T-AGATCGTTTTTATCAGTAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--ATT-AGGAAT----AAACCAGTA-TGACAC--TTAAATTT-ACA-TACAAACTT-GAA-GTTCTTTT--TT----A---A---A-T-T-A-TA-ATTTA----CACTTTTCCTA-CA-C-TCAT-TAA------AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 11111 11111 111111111 1111 11 1111 11111 2222222222222222 22222 111111 111111 33333333333333333 111111 44444444444444444444444444444 11 11111 3333333333333333 2222222 222222222222 111 11 1111111 11 1 111111111
lowQualScore : 0 2 66 4 4 1 4 4 4 55 777 11111 00000 4 666666666 8888 777 4 3 999 3 2222 33 66 6666 1 4 77777 4444444444444444 4 8 8 4 44444 1 4 4 4 4 777777 4 4 555 777 4 66 4 4 1 111111 22222222222222222 55 111111 4 5 22222222222222222222222222222 4 66 9 0 55555 0 4 6666666666666666 7 0000000 3 3 3 3 3 0 888888888888 4 000 2 1 99999 55 99999 3 3 3 33 3 55 3 3 3 0 999 0000000 66 3 3 44 3 3 11 44 2 3 33 3 3 888888888 3 6
lowQualScore : . . .. . . . . . . .. ... ..... ..... . ......... .... ... . . ... . .... .. .. .... . . ..... ................ . . . . ..... . . . . . ...... . . ... ... . .. . . . ...... ................. .. ...... . . ............................. . .. . . ..... . . ................ . ....... . . . . . . ............ . ... . . ..... .. ..... . . . .. . .. . . . . ... ....... .. . . .. . . .. .. . . .. . . ......... . .
lowQualScore : 4 8 33 4 0 5 0 0 0 55 000 99999 00000 0 000000000 5555 000 0 6 999 6 5555 88 11 0000 9 4 88888 9999999999999999 4 9 9 4 11111 1 4 4 4 4 222222 4 4 333 888 4 11 0 0 1 555555 00000000000000000 55 555555 0 7 88888888888888888888888888888 4 99 0 9 66666 9 4 8888888888888888 3 7777777 6 6 6 6 6 3 222222222222 9 111 3 4 11111 00 11111 6 6 6 66 6 00 6 6 6 5 888 9999999 22 3 3 66 3 3 22 66 3 3 88 3 3 444444444 3 7
consensus : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-A--C---ATNTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
Reference ( family-2850 ) : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-A--C---ATNTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
gi|1 : A-AATATTTT-G-C-ATATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-GTCGTTTT-G--AAA-AGGAAT----A--CCAATG-TGACAT--TTTCATTT-ACT-TGCAAACCT-GA-----TTTTT--TT----C---A---AAT-T-A-TA-ATTTA----CACTTTTCCTA-CAAC-CCAT-GGA-------T-TA-CG-T-AT---TAT-GC--GAAACA-TGTATTTG------TATAGTATT----------------GGGCAA--AATC------AATTTGCT-TTTGTCAAA-------A--C--ACGTGA-A-TTCC--AT-TCCGTAA-TTTTAATAA-----ATGACCTT-CACCTC--AATC-ATC----T-GTTGTCCA-ATTCC-A-TA-T-T-AAAATTA-TGGATTAA-TCCT-GAGTGTGGCATT--T-A--G---TTTTG--TTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-C-AAGCTTTG----AA-TGTTC-GT-TAAAC-AGCCC--AT-AT-C--A--AAGTTGGCTTTT
gi|10 : atcaccgtttaagcatttaaccaaaatttgACCTC--A----ATC-A-CCTGTTTTCCA-ACTC--A-TT-T-TCAGAATTA-TGGATTAT-TCCT-TAGTATGGTATA--A-AA-C---CTCTT--TTGTAAATGTGCGTCTTTGAATG-----AAT--AATGC-----TT-A-T-TTGA--TTGGTGA-TAACCA--TTTG-T-TA-ATGTT----AGCTTTG----AC-TGTCC-TT-TAAAC-ATTCC--AC-ATAA--A--AA-TCGGCCTCGTC-AG-C-GGC-GAGA----A--TATTTACT-CTGG-ATACTAagtccaggccccatcctcggcatctgccatttgaatatattgttaagagttattcatttgttataatatagggtctgggaaataaacatgatataa
gi|11 : TGTCCATATTC--AATT-T-T-AAGATTA-TGGATTAA-TTCT-TAGTGTGGCATA--ATAGCC---ATGTT--TT--AAAAGTGCGTGTTTTAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AC-CA-A--AA-TTGGCTTTTTC-AT-T-GGC-GAGA----A--TATTTACA-ATGG-ATGCTAGta
gi|13 : TTTTTTTTTA-TTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AAATGT-AT-----ATGTATAGTACGGGCAGAA----TC---AATTTCGTTTT-GTCAAA-Aagg
gi|13 : catttaacctgaaGA-AA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTC-AA-------A-AT--ACCTGC-A-T--T--CTATCCGAAA--TTTAGTAA-----ATGACCTT-CACCTC--tacctgcattctatccgaaatttagtaaatgaccttcacctc
gi|14 : catttaacctgaatttttttttatttcacgtcatacatattttgcagatcgtttttcagaaaacTCATCGTT--TA-AACATTTA-A-CCAGAATGTTTCT-----ATTGCA---AA-----AT-----AT-T---------TCATCA----TC---AG-TTCGTTTT-G---AA-AGGAAT----AAACCAGT-ATTACAC--TTTTA-TTTACA-CGCAAACCT--AAAGTTCTTTT--TT----
gi|15 : GTTTT---ATG-----AAT--ACCGA-----AT-A-T-T--G--TTGGTGAATATACA--TTTG-TGTA-AAGAT-AGAAGCATTGC---GA-TGTT--ATATAAAC-AACCC--ATTAC-C--A--AAATTGG-CTTTTC-AGCC-GGC-GAGAC---AT-ATTTGACA-ATGGAATGCTttttccattatttatttataa
gi|16 : A-----TT-A-T-TTG------GTGA-TAACCA--TTTG-T-TA-ATGAT-G-AAGCTTTGAATTAA-TGTTT--T-TAAGC-AACAC--AT-AT-C--A--AATTTGGCCTTTTC-AT-C-GAC-G-GATTTTTT-TTTTTACA-ATGG-ATACTta
gi|17 : aTTTGTTTTATTT-CA-CGTCA-TA-ATTATTTT-G-C-AGATCGTTTTT--CGGAAAACG---AA---A-AT-----AT-T---------GTATCA----TC---AG-TTCGTTTT-G---AA-AGGAAT----AAATCtagtt
gi|18 : aacatcatttaaacatttcaccagaaCTTTA----CA-TATT--AC-TAAAC-A---C--AT-TA-C--A--AA-TTGGCCTTTC---G-C-GGCCGAAG----AT-T-TTTACA-ATGG-ATGCGAG
gi|19 : CTC--A-T---TC-A-CCTGTTGTCCA-ATAC--G-AT-TAT-AAAATTA-TGGATTAA-TCCT-TTGTGTGGCAggttacgcggctctaagtcaaaacagtat
gi|2 : TTTTGTTTTTTTTTC--CATCAATA-AA-ATTTT-GGC-AGATTGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------CCATCA----CC---AG-TTCGTTTT-GA-AAA-AGGAATA---AAACCAGT-ATGACAC--ATAAA-TTTACA--ACAAACCT-G--AGTTCTTTT--T---------A---GAT-TAA-TA-ATTTAC---AACTTTTTTTA-CA-C-TCAT-GAC------AT-TA-CG-T-AT---TATGGC--AGA-GA-TGTAT-TG------TATAGTAC-----------------GGGCAG--AATC------AATTTCG--TTTGTC--A-------A-AT--G-CTGT-A-T--CCAAT-TCC-GAAGTTTTAGT-A-----ACGACCTT-CACCTC--A-AA-ATCAA-TT-GTTGTACA-ATTCCGA-TT-T-A-AAAATCA-ATGATTAATTCTT-TAGTGTGGCAT---A-A--T---ATTTTTGTTTTAAAGGTGCGTGTTTTAATGAAAAAAATTAACTGGAAAATTT-ATT-TTGAATTTGGTGA-TAAACAATTTTG-T-TA-AGG-T-A-AG--TTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCTTTTTCAAG-CAAGC-GAGA----AT-ATTTTACA-ATGG-ATGTTAG
gi|20 : catcattgtttaaacgtttaactgaGCCTTTTC-AG-C-GGC-AAGA----AT-T-TTTACA-ATGG-ATGTTAGag
gi|21 : tgga-TTGGCTATTTC-AG-C-GGC-TAGA----AT-T-TTTACA-ATGG-ATGCTAGagg
gi|22 : GCCTTTTC-AG-C-AGC-TAGA----AT-TATTTACA-ATGG-ATGCTAGagg
gi|3 : TTTGTT-TTTTC--CGTCA-TA-ATTTTTTT-G-C-AGATCG-TGTT--CAG-AAACGAGAAA---T-ATTTAACAT-A---------GCATCACAAGTCATAAG-TTCGTTT-----GAA-GGAAAT----AAATCAGTTATAACAC--TTTTA-TTTACATTAC-AACCT--AAAGTTCGTTT--TTCGTAA---A---AATCT-AGTA-ATTCAT---TA-TTTTCTTACCA-C-CCAT-AAATCACATGT-TA-CGTT-AT---TAT-GC--GGA-TA-TGCATATGCATGTACATAGTACTTTACGAGTATAGTACTGGCCAGTAAATTCCCTCAAATTTCTT-TTTGTCAAA-------C-AT---CCT-C---T--C--GT-TCC--AAAATTTA-TAAGAGTCACAGCCTCACATCTCAGA-TC-TTC-T-CT-CTTTTCCA-ATTC--G-TTCT-T-AAAA-------ATT------------------TA--A-A--A---ATATT--TTC---AG---------TGAAT------AAT----TGA-----TT-A-T-TTGA--TTGGTTA-TAACCA--GTTG-C-TAGATGAT-A-AAGCTTTG----A---GTTCTAT-TAAAT-AACCC--AT-AT-CA-A--AA-TAGGCCTTTTC-AG-C-GGC-GAGA----ATATTTTTACAGATGG-agg
gi|4 : catacattgatatacatttaatcagcgTTTTTTTTTATTTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---TTAT-----AT-T---------GCATCA----TC---AG-TTCGTTTTTG--AAA-AGGAAT----AAACCAGTAATGACAC--TTAAATTTTACA-TACAAACCTTGAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-GC-T-GAAG-----AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTC-T-TTTGTCAAA-------A-AT--ACCGGC-AGT--C--AT-TCCGGAAATTTTAGTAA-----ATGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCATATTCAAA-TT-T-T-AAGATTA-TGGATTAA-TTCTATAGTGTGGCATA--A-A--TCCAATGTT--TTTTAAAAGTGCGTGTT--AATG-----AAT--ACTGA-----TT-T-T-TTGGATTTGGTGA-TAAACA--TTTG-T-TA-AGGAT-G-AAGCTTTG----GA-TGTTC-AT-TAAACAAACCC--AT-AC-C--A--AA-TTGGCTTTTTC-AT-T-GGC-GAGA----AT-AATTTACA-ATGG-ATGCTAG
gi|5 : TTTTTTTTATTT-CA-CGTCA-TACAATATTTTTG-C-AGATCGTTTTT--C-GAAAACG---A----T-AT-----AT-T---------GCATCA----T----AG-TTCGTTT--G--AAACAGGAAT----AAACCAGTAATGACAC--TTACAATTTCAA-TACAAACCT-CGAAGTTTTTTT--T---------A---AAT-T-A-TA-ATTTA----CA-TTTTCCTA-CA-CACCATAGAA------ATCCA-CT-TAATTCATAT-GCTATGA-CACTGTATATG------TATAGTAC-----------------TGG-AG--AATC------AATT--GTGTTTGTC-AA-------G-AT--ACCTGCTA-TTCT--AT-TC--GAAATTTTAGTAAT----A----CTT-CA-CTC--A-TCTAT----CC-GTTGTCAT-ATTC--A-AT-T-T-TAAGTTA-TGGATTAA-TTCT-TAGTATGGCATAT-A-G--C---AT-TG--TTTTAAAGTGGTGTTATTTAATG-----AAT--ACT-A-----TTAA-TATTGA--TTGGTGA-TAAACA--TTTGAT-TA-AGGATAA-AAGCTTTG----GATTGTTC-AT-TAAAC-AACC------AT-CCAA--AA-ATGGC--TTTC-A--T-TTC-GAGA----A--TATTTACA-ATGGCATGCTA
gi|6 : gTTTGTTTTTATTT-CA-CGACA-TA-ACCATTTT-G-C-AGATCGTTTTT--CAGAAA--------------C-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA--GGAAG----AAACCAACA-TGATACGGTTT--TTTTACA-TACAAACCT--AAAGTGCTTTTATCT----ATACATGTAAT-TCA-TACATGTATATATACCTTTCTGA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGCATATG------TATAGTAT-----------------TGACAG--CATC------AATTTCGT-TTTTTCAAA-------ACATAAAAATGC------C--GT-TCC-GAAATTTTAATAA-----CCGAC----CATCTC-----------------TTGTCCA-CTTC--G-AT-T-T----GTTA-------AA-TCCT-TTGTGTAGCGCAATA-A--C----TCTG--TTTTAAAGGTGCATCTTTGAACG-----AAT--AACGA-----TT-G-T-T--AT-TTGGTGA-TGATCA--TTGG-T-TA-ATGAT-A-AAAC-TTG----AA-TGTTC-TT-TAAAC-CACCCTTGT-AT-C--AACAA-TTGGCCTTag
gi|7 : caccatcgtttaaacatttaaccagaaCAAACCT-GA----TTTTTT--TA----A---A---AAT-T-A-TA-ATTTA----CACCTTTCCTA-CA-C-CTAT-GGA------AT-TA-TG-T-AT---TAT-GC--GAG-CA-TGTATTTG------TATTGTAC-----------------TGGCAG--AATC------AATTTGGT-TTTGTCAAA-------A--C--ACGCGA-A-TTCC--AT-TCCGCAA-TTTTAGTAA-----ACGACCTT-CACCTC--AATC-ATC----T-GTTGTCCA-ATTC--G-ATAT-T-AAAATTA-TGGATTAA-TCCT-GAGTGTGGCATA--A-T--A---GTTTTC-TTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-C-AAGCTTTG----AA-TGTTC-TT-TAAAC-AGCCC--AT-AT-G--A--AAGTTGGCTTTT
gi|8 : TT-C--AAA-AAGAATGTTTAATCCTATAATTACA-------AGTTTACA-TACAAACCT--AAAGTTCTTTTC-TT----A---------T-T-AATA-ATTTAT----ACCCTTCTCA-CA-C-TCAT-GAA------AT-TAACA---AT---TAT-GC--AGA-CA-TGCATATG------CATAGCAC-----------------TGGCAG--TATC------AATTTCGT-TTCGTCAGAGCGTTTCA-AT--ACC------------GT-TACA-AAAGTTTAATAA-----ACGACCTT-CACCTC--A----ATC-ATCT-GTTTTTCA-ATTC--GTTT-T-T-AAAACTAGTAG-TTAA-TCCT-TTGTGTGGCATA--ATA--C---CTCTG--TTTTAAAGGTGTGTCTTTGAATG-----AAT--Aagtcatggtcccatcctcggcagctgccatttgaatataatatattgttaagagttattcatttgtta
gi|9 : TTTGTTTTTATTT-CA-CGTCA-TA-AAAATTTT-G-T-AGATCGTTTTTATCAGTAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--ATT-AGGAAT----AAACCAGTA-TGACAC--TTAAATTT-ACA-TACAAACTT-GAA-GTTCTTTT--TT----A---A---A-T-T-A-TA-ATTTA----CACTTTTCCTA-CA-C-TCAT-TAA------AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTAAA
blockSeqs : T AT A C T T G C AT AGA ATGT TTAAC G ATAGTACGG CAAG ATA T T TCA C GTTT TA GG AAAT T T TGAAA ATCTATACATGT C A G C TATAT C C . A A TCACAT C A TT TCA G TA . C A CATGTA TTTACGAGTATAGTACT TA CCCTCA G A GATACCTGCTATTCTA A GA G GAGTC A AGATCTTCTCT T CGATT A C G T A ATAGCCA C TTG C G AAAAA TA AAAAT A T A AT A AT A G G AG AATTAA TA A A TT T A CA AC A A GC A C TTTTTTTT G A
blockSeqs : T A . . C . . . . . TT . . . . . . . AA . A AA . ACAA T . CGAA TTCGTAAA . C A . CA C . . . . G . . TA . . . . . A . . . . . A AATGCTGTATCCAA . GG A T . AAAATCAATT T AAATT . . . . . AATCCAA G TC G T . . . . . . AT . . . . . AA CGA T . . . . . A . T . T . . CATAT . C
blockSeqs : T A . . T . . . . . A . . . . . . . G . . AA . AAAT T . AAA TTAA . . . . TT C . . . . . . . T . . . . . A . . . . . A AATACCGGCAGTCA . GC A . . ATCATCACC . AATT . . . . . AAACC T T T T . . . . . . T . . . . . A GAT A . . . . . A . G . T . . ATATT . .
blockSeqs : T A . . T . . . . . T . . . . . . . A . . AA . TTA T . AAA TAAA . . . . TC C . . . . . . . T . . . . . A . . . . . A ACATAAAAATGCCG . G A . . AATCACCT . GTTC . . . . . TAGCA A T G G . . . . . . . . . . . . G AC A . . . . . . . . . G . . ATAT . .
blockSeqs : . A . . T . . . . . T . . . . . . . A . . A . AAA T . AAA CTTA . . . . C C . . . . . . . T . . . . . A . . . . . A ACACGCGAATTCCA . G A . . ATTCACCT . GATA . . . . . ATAAC G T G T . . . . . . . . . . . . A GA A . . . . . . . . . G . . ATTA . .
blockSeqs : . A . . T . . . . . T . . . . . . . A . . A . TTA T . AAA TTAA . . . . C C . . . . . . . T . . . . . T . . . . . A GCGTTTCAATACCG . G A . . ATCTATCC . GTTT . . . . . ATACC C T T G . . . . . . . . . . . . A CA A . . . . . . . . . G . . ATAA . .
blockSeqs : . . . . C . . . . . T . . . . . . . A . . A . TT T . GAA TA . . . . T . . . . . . . . T . . . . . A . . . . . . AATACCTGCATTC . A . . . AATCATCT . ATT . . . . . AATA T G C G . . . . . . . . . . . . G GA A . . . . . . . . . G . . ATA . .
blockSeqs : . . . . A . . . . . . . . . . . . . A . . A . AG . . GA TA . . . . C . . . . . . . . . . . . . . A . . . . . . CATCCTCTCG . . . . . AATCATCT . GAT . . . . . AAAA C G T G . . . . . . . . . . . . A GA A . . . . . . . . . G . . ATT . .
blockSeqs : . . . . . . . . . . . . . . . . . . GA . . . . . . . . . . . AAT . . . . . ATAG . G C . . . . . . . . . . . . . C AA T . . . . . . . . . G . . ATT . .
blockSeqs : . . . . GAT . . . . . . . . . . . . . . . . . . . . AA T . . . . . . . . . T . . ATT . .
blockSeqs : A . . . . . . . . . . . . . ATA . .
blockSeqs : .
blockSeqCons : A* NAA* AAA** ***************** G* ATAGC*******
originalCons : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA-AGGAAT----AAACCAGTAATGACAC--TTNNATTTTACA-TACAAACCT-GAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCCGGAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATA--A-A--C---ATNTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
finalCons : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACG---AA---T-AT-----AT-T---------GCATCA----TC---AG-TTCGTTTT-G--AAA-AGGAAT----AAACCAGTA-TGACAC--TTNAA-TTTACA-TACAAACCTAAA--GTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCCG-AAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATTC--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATAATAGC-------TNTT--TTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 111111111 11111 111111111 1111 11111111 111 3333333333333333 22222 111111 111111 33333333333333333 111111 33333333333333333333333333333 11111 3333333333333333 1111 111111111 111 1111111 11 1 111111111
lowQualScore : 0 2 66 4 4 1 4 4 4 55 2 222222222 00000 4 666666666 8888 777 4 3 88 44 2222 8 4 4 11111111 4 4 111 0 0000000000000000 4 8 8 4 44444 1 4 4 4 4 777777 4 4 555 777 4 66 4 4 1 111111 22222222222222222 55 111111 4 5 77777777777777777777777777777 8 4 55555 0 4 6666666666666666 7 3 9999 3 3 3 3 0 3 3 0 111111111 1 1 99999 55 99999 666 3 2 444 3 55 3 3 3 0 999 0000000 66 3 3 44 3 3 11 44 2 3 33 3 3 888888888 3 6
lowQualScore : . . .. . . . . . . .. . ......... ..... . ......... .... ... . . .. .. .... . . . ........ . . ... . ................ . . . . ..... . . . . . ...... . . ... ... . .. . . . ...... ................. .. ...... . . ............................. . . ..... . . ................ . . .... . . . . . . . . ......... . . ..... .. ..... ... . . ... . .. . . . . ... ....... .. . . .. . . .. .. . . .. . . ......... . .
lowQualScore : 4 8 33 4 0 5 0 0 0 55 3 333333333 00000 0 000000000 5555 000 0 6 66 99 5555 9 4 4 11111111 4 4 444 8 3333333333333333 4 9 9 4 11111 1 4 4 4 4 222222 4 4 333 888 4 11 0 0 1 555555 00000000000000000 55 555555 0 7 77777777777777777777777777777 9 4 66666 9 4 8888888888888888 3 6 6666 6 6 6 6 5 6 6 8 111111111 0 4 11111 00 11111 555 6 1 000 6 00 6 6 6 5 888 9999999 22 3 3 66 3 3 22 66 3 3 88 3 3 444444444 3 7
consensus : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACGA---A---T-AT-----AT-T---------GCATCA----TCA---G-TTCGTTTT-G--AAA-AGGAAT----AAACCAGT-A-TGAC-AC---TT-NAATTT-ACAT-ACAAACCT--GAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCC-GAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATT-C--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATAATANC---TCTGTTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
Reference ( family-2850 ) : TTTTTTTTTATTTTCA-CGTCA-TA-AATATTTT-G-C-AGATCGTTTTT--CAGAAAACGA---A---T-AT-----AT-T---------GCATCA----TCA---G-TTCGTTTT-G--AAA-AGGAAT----AAACCAGT-A-TGAC-AC---TT-NAATTT-ACAT-ACAAACCT--AAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTCAAA-------A-AT--ACCTGC-A-T--C--GT-TCC-GAAATTTTAGTAA-----ACGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCA-ATT-C--G-TT-T-T-AAAATTA-TGGATTAA-TCCT-TAGTGTGGCATAATAGC---TNTTTTTTAAAGGTGCGTNTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCCTTTTC-AG-C-GGC-GAGA----AT-TNTTTACA-ATGG-ATGCTAG
gi|1 : A-AATATTTT-G-C-ATATCGTTTTT--CAGAAAACGA---A---T-AT-----AT-T---------GCATCA----TCA---G-GTCGTTTT-G--AAA-AGGAAT----A--CCAAT-G-TGAC-AT---TT-TCATTT-ACTT-GCAAACCT--GA----TTTTT--TT----C---A---AAT-T-A-TA-ATTTA----CACTTTTCCTA-CAAC-CCAT-GGA-------T-TA-CG-T-AT---TAT-GC--GAAACA-TGTATTTG------TATAGTATT----------------GGGCAA--AATC------AATTTGCT-TTTGTCAAA-------A--C--ACGTGA-A-TTCC--AT-TCC-GTAATTTTAATAA-----ATGACCTT-CACCTC--AATC-ATC----T-GTTGTCCA-ATTCC--A-TA-T-T-AAAATTA-TGGATTAA-TCCT-GAGTGTGGCAT-TTAGT---TTTGTTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-C-AAGCTTTG----AA-TGTTC-GT-TAAAC-AGCCC--AT-AT-C--A--AAGTTGGCTTTT
gi|10 : atcaccgtttaagcatttaaccaaaatttgACCTC--A----ATC-A-CCTGTTTTCCA-ACT-C--A-TT-T-TCAGAATTA-TGGATTAT-TCCT-TAGTATGGTATAAAACC---TCTTTTGTAAATGTGCGTCTTTGAATG-----AAT--AATGC-----TT-A-T-TTGA--TTGGTGA-TAACCA--TTTG-T-TA-ATGTT----AGCTTTG----AC-TGTCC-TT-TAAAC-ATTCC--AC-ATAA--A--AA-TCGGCCTCGTC-AG-C-GGC-GAGA----A--TATTTACT-CTGG-ATACTAagtccaggccccatcctcggcatctgccatttgaatatattgttaagagttattcatttgttataatatagggtctgggaaataaacatgatataa
gi|11 : TGTCCATATT-C--AATT-T-T-AAGATTA-TGGATTAA-TTCT-TAGTGTGGCATAATAGC---CATGTTTTAAAAGTGCGTGTTTTAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TTTG-T-TA-AGGAT-A-AAGCTTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AC-CA-A--AA-TTGGCTTTTTC-AT-T-GGC-GAGA----A--TATTTACA-ATGG-ATGCTAGta
gi|13 : TTTTTTTTTA-TTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACGA---AATGT-AT-----ATGTATAGTACGGGCAGAA----TCA---ATTTCGTTTT-GTCAAA-Aagg
gi|13 : catttaacctgaaGA-AA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTC-AA-------A-AT--ACCTGC-A-T--T--CTATCC-GAAA-TTTAGTAA-----ATGACCTT-CACCTC--tacctgcattctatccgaaatttagtaaatgaccttcacctc
gi|14 : catttaacctgaatttttttttatttcacgtcatacatattttgcagatcgtttttcagaaaacTCATCGTT--TA-AACATTTA-A-CCAGAATGTTTCT-----ATTGCAA---A-----AT-----AT-T---------TCATCA----TCA---G-TTCGTTTT-G--AAA--GGAAT----AAACCAGT-A-TTAC-AC---TT-TTATTT-ACAC-GCAAACCT--AAAGTTCTTTT--TT----
gi|15 : GTTTT---ATG-----AAT--ACCGA-----AT-A-T-T--G--TTGGTGAATATACA--TTTG-TGTA-AAGAT-AGAAGCATTGC---GA-TGTT--ATATAAAC-AACCC--ATTAC-C--A--AAATTGG-CTTTTC-AGCC-GGC-GAGAC---AT-ATTTGACA-ATGGAATGCTttttccattatttatttataa
gi|16 : A-----TT-A-T-TTG------GTGA-TAACCA--TTTG-T-TA-ATGAT-G-AAGCTTTGAATTAA-TGTTT--T-TAAGC-AACAC--AT-AT-C--A--AATTTGGCCTTTTC-AT-C-GAC-G-GATTTTTT-TTTTTACA-ATGG-ATACTta
gi|17 : aTTTGTTTTATTT-CA-CGTCA-TA-ATTATTTT-G-C-AGATCGTTTTT--CGGAAAACGA---A---A-AT-----AT-T---------GTATCA----TCA---G-TTCGTTTT-G---AA-AGGAAT----AAATCtagtt
gi|18 : aacatcatttaaacatttcaccagaaCTTTA----CA-TATT--AC-TAAAC-A---C--AT-TA-C--A--AA-TTGGCCTTTC---G-C-GGCCGAAG----AT-T-TTTACA-ATGG-ATGCGAG
gi|19 : CTC--A-T---TC-A-CCTGTTGTCCA-ATA-C--G-AT-TAT-AAAATTA-TGGATTAA-TCCT-TTGTGTGGCAggttacgcggctctaagtcaaaacagtat
gi|2 : TTTTGTTTTTTTTTC--CATCAATA-AA-ATTTT-GGC-AGATTGTTTTT--CAGAAAACGA---A---T-AT-----AT-T---------CCATCA----CCA---G-TTCGTTTT-GA-AAA-AGGAATA---AAACCAGT-A-TGAC-AC---AT-AAATTT-ACA--ACAAACCT---GAGTTCTTTT--T---------A---GAT-TAA-TA-ATTTAC---AACTTTTTTTA-CA-C-TCAT-GAC------AT-TA-CG-T-AT---TATGGC--AGA-GA-TGTAT-TG------TATAGTAC-----------------GGGCAG--AATC------AATTTCG--TTTGTC--A-------A-AT--G-CTGT-A-T--CCAAT-TCC-GAAGTTTTAGT-A-----ACGACCTT-CACCTC--A-AA-ATCAA-TT-GTTGTACA-ATT-CCGA-TT-T-A-AAAATCA-ATGATTAATTCTT-TAGTGTGGCATAATATT---TTTGTTTTAAAGGTGCGTGTTTTAATGAAAAAAATTAACTGGAAAATTT-ATT-TTGAATTTGGTGA-TAAACAATTTTG-T-TA-AGG-T-A-AG--TTTG----GA-TGTTC-AT-TAAAC-AACCC--AT-AT-C--A--AA-TTGGCTTTTTCAAG-CAAGC-GAGA----AT-ATTTTACA-ATGG-ATGTTAG
gi|20 : catcattgtttaaacgtttaactgaGCCTTTTC-AG-C-GGC-AAGA----AT-T-TTTACA-ATGG-ATGTTAGag
gi|21 : tgga-TTGGCTATTTC-AG-C-GGC-TAGA----AT-T-TTTACA-ATGG-ATGCTAGagg
gi|22 : GCCTTTTC-AG-C-AGC-TAGA----AT-TATTTACA-ATGG-ATGCTAGagg
gi|3 : TTTGTT-TTTTC--CGTCA-TA-ATTTTTTT-G-C-AGATCGTGTT---CAGAAA-CGAGAAA---T-ATTTAACAT-A---------GCATCACAAGTCATAAG-TTCGTTT-----GAA-GGAAAT----AAATCAGTTA-TAAC-AC---TT-TTATTT-ACATTACAA-CCT--AAAGTTCGTTT--TTCGTAA---A---AATCT-AGTA-ATTCAT---TA-TTTTCTTACCA-C-CCAT-AAATCACATGT-TA-CGTT-AT---TAT-GC--GGA-TA-TGCATATGCATGTACATAGTACTTTACGAGTATAGTACTGGCCAGTAAATTCCCTCAAATTTCTT-TTTGTCAAA-------C-AT---CCT-C---T--C--GT-TCC-AAAATTT--ATAAGAGTCACAGCCTCACATCTCAGA-TC-TTC-T-CT-CTTTTCCA-ATT-C--G-TTCT-T-AAAA--A-T---TTAA-------A---------AATA--------TTTTCA---GTGAATAATTGATT-------AT---TTGA-----TT-------------GGTTA-TAACCA--GTTG-C-TAGATGAT-A-AAGCTTTG----A---GTTCTAT-TAAAT-AACCC--AT-AT-CA-A--AA-TAGGCCTTTTC-AG-C-GGC-GAGA----ATATTTTTACAGATGG-agg
gi|4 : catacattgatatacatttaatcagcgTTTTTTTTTATTTTCA-CGTCA-TA-CATATTTT-G-C-AGATCGTTTTT--CAGAAAACGA---A---TTAT-----AT-T---------GCATCA----TCA---G-TTCGTTTTTG--AAA-AGGAAT----AAACCAGT-AATGAC-AC---TT-AAATTTTACAT-ACAAACCTTGAAAGTTCTTTT--TT----A---A---AAT-T-A-TA-ATTTAT---CACTTTTCCTA-CA-C-GC-T-GAAG-----AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTC-T-TTTGTCAAA-------A-AT--ACCGGC-AGT--C--AT-TCCGGAAATTTTAGTAA-----ATGACCTT-CACCTC--A-TC-ATC-A-CC-GTTGTCCATATT-CAAA-TT-T-T-AAGATTA-TGGATTAA-TTCTATAGTGTGGCATAA-ATCCAATGTTTTTTAAAAGTGCGTGTT--AATG-----AAT--ACTGA-----TT-T-T-TTGGATTTGGTGA-TAAACA--TTTG-T-TA-AGGAT-G-AAGCTTTG----GA-TGTTC-AT-TAAACAAACCC--AT-AC-C--A--AA-TTGGCTTTTTC-AT-T-GGC-GAGA----AT-AATTTACA-ATGG-ATGCTAG
gi|5 : TTTTTTTTATTT-CA-CGTCA-TACAATATTTTTG-C-AGATCGTTTTT--C-GAAAACG----A---T-AT-----AT-T---------GCATCA----T-A---G-TTCG-TTT-G--AAACAGGAAT----AAACCAGTAA-TGAC-AC---TTACAATTT-CAAT-ACAAACCTC-GAAGTTTTTTT--T---------A---AAT-T-A-TA-ATTTA----CA-TTTTCCTA-CA-CACCATAGAA------ATCCA-CT-TAATTCATAT-GCTATGA-CACTGTATATG------TATAGTAC-----------------TGG-AG--AATC------AATT--GTGTTTGTC-AA-------G-AT--ACCTGCTA-T--T--CTATTC-GAAATTTTAGTAAT----A----CTT-CA-CTC--A-TCTAT----CC-GTTGTCAT-ATT-C--A-AT-T-T-TAAGTTA-TGGATTAA-TTCT-TAGTATGGCAT-ATAGC---ATTGTTTTAAAGTGGTGTTATTTAATG-----AAT--ACT-A-----TTAA-TATTGA--TTGGTGA-TAAACA--TTTGAT-TA-AGGATAA-AAGCTTTG----GATTGTTC-AT-TAAAC-AACC------AT-CCAA--AA-ATGGC--TTTC-A--T-TTC-GAGA----A--TATTTACA-ATGGCATGCTA
gi|6 : gTTTGTTTTTATTT-CA-CGACA-TA-ACCATTTT-G-C-AGATCGTTTTT--CAGAAA--------------C-----AT-T---------GCATCA----TCA---G-TTCGTTTT-G--AAA--GGAAG----AAACCAAC-A-TGAT-ACGGTTT-T--TTT-ACAT-ACAAACCT--AAAGTGCTTTTATCT----ATACATGTAAT-TCA-TACATGTATATATACCTTTCTGA-CA-C-CCAT-GAA------AT-TA-CG-T-AT---TAT-GC--GGA-CA-TGCATATG------TATAGTAT-----------------TGACAG--CATC------AATTTCGT-TTTTTCAAA-------ACATAAAAATGC------C--GT-TCC-GAAATTTTAATAA-----CCGAC----CATCTC-----------------TTGTCCA-CTT-C--G-AT-T-T----GTTA-------AA-TCCT-TTGTGTAGCGCAATAAC---TCTGTTTTAAAGGTGCATCTTTGAACG-----AAT--AACGA-----TT-G-T-T--AT-TTGGTGA-TGATCA--TTGG-T-TA-ATGAT-A-AAAC-TTG----AA-TGTTC-TT-TAAAC-CACCCTTGT-AT-C--AACAA-TTGGCCTTag
gi|7 : caccatcgtttaaacatttaaccagaaCAAACCT--GA---TTTTTT--TA----A---A---AAT-T-A-TA-ATTTA----CACCTTTCCTA-CA-C-CTAT-GGA------AT-TA-TG-T-AT---TAT-GC--GAG-CA-TGTATTTG------TATTGTAC-----------------TGGCAG--AATC------AATTTGGT-TTTGTCAAA-------A--C--ACGCGA-A-TTCC--AT-TCC-GCAATTTTAGTAA-----ACGACCTT-CACCTC--A----ATC-ATCT-GTTGTCCA-ATT-C--GATA-T-T-AAAATTA-TGGATTAA-TCCT-GAGTGTGGCATAATAGT---TTTCTTTTAAAGGTGCATTTTTGAATG-----AAT--ACTGA-----TT-A-T-TTGA--TTGGTGA-TAAACA--TCTG-T-TA-AGGAT-C-AAGCTTTG----AA-TGTTC-TT-TAAAC-AGCCC--AT-AT-G--A--AAGTTGGCTTTT
gi|8 : TT-C--AAA-AAGAATGTTTAATCC--T-A-TAATTAC------AAGTTT-ACAT-ACAAACCT--AAAGTTCTTTTC-TT----A---------T-T-AATA-ATTTAT----ACCCTTCTCA-CA-C-TCAT-GAA------AT-TAACA---AT---TAT-GC--AGA-CA-TGCATATG------CATAGCAC-----------------TGGCAG--TATC------AATTTCGT-TTCGTCAGAGCGTTTCA-AT--ACC------------GT-TAC-AAAAGTTTAATAA-----ACGACCTT-CACCTC--A----ATC-ATCT-GTTTTTCA-ATT-C--GTTT-T-T-AAAACTAGTAG-TTAA-TCCT-TTGTGTGGCATAATACC---TCTGTTTTAAAGGTGTGTCTTTGAATG-----AAT--Aagtcatggtcccatcctcggcagctgccatttgaatataatatattgttaagagttattcatttgtta
gi|9 : TTTGTTTTTATTT-CA-CGTCA-TA-AAAATTTT-G-T-AGATCGTTTTTATCAGTAAACGA---A---T-AT-----AT-T---------GCATCA----TCA---G-TTCGTTTT-G--ATT-AGGAAT----AAACCAGT-A-TGAC-AC---TT-AAATTT-ACAT-ACAAACTT--GAAGTTCTTTT--TT--------A---AAT-T-A-TA-ATTTA----CACTTTTCCTA-CA-C-TCAT-TAA------AT-TA-CG-T-AT---TAT-GC--AGA-CA-TGTATATG------TATAGTAC-----------------GGGCAG--AATC------AATTTCGT-TTTGTAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC