lowQualScore : 11111111
lowQualScore : 4444 2 9999999 22 77 333 2 2 22 44444444 2 2 2 4 4 33 4 44 2
lowQualScore : .... . ....... .. .. ... . . .. ........ . . . . . .. . .. .
lowQualScore : 5555 1 2222222 88 55 555 0 0 88 22222222 0 0 0 0 0 22 0 88 0
consensus : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
Reference ( gi|8 ) : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|14 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGA
gi|5 : TTGTCAAA----A-CAAA-------TG--TTTT-GCTGT---T-T-GCA--T--------GA-A-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGtg
gi|11 : TTGTCAAA----A-CAAA-------TG--TTT--GCCTA---T-T-GCA--T--------GG-A-TT-AAA-T-CC-TAAGTATTTC--TGA-ATGA
gi|6 : TTGTCAAA----A-CAAA-------T----TT--GCCGT---T-T-GCA--TTCAT----GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAGTGTtg
gi|7 : TTGTCAAA----A-C-AA-------TGTTTTT--G-CGT---T-T-GTA--T--------GG-A-TT-AAA-TACCAGAAGTA-TTC--TGA-ATGAGTG
gi|17 : TTGTCAAA----A-CAAA-------TG--TTT--GC------------A--T--------GGTA-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|21 : TTGTCAAA----A-CAA------------TTT--GCC-----------------------------------T-CC-GAAGTA-TTC--TGA-ATGAGTGTa
gi|20 : tttTTGTCAAA------CAA--------TG--TTT--GCCGT---T-T-GC--------------------------------GTA-TTC--TGA-ATGAGTGTa
gi|2 : tttTGTCAAA----A-CAAAATTATATTG--TTT--GCCGT---T-T-GCA--T--------GG-ATTT-AAA-T-CC-GAAGTA-TTC--TGAGATGAGTGa
gi|9 : TGTCAAA----A-CAAA-------TG--TTT--GCC-T---T-T-TCA--T--------GG-A-TTAAAA-T-CC-GAAGTA-TTCT-TGA-ATGAGTG
gi|4 : TGTCAAA----A-CAAA-------TG---TT--GCCGT---TAT-TCAACTGGCGGGAAGG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAc
gi|10 : GTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-TT-AAA-T-CC-GAGGTATTTC--TGA-ATGAGTGTt
gi|15 : gGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-CT-TAA-T-CA-GGA-TA-TTC--TGA-ATGAGTG
gi|19 : gGTCAAA----AACAAA-------TG--TTT--GCCGT---T-T-TCA--T--------GG-A-TT-AAA-T-CC-G-AGTA-TTC--TGA-
gi|12 : GTCAAACAACA-CAAG-------TG--TT---GCCGT---T-TTGCA--T--------GG-A-TT-AAA-T--C-GAAGTA-TT---TGA-ATGAGa
gi|16 : CAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGgt
gi|13 : taCAAA----A-CAAA-------TG--TTTTTGCCGT---T-T-GTA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGTg
gi|18 : CAAA----A-CAGAAC-----TG--TTT--GCCGT---T-T-GCA--T--------G--A-TT-AAA-T-CC-CAAGTA-TTC--TGA-
gi|3 : tgttaAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--TGG------GG-A-TT-AAA-TCCC-GAAGTA-TTCTTTGA-ATGAGTGT
gi|1 : gtccaA-------TG--TTTTCGCCACGAGT-T-GCG--T--------GG---TT-AAG-T-CC-GAGGTA-TTC--TGA-ATGAGTGTa
Alignments
lowQualScore : 11111111
lowQualScore : 4444 2 8888888 22 77 333 1 1 22 33333333 1 1 1 3 3 22 3 44 1
lowQualScore : .... . ....... .. .. ... . . .. ........ . . . . . .. . .. .
lowQualScore : 2222 0 8888888 66 11 333 9 9 66 66666666 9 9 9 8 8 66 8 55 9
consensus : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
Reference ( family-2837 ) : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|1 : A-------TG--TTTTCGCCACGAGT-T-GCG--T--------GG---TT-AAG-T-CC-GAGGTA-TTC--TGA-ATGAGTGT
gi|10 : aataaacagatcaatgtGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-TT-AAA-T-CC-GAGGTATTTC--TGA-ATGAGTGTa
gi|11 : gTTGTCAAA----A-CAAA-------TG--TTT--GCCTA---T-T-GCA--T--------GG-A-TT-AAA-T-CC-TAAGTATTTC--TGA-ATGA
gi|12 : GTCAAACAACA-CAAG-------TG--TT---GCCGT---T-TTGCA--T--------GG-A-TT-AAA-T--C-GAAGTA-TT---TGA-ATGAGtg
gi|13 : CAAA----A-CAAA-------TG--TTTTTGCCGT---T-T-GTA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGTgt
gi|14 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGA
gi|15 : GTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-CT-TAA-T-CA-GGA-TA-TTC--TGA-ATGAGTGtg
gi|16 : gCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAG
gi|17 : taTTGTCAAA----A-CAAA-------TG--TTT--GC------------A--T--------GGTA-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGTg
gi|18 : CAAA----A-CAGAAC-----TG--TTT--GCCGT---T-T-GCA--T--------G--A-TT-AAA-T-CC-CAAGTA-TTC--TGA-a
gi|19 : tgttaGTCAAA----AACAAA-------TG--TTT--GCCGT---T-T-TCA--T--------GG-A-TT-AAA-T-CC-G-AGTA-TTC--TGA-
gi|2 : TGTCAAA----A-CAAAATTATATTG--TTT--GCCGT---T-T-GCA--T--------GG-ATTT-AAA-T-CC-GAAGTA-TTC--TGAGATGAGTGa
gi|20 : TTGTCAAA------CAA--------TG--TTT--GCCGT---T-T-GC--------------------------------GTA-TTC--TGA-ATGAGTGT
gi|21 : tttTTGTCAAA----A-CAA------------TTT--GCC-----------------------------------T-CC-GAAGTA-TTC--TGA-ATGAGTGTa
gi|3 : tttAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--TGG------GG-A-TT-AAA-TCCC-GAAGTA-TTCTTTGA-ATGAGTGTa
gi|4 : gtccaTGTCAAA----A-CAAA-------TG---TT--GCCGT---TAT-TCAACTGGCGGGAAGG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAa
gi|5 : TTGTCAAA----A-CAAA-------TG--TTTT-GCTGT---T-T-GCA--T--------GA-A-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGt
gi|6 : TTGTCAAA----A-CAAA-------T----TT--GCCGT---T-T-GCA--TTCAT----GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAGTGT
gi|7 : TTGTCAAA----A-C-AA-------TGTTTTT--G-CGT---T-T-GTA--T--------GG-A-TT-AAA-TACCAGAAGTA-TTC--TGA-ATGAGTG
gi|8 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|9 : TGTCAAA----A-CAAA-------TG--TTT--GCC-T---T-T-TCA--T--------GG-A-TTAAAA-T-CC-GAAGTA-TTCT-TGA-ATGAGTG
Alignments
lowQualScore : 11111111
lowQualScore : 4444 2 8888888 22 77 333 1 1 22 33333333 1 1 1 3 3 22 3 44 1
lowQualScore : .... . ....... .. .. ... . . .. ........ . . . . . .. . .. .
lowQualScore : 2222 0 8888888 66 11 333 9 9 66 66666666 9 9 9 8 8 66 8 55 9
consensus : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
Reference ( family-2837 ) : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|1 : A-------TG--TTTTCGCCACGAGT-T-GCG--T--------GG---TT-AAG-T-CC-GAGGTA-TTC--TGA-ATGAGTGT
gi|10 : aataaacagatcaatgtGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-TT-AAA-T-CC-GAGGTATTTC--TGA-ATGAGTGTa
gi|11 : gTTGTCAAA----A-CAAA-------TG--TTT--GCCTA---T-T-GCA--T--------GG-A-TT-AAA-T-CC-TAAGTATTTC--TGA-ATGA
gi|12 : GTCAAACAACA-CAAG-------TG--TT---GCCGT---T-TTGCA--T--------GG-A-TT-AAA-T--C-GAAGTA-TT---TGA-ATGAGtg
gi|13 : CAAA----A-CAAA-------TG--TTTTTGCCGT---T-T-GTA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGTgt
gi|14 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGA
gi|15 : GTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-CT-TAA-T-CA-GGA-TA-TTC--TGA-ATGAGTGtg
gi|16 : gCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAG
gi|17 : taTTGTCAAA----A-CAAA-------TG--TTT--GC------------A--T--------GGTA-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGTg
gi|18 : CAAA----A-CAGAAC-----TG--TTT--GCCGT---T-T-GCA--T--------G--A-TT-AAA-T-CC-CAAGTA-TTC--TGA-a
gi|19 : tgttaGTCAAA----AACAAA-------TG--TTT--GCCGT---T-T-TCA--T--------GG-A-TT-AAA-T-CC-G-AGTA-TTC--TGA-
gi|2 : TGTCAAA----A-CAAAATTATATTG--TTT--GCCGT---T-T-GCA--T--------GG-ATTT-AAA-T-CC-GAAGTA-TTC--TGAGATGAGTGa
gi|20 : TTGTCAAA------CAA--------TG--TTT--GCCGT---T-T-GC--------------------------------GTA-TTC--TGA-ATGAGTGT
gi|21 : tttTTGTCAAA----A-CAA------------TTT--GCC-----------------------------------T-CC-GAAGTA-TTC--TGA-ATGAGTGTa
gi|3 : tttAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--TGG------GG-A-TT-AAA-TCCC-GAAGTA-TTCTTTGA-ATGAGTGTa
gi|4 : gtccaTGTCAAA----A-CAAA-------TG---TT--GCCGT---TAT-TCAACTGGCGGGAAGG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAa
gi|5 : TTGTCAAA----A-CAAA-------TG--TTTT-GCTGT---T-T-GCA--T--------GA-A-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGt
gi|6 : TTGTCAAA----A-CAAA-------T----TT--GCCGT---T-T-GCA--TTCAT----GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAGTGT
gi|7 : TTGTCAAA----A-C-AA-------TGTTTTT--G-CGT---T-T-GTA--T--------GG-A-TT-AAA-TACCAGAAGTA-TTC--TGA-ATGAGTG
gi|8 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|9 : TGTCAAA----A-CAAA-------TG--TTT--GCC-T---T-T-TCA--T--------GG-A-TTAAAA-T-CC-GAAGTA-TTCT-TGA-ATGAGTG
blockSeqs : CAAC A ATTATAT TT TT . A T AC GGCGGGAA T T A A C AG T TT G
blockSeqs : . . AC . T . . . . TCAT . . . A A G T T .
blockSeqs : . . . . . . . . . GG . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqCons : ** ***
originalCons : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
finalCons : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
Alignments
lowQualScore : 11111111
lowQualScore : 4444 2 8888888 22 77 333 1 1 22 33333333 1 1 1 3 3 22 3 44 1
lowQualScore : .... . ....... .. .. ... . . .. ........ . . . . . .. . .. .
lowQualScore : 2222 0 8888888 66 11 333 9 9 66 66666666 9 9 9 8 8 66 8 55 9
consensus : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
Reference ( family-2837 ) : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|1 : A-------TG--TTTTCGCCACGAGT-T-GCG--T--------GG---TT-AAG-T-CC-GAGGTA-TTC--TGA-ATGAGTGT
gi|10 : aataaacagatcaatgtGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-TT-AAA-T-CC-GAGGTATTTC--TGA-ATGAGTGTa
gi|11 : gTTGTCAAA----A-CAAA-------TG--TTT--GCCTA---T-T-GCA--T--------GG-A-TT-AAA-T-CC-TAAGTATTTC--TGA-ATGA
gi|12 : GTCAAACAACA-CAAG-------TG--TT---GCCGT---T-TTGCA--T--------GG-A-TT-AAA-T--C-GAAGTA-TT---TGA-ATGAGtg
gi|13 : CAAA----A-CAAA-------TG--TTTTTGCCGT---T-T-GTA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGTgt
gi|14 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGA
gi|15 : GTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-ACA--T--------GG-A-CT-TAA-T-CA-GGA-TA-TTC--TGA-ATGAGTGtg
gi|16 : gCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAG
gi|17 : taTTGTCAAA----A-CAAA-------TG--TTT--GC------------A--T--------GGTA-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGTg
gi|18 : CAAA----A-CAGAAC-----TG--TTT--GCCGT---T-T-GCA--T--------G--A-TT-AAA-T-CC-CAAGTA-TTC--TGA-a
gi|19 : tgttaGTCAAA----AACAAA-------TG--TTT--GCCGT---T-T-TCA--T--------GG-A-TT-AAA-T-CC-G-AGTA-TTC--TGA-
gi|2 : TGTCAAA----A-CAAAATTATATTG--TTT--GCCGT---T-T-GCA--T--------GG-ATTT-AAA-T-CC-GAAGTA-TTC--TGAGATGAGTGa
gi|20 : TTGTCAAA------CAA--------TG--TTT--GCCGT---T-T-GC--------------------------------GTA-TTC--TGA-ATGAGTGT
gi|21 : tttTTGTCAAA----A-CAA------------TTT--GCC-----------------------------------T-CC-GAAGTA-TTC--TGA-ATGAGTGTa
gi|3 : tttAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--TGG------GG-A-TT-AAA-TCCC-GAAGTA-TTCTTTGA-ATGAGTGTa
gi|4 : gtccaTGTCAAA----A-CAAA-------TG---TT--GCCGT---TAT-TCAACTGGCGGGAAGG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAa
gi|5 : TTGTCAAA----A-CAAA-------TG--TTTT-GCTGT---T-T-GCA--T--------GA-A-TT-AAAAT-CC-GAAGTA-TTC--TGA-ATGAGTGt
gi|6 : TTGTCAAA----A-CAAA-------T----TT--GCCGT---T-T-GCA--TTCAT----GG-A-TT-AAA-T-CT--AAGTA-TTC--TGA-ATGAGTGT
gi|7 : TTGTCAAA----A-C-AA-------TGTTTTT--G-CGT---T-T-GTA--T--------GG-A-TT-AAA-TACCAGAAGTA-TTC--TGA-ATGAGTG
gi|8 : TTGTCAAA----A-CAAA-------TG--TTT--GCCGT---T-T-GCA--T--------GG-A-TT-AAA-T-CC-GAAGTA-TTC--TGA-ATGAGTGT
gi|9 : TGTCAAA----A-CAAA-------TG--TTT--GCC-T---T-T-TCA--T--------GG-A-TTAAAA-T-CC-GAAGTA-TTCT-TGA-ATGAGTG