lowQualScore : 1 8888888888 888888888888888888888 222222222222 666666666666666666666666666 222222222222222 1111 111111 66666 666666666666 11 111 11111 1 1 2222222 1111 222222222222 1111111111
lowQualScore : 7 2 2 1111111111 6 33 1 6 666666666666666666666 2 5 999 999999999999 2 4 4 111111111111111111111111111 777 1 1 1 99 44 444444444444444 5 5555 4 222222 4 2 0 77777 4 1 1 999999999999 8 9 3 00 777 333 3 00000 66 2 7 8 0 1 0000000 2222 1 2 999999999999 3 3 6666666666 55 3 55 5 4 66 5 888
lowQualScore : . . . .......... . .. . . ..................... . . ... ............ . . . ........................... ... . . . .. .. ............... . .... . ...... . . . ..... . . . ............ . . . .. ... ... . ..... .. . . . . . ....... .... . . ............ . . .......... .. . .. . . .. . ...
lowQualScore : 0 5 0 0000000000 0 33 0 7 333333333333333333333 3 0 666 444444444444 6 4 4 333333333333333333333333333 888 0 1 0 55 00 000000000000000 0 1111 3 888888 4 9 8 44444 4 9 1 111111111111 9 8 6 66 111 555 3 00000 55 8 0 7 7 5 6666666 2222 4 8 333333333333 6 6 6666666666 00 6 66 7 4 11 2 888
consensus : TTTCATNTTAGCTACTTANGCAGTTACTGACACTTATTACAAGACTTC-AGCAA--A--TCA-T----CAA-N--GAATAATCAAATCAA--GACTGA-----------CATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTNGGA----GGA-TCTTT-GA-GCACT------GGAT-TGTCATCATGCTCCT----CCAT-CTTGTTTGTTTTAGTG--TGACTAAAGTG-TTG-ATTGGACG-T-TTCG-TAGCCAATCAGAAN-CG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTT-GCT----CAG-T-TGTGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
Reference ( gi|1 ) : TTACATGTTAACCACTTGG--------TGACATTTATTACAAGATTTC-AGCAA--A--TC-------CAA-C--GAATAATCAAATCAA--AACTGA-----------CATGTTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAGA----GGA-TCTTT-AG-GTACT------GGAT-TGTCATCATGCTCCTATGACCAT-CTTGTTTGTTTTAGGGCCTAAATAAAGTG-TCG-ATCAGACG-T-TTTG-TAACCAATCAGAAG-CG-CCGTT-AAAAAGTTTAAGGACGTGAATAGATAACTCGTACACATT-ATATTATTTTAT-ATTGAACCGAACCGAATTT-CCT----CAG-T-TGTGAA-TCGAAAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACTGCG---GTGAATCGTTGCACC
gi|26 : TTTCATTTTAACCACTTAC--------TGACACTTACTACAAGACTTC-ACCAA--A--TC----------------ACAATCAAATCAA--GACTGA-----------CATGATTTCT-C-ATATTT-----TTA---CT-------------AACCA---AAATGCTCCCTCTC
gi|2 : CATGTTAGCTACTTAGGCAGTTACTGACACTT-TTACAGGACCCC-AGCAAC-A--TCATTA---CAAACAGGAATAATCAA-TCAA--GACTGA-----------CATGATTT-T-T-ATCTTTTA---CTA-------------------ACCA---AT-TACTCC-TCTCTT-GTATTTAAT-GG-TTTCG-----GGA-TCTTT-TGAGCACT------GGAT-TGTCATCATGCTCCT----CCATGCTTGTTTGTTT-AG----TGACTAAAGTG-T-G-ATTGGACG-T-TTTTCTAGCCAAATAGAAT-T---CGTT-AAAAAGTTCAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCATTCAT-ATTGAACCGAACCGAATTT-GCT----CTG-TGTGTGAA-T-GAGATTCGATTTGA--C-TGACAGA--A-TCGCGG-TTTCGAT-G--CACCGCA---GTGAATCGTTGCA
gi|4 : tCATGTTAGCTACTTAGGCAGTTACTGACACT-GTTAAGAGACTCCGAGCAA--ACATTAAA----CAA-CAAGAA-AATCAA-TCAA--GACTG------------C-TGATTTCT-T-------------TA---CT----TGACT--AA--CCA---AATTACTACCTA-CTTGGTATT-AATT-----TAAAACAGGGA-TCTTT-GA-GCACT------G-AT-T-TCATCATACTCCT----CCAT-CTTGTTT--TTTAGTG---AACTAAAGTGGTTG-ATTGGACG-TATTTT-TAGCCAATCAGAAATCGTCCGTT-TAAAA-CTCAAGGA-ATGAATAGATAACT-GTA-AAGTT-GCG----TTCAT-ATTGAAAC-AACAAAATTTGCCT----T-G-T---TGAA---GAGTTTCA--TTGGAACATGACAGA--ATTTGCG--TTTCGATGG--CACCGCGCGAATGAAACGTCTCACCacctct
gi|3 : ttATTTTAACTACTTAC--------TGAAACTTATTACAAGACTTC-ACAAA--A--TCATTAACCCAA-G--GAATAATCAAATCAA--GACTGA-----------CATGATTTCT-T-ATCTTTT----------TC----CATC--------CA---AAATATTCCCTCTCTTTGTATTT----GGCTTCAGA----GGA-ACTTT-GA-GCACT------GGAT-TGTCATCATGCTCCT----CCAT-CTTCTTTGTTTTAG----TGACTAAAGTG-TTG-ATTGGATG-T-TTTG-TAGCTAATCAGAAC-CG-CAGTG-AAAAAATTGAAGGAAATGAATAGATAACTTGTACACATT-ATATTCTTTTAT-ATTGAACCAAATCGAATTT-GCT----CTGAA-CGTGAA-TTGAGATTCGATTTGC--A-CAACAGA--T-TCGCGATTTTCGGT-G--CACCGCA---GTGAATCGTTGCACCtct
gi|6 : GACACTTATTTCATGATTTC-AGCGA--A--TCAATGGCCCAA-A--AAATAATCAAATCAA--GACTGG-----------CATGTTTTTT-TTAACTTTTA---CTA---CC----TATGTTCAAAACCA---AAATACTCCCTCTCTTTGTATTTAAATGG-TTGGGA----GGA-TCTCT-GG-GCACT------GGAT-T-----------CCT----CCAT-CTTGTTTGTTTTAA----TGACTAAAGTA-TTG-ATTGAAAG-T-CTTG-TAGCCAATCAGAAA-TG-TCGTT-AAAA-GTTGAAGGAAGTGAATAGATAACTTGTATACATT-ACAGTCTTTTAT-ATTGAACCGAAACAAATTT-GTT----CAG-T-TGTGGA-TCGAAAATCA-----------GACAGA--G-TCGCGGTTTTTGAC-G--CACCGCG---GTGAATCGTTGCACCt
gi|8 : TCATTTCAAAATTGC-AGCTATCA--TT-------CTG----GGACAATAAAA--AA--AACTGG-----------CATGTTTTTT-T-TTTTCTTT---TTAAGCTT----TAT-------ACCAGCCAAATAT--CCACCCATCGGATTTAAGTG-CGGGGGG----GGG-GCCAC-GA-GCACTTATCTCAGATAGGTCAACGTGCTCTC----CTAT-CG-GTTT--TTTAGGAC-----TGA--TGCTTGCATTAAACG-T-T--G-TAGC-AATCTG--G-GA-TCATT-GAACA--TTAAGAATCTGGATAGATAGCGTGTACACA---AT-TTATTT-----------------GAATTG-GCT-----AA-C-TGTGAA-TC-AAGATC-AGTCGA--C-TGACAGA--A-TGCCGGTTTTCAAT-GCACACCGCG---GGCGATTGTTTCATC
gi|28 : -------CAA-G--GAATAATCAGATCAAGTAACTGATCCAAGAGTGACATGTTTTCC-T-ATCTTTTA---TTA---CC----Ttc
gi|11 : GTTTTCTAT-ATCTTT-A---TAA---CCGAGCTATCTT-AAAACCA---AAATACTCC-TCTCTTCGTATTCAATTGGCTTGGGA----GGA-TCGTT-GA-GCACT------GAAT-TGTCATCATGCTTCGATCTCCAT-CT-GTTTGTTTTAGTGCCTAA-CA---TG-TTG-ATTGGACA-T-TT-G-TAACCAATCAGAAG-CG-TCGTT-GATAAGTTGAGAAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTT-GCT----CAG-T-TGTGAATTCGAAAATCGATTTGG--C-TGACAGACGA-TC-CGGTTTT
gi|12 : TTTTCT-T-ATCTTTTA---TAA---CCGAGCTATCT--TAAACCA---AAATACTCCCTCTCTTCGTATTCAATTGGCTTGGGA----GGA-TCGTT-GA-GCACT------GAAT-TGTCATCATGCTTCGATCTCCAT-CTTGTTTGTTTTAGTGCCT-AACA---TG-TTG-ATTGGACA---TTTG-TAACCAATCAGAAG-CG-TCGTT-GATAAGTTGAAGAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTT-GCT----CAG-T-TGTGAA-TCGAAAATCGATTTGG--C-TGACAGG--A-TCGCGGTTTt
gi|13 : TTTACATTTA---CC----T---T--AAACCCA---AAGTATTCCCACACTTTATA----ATT-----TAGG----GGAATCTCTGAG-AT-CG------GGAT-TGCTGTC-CACTTC---GTCCAT-TTTCCTTGTTTTAG----CAATTTTAGTG-TTA-ATTGGACG-T-TTCT-TAGCCAATTACAGT-AG-CCGCT-GAAAATATGGAAGAAGAAAATAAATAAGTGGTACATATT----TTATTCT----TTCAA-CGAACGGAA---------------T-TGTAAA-TCGAAAAGCGATTTGG--C-TCCAAGA--A-TCG--------------------CG---GTGAATCGTTGCACC
gi|17 : acgTT-GA-GCACC------AGAT-TAGCATCATGCCCAT-T--CCAT-CTTGTTTGTTTCAGTGAC---ATTA-GTG-TTA-ATTGGAGGGT-TTTC-TAGCCAATCAGAGC-CA-TCGTT-GAAAAGGTAAAGGA----AGTAGAT-AC-----CAC-----------------ATTGAAAAGAACTGAATTT-GTT----TTA-T-TGAGCA-CTGAGAATCACTTCAT--C-TGAAAGA--A-TTGCAGTTTTAGAT-G--CATTGCA---GTACATCATTGCATCt
gi|19 : G-ATTGGACG-G-TTC--TCGCCAATCTGAGA-TG-CTGTTTGAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCAT-ATTGTACCGAACCAAATTT-ATTCATACAA-T-TGTTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--CATCCCA---GTGAATCtct
gi|22 : gctG-ATTGGACG-G-TTC--TCGCCAATCTGAGA-TG-CTGTT-GAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCA--ATTGTACC-AACCAAATTT-ATTCATACAA-T-TGTTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AGAGCTGCAACGATTCACAAACTTTTCAATCACAAACTTTTCAATGCGACTCGATTGGTCGATTTTTGACATTCGGAATTTCGATTATTTTTTAATAGAAACTTTATTGATTACAACATTACTTTGCAATCCATAATCATCATTATTCAAACACTACAAATGAATATGAATTAAGGCAATATTGCAAAAATTAGTGTATAAAATTATCATAAAACTTTCTTTCTACTACAGAATTAAACTCAGACTTAGAGAAACTTCTAGAAATTAAGATAGTATGATAACAGAGATGTGGTAACCAGATTAAATACAAATCTTTATCAGATGAGGGCTCAGGGTGTTGGTATTTCAGTGATGAGTATTACCAGTCAATTAT
Unaligned ( gi|7 ): ACTTTTTGATTCGACTCGATTTCGATTTTTAACATTCGATTCGGTTATTTTCGATTTGATTATTTGAAGTAGGAACTTTATTACTTAACATTTACTTTCAGTCATAATCATCATTACTCAAACACTACAGTACAGATAATATGAATTAGGCATAATCAAAATTTTAGAGACAAAACATTAATTTGAAACAAGAATACATTCTAAACAACATTGACTGGATTAAATCATCACGTTTTTGTTAACCATCACATTAACTCAGACTTAGAGAAACTTCTAGAAATTAGATTTATGAGACCCAGTAGATTAAATACAAATCTTGAAAGATGTGATATTTCAGTGATTATGTC
Unaligned ( gi|9 ): GCAACGAGTCTCAAACTTTTCTATTTGACTCGAGTTTTGTATTTTTGATTCGATTATTTGAATAAAAACTTTATTATTCAACATTTATTTGCAGTCATAATCTTCATTACTCAAACACTACAGAAAATGTGAATTAGGCCTTATTAAATTTCAGTGACAAAAAATTAAATATAAAAACCCTTGATTGGATTAAATTATCATAAATTTCTTTAACTATCAATTTAACTCAGACTTCAAGAAACTTCTAGAAATTAGATTTATATTCATATTTTATATACAAAGGATTAGCTGAGAGGTGCGATATCCAGTTATGATCTTGCAATCAATTGTTC
Unaligned ( gi|10 ): TAGAGCTGCACGATATCCACAACTTTTTCGATTAGACCATCATCGATTTGACATATCCGATCCAGGTTATTTCATTCAATATTTAGATGAAACCTTTTAGTATTCAACACTCTCAGTCATAATCATCATAATGCAAACTAACAAATGATGAAAGCCAATTACAAATAAATCTTAGAACATCATAAAGTTCTTTTTACTACAAGATAGCTCAGACAAGAAAACGATCATATAAGAGTTGATACACAAGAAGACGGGTATCTAGATTAAAAAGAGCTATATATAGGCTCAGGTTGGCATCTCAGTGGATGAAATTTCAGTCAATTGTTC
Unaligned ( gi|14 ): AGCTGCAACGATTCACAAATTTTTTTATTCGACTCATTTTCAATTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACATTTACTTTCAGTCATAATCACCGTTACTCAAACACTACAAATGATATGAATTAGGCATTGTTACAAAAATACATTTTAAAAATTATCATAAATTTCTTTAACTATCAAATTAACATCAGACTTGGAGTAACTTCTAGAA
Unaligned ( gi|15 ): TTGAAACTTTATTATTCAACAATTACTTTCAGTCATAATTATTATTAATCAAACTACAAATGGCAGGAATCAGGCATTATTACAAAAATGCATTCTAAAATTTTCATAAATTTCTTTAACTATCAGATTAGCTCAGACTTAGAGAAACTTATTGAATTTAGTTATATGATACCAGAATCTTGAAAGATTGACTCAGGGTATGATGTTTCTGTGATGGCATTACTATGAAAATATTT
Unaligned ( gi|16 ): AGCTGCAACGATTCACAAACTTCGATTCGACTCGATTTCGATTTTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACACTTGCTTTCAGTCATAATCATCATTATTCAAACACTACAAATAATATGAATTAGGCAATATTGCAGAAAATTAATTCTAAAAATTGTCATAAATTTCTTTTACTATCAAATTAAC
Unaligned ( gi|18 ): TGCAATGATCCACAAACTGTTCGATTCGACTCGATTTCGAATTTTAACATTCGATTCGGTTATTGTCGATTCGATTATTTGAATAGGAACCTTCTTATTCAACATTTACTTTCAGTCAATAATCATCATCACTCAAACAAATATGAATTAGGCATTATCAAAAGTTCTGATTTCAGTCACGAAAAATTA
Unaligned ( gi|20 ): TTATCAAGAATTTAACATGATATGAAGAAGCATTTTTACAAAGTTAACAATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATT
Unaligned ( gi|21 ): ACGATCAAATTAACTCAGACTTAGTAGTAGGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTTCTATAGTAGATTTAAATACAAAATCTTTGAAAGATTGACTTAGAGGTGTGATATTTCCAGTGATTATATTTCCAACCAATTGTT
Unaligned ( gi|23 ): ACGATCAAATTAACTCAGACTTAATTAGAGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTCTATAGTAGATTTAAAATAAATCTTGAAAGATTGACTTAGAGTGTGATATTTCAGTGATTATATTTCCAACAATTTG
Unaligned ( gi|24 ): TTTGAACATTAGACTCCATTGTATTCAATTTGAATTTTGAAACAGTATAACTTGGTTATTCAACATTTACTTTCAACCATAATCATCGATACACATAATATAAAAGACACATTGTCTTTGAATTTAAATTTTGGAAAATT
Unaligned ( gi|25 ): ATTACAAAAGTACATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATTGGCT
Unaligned ( gi|27 ): CCAGAGACTCAGTAGATTAGATACAAATCTTGAAAGATTGACTCTGGGTGTGATATTTCAGTGATGATATTCCTGTCAATT
Unaligned ( gi|29 ): AATTTATATGGTTAACACGTTGGAATGAAACACCACTAA
Alignments
lowQualScore : 55555555 55555555555555555555 22222222222 11111 444444444444444444 111111 1111 4444 2222 22222222
lowQualScore : 1 88888888 0 5 5 44444444444444444444 2 0 66 33333333333 0 1 555 00000 666666666666666666 777 7 6666 1 777 4 111111 4 1 7777 4 4 8888 4 4444 3 3 3 3 44 3 1111 3 3 1 44 33 1 1 0 999 6 77 1 00000000 3 3 3 9999999999 44 3 99 4 4 55 777
lowQualScore : . ........ . . . .................... . . .. ........... . . ... ..... .................. ... . .... . ... . ...... . . .... . . .... . .... . . . . .. . .... . . . .. .. . . . ... . .. . ........ . . . .......... .. . .. . . .. ...
lowQualScore : 0 22222222 1 7 7 88888888888888888888 8 9 99 88888888888 9 0 444 66666 666666666666666666 000 4 9999 0 888 0 555555 0 6 0000 0 0 5555 0 7777 1 6 6 3 66 3 2222 3 3 0 99 66 8 0 2 888 7 11 8 22222222 3 3 3 7777777777 66 3 88 1 0 55 888
consensus : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C-T----CCAT-CTTGTTTGTTTTAGTG----ACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
Reference ( family-2761 ) : TTTCATNTTAGCTACTTANGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------ANGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTNGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C-T----CCAT-CTTGTTTGTTTTAGTG--TGACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
gi|1 : TTACATGTTAACCACTTGG--------TGACATTTATTACAAGATTTC-AGCAA-ATC------------CA------ACGAATAATCAAATCAAA--AC-----------TGACATGTTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAGA---GGATCTTT-AGGTACT------GGAT-TGTCATCATGCT----C-C-TATGACCAT-CTTGTTTGTTTTAGGGCCTAAATAAAGT-G-TCG-ATCAGACG--T-TT--TGTAACCAATC-AG-AAGCG-CCGTT-AAAAAGTTTAAGGACGTGAATAGATAACTCGTACACATT-ATATTATTTTAT-ATTGAACCGAACCGAATTTCCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACTGCG---GTGAATCGTTGCACC
gi|11 : GTTTTCTAT-ATCTTT-A---TAA---CCGAGCTATCTT-AAAACCA---AAATACTCC-TCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCTTCGAT-C-T----CCAT-C-TGTTTGTTTTAGTG--C--CTAACAT-G-TTG-ATTGGACA--T-TT---GTAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAGAAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAATTCGAAAATCGATTTGG--C-TGACAGACGA-TC-CGGTTTT
gi|12 : TTTCT-T-ATCTTTTA---TAA---CCGAGCTATCT--TAAACCA---AAATACTCCCTCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCTTCGAT-C-T----CCAT-CTTGTTTGTTTTAGTG--C--CTAACAT-G-TTG-ATTGGACA--T-TT---GTAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAAGAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGG--A-TCGCGGTTTt
gi|13 : tTTTACATTTA---CC----T---T--AAACCCA---AAGTATTCCCACACTT--TAT--AATT----TAGGG---GAATCTCT-GAGATCG------GGAT-TGCTGTC-CACT----T-CGT----CCAT-TTTCCTTGTTTTAGCA----ATTTTAGT-G-TTA-ATTGGACG--T-TT--CTTAGCCAATT-AC-AGTAG-CCGCT-GAAAATATGGAAGAAGAAAATAAATAAGTGGTACATATT-TTATTCTTTCA--A------CGAACGGAA--------------T-TG-TAAA-TCGAAAAGCGATTTGG--C-TCCAAGA--A-T--------------------CGCG---GTGAATCGTTGCACC
gi|17 : acgTT-GAGCACC------AGAT-TAGCATCATGCC----CAT-T----CCAT-CTTGTTTGTTTCAGTG--ACATTA--GT-G-TTA-ATTGGAGGGTT-TT--C-TAGCCAATC-AG-AGCCA-TCGTT-GAAAAGGTAAAGGAAG----TAGATA----------------------CCAC-ATTGAAAAGAACTGAATTTGTT----TTA-T-TG-AGCA-CTGAGAATCACTTCAT--C-TGAAAGA--A-TTGCAGTTTTAGAT-G--CATTGCA---GTACATCATTGCATCt
gi|19 : -G-CTG-ATTGGACG--G-TT--C-TCGCCAATC-TG-AGATG-CTGTTTGAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCAT-ATTGTACCGAACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--CATCCCA---GTGAATCtct
gi|2 : TCATGTTAGCTACTTAGGCAGTTACTGACACTT-TTACAGGACCCC-AGCAACATCA-----T-----TACAAAC-AGGAATAATCAA-TCAAG--AC-----------TGACATGATTT-T-T-ATCTTTTA---CTA-------------------ACCA---AT-TACTCC-TCTCTT-GTATTTAAT-GGTTTCGG-----GATCTTTTGAGCACT------GGAT-TGTCATCATGCT----C-C-T----CCATGCTTGTTTGTTT-AGTG----ACTAAAGT-G-T-G-ATTGGACG--T-TTTTC-TAGCCAAAT-AG-AATT---CGTT-AAAAAGTTCAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCATTCAT-ATTGAACCGAACCGAATTTGCT----CTG-TGTG-TGAA-T-GAGATTCGATTTGA--C-TGACAGA--A-TCGCGG-TTTCGAT-G--CACCGCA---GTGAATCGTTGCA
gi|22 : G-ATTGGACG--G-TT--C-TCGCCAATC-TG-AGATG-CTGTT-GAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCA--ATTGTACC-AACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--acctct
gi|26 : TTTCATTTTAACCACTTA--------CTGACACTTACTACAAGACTTC-ACCAA-ATC------------------------ACAATCAAATCAAG--AC-----------TGACATGATTTCT-C-ATATTT-----TTA---CT-------------AACCA---AAATGCTCCCTCTCt
gi|28 : -----CA------AGGAATAATCAGATCAAGTAACTGATCCAAGAGTGACATGTTTTCC-T-ATCTTTTA---TTA---CC----T
gi|3 : ATTTTAACTACTTA--------CTGAAACTTATTACAAGACTTC-ACAAA-ATCA-----TTAACCCA------AGGAATAATCAAATCAAG--AC-----------TGACATGATTTCT-T-ATCTTTT----------TC----CATC--------CA---AAATATTCCCTCTCTTTGTATTT----GGCTTCAGA---GGAACTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C-T----CCAT-CTTCTTTGTTTTAGTG----ACTAAAGT-G-TTG-ATTGGATG--T-TT--TGTAGCTAATC-AG-AACCG-CAGTG-AAAAAATTGAAGGAAATGAATAGATAACTTGTACACATT-ATATTCTTTTAT-ATTGAACCAAATCGAATTTGCT----CTGAA-CG-TGAA-TTGAGATTCGATTTGC--A-CAACAGA--T-TCGCGATTTTCGGT-G--CACCGCA---GTGAATCGTTGCACC
gi|4 : TTCATGTTAGCTACTTAGGCAGTTACTGACAC-TGTTAAGAGACTCCGAGCAA-A-CA-----T-----TAAACAACAAGAA-AATC-AATCAAG--AC-----------TG-C-TGATTTCT--------------TTA---CT----TGACT----AACCA---AATTACTACCTA-CTTGGTA-TTAAT----TTAAAACAGGGATCTTT-GAGCACT-------GAT-T-TCATCATACT----C-C-T----CCAT-CTTGTT--TTTTAGTG---AACTAAAGTGG-TTG-ATTGGACG--TATT--TTTAGCCAATC-AGAAATCGTCCGTT-TAAAA-CTCAAGGAA-TGAATAGATAAC-TGTA-AAGTT-G----CGTTCAT-ATTGAAAC-AACAAAATTTGCC--------T-TGTTGAA---GAGTTTCA--TTGGAACATGACAGA--ATTTGCG--TTTCGATGG--CACCGCGCGAATGAAACGTCTCACCt
gi|6 : GACACTTATTTCATGATTTC-AGCGA-ATCAATGGCC-----CA------AAAAATAATCAAATCAAG--AC-----------TGGCATGTTTTTT-TTAACTTTTA---CTA---CC----TATGTTCAAAACCA---AAATACTCCCTCTCTTTGTATTTAAATGG-TTGGGA---GGATCTCT-GGGCACT------GGAT-T---------------C-C-T----CCAT-CTTGTTTGTTTTAATG----ACTAAAGT-A-TTG-ATTGAAAG--T-CT--TGTAGCCAATC-AG-AAATG-TCGTT--AAAAGTTGAAGGAAGTGAATAGATAACTTGTATACATT-ACAGTCTTTTAT-ATTGAACCGAAACAAATTTGTT----CAG-T-TG-TGGA-TCGAAAATCA-----------GACAGA--G-TCGCGGTTTTTGAC-G--CACCGCG---GTGAATCGTTGCACCtct
gi|8 : TCATTTCAAAATTGC-AGCTA--TCA-----T-----TC------TGGGACAATAAAA--AAA--AC-----------TGGCATGTTTTTT-T-TTTTCTTT---TTAAGCTT----TAT-------ACCAGCCAAATAT--CCACCCATCGGATTTAAGTG-CGGGGGG---GGGGCCAC-GAGCACTTATCTCAGATAGGTCAACGTGCT----C-T-C----CTAT-CG-GTTT--TTTAG-----GACTGA--T-GCTTGCATTAAACG--T-T----GTAGC-AATCTGG-GATCA----TT-GAACA--TTAAGAATCTGGATAGATAGCGTGTACACA-----ATT------T-ATT---------TGAATTGGCT-----AA-C-TG-TGAA-TCAAG-ATC-AGTCGA--C-TGACAGA--A-TGCCGGTTTTCAAT-GCACACCGCG---GGCGATTGTTTCATC
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGAGCTGCAACGATTCACAAACTTTTCAATCACAAACTTTTCAATGCGACTCGATTGGTCGATTTTTGACATTCGGAATTTCGATTATTTTTTAATAGAAACTTTATTGATTACAACATTACTTTGCAATCCATAATCATCATTATTCAAACACTACAAATGAATATGAATTAAGGCAATATTGCAAAAATTAGTGTATAAAATTATCATAAAACTTTCTTTCTACTACAGAATTAAACTCAGACTTAGAGAAACTTCTAGAAATTAAGATAGTATGATAACAGAGATGTGGTAACCAGATTAAATACAAATCTTTATCAGATGAGGGCTCAGGGTGTTGGTATTTCAGTGATGAGTATTACCAGTCAATTAT
Unaligned ( gi|7 ): ACTTTTTGATTCGACTCGATTTCGATTTTTAACATTCGATTCGGTTATTTTCGATTTGATTATTTGAAGTAGGAACTTTATTACTTAACATTTACTTTCAGTCATAATCATCATTACTCAAACACTACAGTACAGATAATATGAATTAGGCATAATCAAAATTTTAGAGACAAAACATTAATTTGAAACAAGAATACATTCTAAACAACATTGACTGGATTAAATCATCACGTTTTTGTTAACCATCACATTAACTCAGACTTAGAGAAACTTCTAGAAATTAGATTTATGAGACCCAGTAGATTAAATACAAATCTTGAAAGATGTGATATTTCAGTGATTATGTC
Unaligned ( gi|9 ): GCAACGAGTCTCAAACTTTTCTATTTGACTCGAGTTTTGTATTTTTGATTCGATTATTTGAATAAAAACTTTATTATTCAACATTTATTTGCAGTCATAATCTTCATTACTCAAACACTACAGAAAATGTGAATTAGGCCTTATTAAATTTCAGTGACAAAAAATTAAATATAAAAACCCTTGATTGGATTAAATTATCATAAATTTCTTTAACTATCAATTTAACTCAGACTTCAAGAAACTTCTAGAAATTAGATTTATATTCATATTTTATATACAAAGGATTAGCTGAGAGGTGCGATATCCAGTTATGATCTTGCAATCAATTGTTC
Unaligned ( gi|10 ): TAGAGCTGCACGATATCCACAACTTTTTCGATTAGACCATCATCGATTTGACATATCCGATCCAGGTTATTTCATTCAATATTTAGATGAAACCTTTTAGTATTCAACACTCTCAGTCATAATCATCATAATGCAAACTAACAAATGATGAAAGCCAATTACAAATAAATCTTAGAACATCATAAAGTTCTTTTTACTACAAGATAGCTCAGACAAGAAAACGATCATATAAGAGTTGATACACAAGAAGACGGGTATCTAGATTAAAAAGAGCTATATATAGGCTCAGGTTGGCATCTCAGTGGATGAAATTTCAGTCAATTGTTC
Unaligned ( gi|14 ): AGCTGCAACGATTCACAAATTTTTTTATTCGACTCATTTTCAATTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACATTTACTTTCAGTCATAATCACCGTTACTCAAACACTACAAATGATATGAATTAGGCATTGTTACAAAAATACATTTTAAAAATTATCATAAATTTCTTTAACTATCAAATTAACATCAGACTTGGAGTAACTTCTAGAA
Unaligned ( gi|15 ): TTGAAACTTTATTATTCAACAATTACTTTCAGTCATAATTATTATTAATCAAACTACAAATGGCAGGAATCAGGCATTATTACAAAAATGCATTCTAAAATTTTCATAAATTTCTTTAACTATCAGATTAGCTCAGACTTAGAGAAACTTATTGAATTTAGTTATATGATACCAGAATCTTGAAAGATTGACTCAGGGTATGATGTTTCTGTGATGGCATTACTATGAAAATATTT
Unaligned ( gi|16 ): AGCTGCAACGATTCACAAACTTCGATTCGACTCGATTTCGATTTTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACACTTGCTTTCAGTCATAATCATCATTATTCAAACACTACAAATAATATGAATTAGGCAATATTGCAGAAAATTAATTCTAAAAATTGTCATAAATTTCTTTTACTATCAAATTAAC
Unaligned ( gi|18 ): TGCAATGATCCACAAACTGTTCGATTCGACTCGATTTCGAATTTTAACATTCGATTCGGTTATTGTCGATTCGATTATTTGAATAGGAACCTTCTTATTCAACATTTACTTTCAGTCAATAATCATCATCACTCAAACAAATATGAATTAGGCATTATCAAAAGTTCTGATTTCAGTCACGAAAAATTA
Unaligned ( gi|20 ): TTATCAAGAATTTAACATGATATGAAGAAGCATTTTTACAAAGTTAACAATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATT
Unaligned ( gi|21 ): ACGATCAAATTAACTCAGACTTAGTAGTAGGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTTCTATAGTAGATTTAAATACAAAATCTTTGAAAGATTGACTTAGAGGTGTGATATTTCCAGTGATTATATTTCCAACCAATTGTT
Unaligned ( gi|23 ): ACGATCAAATTAACTCAGACTTAATTAGAGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTCTATAGTAGATTTAAAATAAATCTTGAAAGATTGACTTAGAGTGTGATATTTCAGTGATTATATTTCCAACAATTTG
Unaligned ( gi|24 ): TTTGAACATTAGACTCCATTGTATTCAATTTGAATTTTGAAACAGTATAACTTGGTTATTCAACATTTACTTTCAACCATAATCATCGATACACATAATATAAAAGACACATTGTCTTTGAATTTAAATTTTGGAAAATT
Unaligned ( gi|25 ): ATTACAAAAGTACATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATTGGCT
Unaligned ( gi|27 ): CCAGAGACTCAGTAGATTAGATACAAATCTTGAAAGATTGACTCTGGGTGTGATATTTCAGTGATGATATTCCTGTCAATT
Unaligned ( gi|29 ): AATTTATATGGTTAACACGTTGGAATGAAACACCACTAA
Alignments
lowQualScore : 55555555 55555555555555555555 22222222222 11111 444444444444444444 111111 1111111111111111 2222 22222222
lowQualScore : 11111111 0 5 5 44444444444444444444 0 0 66 33333333333 0 1 555 00000 666666666666666666 777 7 6666 1 777 4 111111 4 1 4444444444444444 4 0 8888 4 0 3 3 3 44 3 1111 3 3 1 44 33 1 1 0 999 6 77 1 00000000 3 3 3 9999999999 44 3 99 4 4 55 777
lowQualScore : ........ . . . .................... . . .. ........... . . ... ..... .................. ... . .... . ... . ...... . . ................ . . .... . . . . . .. . .... . . . .. .. . . . ... . .. . ........ . . . .......... .. . .. . . .. ...
lowQualScore : 66666666 1 7 7 88888888888888888888 2 9 99 88888888888 9 0 444 66666 666666666666666666 000 4 9999 9 888 0 555555 0 6 0000000000000000 0 8 5555 0 7 6 6 3 66 3 2222 3 3 0 99 66 8 0 2 888 7 11 8 22222222 3 3 3 7777777777 66 3 88 1 0 55 888
consensus : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
Reference ( family-2761 ) : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
gi|1 : TTACATGTTAACCACTTGG--------TGACATTTATTACAAGATTTC-AGCAA-ATC------------CA------ACGAATAATCAAATCAAA--AC-----------TGACATGTTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAGA---GGATCTTT-AGGTACT------GGAT-TGTCATCATGCT----C-C----TATGACCAT-CTTGTTTGTTTTAGGGCCTA-AATAAAGT-G-TCG-ATCAGACG--T-TT--TGTAACCAATC-AG-AAGCG-CCGTT-AAAAAGTTTAAGGACGTGAATAGATAACTCGTACACATT-ATATTATTTTAT-ATTGAACCGAACCGAATTTCCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACTGCG---GTGAATCGTTGCACC
gi|11 : GTTTTCTAT-ATCTTT-A---TAA---CCGAGCTATCTT-AAAACCA---AAATACTCC-TCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCT----T-CGATCT----CCAT-CT-GTTTGTTTTAG----TG-CCTAACAT-G-TTG-ATTGGACA--T-TT---GTAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAGAAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAATTCGAAAATCGATTTGG--C-TGACAGACGA-TC-CGGTTTT
gi|12 : TTTCT-T-ATCTTTTA---TAA---CCGAGCTATCT--TAAACCA---AAATACTCCCTCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCTTCGAT-C----T----CCAT-CTTGTTTGTTTTAG----TG-CCTAACAT-G-TTG-ATTGGACA--T-TT---GTAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAAGAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGG--A-TCGCGGTTTt
gi|13 : tTTTACATTTA---CC----T---T--AAACCCA---AAGTATTCCCACACTT--TAT--AATT----TAGGG---GAATCTCT-GAGATCG------GGAT-TGCTGTC-CACT----T-CG---T----CCAT-TTTCCTTGTTTTAG----CA-ATTTTAGT-G-TTA-ATTGGACG--T-TT--CTTAGCCAATT-AC-AGTAG-CCGCT-GAAAATATGGAAGAAGAAAATAAATAAGTGGTACATATT-TTATTCTTTCA--A------CGAACGGAA--------------T-TG-TAAA-TCGAAAAGCGATTTGG--C-TCCAAGA--A-T--------------------CGCG---GTGAATCGTTGCACC
gi|17 : acgTT-GAGCACC------AGAT-TAGCATCATGCC----CAT----T----CCAT-CTTGTTTGTTTCAG----TG-ACATTAGT-G-TTA-ATTGGAGGGTT-TT--C-TAGCCAATC-AG-AGCCA-TCGTT-GAAAAGGTAAAGGAAG----TAGATA----------------------CCAC-ATTGAAAAGAACTGAATTTGTT----TTA-T-TG-AGCA-CTGAGAATCACTTCAT--C-TGAAAGA--A-TTGCAGTTTTAGAT-G--CATTGCA---GTACATCATTGCATCt
gi|19 : -G-CTG-ATTGGACG--G-TT--C-TCGCCAATC-TG-AGATG-CTGTTTGAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCAT-ATTGTACCGAACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--CATCCCA---GTGAATCtct
gi|2 : TCATGTTAGCTACTTAGGCAGTTACTGACACTT-TTACAGGACCCC-AGCAACATCA-----T-----TACAAAC-AGGAATAATCAA-TCAAG--AC-----------TGACATGATTT-T-T-ATCTTTTA---CTA-------------------ACCA---AT-TACTCC-TCTCTT-GTATTTAAT-GGTTTCGG-----GATCTTTTGAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCATGCTTGTTTGTTT-AG----TG-ACTAAAGT-G-T-G-ATTGGACG--T-TTTTC-TAGCCAAAT-AG-AATT---CGTT-AAAAAGTTCAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCATTCAT-ATTGAACCGAACCGAATTTGCT----CTG-TGTG-TGAA-T-GAGATTCGATTTGA--C-TGACAGA--A-TCGCGG-TTTCGAT-G--CACCGCA---GTGAATCGTTGCA
gi|22 : G-ATTGGACG--G-TT--C-TCGCCAATC-TG-AGATG-CTGTT-GAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCA--ATTGTACC-AACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--acctct
gi|26 : TTTCATTTTAACCACTTA--------CTGACACTTACTACAAGACTTC-ACCAA-ATC------------------------ACAATCAAATCAAG--AC-----------TGACATGATTTCT-C-ATATTT-----TTA---CT-------------AACCA---AAATGCTCCCTCTCt
gi|28 : -----CA------AGGAATAATCAGATCAAGTAACTGATCCAAGAGTGACATGTTTTCC-T-ATCTTTTA---TTA---CC----T
gi|3 : ATTTTAACTACTTA--------CTGAAACTTATTACAAGACTTC-ACAAA-ATCA-----TTAACCCA------AGGAATAATCAAATCAAG--AC-----------TGACATGATTTCT-T-ATCTTTT----------TC----CATC--------CA---AAATATTCCCTCTCTTTGTATTT----GGCTTCAGA---GGAACTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTCTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGATG--T-TT--TGTAGCTAATC-AG-AACCG-CAGTG-AAAAAATTGAAGGAAATGAATAGATAACTTGTACACATT-ATATTCTTTTAT-ATTGAACCAAATCGAATTTGCT----CTGAA-CG-TGAA-TTGAGATTCGATTTGC--A-CAACAGA--T-TCGCGATTTTCGGT-G--CACCGCA---GTGAATCGTTGCACC
gi|4 : TTCATGTTAGCTACTTAGGCAGTTACTGACAC-TGTTAAGAGACTCCGAGCAA-A-CA-----T-----TAAACAACAAGAA-AATC-AATCAAG--AC-----------TG-C-TGATTTCT--------------TTA---CT----TGACT----AACCA---AATTACTACCTA-CTTGGTA-TTAAT----TTAAAACAGGGATCTTT-GAGCACT-------GAT-T-TCATCATACT----C-C----T----CCAT-CTTGTT--TTTTAG----TGAACTAAAGTGG-TTG-ATTGGACG--TATT--TTTAGCCAATC-AGAAATCGTCCGTT-TAAAA-CTCAAGGAA-TGAATAGATAAC-TGTA-AAGTT-G----CGTTCAT-ATTGAAAC-AACAAAATTTGCC--------T-TGTTGAA---GAGTTTCA--TTGGAACATGACAGA--ATTTGCG--TTTCGATGG--CACCGCGCGAATGAAACGTCTCACCt
gi|6 : GACACTTATTTCATGATTTC-AGCGA-ATCAATGGCC-----CA------AAAAATAATCAAATCAAG--AC-----------TGGCATGTTTTTT-TTAACTTTTA---CTA---CC----TATGTTCAAAACCA---AAATACTCCCTCTCTTTGTATTTAAATGG-TTGGGA---GGATCTCT-GGGCACT------GGAT-T---------------C-C----T----CCAT-CTTGTTTGTTTTAA----TG-ACTAAAGT-A-TTG-ATTGAAAG--T-CT--TGTAGCCAATC-AG-AAATG-TCGTT--AAAAGTTGAAGGAAGTGAATAGATAACTTGTATACATT-ACAGTCTTTTAT-ATTGAACCGAAACAAATTTGTT----CAG-T-TG-TGGA-TCGAAAATCA-----------GACAGA--G-TCGCGGTTTTTGAC-G--CACCGCG---GTGAATCGTTGCACCtct
gi|8 : TCATTTCAAAATTGC-AGCTA--TCA-----T-----TC------TGGGACAATAAAA--AAA--AC-----------TGGCATGTTTTTT-T-TTTTCTTT---TTAAGCTT----TAT-------ACCAGCCAAATAT--CCACCCATCGGATTTAAGTG-CGGGGGG---GGGGCCAC-GAGCACTTATCTCAGATAGGTCAACGTGCT----C-T----C----CTAT-CG-GTTT--TTTAG-----G-ACTGA--T-GCTTGCATTAAACG--T-T----GTAGC-AATCTGG-GATCA----TT-GAACA--TTAAGAATCTGGATAGATAGCGTGTACACA-----ATT------T-ATT---------TGAATTGGCT-----AA-C-TG-TGAA-TCAAG-ATC-AGTCGA--C-TGACAGA--A-TGCCGGTTTTCAAT-GCACACCGCG---GGCGATTGTTTCATC
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGAGCTGCAACGATTCACAAACTTTTCAATCACAAACTTTTCAATGCGACTCGATTGGTCGATTTTTGACATTCGGAATTTCGATTATTTTTTAATAGAAACTTTATTGATTACAACATTACTTTGCAATCCATAATCATCATTATTCAAACACTACAAATGAATATGAATTAAGGCAATATTGCAAAAATTAGTGTATAAAATTATCATAAAACTTTCTTTCTACTACAGAATTAAACTCAGACTTAGAGAAACTTCTAGAAATTAAGATAGTATGATAACAGAGATGTGGTAACCAGATTAAATACAAATCTTTATCAGATGAGGGCTCAGGGTGTTGGTATTTCAGTGATGAGTATTACCAGTCAATTAT
Unaligned ( gi|7 ): ACTTTTTGATTCGACTCGATTTCGATTTTTAACATTCGATTCGGTTATTTTCGATTTGATTATTTGAAGTAGGAACTTTATTACTTAACATTTACTTTCAGTCATAATCATCATTACTCAAACACTACAGTACAGATAATATGAATTAGGCATAATCAAAATTTTAGAGACAAAACATTAATTTGAAACAAGAATACATTCTAAACAACATTGACTGGATTAAATCATCACGTTTTTGTTAACCATCACATTAACTCAGACTTAGAGAAACTTCTAGAAATTAGATTTATGAGACCCAGTAGATTAAATACAAATCTTGAAAGATGTGATATTTCAGTGATTATGTC
Unaligned ( gi|9 ): GCAACGAGTCTCAAACTTTTCTATTTGACTCGAGTTTTGTATTTTTGATTCGATTATTTGAATAAAAACTTTATTATTCAACATTTATTTGCAGTCATAATCTTCATTACTCAAACACTACAGAAAATGTGAATTAGGCCTTATTAAATTTCAGTGACAAAAAATTAAATATAAAAACCCTTGATTGGATTAAATTATCATAAATTTCTTTAACTATCAATTTAACTCAGACTTCAAGAAACTTCTAGAAATTAGATTTATATTCATATTTTATATACAAAGGATTAGCTGAGAGGTGCGATATCCAGTTATGATCTTGCAATCAATTGTTC
Unaligned ( gi|10 ): TAGAGCTGCACGATATCCACAACTTTTTCGATTAGACCATCATCGATTTGACATATCCGATCCAGGTTATTTCATTCAATATTTAGATGAAACCTTTTAGTATTCAACACTCTCAGTCATAATCATCATAATGCAAACTAACAAATGATGAAAGCCAATTACAAATAAATCTTAGAACATCATAAAGTTCTTTTTACTACAAGATAGCTCAGACAAGAAAACGATCATATAAGAGTTGATACACAAGAAGACGGGTATCTAGATTAAAAAGAGCTATATATAGGCTCAGGTTGGCATCTCAGTGGATGAAATTTCAGTCAATTGTTC
Unaligned ( gi|14 ): AGCTGCAACGATTCACAAATTTTTTTATTCGACTCATTTTCAATTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACATTTACTTTCAGTCATAATCACCGTTACTCAAACACTACAAATGATATGAATTAGGCATTGTTACAAAAATACATTTTAAAAATTATCATAAATTTCTTTAACTATCAAATTAACATCAGACTTGGAGTAACTTCTAGAA
Unaligned ( gi|15 ): TTGAAACTTTATTATTCAACAATTACTTTCAGTCATAATTATTATTAATCAAACTACAAATGGCAGGAATCAGGCATTATTACAAAAATGCATTCTAAAATTTTCATAAATTTCTTTAACTATCAGATTAGCTCAGACTTAGAGAAACTTATTGAATTTAGTTATATGATACCAGAATCTTGAAAGATTGACTCAGGGTATGATGTTTCTGTGATGGCATTACTATGAAAATATTT
Unaligned ( gi|16 ): AGCTGCAACGATTCACAAACTTCGATTCGACTCGATTTCGATTTTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACACTTGCTTTCAGTCATAATCATCATTATTCAAACACTACAAATAATATGAATTAGGCAATATTGCAGAAAATTAATTCTAAAAATTGTCATAAATTTCTTTTACTATCAAATTAAC
Unaligned ( gi|18 ): TGCAATGATCCACAAACTGTTCGATTCGACTCGATTTCGAATTTTAACATTCGATTCGGTTATTGTCGATTCGATTATTTGAATAGGAACCTTCTTATTCAACATTTACTTTCAGTCAATAATCATCATCACTCAAACAAATATGAATTAGGCATTATCAAAAGTTCTGATTTCAGTCACGAAAAATTA
Unaligned ( gi|20 ): TTATCAAGAATTTAACATGATATGAAGAAGCATTTTTACAAAGTTAACAATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATT
Unaligned ( gi|21 ): ACGATCAAATTAACTCAGACTTAGTAGTAGGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTTCTATAGTAGATTTAAATACAAAATCTTTGAAAGATTGACTTAGAGGTGTGATATTTCCAGTGATTATATTTCCAACCAATTGTT
Unaligned ( gi|23 ): ACGATCAAATTAACTCAGACTTAATTAGAGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTCTATAGTAGATTTAAAATAAATCTTGAAAGATTGACTTAGAGTGTGATATTTCAGTGATTATATTTCCAACAATTTG
Unaligned ( gi|24 ): TTTGAACATTAGACTCCATTGTATTCAATTTGAATTTTGAAACAGTATAACTTGGTTATTCAACATTTACTTTCAACCATAATCATCGATACACATAATATAAAAGACACATTGTCTTTGAATTTAAATTTTGGAAAATT
Unaligned ( gi|25 ): ATTACAAAAGTACATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATTGGCT
Unaligned ( gi|27 ): CCAGAGACTCAGTAGATTAGATACAAATCTTGAAAGATTGACTCTGGGTGTGATATTTCAGTGATGATATTCCTGTCAATT
Unaligned ( gi|29 ): AATTTATATGGTTAACACGTTGGAATGAAACACCACTAA
Alignments
lowQualScore : 55555555 55555555555555555555 22222222222 11111 444444444444444444 111111 1111111111111111 2222 22222222
lowQualScore : 11111111 0 5 5 44444444444444444444 0 0 66 33333333333 0 1 555 00000 666666666666666666 777 7 6666 1 777 4 111111 4 1 4444444444444444 4 0 8888 4 0 3 3 3 44 3 1111 3 3 1 44 33 1 1 0 999 6 77 1 00000000 3 3 3 9999999999 44 3 99 4 4 55 777
lowQualScore : ........ . . . .................... . . .. ........... . . ... ..... .................. ... . .... . ... . ...... . . ................ . . .... . . . . . .. . .... . . . .. .. . . . ... . .. . ........ . . . .......... .. . .. . . .. ...
lowQualScore : 66666666 1 7 7 88888888888888888888 2 9 99 88888888888 9 0 444 66666 666666666666666666 000 4 9999 9 888 0 555555 0 6 0000000000000000 0 8 5555 0 7 6 6 3 66 3 2222 3 3 0 99 66 8 0 2 888 7 11 8 22222222 3 3 3 7777777777 66 3 88 1 0 55 888
consensus : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
Reference ( family-2761 ) : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
gi|1 : TTACATGTTAACCACTTGG--------TGACATTTATTACAAGATTTC-AGCAA-ATC------------CA------ACGAATAATCAAATCAAA--AC-----------TGACATGTTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAGA---GGATCTTT-AGGTACT------GGAT-TGTCATCATGCT----C-C----TATGACCAT-CTTGTTTGTTTTAGGGCCTA-AATAAAGT-G-TCG-ATCAGACG--T-TT--TGTAACCAATC-AG-AAGCG-CCGTT-AAAAAGTTTAAGGACGTGAATAGATAACTCGTACACATT-ATATTATTTTAT-ATTGAACCGAACCGAATTTCCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACTGCG---GTGAATCGTTGCACC
gi|11 : GTTTTCTAT-ATCTTT-A---TAA---CCGAGCTATCTT-AAAACCA---AAATACTCC-TCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCT----T-CGATCT----CCAT-CT-GTTTGTTTTAG----TG-CCTAACAT-G-TTG-ATTGGACA--T-TT---GTAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAGAAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAATTCGAAAATCGATTTGG--C-TGACAGACGA-TC-CGGTTTT
gi|12 : TTTCT-T-ATCTTTTA---TAA---CCGAGCTATCT--TAAACCA---AAATACTCCCTCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCTTCGAT-C----T----CCAT-CTTGTTTGTTTTAG----TG-CCTAACAT-G-TTG-ATTGGACA--T-TT---GTAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAAGAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGG--A-TCGCGGTTTt
gi|13 : tTTTACATTTA---CC----T---T--AAACCCA---AAGTATTCCCACACTT--TAT--AATT----TAGGG---GAATCTCT-GAGATCG------GGAT-TGCTGTC-CACT----T-CG---T----CCAT-TTTCCTTGTTTTAG----CA-ATTTTAGT-G-TTA-ATTGGACG--T-TT--CTTAGCCAATT-AC-AGTAG-CCGCT-GAAAATATGGAAGAAGAAAATAAATAAGTGGTACATATT-TTATTCTTTCA--A------CGAACGGAA--------------T-TG-TAAA-TCGAAAAGCGATTTGG--C-TCCAAGA--A-T--------------------CGCG---GTGAATCGTTGCACC
gi|17 : acgTT-GAGCACC------AGAT-TAGCATCATGCC----CAT----T----CCAT-CTTGTTTGTTTCAG----TG-ACATTAGT-G-TTA-ATTGGAGGGTT-TT--C-TAGCCAATC-AG-AGCCA-TCGTT-GAAAAGGTAAAGGAAG----TAGATA----------------------CCAC-ATTGAAAAGAACTGAATTTGTT----TTA-T-TG-AGCA-CTGAGAATCACTTCAT--C-TGAAAGA--A-TTGCAGTTTTAGAT-G--CATTGCA---GTACATCATTGCATCt
gi|19 : -G-CTG-ATTGGACG--G-TT--C-TCGCCAATC-TG-AGATG-CTGTTTGAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCAT-ATTGTACCGAACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--CATCCCA---GTGAATCtct
gi|2 : TCATGTTAGCTACTTAGGCAGTTACTGACACTT-TTACAGGACCCC-AGCAACATCA-----T-----TACAAAC-AGGAATAATCAA-TCAAG--AC-----------TGACATGATTT-T-T-ATCTTTTA---CTA-------------------ACCA---AT-TACTCC-TCTCTT-GTATTTAAT-GGTTTCGG-----GATCTTTTGAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCATGCTTGTTTGTTT-AG----TG-ACTAAAGT-G-T-G-ATTGGACG--T-TTTTC-TAGCCAAAT-AG-AATT---CGTT-AAAAAGTTCAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCATTCAT-ATTGAACCGAACCGAATTTGCT----CTG-TGTG-TGAA-T-GAGATTCGATTTGA--C-TGACAGA--A-TCGCGG-TTTCGAT-G--CACCGCA---GTGAATCGTTGCA
gi|22 : G-ATTGGACG--G-TT--C-TCGCCAATC-TG-AGATG-CTGTT-GAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCA--ATTGTACC-AACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--acctct
gi|26 : TTTCATTTTAACCACTTA--------CTGACACTTACTACAAGACTTC-ACCAA-ATC------------------------ACAATCAAATCAAG--AC-----------TGACATGATTTCT-C-ATATTT-----TTA---CT-------------AACCA---AAATGCTCCCTCTCt
gi|28 : -----CA------AGGAATAATCAGATCAAGTAACTGATCCAAGAGTGACATGTTTTCC-T-ATCTTTTA---TTA---CC----T
gi|3 : ATTTTAACTACTTA--------CTGAAACTTATTACAAGACTTC-ACAAA-ATCA-----TTAACCCA------AGGAATAATCAAATCAAG--AC-----------TGACATGATTTCT-T-ATCTTTT----------TC----CATC--------CA---AAATATTCCCTCTCTTTGTATTT----GGCTTCAGA---GGAACTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTCTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGATG--T-TT--TGTAGCTAATC-AG-AACCG-CAGTG-AAAAAATTGAAGGAAATGAATAGATAACTTGTACACATT-ATATTCTTTTAT-ATTGAACCAAATCGAATTTGCT----CTGAA-CG-TGAA-TTGAGATTCGATTTGC--A-CAACAGA--T-TCGCGATTTTCGGT-G--CACCGCA---GTGAATCGTTGCACC
gi|4 : TTCATGTTAGCTACTTAGGCAGTTACTGACAC-TGTTAAGAGACTCCGAGCAA-A-CA-----T-----TAAACAACAAGAA-AATC-AATCAAG--AC-----------TG-C-TGATTTCT--------------TTA---CT----TGACT----AACCA---AATTACTACCTA-CTTGGTA-TTAAT----TTAAAACAGGGATCTTT-GAGCACT-------GAT-T-TCATCATACT----C-C----T----CCAT-CTTGTT--TTTTAG----TGAACTAAAGTGG-TTG-ATTGGACG--TATT--TTTAGCCAATC-AGAAATCGTCCGTT-TAAAA-CTCAAGGAA-TGAATAGATAAC-TGTA-AAGTT-G----CGTTCAT-ATTGAAAC-AACAAAATTTGCC--------T-TGTTGAA---GAGTTTCA--TTGGAACATGACAGA--ATTTGCG--TTTCGATGG--CACCGCGCGAATGAAACGTCTCACCt
gi|6 : GACACTTATTTCATGATTTC-AGCGA-ATCAATGGCC-----CA------AAAAATAATCAAATCAAG--AC-----------TGGCATGTTTTTT-TTAACTTTTA---CTA---CC----TATGTTCAAAACCA---AAATACTCCCTCTCTTTGTATTTAAATGG-TTGGGA---GGATCTCT-GGGCACT------GGAT-T---------------C-C----T----CCAT-CTTGTTTGTTTTAA----TG-ACTAAAGT-A-TTG-ATTGAAAG--T-CT--TGTAGCCAATC-AG-AAATG-TCGTT--AAAAGTTGAAGGAAGTGAATAGATAACTTGTATACATT-ACAGTCTTTTAT-ATTGAACCGAAACAAATTTGTT----CAG-T-TG-TGGA-TCGAAAATCA-----------GACAGA--G-TCGCGGTTTTTGAC-G--CACCGCG---GTGAATCGTTGCACCtct
gi|8 : TCATTTCAAAATTGC-AGCTA--TCA-----T-----TC------TGGGACAATAAAA--AAA--AC-----------TGGCATGTTTTTT-T-TTTTCTTT---TTAAGCTT----TAT-------ACCAGCCAAATAT--CCACCCATCGGATTTAAGTG-CGGGGGG---GGGGCCAC-GAGCACTTATCTCAGATAGGTCAACGTGCT----C-T----C----CTAT-CG-GTTT--TTTAG-----G-ACTGA--T-GCTTGCATTAAACG--T-T----GTAGC-AATCTGG-GATCA----TT-GAACA--TTAAGAATCTGGATAGATAGCGTGTACACA-----ATT------T-ATT---------TGAATTGGCT-----AA-C-TG-TGAA-TCAAG-ATC-AGTCGA--C-TGACAGA--A-TGCCGGTTTTCAAT-GCACACCGCG---GGCGATTGTTTCATC
blockSeqs : GGCAGTTA G C ATTAAACAAC TA TGATCCAAGAG T AT TACAT CCGAGCTATCTTAA GCC C TGGC G CAG T TATCTC A G TCGATCT G . A G C C GT A TTC T A G TC TG G G CAA C TA G CATACAA G T T TTGGAACA CG T CG G G CA CGA
blockSeqs : GGCAGTTA . . ATTACAAAC . . A TT TA CCGAGCTATCTTA . C TGGC G . . . . G TCGATCT . . . . . . . . CT . . G T G G G CAA C TA G CATACAA . . . ATTTGGC . . TG G . . .
blockSeqs : . . . ATTAACCCA . . A T TA CCTATGTTCAA . T GGT A . . . . G TCGT . . . . . . . . TG . . T T G T G AT C C G CTGA . . . ATTTGGC . . CG G . . .
blockSeqs : . . . AATGGCCCA . . T T TA AGCTTTAT . G GGC C . . . . A CATT . . . . . . . . TT . . C C G G A AT C T G CAG . . . ATTTGGC . . CG G . . .
blockSeqs : . . ATTC . . A C TA CTTGACT . T TGG C . . . . G CCT . . . . . . . . TG . . A T G G T TT C T G CAG . . . CTTCATC . . TG G . . .
blockSeqs : . . . . . A T TT CCTTAA . C TGC A . . . . G CCT . . . . . . . . G . . T C A G C AT C T G TTA . . . ATTTGAC . . CG A . . .
blockSeqs : . . T T A TCCATC . . T G . . . . G CCT . . . . . . . . G . . A C G G T AT C T A CTG . . . ATTTGCA . . GC . . . .
blockSeqs : T T T CT . . . G . . . . . CCT . . . . . . . . C . . C C A A G AC . T G CAG . . . AGTCGAC . . C . . . .
blockSeqs : . . . . . . . . CTC . . . . . . . . C . . T T T G C G . T . AA . . . A . . . . . .
blockSeqs : . . . . . . C . . A . G . G . . . . . . . . A . . .
blockSeqs : . . . G . . T . . . T . . . . . . . . . . . .
blockSeqCons : ******** ATTAACCCA*********** CCCTATTTA********* TGGC CCT************* **** N***
originalCons : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCA-----T-----CA------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTA---CC----TATCT--AAAACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCT----C-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT--CGTAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
finalCons : TTTCATGTTAACTACTTA--------CTGACACTTATTACAAGACTTC-AGCAA-ATCATTAACCCA-----------AGGAATAATCAAATCAAG--AC-----------TGACATGNTTTCT-T-ATCTTTTA---TTACCCTATTTA---------AACCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCTCCT-------------CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TTN---TAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGAGCTGCAACGATTCACAAACTTTTCAATCACAAACTTTTCAATGCGACTCGATTGGTCGATTTTTGACATTCGGAATTTCGATTATTTTTTAATAGAAACTTTATTGATTACAACATTACTTTGCAATCCATAATCATCATTATTCAAACACTACAAATGAATATGAATTAAGGCAATATTGCAAAAATTAGTGTATAAAATTATCATAAAACTTTCTTTCTACTACAGAATTAAACTCAGACTTAGAGAAACTTCTAGAAATTAAGATAGTATGATAACAGAGATGTGGTAACCAGATTAAATACAAATCTTTATCAGATGAGGGCTCAGGGTGTTGGTATTTCAGTGATGAGTATTACCAGTCAATTAT
Unaligned ( gi|7 ): ACTTTTTGATTCGACTCGATTTCGATTTTTAACATTCGATTCGGTTATTTTCGATTTGATTATTTGAAGTAGGAACTTTATTACTTAACATTTACTTTCAGTCATAATCATCATTACTCAAACACTACAGTACAGATAATATGAATTAGGCATAATCAAAATTTTAGAGACAAAACATTAATTTGAAACAAGAATACATTCTAAACAACATTGACTGGATTAAATCATCACGTTTTTGTTAACCATCACATTAACTCAGACTTAGAGAAACTTCTAGAAATTAGATTTATGAGACCCAGTAGATTAAATACAAATCTTGAAAGATGTGATATTTCAGTGATTATGTC
Unaligned ( gi|9 ): GCAACGAGTCTCAAACTTTTCTATTTGACTCGAGTTTTGTATTTTTGATTCGATTATTTGAATAAAAACTTTATTATTCAACATTTATTTGCAGTCATAATCTTCATTACTCAAACACTACAGAAAATGTGAATTAGGCCTTATTAAATTTCAGTGACAAAAAATTAAATATAAAAACCCTTGATTGGATTAAATTATCATAAATTTCTTTAACTATCAATTTAACTCAGACTTCAAGAAACTTCTAGAAATTAGATTTATATTCATATTTTATATACAAAGGATTAGCTGAGAGGTGCGATATCCAGTTATGATCTTGCAATCAATTGTTC
Unaligned ( gi|10 ): TAGAGCTGCACGATATCCACAACTTTTTCGATTAGACCATCATCGATTTGACATATCCGATCCAGGTTATTTCATTCAATATTTAGATGAAACCTTTTAGTATTCAACACTCTCAGTCATAATCATCATAATGCAAACTAACAAATGATGAAAGCCAATTACAAATAAATCTTAGAACATCATAAAGTTCTTTTTACTACAAGATAGCTCAGACAAGAAAACGATCATATAAGAGTTGATACACAAGAAGACGGGTATCTAGATTAAAAAGAGCTATATATAGGCTCAGGTTGGCATCTCAGTGGATGAAATTTCAGTCAATTGTTC
Unaligned ( gi|14 ): AGCTGCAACGATTCACAAATTTTTTTATTCGACTCATTTTCAATTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACATTTACTTTCAGTCATAATCACCGTTACTCAAACACTACAAATGATATGAATTAGGCATTGTTACAAAAATACATTTTAAAAATTATCATAAATTTCTTTAACTATCAAATTAACATCAGACTTGGAGTAACTTCTAGAA
Unaligned ( gi|15 ): TTGAAACTTTATTATTCAACAATTACTTTCAGTCATAATTATTATTAATCAAACTACAAATGGCAGGAATCAGGCATTATTACAAAAATGCATTCTAAAATTTTCATAAATTTCTTTAACTATCAGATTAGCTCAGACTTAGAGAAACTTATTGAATTTAGTTATATGATACCAGAATCTTGAAAGATTGACTCAGGGTATGATGTTTCTGTGATGGCATTACTATGAAAATATTT
Unaligned ( gi|16 ): AGCTGCAACGATTCACAAACTTCGATTCGACTCGATTTCGATTTTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACACTTGCTTTCAGTCATAATCATCATTATTCAAACACTACAAATAATATGAATTAGGCAATATTGCAGAAAATTAATTCTAAAAATTGTCATAAATTTCTTTTACTATCAAATTAAC
Unaligned ( gi|18 ): TGCAATGATCCACAAACTGTTCGATTCGACTCGATTTCGAATTTTAACATTCGATTCGGTTATTGTCGATTCGATTATTTGAATAGGAACCTTCTTATTCAACATTTACTTTCAGTCAATAATCATCATCACTCAAACAAATATGAATTAGGCATTATCAAAAGTTCTGATTTCAGTCACGAAAAATTA
Unaligned ( gi|20 ): TTATCAAGAATTTAACATGATATGAAGAAGCATTTTTACAAAGTTAACAATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATT
Unaligned ( gi|21 ): ACGATCAAATTAACTCAGACTTAGTAGTAGGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTTCTATAGTAGATTTAAATACAAAATCTTTGAAAGATTGACTTAGAGGTGTGATATTTCCAGTGATTATATTTCCAACCAATTGTT
Unaligned ( gi|23 ): ACGATCAAATTAACTCAGACTTAATTAGAGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTCTATAGTAGATTTAAAATAAATCTTGAAAGATTGACTTAGAGTGTGATATTTCAGTGATTATATTTCCAACAATTTG
Unaligned ( gi|24 ): TTTGAACATTAGACTCCATTGTATTCAATTTGAATTTTGAAACAGTATAACTTGGTTATTCAACATTTACTTTCAACCATAATCATCGATACACATAATATAAAAGACACATTGTCTTTGAATTTAAATTTTGGAAAATT
Unaligned ( gi|25 ): ATTACAAAAGTACATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATTGGCT
Unaligned ( gi|27 ): CCAGAGACTCAGTAGATTAGATACAAATCTTGAAAGATTGACTCTGGGTGTGATATTTCAGTGATGATATTCCTGTCAATT
Unaligned ( gi|29 ): AATTTATATGGTTAACACGTTGGAATGAAACACCACTAA
Alignments
lowQualScore : 55555555 44444444444444 222222222222 11111 5555555555555 111111 222222222 11 22222222
lowQualScore : 88888888 00 5 5 11111111111111 0 3 66 444444444444 1 4 4 00000 9999999999999 4 777 7 77 555 1 777 4 111111 4 1 4 222222222 4 0 8888 4 0 3 3 3 77 3 777 3 3 11 44 33 1 1 0 999 6 77 1 00000000 3 3 3 9999999999 44 3 99 4 4 55 777
lowQualScore : ........ .. . . .............. . . .. ............ . . . ..... ............. . ... . .. ... . ... . ...... . . . ......... . . .... . . . . . .. . ... . . .. .. .. . . . ... . .. . ........ . . . .......... .. . .. . . .. ...
lowQualScore : 00000000 33 7 7 77777777777777 9 2 99 666666666666 0 0 0 66666 6666666666666 0 000 4 00 111 9 888 0 555555 0 6 0 000000000 0 8 5555 0 7 6 6 3 11 3 777 3 3 22 22 66 8 0 2 888 7 11 8 22222222 3 3 3 7777777777 66 3 88 1 0 55 888
consensus : TTTCATGTTAACTACTTAGGCAGTTACTGACACTTATTACAAGACTTC-AGCAA-ATCATTA---ACC--CAAGGAATAATCAAATCAAG--ACTGA-----------CATGNTTTCT-T-ATCTTTTA---TTACC---CTAT-TT--AAA-CCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCTC-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT-N-TAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
Reference ( family-2761 ) : TTTCATGTTAACTACTTA--------CTGACACTTATTACAAGACTTC-AGCAA-ATCATTA---ACC--CAAGGAATAATCAAATCAAG--ACTGA-----------CATGNTTTCT-T-ATCTTTTA---TTACC---CTAT-TT--AAA-CCA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTGGGA---GGATCTTT-GAGCACT------GGAT-TGTCATCATGCTC-C----T----CCAT-CTTGTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGACG--T-TT-N-TAGCCAATC-AG-AANCG-CCGTT-GAAAAGTTNAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCTTTCAT-ATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAGAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACCGCG---GTGAATCGTTGCACC
gi|1 : TTACATGTTAACCACTTG--------GTGACATTTATTACAAGATTTC-AGCAA-ATC------------CAACGAATAATCAAATCAAA--ACTGA-----------CATGTTTTCT-T-ATCTTTTA---TTACC----TAT-CT--AAAACCA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAGA---GGATCTTT-AGGTACT------GGAT-TGTCATCATGCTC-C----TATGACCAT-CTTGTTTGTTTTAGGGCCTA-AATAAAGT-G-TCG-ATCAGACG--T-TT-TGTAACCAATC-AG-AAGCG-CCGTT-AAAAAGTTTAAGGACGTGAATAGATAACTCGTACACATT-ATATTATTTTAT-ATTGAACCGAACCGAATTTCCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGA--A-TCGCGGTTTTCGAT-G--CACTGCG---GTGAATCGTTGCACC
gi|11 : GTTTTCTAT-ATCTTT-A---TAACCGAGCTAT-CTTAAAA-CCA---AAATACTCC-TCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCTT-CGATCT----CCAT-CT-GTTTGTTTTAG----TG-CCTAACAT-G-TTG-ATTGGACA--T-TT-G-TAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAGAAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAATTCGAAAATCGATTTGG--C-TGACAGACGA-TC-CGGTTTT
gi|12 : TTTCT-T-ATCTTTTA---TAACCGAGCTATCTT--AAA-CCA---AAATACTCCCTCTCTTCGTATTCAATTGGCTTGGGA---GGATCGTT-GAGCACT------GAAT-TGTCATCATGCTT-CGATCT----CCAT-CTTGTTTGTTTTAG----TG-CCTAACAT-G-TTG-ATTGGACA--T-TT-G-TAACCAATC-AG-AAGCG-TCGTT-GATAAGTTGAAGAAAGTGAATAGATAACTTGTACACATT-ATATTCTTTTATAATTGAACCGAACCGAATTTGCT----CAG-T-TG-TGAA-TCGAAAATCGATTTGG--C-TGACAGG--A-TCGCGGTTTt
gi|13 : tTTTACATTTACC---TTA------AAC-CCA---AAGTATTCCCACACTT--TAT--AATT----TAGGG---GAATCTCT-GAGATCG------GGAT-TGCTGTC-CACTT-CG---T----CCAT-TTTCCTTGTTTTAG----CA-ATTTTAGT-G-TTA-ATTGGACG--T-TTCT-TAGCCAATT-AC-AGTAG-CCGCT-GAAAATATGGAAGAAGAAAATAAATAAGTGGTACATATT-TTATTCTTTCA--A------CGAACGGAA--------------T-TG-TAAA-TCGAAAAGCGATTTGG--C-TCCAAGA--A-T--------------------CGCG---GTGAATCGTTGCACC
gi|17 : acgTT-GAGCACC------AGAT-TAGCATCATGCCCAT----T----CCAT-CTTGTTTGTTTCAG----TG-ACATTAGT-G-TTA-ATTGGAGGGTT-TT-C-TAGCCAATC-AG-AGCCA-TCGTT-GAAAAGGTAAAGGAAG----TAGATA----------------------CCAC-ATTGAAAAGAACTGAATTTGTT----TTA-T-TG-AGCA-CTGAGAATCACTTCAT--C-TGAAAGA--A-TTGCAGTTTTAGAT-G--CATTGCA---GTACATCATTGCATCt
gi|19 : -G-CTG-ATTGGACG--G-TT-C-TCGCCAATC-TG-AGATG-CTGTTTGAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCAT-ATTGTACCGAACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--CATCCCA---GTGAATCtct
gi|2 : TCATGTTAGCTACTTAGGCAGTTACTGACACTT-TTACAGGACCCC-AGCAACATCATTACAAAC-----AGGAATAATCAA-TCAAG--ACTGA-----------CATGATTT-T-T-ATCTTTTA---CTA----------------A-CCA---AT-TACTCC-TCTCTT-GTATTTAAT-GGTTTCGG-----GATCTTTTGAGCACT------GGAT-TGTCATCATGCTC-C----T----CCATGCTTGTTTGTTT-AG----TG-ACTAAAGT-G-T-G-ATTGGACGTTT-TT-C-TAGCCAAAT-AG-AAT---TCGTT-AAAAAGTTCAAGGAAGTGAATAGATAACTTGTACACATT-ATATTCATTCAT-ATTGAACCGAACCGAATTTGCT----CTG-TGTG-TGAA-T-GAGATTCGATTTGA--C-TGACAGA--A-TCGCGG-TTTCGAT-G--CACCGCA---GTGAATCGTTGCA
gi|22 : G-ATTGGACG--G-TT-C-TCGCCAATC-TG-AGATG-CTGTT-GAAAAGTTTAAGGCAGTGAATAGATAACTTGTATACTTTCAAATT-TTTCA--ATTGTACC-AACCAAATTTATTCATACAA-T-TG-TTAA-TCATGAATCGA---------TGAAAGG--A-T--CAGTTTCC-AT-G--acctct
gi|26 : TTTCATTTTAACCACTTA--------CTGACACTTACTACAAGACTTC-ACCAA-ATC------------------ACAATCAAATCAAG--ACTGA-----------CATGATTTCT-C-ATATTT-----TTACT-------------AA-CCA---AAATGCTCCCTCTCt
gi|28 : --CAAGGAATAATCAGATCAAGTAACTGATCCAAGAGTGACATGTTTTCC-T-ATCTTTTA---TTACC---
gi|3 : ATTTTAACTACTTA--------CTGAAACTTATTACAAGACTTC-ACAAA-ATCATTA---ACC--CAAGGAATAATCAAATCAAG--ACTGA-----------CATGATTTCT-T-ATCTTTT--------T---CCAT---------CCA---AAATATTCCCTCTCTTTGTAT----TTGGCTTCAGA---GGAACTTT-GAGCACT------GGAT-TGTCATCATGCTC-C----T----CCAT-CTTCTTTGTTTTAG----TG-ACTAAAGT-G-TTG-ATTGGATGT-T-TT-G-TAGCTAATC-AG-AACCG-CAGTG-AAAAAATTGAAGGAAATGAATAGATAACTTGTACACATT-ATATTCTTTTAT-ATTGAACCAAATCGAATTTGCT----CTGAA-CG-TGAA-TTGAGATTCGATTTGC--A-CAACAGA--T-TCGCGATTTTCGGT-G--CACCGCA---GTGAATCGTTGCACCt
gi|4 : TTCATGTTAGCTACTTAGGCAGTTACTGACACT-GTTAAGAGACTCCGAGCAA-A-CATTA---AACAACAAGAAA--ATCAA-TCAAG--ACTG------------C-TGATTTCT-T-------------TACT---TGAC-T----AA-CCA---AATTACTACCTA-CTTGGTATT-AATT----TAAAACAGGGATCTTT-GAGCACT------G-AT-T-TCATCATACTC-C----T----CCAT-CTTGTT--TTTTAG----TGAACTAAAGTGG-TTG-ATTGGACGTAT-TT-T-TAGCCAATC-AGAAATCGTCCGTT-TAAAA-CTCAAGGAA-TGAATAGATAAC-TGTA-AAGTT-G----CGTTCAT-ATTGAAAC-AACAAAATTTGCC--------T-TGTTGAA---GAGTTTCA--TTGGAACATGACAGA--ATTTGCG--TTTCGATGG--CACCGCGCGAATGAAACGTCTCACCt
gi|6 : GACACTTATTTCATGATTTC-AGCGA-ATCAATG---GCC--CAAAAAATAATCAAATCAAG--ACTGG-----------CATGTTTTTT-TTAACTTTTA---CTACC----TATGTTCAAAA-CCA---AAATACTCCCTCTCTTTGTATTTAAATGG-TTGGGA---GGATCTCT-GGGCACT------GGAT-T-----------C-C----T----CCAT-CTTGTTTGTTTTAA----TG-ACTAAAGT-A-TTG-ATTGAAAG--TCTT-G-TAGCCAATC-AG-AAATG-TCGTT--AAAAGTTGAAGGAAGTGAATAGATAACTTGTATACATT-ACAGTCTTTTAT-ATTGAACCGAAACAAATTTGTT----CAG-T-TG-TGGA-TCGAAAATCA-----------GACAGA--G-TCGCGGTTTTTGAC-G--CACCGCG---GTGAATCGTTGCACCtct
gi|8 : TCATTTCAAAATTGC-AGCTA--TCATT------C--T--GGGACAATAAAA--AAA--ACTGG-----------CATGTTTTTT-T-TTTTCTTT---TTAAG---CT---TT--ATA-CCAGCCAAATAT--CCACCCATCGGATTTAAGTG-CGGGGGG---GGGGCCAC-GAGCACTTATCTCAGATAGGTCAACGTGCTC-T----C----CTAT-CG-GTTT--TTTAG-----G-ACTGA--T-GCTTGCATTAAACG--T-T--G-TAGC-AATCTGG-GATCA----TT-GAACA--TTAAGAATCTGGATAGATAGCGTGTACACA-----ATT------T-ATT---------TGAATTGGCT-----AA-C-TG-TGAA-TCAAG-ATC-AGTCGA--C-TGACAGA--A-TGCCGGTTTTCAAT-GCACACCGCG---GGCGATTGTTTCATC
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGAGCTGCAACGATTCACAAACTTTTCAATCACAAACTTTTCAATGCGACTCGATTGGTCGATTTTTGACATTCGGAATTTCGATTATTTTTTAATAGAAACTTTATTGATTACAACATTACTTTGCAATCCATAATCATCATTATTCAAACACTACAAATGAATATGAATTAAGGCAATATTGCAAAAATTAGTGTATAAAATTATCATAAAACTTTCTTTCTACTACAGAATTAAACTCAGACTTAGAGAAACTTCTAGAAATTAAGATAGTATGATAACAGAGATGTGGTAACCAGATTAAATACAAATCTTTATCAGATGAGGGCTCAGGGTGTTGGTATTTCAGTGATGAGTATTACCAGTCAATTAT
Unaligned ( gi|7 ): ACTTTTTGATTCGACTCGATTTCGATTTTTAACATTCGATTCGGTTATTTTCGATTTGATTATTTGAAGTAGGAACTTTATTACTTAACATTTACTTTCAGTCATAATCATCATTACTCAAACACTACAGTACAGATAATATGAATTAGGCATAATCAAAATTTTAGAGACAAAACATTAATTTGAAACAAGAATACATTCTAAACAACATTGACTGGATTAAATCATCACGTTTTTGTTAACCATCACATTAACTCAGACTTAGAGAAACTTCTAGAAATTAGATTTATGAGACCCAGTAGATTAAATACAAATCTTGAAAGATGTGATATTTCAGTGATTATGTC
Unaligned ( gi|9 ): GCAACGAGTCTCAAACTTTTCTATTTGACTCGAGTTTTGTATTTTTGATTCGATTATTTGAATAAAAACTTTATTATTCAACATTTATTTGCAGTCATAATCTTCATTACTCAAACACTACAGAAAATGTGAATTAGGCCTTATTAAATTTCAGTGACAAAAAATTAAATATAAAAACCCTTGATTGGATTAAATTATCATAAATTTCTTTAACTATCAATTTAACTCAGACTTCAAGAAACTTCTAGAAATTAGATTTATATTCATATTTTATATACAAAGGATTAGCTGAGAGGTGCGATATCCAGTTATGATCTTGCAATCAATTGTTC
Unaligned ( gi|10 ): TAGAGCTGCACGATATCCACAACTTTTTCGATTAGACCATCATCGATTTGACATATCCGATCCAGGTTATTTCATTCAATATTTAGATGAAACCTTTTAGTATTCAACACTCTCAGTCATAATCATCATAATGCAAACTAACAAATGATGAAAGCCAATTACAAATAAATCTTAGAACATCATAAAGTTCTTTTTACTACAAGATAGCTCAGACAAGAAAACGATCATATAAGAGTTGATACACAAGAAGACGGGTATCTAGATTAAAAAGAGCTATATATAGGCTCAGGTTGGCATCTCAGTGGATGAAATTTCAGTCAATTGTTC
Unaligned ( gi|14 ): AGCTGCAACGATTCACAAATTTTTTTATTCGACTCATTTTCAATTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACATTTACTTTCAGTCATAATCACCGTTACTCAAACACTACAAATGATATGAATTAGGCATTGTTACAAAAATACATTTTAAAAATTATCATAAATTTCTTTAACTATCAAATTAACATCAGACTTGGAGTAACTTCTAGAA
Unaligned ( gi|15 ): TTGAAACTTTATTATTCAACAATTACTTTCAGTCATAATTATTATTAATCAAACTACAAATGGCAGGAATCAGGCATTATTACAAAAATGCATTCTAAAATTTTCATAAATTTCTTTAACTATCAGATTAGCTCAGACTTAGAGAAACTTATTGAATTTAGTTATATGATACCAGAATCTTGAAAGATTGACTCAGGGTATGATGTTTCTGTGATGGCATTACTATGAAAATATTT
Unaligned ( gi|16 ): AGCTGCAACGATTCACAAACTTCGATTCGACTCGATTTCGATTTTTTGACATTCGATTCGGTTATTTTCGATTCGATTATTTGAATAGAAACTTTATTATTCAACACTTGCTTTCAGTCATAATCATCATTATTCAAACACTACAAATAATATGAATTAGGCAATATTGCAGAAAATTAATTCTAAAAATTGTCATAAATTTCTTTTACTATCAAATTAAC
Unaligned ( gi|18 ): TGCAATGATCCACAAACTGTTCGATTCGACTCGATTTCGAATTTTAACATTCGATTCGGTTATTGTCGATTCGATTATTTGAATAGGAACCTTCTTATTCAACATTTACTTTCAGTCAATAATCATCATCACTCAAACAAATATGAATTAGGCATTATCAAAAGTTCTGATTTCAGTCACGAAAAATTA
Unaligned ( gi|20 ): TTATCAAGAATTTAACATGATATGAAGAAGCATTTTTACAAAGTTAACAATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATT
Unaligned ( gi|21 ): ACGATCAAATTAACTCAGACTTAGTAGTAGGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTTCTATAGTAGATTTAAATACAAAATCTTTGAAAGATTGACTTAGAGGTGTGATATTTCCAGTGATTATATTTCCAACCAATTGTT
Unaligned ( gi|23 ): ACGATCAAATTAACTCAGACTTAATTAGAGAAACTTCTAGAAATTAGATCTATGATACCAGAGATTTCTATAGTAGATTTAAAATAAATCTTGAAAGATTGACTTAGAGTGTGATATTTCAGTGATTATATTTCCAACAATTTG
Unaligned ( gi|24 ): TTTGAACATTAGACTCCATTGTATTCAATTTGAATTTTGAAACAGTATAACTTGGTTATTCAACATTTACTTTCAACCATAATCATCGATACACATAATATAAAAGACACATTGTCTTTGAATTTAAATTTTGGAAAATT
Unaligned ( gi|25 ): ATTACAAAAGTACATTTTAAAATTATCATGATTTCTTTAATTATCAAATTAACTCAACTTCGAGAAAACTTCTAAGAATTTAAGATGAACCAGAGACTCGGTAGATTAAATACAAAATCCTTGAAAGATTGGCT
Unaligned ( gi|27 ): CCAGAGACTCAGTAGATTAGATACAAATCTTGAAAGATTGACTCTGGGTGTGATATTTCAGTGATGATATTCCTGTCAATT
Unaligned ( gi|29 ): AATTTATATGGTTAACACGTTGGAATGAAACACCACTAA