lowQualScore : 1 333333333 1 11 9999999999999 11 22222 66666666666666666666666 1111111111 11 1
lowQualScore : 6 6 6 6 7 555555555 3 5 00 5555555555555 77 0 0 22 99 777 4 22222 3 3 3 33333333333333333333333 666 777 2 2 66 2 2 7 7 2222222222 22 5
lowQualScore : . . . . . ......... . . .. ............. .. . . .. .. ... . ..... . . . ....................... ... ... . . .. . . . . .......... .. .
lowQualScore : 0 0 0 0 0 000000000 2 0 88 9999999999999 99 1 3 33 22 000 0 88888 0 3 3 00000000000000000000000 999 888 5 5 44 5 4 3 2 3333333333 77 4
consensus : NNNNNNNNNNNNNNNNGTCGGCTGGCGTTAGGTTGCTAAATTAAATGAAAAGGCGGATCATATAGTTATCCT-CATCGAT-----TCCCCCCA--TTAATATTTGGATGTTA---C-CGGGGCGTTTAGCGCAT-A-GG-G-A--TTTC---A-AT-----TAA---A---A-A-CACGTTTTCAG-GTAAATAAATATT-------TC-TATTTCTAACT-TACCGTACTT
Reference ( gi|1 ) : AACATACAATTTTCAAGCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAGTTAGCCC-CATCGATCGCGATCCTCCCA--TTAATGCTTGAGTGTTA---C-CAAGGTGTTTAGCACAT-A-GG-ATG--TTTC---A-AT-----TAA---A---A-A-TATGTTTTCAG-GTAAATAGATATT-------TG-TATTTCTAACG-TACCTTACTT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGAT-----TCC-CCAA--TTGTTATTTCGATGTTA---C-C-GGGCAGTTAGAGCAT-ACGG-A-A--TTTC---A--------------------------TTTTCTA-GCAAATGGATATT-------TC-TATTTCTGATT-TACCGTA
gi|14 : AATTAAAGAACAGATCATATAGTTATCCT-CAT------CGATCCCCCAA--TTAATATTTGGATGTTG---A-CAGGG-GTTTAGCGCAT-A-AG--TGGACTTCATAA-AT-------A---A---A-A-TA----TTCCG-GTAAATA
gi|10 : TGAAAAGGCAAATC--ATAGTTATCCT-CAT--------------CCA--T------TTGATTGTTACTGC-CTAGGCATTTTGCGCAT-G-GG-GAA--TTTC-----AT-----GAAC--A---A-A-TTTGTATT-----TTAAT--GTATT-------TA-TATATCTAATG-TACCATACTTctat
gi|8 : GGATCATATGGTTATCCT-CAACGAT--------TCCCAAATTAATATTTAGATGTTA---CGCA--GTGTTTAACGTAT-A-GGGAT---TTTC---A--------TAA---ACA-A-ACTATCTTTTCAA-GTAAATAAATATT-------TC-TATTTCTAATT-TACCGTAC
gi|13 : tTTATCCT-CATCAATT------TTCTCA--ATAATATTTGGATGTTA---T-TG-GACGTTTAGAACAT-A-GG-GAA--TTTC---ATATAACTATAA---A---ACA-TACATAAT--G-GGACATGACTATT-------TC-TAATTTT-ACG-TAC
gi|16 : GATCCCACCA--CTAATGTTTGGATGTTA---C-CAAA-TGTTTAGTGTAT-G-AG-GGA--TTTC---A--------TAA---ATAAA-A-TATGTTTTCAA-GTAAATA--------------G-TATTTCTAACT-TAC
gi|15 : ctcatt--TCAGTATTTGGATGCTA---C-CG-GACGTTTAGTACAT-A-GG-GAA--TTTC---A--------TAAATGA---A-A-CATATTTTCAATCTAAATAACTATT-------TC-TAT
gi|18 : tacttcaccacatggattccacagTGGGTGTTA---C-CA-GGCGTGTAGCGCAT-A-AG-AAA--TTTC---A-AT-----TAA---A---A-A-TATGCTTTTGG-GAGAATAAATATT-------T
gi|3 : TGTTA---C-CTGGGCGTT------A--A-GG-A-A--TTTCGTAA-AT-----GAG---A---G-A-TAT--TTTCAA-GTAAATGGATATTTCTACAATG-TATTTCTCATT-TACTGTAC
gi|17 : ctcatcgatatGTTA---C-CAGGG-GTTTAGCACATTA-TT-ATA--ATT------AT-----TAA---A---A-A-TATGTTTTCAA-GTAAA---------------TGCTATTTTTAACT-TACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|19 : GCGCAT-A-GG-A-----------A-A-------AA---A---A-A-CACATTTTTAG-GTAA-TAAATATT-------TC-TATTTCTAACGTTACCGTACTaa
gi|20 : GCGCAT-A-GG-G-----------A-A-------AA---A---A-A-CGCATTTTTAG-GTAA-TAAATATT-------TC-TATTTCTAATT-TACCGTACTT
gi|22 : AA---A---A-A-CACATTTTTAG-GTAA-TAAATATT-------TC-TATTTCTAACT-TACCATACT
gi|21 : gcgcataggAA---A---C-A-CACATTTTTAG-GTAA-TAAATATT-------TC-TATTTCTAACT-TACCGTACT
gi|24 : acgcataggaaAA---A---A-A-CACATTTTTAG-GTAA-TAAATATT-------TC-TATT-CTAACT-TACC
gi|23 : gcgcataggAA---A---A-A-CACATTTTTAG-GTAA-TAAATATT-------TC-TATT-CTAACT-TACCat
gi|25 : gcgcataggATGTTTTCAG-GTAAATAAATATT-------TC-CATTTCTAACT-TATCGTAat
gi|30 : ATAAATATT-------TC-TATTTCTAACT-TACCGTACTTtctaa
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|12 ): AGTTCATAAATAACACGAATTTTCTAGTAAATGGATATTTCTACTTTAATGAACTGAATTCTAATTATCACTCGGGACACACCAATGCTTCGCTCCATCCAACAGACACATTGCATATACA
Unaligned ( gi|26 ): CGCATAGGAAAAACACATTTTTAGGCAATAAATTTTCTAACTTA
Unaligned ( gi|27 ): GCGCATAGGAAAAAACACATTTATTAGATAATAAATATTTTTA
Unaligned ( gi|28 ): GCGCATAGAGAAAAACACATTTTTAGGTAATAATATTCTAT
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA
Alignments
lowQualScore : 1111111111111 2222 66666666666666666666 1111
lowQualScore : 4 2 2 3 9 5 6 9999999999999 2 2222 3 2 2 22 88888888888888888888 555 4 1 1111 1 2 4444 6666666 2
lowQualScore : . . . . . . . ............. . .... . . . .. .................... ... . . .... . . .... ....... .
lowQualScore : 0 5 5 2 8 6 7 9999999999999 4 6666 5 1 1 99 22222222222222222222 555 0 9 0000 9 1 0000 5555555 4
consensus : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAG-TTATCCTCATCGAT-----TCCCCC-ATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC----AA-TA---A---A-AAC-ACG--TTTTCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
Reference ( family-2774 ) : NNNNNNNNNNNNNNNNGTCGGCTGGCGTTAGGTTGCTAAATTAAATGAAAAGGCGGATCATATAG-TTATCCTCATCGAT-----TCCCCCCATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC----AATTA---A---A-AAC-ACG--TTTTCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
gi|1 : GCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAG-TTAGCCCCATCGATCGCGATCCTCCCATTAATGCTTGAGTGTTACCA---AGGTGTTTAGCACAT-A-G--GATG-TTTC----AATTA---A---A-AAT-ATG--TTTTCAG-GTAAATAG----ATATTTG-------TATTTCTAAC-GTACCTTACTT
gi|10 : aacatacaattttcaaTGAAAAGGCAAATCATA--G-TTATCCTCATC--------------------CATTTGATTGTTACTGCCTAGGCATTTTGCGCAT-G-G--GGAA-TTTC-----AT---------G-AAC-AAA--TTTGTAT-TTTAAT------GTATTTA-------TATATCTAAT-GTACCATACTT
gi|12 : TTC----A--TA---A---ATAAC-ACGAATTTTCTA-GTAAATGG----ATATTTC-------TACTT-TAA
gi|13 : ag-TTATCCTCATCAAT-----TTTCTCAAT-AATATTTGGATGTTATT----GGACGTTTAGAACAT-A-G--GGAA-TTTCATATAACTAT--A---A-AAC-A-------------TACATAATGGGACATGAC-------TATTTCTAAT-TTTACGTACtgaactgaattctaattatcactcgggacacaccaatgcttcgctccatccaacagacacattgcatataca
gi|14 : AATTAAA-GAA----CAGATCATATAG-TTATCCTCATCGA------TCCCCCAATTAATATTTGGATGTTGACA---GGG-GTTTAGCGCAT-A-AGTGG-A-CTTC----A--TA---A---ATAAA-A----TATTCCG-GTAAATA
gi|15 : CCACATGGAT-----TCCACA-GTCAGTATTTGGATGCTACC----GGACGTTTAGTACAT-A-G--GGAA-TTTC----A--TA---AATGA-AAC-ATA--TTTTCAATCTAAATAA----CTATTTC-------TATctat
gi|16 : tacttcaCTCATTGAT------CCCACCACTAATGTTTGGATGTTACC----AAATGTTTAGTGTATGA-G--GG-A-TTTC----A--TAAATA---A-AAT-ATG--TTTTCAA-GTAAATAG------------------TATTTCTAAC-TTAC
gi|17 : GTTACCA---GGG-GTTTAGCACAT-------T-A-TTAT----AATTATTAA---A-AAT-ATG--TTTTCAA-GTAAATG-----------C-------TATTTTTAAC-TTACCGTACTT
gi|18 : TGGGTGTTACCA---GG-CGTGTAGCGCAT-A-A--GA-AATTTC----AATTA---A---A-AAT-ATG--CTTTTGG-GAGAATAA----ATATTTaa
gi|19 : GCGCAT-A-G--GA-A----------A--A---A---A-AAC-ACA--TTTTTAG-GTAA-TAA----ATATTTC-------TATTTCTAACGTTACCGTACT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGAT-----T-CCCCAATTGTTATTTCGATGTTACC----GGGCAGTTAGAGCAT-ACG--GA-A-TTTC----A----------------------TTTTCTA-GCAAATGG----ATATTTC-------TATTTCTGAT-TTACCGTA
gi|20 : GCGCAT-A-G--GG-A----------A--A---A---A-AAC-GCA--TTTTTAG-GTAA-TAA----ATATTTC-------TATTTCTAAT-TTACCGTACTT
gi|21 : CGCAT-A-G--GA-A-------------A---A---A-CAC-ACA--TTTTTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCGTACT
gi|22 : aGCGCAT-A-G--G----------------A---A---A-AAC-ACA--TTTTTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCATACT
gi|23 : GCGCAT-A-G--G----------------A---A---A-AAC-ACA--TTTTTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|24 : GCGCAT-A-G--G----------------A---A---A-AAC-ACA--TTTTTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|25 : -ATG--TTTTCAG-GTAAATAA----ATATTTC-------CATTTCTAAC-TTATCGTA
gi|26 : CGCAT-A-G--G----------------A---A---A-AAC-ACA--TTTTTAG-GCAA-TAA----AT--------------TTTCTAAC-TTAtctaa
gi|28 : GCGCAT-A-G--AG-A-----------------A---A-AAC-ACA--TTTTTAG-GT-AAT-A----ATA-TTC-------TAT
gi|3 : CTCATCGATATT-----GTTACCT---GGGCGTT------A--A-G--GA-A-TTTCGTA-AATGA---G---A-GAT-A----TTTTCAA-GTAAATGG----ATATTTCTACAATGTATTTCTCAT-TTACTGTAC
gi|30 : ATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|8 : GGATCATATGG-TTATCCTCAACGAT-----TCCCAA-ATTAATATTTAGATGTTAC-G---CAGTGTTTAACGTAT-A-G--GG-A-TTTT----CATAA---AC--A-AACTATC--TTTTCAA-GTAAATAA----ATATTTC-------TATTTCTAAT-TTACCGTACa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|27 ): GCGCATAGGAAAAAACACATTTATTAGATAATAAATATTTTTA
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA
Alignments
lowQualScore : 11111 2222 66666666666666666666666666
lowQualScore : 1 1 1 3 9 5 6 22222 5555 2222 3 2 2 22 77777777777777777777777777 666 1 1 7777 1 1 3 3333 6666666 2
lowQualScore : . . . . . . . ..... .... .... . . . .. .......................... ... . . .... . . . .... ....... .
lowQualScore : 0 0 0 2 8 6 7 55555 8888 6666 5 0 0 88 66666666666666666666666666 000 9 8 3333 8 8 8 9999 2222222 4
consensus : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAG-TTATCCTCATCGAT-----TCC-CCNATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
Reference ( family-2774 ) : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAG-TTATCCTCATCGAT-----TCC-CCCATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
gi|1 : GCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAG-TTAGCCCCATCGATCGCGATCCTCCCATTAATGCTTGAGTGTTACCA---AGGTGTTTAGCACAT-A-G--GATG-TTTC---A-ATT----A-----A---A-AAT-ATG--TTT-TCAG-GTAAATAG----ATATTTG-------TATTTCTAAC-GTACCTTACTT
gi|10 : aacatacaattttcaaTGAAAAGGCAAATCATA--G-TTATCCTCATC--------------------CATTTGATTGTTACTGCCTAGGCATTTTGCGCAT-G-G--GGAA-TTTC-----A-T--------------G-AAC-AAA--TTT-GTAT-TTTAAT------GTATTTA-------TATATCTAAT-GTACCATACTT
gi|12 : TTC---A---T----A-----A---ATAAC-ACGAATTT-TCTA-GTAAATGG----ATATTTC-------TACTT-TAA
gi|13 : ag-TTATCCTCATCAAT-----TTT-CTCAATAATATTTGGATGTTATT----GGACGTTTAGAACAT-A-G--GGAA-TTTC---ATA-T----AACTATA---A-AAC-A--------------TACATAATGGGACATGAC-------TATTTCTAAT-TTTACGTACtgaactgaattctaattatcactcgggacacaccaatgcttcgctccatccaacagacacattgcatataca
gi|14 : AATTAAA-GAA----CAGATCATATAG-TTATCCTCATCGAT-----CCC-CCAATTAATATTTGGATGTTGACA---GGG-GTTTAGCGCAT-A-AGTGG-A-CTTCATAA-A-T----A-----A---A-A--------TAT-TCCG-GTAAATA
gi|15 : CCACATGGAT-----TCC-ACAGTCAGTATTTGGATGCTACC----GGACGTTTAGTACAT-A-G--GGAA-TTTC-----A-T----A-----AATGA-AAC-ATA--TTT-TCAATCTAAATAA----CTATTTC-------TATctat
gi|16 : tacttcaCTCATTGAT-----CCC-ACCACTAATGTTTGGATGTTACC----AAATGTTTAGTGTATGA-G--GG-A-TTTC-----A-T----AAAT--A---A-AAT-ATG--TTT-TCAA-GTAAATAG------------------TATTTCTAAC-TTAC
gi|17 : GTTACCA---GGG-GTTTAGCACAT-------T-A-TTAT---A-A-TTATTA-----A---A-AAT-ATG--TTT-TCAA-GTAAATG-----------C-------TATTTTTAAC-TTACCGTACTT
gi|18 : TGGGTGTTACCA---GG-CGTGTAGCGCAT-A-A--GA-AATTTC---A-A-TT---A-----A---A-AAT-ATG--CTT-TTGG-GAGAATAA----ATATTTaa
gi|19 : GCGCAT-A-G--G-----------A-A-A----A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAACGTTACCGTACT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGAT-----TCC-CCAATTGTTATTTCGATGTTACC----GGGCAGTTAGAGCAT-ACG--GA-A-TTTC---A-----------------------------TTT-TCTA-GCAAATGG----ATATTTC-------TATTTCTGAT-TTACCGTA
gi|20 : GCGCAT-A-G--GG-A----------A------A-----A---A-AAC-GCA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAT-TTACCGTACTT
gi|21 : CGCAT-A-G--GA-A-----------------A-----A---A-CAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCGTACT
gi|22 : aGCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCATACT
gi|23 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|24 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|25 : -ATG--TTT-TCAG-GTAAATAA----ATATTTC-------CATTTCTAAC-TTATCGTA
gi|26 : CGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GCAA-TAA----AT--------------TTTCTAAC-TTAtctaa
gi|27 : GCGCAT-A-G--GA-A-----------------------A---A-AAC-ACA--TTTATTAG-ATAA-TAA----ATATTTT-------TA
gi|28 : GCGCAT-A-G--AG-A-----------------------A---A-AAC-ACA--TTT-TTAG-GT-AAT-A----ATA-TTC-------TAT
gi|3 : -CTCATCGATATT-----GTTACCT---GGGCGTT------A--A-G--GA-A-TTTCGTAA-A-T----G-----A---G-AG--ATA--TTT-TCAA-GTAAATGG----ATATTTCTACAATGTATTTCTCAT-TTACTGTAC
gi|30 : ATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|8 : GGATCATATGG-TTATCCTCAACGAT-----TCC-CAAATTAATATTTAGATGTTA-CG---CAGTGTTTAACGTAT-A-G--GG-A-TTTT---C-A-T----A-----AAC-A-AACTATC--TTT-TCAA-GTAAATAA----ATATTTC-------TATTTCTAAT-TTACCGTACa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA
Alignments
lowQualScore : 11111 2222 66666666666666666666666666
lowQualScore : 1 1 1 3 9 5 6 22222 5555 2222 3 2 2 22 77777777777777777777777777 666 1 1 7777 1 1 3 3333 6666666 2
lowQualScore : . . . . . . . ..... .... .... . . . .. .......................... ... . . .... . . . .... ....... .
lowQualScore : 0 0 0 2 8 6 7 55555 4444 6666 5 0 0 88 66666666666666666666666666 000 9 8 3333 8 8 8 9999 2222222 4
consensus : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGAT-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
Reference ( family-2774 ) : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGAT-----TCC-CCNATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
gi|1 : GCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAGTT-AGCCCCATCGATCGCGATCCTCCCATTAATGCTTGAGTGTTACCA---AGGTGTTTAGCACAT-A-G--GATG-TTTC---A-ATT----A-----A---A-AAT-ATG--TTT-TCAG-GTAAATAG----ATATTTG-------TATTTCTAAC-GTACCTTACTT
gi|10 : aacatacaattttcaaTGAAAAGGCAAATCATA--GTT-ATCCTCATC--------------------CATTTGATTGTTACTGCCTAGGCATTTTGCGCAT-G-G--GGAA-TTTC-----A-T--------------G-AAC-AAA--TTT-GTAT-TTTAAT------GTATTTA-------TATATCTAAT-GTACCATACTT
gi|12 : TTC---A---T----A-----A---ATAAC-ACGAATTT-TCTA-GTAAATGG----ATATTTC-------TACTT-TAA
gi|13 : agTT-ATCCTCATCAAT-----TTT-CTCAATAATATTTGGATGTTATT----GGACGTTTAGAACAT-A-G--GGAA-TTTC---ATA-T----AACTATA---A-AAC-A--------------TACATAATGGGACATGAC-------TATTTCTAAT-TTTACGTACtgaactgaattctaattatcactcgggacacaccaatgcttcgctccatccaacagacacattgcatataca
gi|14 : AATTAAA-GAA----CAGATCATATAGTT-ATCCTCATCGAT-----CCC-CCAATTAATATTTGGATGTTGACA---GGG-GTTTAGCGCAT-A-AGTGG-A-CTTCATAA-A-T----A-----A---A-A--------TAT-TCCG-GTAAATA
gi|15 : CCACATGGAT-----TCC-ACAGTCAGTATTTGGATGCTACC----GGACGTTTAGTACAT-A-G--GGAA-TTTC-----A-T----A-----AATGA-AAC-ATA--TTT-TCAATCTAAATAA----CTATTTC-------TATctat
gi|16 : tacttcaCTCATTGAT-----CCC-ACCACTAATGTTTGGATGTTACC----AAATGTTTAGTGTATGA-G--GG-A-TTTC-----A-T----AAAT--A---A-AAT-ATG--TTT-TCAA-GTAAATAG------------------TATTTCTAAC-TTAC
gi|17 : GTTACCA---GGG-GTTTAGCACAT-------T-A-TTAT---A-A-TTATTA-----A---A-AAT-ATG--TTT-TCAA-GTAAATG-----------C-------TATTTTTAAC-TTACCGTACTT
gi|18 : TGGGTGTTACCA---GG-CGTGTAGCGCAT-A-A--GA-AATTTC---A-A-TT---A-----A---A-AAT-ATG--CTT-TTGG-GAGAATAA----ATATTTaa
gi|19 : GCGCAT-A-G--G-----------A-A-A----A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAACGTTACCGTACT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGAT-----TCC-CCAATTGTTATTTCGATGTTACC----GGGCAGTTAGAGCAT-ACG--GA-A-TTTC---A-----------------------------TTT-TCTA-GCAAATGG----ATATTTC-------TATTTCTGAT-TTACCGTA
gi|20 : GCGCAT-A-G--GG-A----------A------A-----A---A-AAC-GCA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAT-TTACCGTACTT
gi|21 : CGCAT-A-G--GA-A-----------------A-----A---A-CAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCGTACT
gi|22 : aGCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCATACT
gi|23 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|24 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|25 : -ATG--TTT-TCAG-GTAAATAA----ATATTTC-------CATTTCTAAC-TTATCGTA
gi|26 : CGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GCAA-TAA----AT--------------TTTCTAAC-TTAtctaa
gi|27 : GCGCAT-A-G--GA-A-----------------------A---A-AAC-ACA--TTTATTAG-ATAA-TAA----ATATTTT-------TA
gi|28 : GCGCAT-A-G--AG-A-----------------------A---A-AAC-ACA--TTT-TTAG-GT-AAT-A----ATA-TTC-------TAT
gi|3 : TGTTACCT---GGGCGTT------A--A-G--GA-A-TTTCGTAA-A-T----G-----A---G-AG--ATA--TTT-TCAA-GTAAATGG----ATATTTCTACAATGTATTTCTCAT-TTACTGTAC
gi|30 : ctcatcgatatATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|8 : GGATCATATGGTT-ATCCTCAACGAT-----TCC-CAAATTAATATTTAGATGTTA-CG---CAGTGTTTAACGTAT-A-G--GG-A-TTTT---C-A-T----A-----AAC-A-AACTATC--TTT-TCAA-GTAAATAA----ATATTTC-------TATTTCTAAT-TTACCGTACa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA
Alignments
lowQualScore : 11111 2222 66666666666666666666666666
lowQualScore : 1 1 1 3 9 5 6 5 22222 66 2 2222 3 2 2 22 77777777777777777777777777 666 1 1 7777 1 1 3 3333 6666666 2
lowQualScore : . . . . . . . . ..... .. . .... . . . .. .......................... ... . . .... . . . .... ....... .
lowQualScore : 0 0 0 2 8 6 7 0 55555 44 0 6666 5 0 0 88 66666666666666666666666666 000 9 8 3333 8 8 8 9999 2222222 4
consensus : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
Reference ( family-2774 ) : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
gi|1 : GCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAGTT-AGCCCCATCGA-TCGCGATCCTCCCATTAATGCTTGAGTGTTACCA---AGGTGTTTAGCACAT-A-G--GATG-TTTC---A-ATT----A-----A---A-AAT-ATG--TTT-TCAG-GTAAATAG----ATATTTG-------TATTTCTAAC-GTACCTTACTT
gi|10 : aacatacaattttcaaTGAAAAGGCAAATCATA--GTT-ATCCTCATC---------------------CATTTGATTGTTACTGCCTAGGCATTTTGCGCAT-G-G--GGAA-TTTC-----A-T--------------G-AAC-AAA--TTT-GTAT-TTTAAT------GTATTTA-------TATATCTAAT-GTACCATACTT
gi|12 : TTC---A---T----A-----A---ATAAC-ACGAATTT-TCTA-GTAAATGG----ATATTTC-------TACTT-TAA
gi|13 : agTT-ATCCTCATCAATT-----TTC-TCAA-TAATATTTGGATGTTATT----GGACGTTTAGAACAT-A-G--GGAA-TTTC---ATA-T----AACTATA---A-AAC-A--------------TACATAATGGGACATGAC-------TATTTCTAAT-TTTACGTACtgaactgaattctaattatcactcgggacacaccaatgcttcgctccatccaacagacacattgcatataca
gi|14 : AATTAAA-GAA----CAGATCATATAGTT-ATCCTCATCGA-T-----CCC-CCAATTAATATTTGGATGTTGACA---GGG-GTTTAGCGCAT-A-AGTGG-A-CTTCATAA-A-T----A-----A---A-A--------TAT-TCCG-GTAAATA
gi|15 : CCACATGGA-T-----TCC-ACAGTCAGTATTTGGATGCTACC----GGACGTTTAGTACAT-A-G--GGAA-TTTC-----A-T----A-----AATGA-AAC-ATA--TTT-TCAATCTAAATAA----CTATTTC-------TATctat
gi|16 : tacttcaCTCATTGA-T-----CCC-ACCACTAATGTTTGGATGTTACC----AAATGTTTAGTGTATGA-G--GG-A-TTTC-----A-T----AAAT--A---A-AAT-ATG--TTT-TCAA-GTAAATAG------------------TATTTCTAAC-TTAC
gi|17 : GTTACCA---GGG-GTTTAGCACAT-------T-A-TTAT---A-A-TTATTA-----A---A-AAT-ATG--TTT-TCAA-GTAAATG-----------C-------TATTTTTAAC-TTACCGTACTT
gi|18 : TGGGTGTTACCA---GG-CGTGTAGCGCAT-A-A--GA-AATTTC---A-A-TT---A-----A---A-AAT-ATG--CTT-TTGG-GAGAATAA----ATATTTaa
gi|19 : GCGCAT-A-G--G-----------A-A-A----A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAACGTTACCGTACT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGA-T-----TCC-CCAATTGTTATTTCGATGTTACC----GGGCAGTTAGAGCAT-ACG--GA-A-TTTC---A-----------------------------TTT-TCTA-GCAAATGG----ATATTTC-------TATTTCTGAT-TTACCGTA
gi|20 : GCGCAT-A-G--GG-A----------A------A-----A---A-AAC-GCA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAT-TTACCGTACTT
gi|21 : CGCAT-A-G--GA-A-----------------A-----A---A-CAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCGTACT
gi|22 : aGCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCATACT
gi|23 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|24 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|25 : -ATG--TTT-TCAG-GTAAATAA----ATATTTC-------CATTTCTAAC-TTATCGTA
gi|26 : CGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GCAA-TAA----AT--------------TTTCTAAC-TTAtctaa
gi|27 : GCGCAT-A-G--GA-A-----------------------A---A-AAC-ACA--TTTATTAG-ATAA-TAA----ATATTTT-------TA
gi|28 : GCGCAT-A-G--AG-A-----------------------A---A-AAC-ACA--TTT-TTAG-GT-AAT-A----ATA-TTC-------TAT
gi|3 : TGTTACCT---GGGCGTT------A--A-G--GA-A-TTTCGTAA-A-T----G-----A---G-AG--ATA--TTT-TCAA-GTAAATGG----ATATTTCTACAATGTATTTCTCAT-TTACTGTAC
gi|30 : ctcatcgatatATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|8 : GGATCATATGGTT-ATCCTCAACGA-T-----TCC-CAAATTAATATTTAGATGTTA-CG---CAGTGTTTAACGTAT-A-G--GG-A-TTTT---C-A-T----A-----AAC-A-AACTATC--TTT-TCAA-GTAAATAA----ATATTTC-------TATTTCTAAT-TTACCGTACa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA
Alignments
lowQualScore : 11111 2222 66666666666666666666666666
lowQualScore : 1 1 1 3 9 5 6 5 22222 66 2 2222 3 2 2 22 77777777777777777777777777 666 1 1 7777 1 1 3 3333 6666666 2
lowQualScore : . . . . . . . . ..... .. . .... . . . .. .......................... ... . . .... . . . .... ....... .
lowQualScore : 0 0 0 2 8 6 7 0 55555 44 0 6666 5 0 0 88 66666666666666666666666666 000 9 8 3333 8 8 8 9999 2222222 4
consensus : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
Reference ( family-2774 ) : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
gi|1 : GCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAGTT-AGCCCCATCGA-TCGCGATCCTCCCATTAATGCTTGAGTGTTACCA---AGGTGTTTAGCACAT-A-G--GATG-TTTC---A-ATT----A-----A---A-AAT-ATG--TTT-TCAG-GTAAATAG----ATATTTG-------TATTTCTAAC-GTACCTTACTT
gi|10 : aacatacaattttcaaTGAAAAGGCAAATCATA--GTT-ATCCTCATC---------------------CATTTGATTGTTACTGCCTAGGCATTTTGCGCAT-G-G--GGAA-TTTC-----A-T--------------G-AAC-AAA--TTT-GTAT-TTTAAT------GTATTTA-------TATATCTAAT-GTACCATACTT
gi|12 : TTC---A---T----A-----A---ATAAC-ACGAATTT-TCTA-GTAAATGG----ATATTTC-------TACTT-TAA
gi|13 : agTT-ATCCTCATCAATT-----TTC-TCAA-TAATATTTGGATGTTATT----GGACGTTTAGAACAT-A-G--GGAA-TTTC---ATA-T----AACTATA---A-AAC-A--------------TACATAATGGGACATGAC-------TATTTCTAAT-TTTACGTACtgaactgaattctaattatcactcgggacacaccaatgcttcgctccatccaacagacacattgcatataca
gi|14 : AATTAAA-GAA----CAGATCATATAGTT-ATCCTCATCGA-T-----CCC-CCAATTAATATTTGGATGTTGACA---GGG-GTTTAGCGCAT-A-AGTGG-A-CTTCATAA-A-T----A-----A---A-A--------TAT-TCCG-GTAAATA
gi|15 : CCACATGGA-T-----TCC-ACAGTCAGTATTTGGATGCTACC----GGACGTTTAGTACAT-A-G--GGAA-TTTC-----A-T----A-----AATGA-AAC-ATA--TTT-TCAATCTAAATAA----CTATTTC-------TATctat
gi|16 : tacttcaCTCATTGA-T-----CCC-ACCACTAATGTTTGGATGTTACC----AAATGTTTAGTGTATGA-G--GG-A-TTTC-----A-T----AAAT--A---A-AAT-ATG--TTT-TCAA-GTAAATAG------------------TATTTCTAAC-TTAC
gi|17 : GTTACCA---GGG-GTTTAGCACAT-------T-A-TTAT---A-A-TTATTA-----A---A-AAT-ATG--TTT-TCAA-GTAAATG-----------C-------TATTTTTAAC-TTACCGTACTT
gi|18 : TGGGTGTTACCA---GG-CGTGTAGCGCAT-A-A--GA-AATTTC---A-A-TT---A-----A---A-AAT-ATG--CTT-TTGG-GAGAATAA----ATATTTaa
gi|19 : GCGCAT-A-G--G-----------A-A-A----A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAACGTTACCGTACT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGA-T-----TCC-CCAATTGTTATTTCGATGTTACC----GGGCAGTTAGAGCAT-ACG--GA-A-TTTC---A-----------------------------TTT-TCTA-GCAAATGG----ATATTTC-------TATTTCTGAT-TTACCGTA
gi|20 : GCGCAT-A-G--GG-A----------A------A-----A---A-AAC-GCA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAT-TTACCGTACTT
gi|21 : CGCAT-A-G--GA-A-----------------A-----A---A-CAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCGTACT
gi|22 : aGCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCATACT
gi|23 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|24 : GCGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|25 : -ATG--TTT-TCAG-GTAAATAA----ATATTTC-------CATTTCTAAC-TTATCGTA
gi|26 : CGCAT-A-G--G--------------------A-----A---A-AAC-ACA--TTT-TTAG-GCAA-TAA----AT--------------TTTCTAAC-TTAtctaa
gi|27 : GCGCAT-A-G--GA-A-----------------------A---A-AAC-ACA--TTTATTAG-ATAA-TAA----ATATTTT-------TA
gi|28 : GCGCAT-A-G--AG-A-----------------------A---A-AAC-ACA--TTT-TTAG-GT-AAT-A----ATA-TTC-------TAT
gi|3 : TGTTACCT---GGGCGTT------A--A-G--GA-A-TTTCGTAA-A-T----G-----A---G-AG--ATA--TTT-TCAA-GTAAATGG----ATATTTCTACAATGTATTTCTCAT-TTACTGTAC
gi|30 : ctcatcgatatATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|8 : GGATCATATGGTT-ATCCTCAACGA-T-----TCC-CAAATTAATATTTAGATGTTA-CG---CAGTGTTTAACGTAT-A-G--GG-A-TTTT---C-A-T----A-----AAC-A-AACTATC--TTT-TCAA-GTAAATAA----ATATTTC-------TATTTCTAAT-TTACCGTACa
blockSeqs : T G G T A T T T . T T GCCT C G C GT GAATTTCATATAACTAT ATG T T CGAA A T A TGGG TACAATG G
blockSeqs : T T G . . . C T A C . . . TATTATAATTATTA AC . . AA . . A . . .
blockSeqs : . . T . . . A C A C . . . GACTTCATAAATA . . . TA . . A . . .
blockSeqs : . . . . A T A T . . . AATTTCGTAAATG . . . TG . . A . . .
blockSeqs : . . . C T T C . . . GATTTCATAAAT . . . TG . . A . . .
blockSeqs : . . C . G C . . . AAATTTCAATTA . . . TG . . A . . .
blockSeqs : . . . . . C . . . GAATTTCATA . . . CA . . A . . .
blockSeqs : . T . . . GATTTTCATA . . . CA . . A . . .
blockSeqs : . . . . . GAATTTCAT . . . CA . . A . . .
blockSeqs : . . . . . AATTTCA . . . CA . . A . . .
blockSeqs : . . . AAAA . . . CA . . A . . .
blockSeqs : . . . GAAA . . . CA . . A . . .
blockSeqs : . . . AAA . . . TG . . A . . .
blockSeqs : . . . AA . . . CA . . A . . .
blockSeqs : . . . GA . . . CA . . A . . .
blockSeqs : . . . A . . . CA . . A . . .
blockSeqs : . . . A . . . TA . . . . .
blockSeqs : . . . A . . . TC . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : ***** C* GAATTTCATA****************
originalCons : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GG-A-TTTC---A-A-T----A-----A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
finalCons : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCCC-CAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCAT-A-G--GGAATTTCATA----------------A---A-AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444
lowQualScore : 1 1 1 3 9 5 6 5 22222 66 2 8888 55 33333333333333333333333333333333 1 8888 1 1 3 3333 6666666 2
lowQualScore : . . . . . . . . ..... .. . .... .. ................................ . .... . . . .... ....... .
lowQualScore : 0 0 0 2 8 6 7 0 55555 44 0 1111 55 66666666666666666666666666666666 8 4444 8 8 8 9999 2222222 4
consensus : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCATAGG-GAATT----TCA--TA-------A---A---AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
Reference ( family-2774 ) : NNNNNNNNNNNNNNNNGCCGGCCGGCGNTANGTTNCCGAATTAAATGAAAAGGCGGATCATATAGTT-ATCCTCATCGA-T-----TCC-CCAATTAATATTTGGATGTTACCG---GGGCGTTTAGCGCATAGG-GAATT----TCA--TA-------A---A---AAC-ACG--TTT-TCAG-GTAAATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTT
gi|1 : GCCAGCCGACGATATATTCCCGCATTAAATGAAAAGGCGGATCATATAGTT-AGCCCCATCGA-TCGCGATCCTCCCATTAATGCTTGAGTGTTACCA---AGGTGTTTAGCACATAGG-ATGTT----TCAATTA-------A---A---AAT-ATG--TTT-TCAG-GTAAATAG----ATATTTG-------TATTTCTAAC-GTACCTTACTT
gi|10 : aacatacaattttcaaTGAAAAGGCAAATCATA--GTT-ATCCTCATC---------------------CATTTGATTGTTACTGCCTAGGCATTTTGCGCATGGG-GAATT----TCA--T------------G---AAC-AAA--TTT-GTAT-TTTAAT------GTATTTA-------TATATCTAAT-GTACCATACTT
gi|12 : T----TCA--TA-------A---AT--AAC-ACGAATTT-TCTA-GTAAATGG----ATATTTC-------TACTT-TAA
gi|13 : agTT-ATCCTCATCAATT-----TTC-TCAA-TAATATTTGGATGTTATT----GGACGTTTAGAACATAGG-GAATT----TCA--TATAACTATA---A---AAC-A--------------TACATAATGGGACATGAC-------TATTTCTAAT-TTTACGTACtgaactgaattctaattatcactcgggacacaccaatgcttcgctccatccaacagacacattgcatataca
gi|14 : AATTAAA-GAA----CAGATCATATAGTT-ATCCTCATCGA-T-----CCC-CCAATTAATATTTGGATGTTGACA---GGG-GTTTAGCGCATAAGTGGACT----TCA--TA-------A---AT--AAA-A----TAT-TCCG-GTAAATA
gi|15 : CCACATGGA-T-----TCC-ACAGTCAGTATTTGGATGCTACCG---GA-CGTTTAGTACATAGG-GAATT----TCA--TA-------AATGA---AAC-ATA--TTT-TCAATCTAAATAA----CTATTTC-------TATctat
gi|16 : tacttcaCTCATTGA-T-----CCC-ACCACTAATGTTTGGATGTTACC----AAATGTTTAGTGTATGAG-GGATT----TCA--TAAAT----A---A---AAT-ATG--TTT-TCAA-GTAAATAG------------------TATTTCTAAC-TTAC
gi|17 : GTTACCA---GGG-GTTTAGCACAT-----TATTATAATTAT-TA-------A---A---AAT-ATG--TTT-TCAA-GTAAATG-----------C-------TATTTTTAAC-TTACCGTACTT
gi|18 : TGGGTGTTACCA---GG-CGTGTAGCGCATAAG-AAATT----TCAATTA-------A---A---AAT-ATG--CTT-TTGG-GAGAATAA----ATATTTaa
gi|19 : GCGCATAGG-AAA------------A-------A---A---AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAACGTTACCGTACT
gi|2 : GTCGGCTGGCGTTAGGTTGCTAAATTAAATGAATAGGTGGATTATAGAGTTTCCCCTCATCGA-T-----TCC-CCAATTGTTATTTCGATGTTACC----GGGCAGTTAGAGCATACG-GAATT----TCA----------------------------TTT-TCTA-GCAAATGG----ATATTTC-------TATTTCTGAT-TTACCGTA
gi|20 : GCGCATAGG-GAA------------A-------A---A---AAC-GCA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAT-TTACCGTACTT
gi|21 : CGCATAGG-AAA--------------------A---A---CAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCGTACT
gi|22 : aGCGCATAGG----------------A-------A---A---AAC-ACA--TTT-TTAG-GTAA-TAA----ATATTTC-------TATTTCTAAC-TTACCATACT
gi|23 : GCGCATAGG----------------A-------A---A---AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|24 : GCGCATAGG----------------A-------A---A---AAC-ACA--TTT-TTAG-GT-AATAA----ATATTTC-------TA-TTCTAAC-TTACCAT
gi|25 : -ATG--TTT-TCAG-GTAAATAA----ATATTTC-------CATTTCTAAC-TTATCGTA
gi|26 : CGCATAGG----------------A-------A---A---AAC-ACA--TTT-TTAG-GCAA-TAA----AT--------------TTTCTAAC-TTAtctaa
gi|27 : GCGCATAGG-AAA------------------------A---AAC-ACA--TTTATTAG-ATAA-TAA----ATATTTT-------TA
gi|28 : GCGCATAGA-GAA------------------------A---AAC-ACA--TTT-TTAG-GT-AAT-A----ATA-TTC-------TAT
gi|3 : TGTTACCT---GGGCGTT--------AAG-GAATT----TCG--TA-------A---ATGAGAG-ATA--TTT-TCAA-GTAAATGG----ATATTTCTACAATGTATTTCTCAT-TTACTGTAC
gi|30 : ctcatcgatatATAA----ATATTTC-------TATTTCTAAC-TTACCGTACTTatattttcatgcttcgctcggttcaacggtcactccattttataca
gi|8 : GGATCATATGGTT-ATCCTCAACGA-T-----TCC-CAAATTAATATTTAGATGTTA-CG---CAGTGTTTAACGTATAGG-GATTT----TCA--TA-------AAC-A---AACTATC--TTT-TCAA-GTAAATAA----ATATTTC-------TATTTCTAAT-TTACCGTACa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGTTTGATTTAAAAGAAAACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|5 ): TGAAAGAAAGACATGACGTTCGATTGTAACGGGTCACAATGACTTGTTTCCGTCCAGTTGACGTATTTTTCCCACGTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|6 ): CGTTAGATGTAACGATACAATAGCACTGTTTACGCCAGTGAGCGCGCATTAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATA
Unaligned ( gi|7 ): CGTTAGATGTAATGTCACACATGGCACTGTTTAACGCAAGCCTGACGTATAATTTCCGGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG
Unaligned ( gi|9 ): ACATCGACTGTTTTAGCACAGCTGACGTTATACATGTATTTCCCGCGTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): ACATCGACTGTTTACGCAAGCTGACGTTATACATGTATTTCCCGCGTTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|29 ): ACGATCAAATTAGCCACAAATGTTTTGTTTTCTTTA