lowQualScore : 1 22222 11 222222 1 22 11 222222 1 1 1111 11 33333333333 1 1 2222222222222222222222222222222222222 111111111111111111 1111111 11111111 1111111111 222222222 4444 22 1 1
lowQualScore : 7 2 8 2 2 8 0 00000 11 333333 6 77 8 22 888888 0 2 0 6 0 2 3 3333 6 2 2 0 2 7 2 2 5555 99 66666666666 0 4 9 3 6 6 3 3 6666666666666666666666666666666666666 333333333333333333 666666 555 3333333 3 3 2 2 66 8 2 33 2 5 5 2 22222222 5555 777 33 0000000000 2 2 333 8888888 2 33 55 333 2 333 4 2 33 8888 7 6 3 0 888888888 2222 55 66 7 5
lowQualScore : . . . . . . . ..... .. ...... . .. . .. ...... . . . . . . . .... . . . . . . . . .... .. ........... . . . . . . . . ..................................... .................. ...... ... ....... . . . . .. . . .. . . . . ........ .... ... .. .......... . . ... ....... . .. .. ... . ... . . .. .... . . . . ......... .... .. .. . .
lowQualScore : 3 8 8 5 2 0 8 00000 00 000000 0 00 0 55 888888 8 8 8 4 8 8 8 2222 7 9 5 8 9 9 9 0 7777 77 55555555555 8 8 2 1 8 2 3 3 1111111111111111111111111111111111111 333333333333333333 777777 444 1111111 1 1 9 9 33 0 7 77 7 3 3 7 33333333 3333 888 22 3333333333 2 2 999 7777777 2 77 33 999 2 999 4 5 99 5555 8 7 2 8 000000000 5555 55 00 0 0
consensus : TCATTTAATTTTATTTNACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GAGGTGAA-TTTTCGA-TCAC-GTACCT------GAACAACAAGTAAAGTCTAATGAACAT--TATTTTGTTGTTGTAATATAAAAT-TAAATGATAAGA-AATGAAT-CTTA-TATT----TTTT-CGGGTGATG--------T-GCAGGTTATC-ACCG-A-ATTTT-AGAC-GG-TAAAA--------CTTTTCA--T---C-A-ATG-C--GC-TTCGCGCA-----TTG-A--T-----G--A---GT---TTT-------A-CC-G-TCT-AAAA--T-T-CG--G-T-G-AT-A--------CCT----GC---AT--C----------ACCC-G-AAAA---AA------TA-TA-AG--AT---TCA-T---T-TCT-TAT--AT----CATTNCA-ACAGAAAATTAT--CATTCATCAGACTCANNTGCTGTCCACACAAAT
Reference ( gi|1 ) : TCATTTAATTTTATTTCACGTGATCACCTAACGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GAGGTGA--TTTTCGA-TCAC-GTACCT------GAACAAAAAGTAATGTCTAATGGACAT--TGTTTTGTTGTTGTAATATAAAAT-TAAATGATAAGA-AATAAAT-CTTA-TATT----TTTG-CGGGTGATA--------T-GCAGGTTATC-ACCG-AGATTTT-AGAC-GG-TAAAA--------CTTTTCA--T---C-A-ATG-C--AC-TTCGCGCA-----TTG-A--T-----G--A---GT---TTT-------A-CC-G-TCT-AAAA--T-T-CG--G-T-G-AT-A--------CCT----GC---AT--C----------ACCC-G-AAAA---AA------TA-TA-AG--AT---TCA-T---T-TCT-TAT--AT----CATTGCA-ACAGAATATTATTTCATTCATCA----TAGATGTT-CCCTCAAAAAT
gi|2 : TCATTTAATTTTATTCCACGTGACCTCCTAGCGCCGATTCTGAT-TGGTTAAAAAA-----CCTTTGA--AGA------ATT-GAGGTGA--TTTTCGA-TCAC-GTACCT------GACCAACAAGTAAAGTCTAATGGACAT--TGTTTTGTTGTTGTAATATAAAAT-TAAATGATAAGA-AATAAAT-CTTA-TATT----TTTT-CGGGTGATA--------T-GCAGGTTATC-ACCG-AGATTTT-AGAC-GG-TAAAA--------CTTTTCA--T---C-A-ATG-C--GC-TTCGCGCA-----TTG-A--T-----G--A---GT---TTT-------A-CC-G-TCT-AAAA--T-T-CG--G-T-G-AT-A--------CCT----GC---AT--C----------ACCC-G-AAAA---AA------TA-TA-AG--AT---TCA-T---T-TCT-TAT--A
gi|4 : aaataTCATT-AATTTTATTT-ACGTGATCAC-TAGCGCCGATTCTCAT-TGGTTAA--CA-----CCTTTTA--AGA------ATTTGAGGTGA--TTTTCAA-TCAC-GTACCT------GAACAACATGTAA-GTCTAATGAACGT--TATTTTTCTGTTGTAATATAAAATCTATATGATAA-----TAAAT-CTTA-T-TT----TTT--CGG-TGATA--------T-GCAG-TTATC-ACCGAAGATTTT-AGAC-GG-TAAAA--------C-TTTCA--T---C-A-ATG-C--GC-TTCGCGCA-----TTG-A--T-----G--A---GT---TTT-------A-CC-G-TCT-AAAA--T-T-CG--G-T-G-AT-A--------CCT----GC-------T----------ACCC-GAAAAA---AA------TA-T--AG--AT---TCA-----T-TCT-TAT--aa
gi|12 : taTCATTTGATTTTATTTTAAGTGATTACCTAACAGCGATTCtg
gi|9 : tggggcttgttttctggattgtggaaaataaaaaaaaaaagaataaaaatattaaTTTATTTAA-GTAGTTACCTAGCGCCGGTTCTCAT-TAGTCAAAACA-----CCTTTTA--AAA------GTT-TAGATGAATTCTCCGA-Tct
gi|3 : aagtagcaGCCGTTTCTCATATTGTTAAAGCAAGCACCCTTTTCTTAGAGCAGTTATT-AAGGTGAA-TTTTCAAATCACAGTACTTCCATTGAAACAAGCAG-AAT----AA-GAAC---------TACT-TTATAATGAAAAAT-GAAA--AAAAGAGAATAAAT-CT-A-TATT----TTTG--GGGTGATC--------TTGCAGGTTATC-ACAG-A-ATTTTGAGAC-AG-TTTAT--------TTTTTCAATT---C-A-ATGCC--GCTTTCGCGCA------TG-A--A-----G--A---TT---TTT-------ATCC-G-TTT---AA--T-T-TG--G-CAG-AC-A--------CCT----GC---AT--C----------ATCCAG-AAAAGAGAA------TG-T--AG--AT---T-A-T---T-CTT-TAT--gaactgtattaccacttaaaaatggaca
gi|13 : tCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATTGGAAGTGAT-TTTTCGA-TCAC--TACCC------GAGCAACAAGTAAAGTCTAATGAACAT--TATTTtactcttacaaaattactacccca
gi|5 : AATTAAAGTCTAATGAGCATCTTTTTTTGTCGTTGTGATATAAAAT-TAAATGATAAGA-AATGA-----CA-TATT----TTTT-CGACTGAT---------T--CAGG-TGTC-ACCG-AAAT----------------A--------CT----------------TG-A--GC-TTCGCGCA-----TTG-A--T-----G-----------TGC-------A-CA-G-TAT---AT--T-T-CG--G-T-G-AT-A--------CCT----GA---AT--C---------------------------------A-TA-AG--AG---TCA-T---T-TCC-TA
gi|16 : atcTTTTGTTGTTGTGATATAAAAT-TAAATGAaacgaattgtttcgcacatc
gi|8 : tctattaaacaaaatcctAT-TAAAGAATGATA-GATTACT-CT-A-TGCT----TTTT-TGGGTGATGCCGAATGGT-GCA---TATC-AACC-AGATTTT-AGAT-GG-TAAAA--------
gi|17 : acattccgccatgatgattAGATG-TAAGA-AATGAGT-CTTA-TATT----TTTT-CGGGTGcacacgtaggaaattatttta
gi|3 : AGTAATAAAG-AATAA-T-CT-A-CATTCTCTTTTC-TGGATGAT-----------GCAGGT-GTCTGCCA-AA---TT-AAAC-GGATAAAA--------ATCTTCA--TGCGCGA-AAG-C--G-------GCA-----TTG-AATT-----G--A---AAAAATAA-------A-CT-G-TCTCAAAA--T-T-CT--G-T-G-ATAA--------CCT----GCAAGAT--C----------ACCC---CAAA---AA------TA-T--AG--AT---TTA-T---TCTCT-Tttcca
gi|19 : tgccgtttctcatattgttaaagcaagcacccttttcttagagcagttattaaggtgaattttcaaatcacagtacttccattgaaacaagcagaataagaactactttataatgaaaaatgaaaaaATTATAAGA-AATGAAT-CTTA-TATT----TTTT-CGcttacaaaattactacccca
gi|2 : ATAAGA-AATGAAT-CTTA-TATT----TTTT-CGGGTGAT-----------GCAGGT-ATC-ACCG-A-ATTTT-AGAC-GG-TAAAA--------CT---CA--T---C-A-ATG-C--GC-GAAGCGCA-----TTG-A--T-----G--AAAAGT---TTT-------A-CC-G-TCT-AAAA--TCT-CG--G-T-G-AT-AA-------CCT----GC---ATATC----------ACCC-G-AAAA---AA------TA-TA-AG--AT---TTA-T---T-TCT---T--AT----CATTactgtat
gi|4 : aaatatcatttaattttattccacgtgacctcctagcgccgattctgattggttaaaaaacctttgaagaattgaggtgattttcgatcacgtacctgaccaacaagtaaagtctaatggacattgttttgttgttgtaatataaaattaATAAGA-A-TGAAT-CT-A-TATT----TTTTTCGGGTA-------------GCAGGT-ATC-ACCG-A-ATTTT-AGAC-GG-TAAAA--------C---TCA--T---C-A-ATG-C--GC-GAAGCGCA-----TTG-A--T-----GAAA---GT---TTT-------A-CC-G-TCT-AAAATCT-T-CG--G-T-G-AT-A--------ACT----GCAT-AT--C----------A-CC-G-AAAA---A--------A-TA-AG--AT---TTA-T---TATCA-TATAGATTTTATATTACA-ACAGAAAA--ATAACGTTCATTAGACTTACATGTT-aaa
gi|18 : tatcattaattttatttacgtgatcactagcgccgattctcattggttaacaccttttaagaatttgaggtgattttcaatcacgtacctgaacATACGA-AATGAAT-CTTA-TTTT----TTTT-CGGGTGATtg
gi|6 : gcAGA-AATGAAT-TTAA-T-TT----TTTATCGGGTGATG--------TAGC-GATC--C-ACCG-AAAATTT-GGAC----TGAAAGCACGGTCCTTCTAA--A---C-A-A-----------------------------------A--A---GT---TTT---------CT-A-TAC-AAAT--TGT-CG--A-T-GGAT-A--------CCT----GC---AT--C----------ACCC-G-GGGA---AA------CA--A-AA--AT---TCA-T---T-atc
gi|15 : gA-AATGAATACTTAATATT----TTTT-GGGGTG--A--------T-GCAG--TATCTACTG-A-ATTTT-AGAaaataccttccaatagaa
gi|6 : aatgaacattatt-AATGAAT-TTT--TGTT----TCCC-CGGGTGAT-----------GCAGGT-ATCCATCG-ACAATTT-GTAT-AG--AAAA--------CTTTTGT--T---T-AGAAG-G--AC---CGTGC---------------------------T---TTC-------A----G-TCC-AAAT--T-TTCG--G-T-GGAT-C--------GCT----AC---AT--C----------ACCC-G-ATAA---AA------AA-TT-AA--AT---TCA-T---T-TCTAAAT--AC----C-TTCCA-ATAGAAataacaaaagaag
gi|11 : gTT----TTTT-CGGCTGATG------------AGGT-ATT-ACCG-ACATTTTTAGACCGG-TAAAA--------C---TCAGGT---C-A-ATG-CGAGC-CTCGCATAGTGGTTTG-A--T-----G--
gi|7 : tgatataatactctatgatttGGTGCTA----------ACAGGT-ATC-ACCG-A-ATTTT-AGAC-GG-
gi|7 : gcatgtcgcgcaaattgtattcccagagtttttcgtgaaacG-C--AT-GTCGCGCAAA---TTGTA--TTCCCAG--A---GT---TTTTCGTGAAA-CCCG-TCT-AAAA--T-T-CG--G-T-G-AT-A--------CCTGTTAGC---AC--CTTAGTAGATGGCCT-G-AAAA---AAAAATAGTA-TA-GA--GC---TCATT---T-TCT-TAT--Attagtagatggcctgaaaaaaaaatagtatagagctcattttcttata
gi|8 : -C--AT-TCCGC-CA-----T-G-A--T-----G--A---TT---TTTT------A-CC-A-TCT-AAAA--T-C-TG--GTT-G-AT-ATGCACCATTCG----GC---AT--C----------ACCC-A-AAAA---AG------CA-TAGAGTAATCTATCA-T---T-CTT-TA---AT----CA---CACGTAGGAAATTATTTTA
gi|11 : aCGCA-----TTG-ACCT-----G--A---GT---TTT-------A-CC-GGTCT-AAAAA-TGT-CG--G-T-A-AT-A--------CCT-----C---AT--C----------AGCC-G-AAAA---AA----------A-AA-------TCA-TAGAG-TAT-TAT--AT----CA
gi|10 : ---GT---TTT-------C-CA-T-TCT-AATT--T-T-CGAAG---G-AT-A--------CCT----GC---AC--C----------ACCC-A-A-----------------TA-AG--AT---CCA-T---T-TCT-TAA--AT----CATTACA-AC----TGTTA----ATTCATCA----CAGCTACTGTCCACACAAATagcctcgcatagtggtttgatg
gi|15 : -TCT-AAAA--T-T-CA--G-TAG-AT-A--------C-T----GC---AT--C----------ACCC-C-AAAA---AA------TATTA-AGT-AT---TCA-T---T-Tatt
gi|5 : aatgaacattatt--T-T-CG--G-T-G-AC-A--------CCT----GA---AT--C----------AGTC-G-AAAA---AA------TA-TG----------TCA-T---T-TCT---T--AT----CATTataacaaaagaag
gi|18 : atcaattaaagtctaatgagcatctttttttgtcgttgtgatataaaatta----GC---AT--C----------ACCC-G-AAAA---AA------AA-TA-AG--AT---TCA-T---T-TCG-TAT--AT----Catacttgagcttcgcgcattgatgtgcacagtatatttcggtgatacctgaatcataagagtcatttcctaaacgaattgtttcgcacatc
gi|17 : --C----------ACCC-G-AAAA---AA------TA-TA-AG--AC---TCA-T---T-TCT-TAC--AT----CTTTCCA-
gi|19 : C-G-AAAA---AA------TA-TA-AG--AT---TCA-T---T-TCT-TAT--AA----TACTGTA-
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TCAAGCACTTAAATTGGCCTGATGGATTAATTTTGTCTTATATGACATAAAAGTGATAAGAAATGCAATCTTATATTTTGTC
Alignments
lowQualScore : 11111 111111 1 1 22222 1111 2222 3333 11 1111 11111 11111111 1111111 11111111 1111111111 1111111 2222 8888
lowQualScore : 3 8 5 6 66666 99 999999 3 9 6 6 8 00000 1111 3 77 5 2 5 5 5 5 0 0 4 2222 5 5 4444 5 5 1 1 1 55 5 0000 5 55555 4 11111111 7777777 4 4 3 3 3 3 55 777 3 33333333 7777 3333333333 2 555 4444444 2 5 66 555 55555 3 33 3 6 6 3 3 3333 5555 22 6
lowQualScore : . . . . ..... .. ...... . . . . . ..... .... . .. . . . . . . . . . .... . . .... . . . . . .. . .... . ..... . ........ ....... . . . . . . .. ... . ........ .... .......... . ... ....... . . .. ... ..... . .. . . . . . .... .... .. .
lowQualScore : 2 8 0 7 77777 22 222222 3 8 7 7 0 00000 7777 6 99 0 3 7 7 7 7 1 1 3 6666 0 7 4444 7 7 4 4 4 77 7 7777 0 55555 0 55555555 0000000 0 0 6 6 6 6 00 777 6 22222222 1111 5555555555 9 000 4444444 9 7 88 000 99999 1 44 3 7 0 8 5 6666 0000 00 0
consensus : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GAGGTGA-TT-TTCGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCGA-A--TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCA----CAGCTACTGTCCACACAAAT
Reference ( family-2701 ) : TCATTTAATTTTATTTNACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GAGGTGAATT-TTCGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGAACAT--TA-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATGT-GCAGGTTATC-ACCGA-A--TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTNCA-ACAGAAAATTA--TCATTCATCAGACTCANNTGCTGTCCACACAAAT
gi|1 : TCATTTAATTTTATTTCACGTGATCACCTAACGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GAGGTGA-TT-TTCGA-TCAC-GTACCT-----GAACAAAAAGTAAT---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTGCGGGTGATAT-GCAGGTTATC-ACCGAGA--TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--AC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTGCA-ACAGAATATTATTTCATTCATCA
gi|10 : GTTTT-------C-CA-T-TCTAATT-T-T-CGAAG---G-ATA--------CCT----GCACC----------ACCC-AA-----------------TA-AG--AT---CCA-T---TTCT-TAAATCATTACA-ACTG----TTA----ATTCATCA----CAGCTACTGTCCACACAAATtagatgttccctcaaaaat
gi|11 : CGCA-----TTG-ACCT-----GAGTTTT-------A-CC-GGTCTAAAAATGT-CG--G-T-A-ATA--------CCT-----CATC----------AGCC-GAAAA---AA----------A-AA-------TCA-TAGAGTAT-TATATCAatt
gi|11 : TTTTTTCGGCTGATG----AGG-TATT-ACCGACAT-TTTT-AGACCGGTAAAAC---TCAGGTCA-ATG-CGAGC-CTCGCATAGTGGTTTG-A--T-----Gagcctcgcatagtggtttgatg
gi|12 : tgatataatactctatgatttTCATTTGATTTTATTTTAAGTGATTACCTAACAGCGATTC
gi|13 : tggggcttgttttctggattgtggaaaataaaaaaaaaaagaataaaaatattaaCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATTGGAAGTGATTT-TTCGA-TCAC--TACCC-----GAGCAACAAGTAAA---GTCTAATGAACAT--TA-TTTct
gi|14 : TAAATTGGCCTGATGGA--T--TAATTTTGTCTTATATGACATAAAA-----GTGATAAGA-AATGCAATCTTATATTTTGTC
gi|15 : tcaagcact-TCTAAAA-T-T-CA--G-TAG-ATA--------C-T----GCATC----------ACCC-CAAAA---AA------TATTA-AGT-AT---TCA-T---TT
gi|16 : aatgaacattatt-TTTTGTTGT-TGTGATATAAAAT-TAAATGAataacaaaagaag
gi|17 : tctattaaacaaaatcctC----------ACCC-GAAAA---AA------TA-TA-AG--AC---TCA-T---TTCT-TACATCTTTCCA-
gi|18 : ----GCATC----------ACCC-GAAAA---AA------AA-TA-AG--AT---TCA-T---TTCG-TATATC
gi|19 : C-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATA
gi|2 : TCATTTAATTTTATTCCACGTGACCTCCTAGCGCCGATTCTGAT-TGGTTAAAAAA-----CCTTTGA--AGA------ATT-GAGGTGA-TT-TTCGA-TCAC-GTACCT-----GACCAACAAGTAAA---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCGAGA--TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATAatactgtat
gi|3 : aaataGCCGTTTCTCATATTGTTAAAGCAAGCACCCTTTTCTTAGAGCAGTTATT-AAGGTGAATT-TTCAAATCACAGTACTTCCATTGAA--ACAAGCAGA---AT--AA-GAAC----TA-CTTTAT-------AATGAAAAAT-GAAA--AAAAGAGAATA-AATCT-ATATTTTTG-GGGTGATCTTGCAGGTTATC-ACAGA-A--TTTTGAGA-CAGTTTATTTTTTCAATTCA-ATGCC--GCTTTCGCGCA------TG-A--A-----GATTTTT-------ATCC-G-TTT--AA-T-T-TG--G-CAG-ACA--------CCT----GCATC----------ATCCAGAAAAGAGAA------TG-T--AG--AT---T-A-----TTCT-T-TATTACTCTT-AC--AAAATTA--aa
gi|4 : tTCATT-AATTTTATTT-ACGTGATCAC-TAGCGCCGATTCTCAT-TGGTTAA--CA-----CCTTTTA--AGA------ATTTGAGGTGA-TT-TTCAA-TCAC-GTACCT-----GAACAACATGTAA----GTCTAATGAACGT--TA-TTTTTCTGT-TGTAATATAAAATCTATATGATAA-----TA-AATCTTAT--TTTTTCGG-TGATAT-GCAG-TTATC-ACCGA-AGATTTT-AGA-CGGTAAAACTTT-CA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GC--T----------ACCC-GAAAA---AA-------A-TATAG--AT---TCA-----TTCT-TATctacccca
gi|5 : taCAATTAAA---GTCTAATGAGCATCTTT-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-A----CATATTTTTTCGACTGAT-T--CAGG-TGTC-ACCGA-----------------AATACT------------TG-A--GC-TTCGCGCA-----TTG-A--T-----G---TGC-------A-CA-G-TAT--AT-T-T-CG--G-T-G-ATA--------CCT----GAATC--------------------------------A-TA-AG--AG---TCA-T---TTCC-TAtg
gi|6 : at-AATG-AATTTT-TGTTTCCCCGGGTGATG---CAGGT-ATCCATCGACA--ATTT-GTA-TAG-AAAACTTTTGT--TTAGAAG-G--AC---CGTGC----------------------TTTC-------A----G-TCCAAAT-T-TTCG--G-T-GGATC--------GCT----ACATC----------ACCC-GATAA---AA------AA-TT-AA--AT---TCA-T---TTCTAAATACC-TTCCA-ATAGAAaacgaattgtttcgcacatc
gi|7 : gTCGCGCAAA---TTGTA--TTCCCAGAGTTTTTCGTGAAA-CCCG-TCTAAAA-T-T-CG--G-T-G-ATA--------CCTGTTAGCACCTTAGTAGATGGCCT-GAAAA---AAAAATAGTA-TA-GA--GC---TCATT---TTCT-TATA
gi|8 : gcatg-TCCGC-CA-----T-G-A--T-----GATTTTTT------A-CC-A-TCTAAAA-T-C-TG--GTT-G-ATATGCACCATTCG----GCATC----------ACCC-AAAAA---AG------CA-TAGAGTAATCTATCA-T---TCTT-TA-ATCA---CACGTAGGAAATTA--T
gi|9 : acatTTTATTTAA-GTAGTTACCTAGCGCCGGTTCTCAT-TAGTCAAAACA-----CCTTTTA--AAA------GTT-TAGATGAATTCTCCGA-Tttta
Alignments
lowQualScore : 11111 111111 111 11 22222 1111 1111 3333 11 1111 11111 11111111 1111111 11111111 1111111111 1111111 2222 1
lowQualScore : 3 8 5 6 66666 99 999999 000 55 6 6 8 00000 1111 3 77 5 6 5 5 5 5 0 0 4 8888 5 5 4444 5 5 1 66 55 5 0000 5 55555 4 11111111 7777777 4 4 3 3 3 3 55 777 3 33333333 7777 3333333333 2 555 4444444 2 5 66 555 55555 3 33 2 6 6 3 3 3333 2 5 4 2
lowQualScore : . . . . ..... .. ...... ... .. . . . ..... .... . .. . . . . . . . . . .... . . .... . . . .. .. . .... . ..... . ........ ....... . . . . . . .. ... . ........ .... .......... . ... ....... . . .. ... ..... . .. . . . . . .... . . . .
lowQualScore : 2 2 0 7 77777 22 222222 222 88 7 7 0 00000 7777 6 99 0 3 7 7 7 7 1 1 3 4444 0 7 4444 7 7 4 44 77 7 7777 0 55555 0 55555555 0000000 0 0 6 6 6 6 00 777 6 22222222 1111 5555555555 9 000 4444444 9 7 88 000 99999 1 44 5 7 0 8 5 6666 5 0 0 5
consensus : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCGAN-A-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
Reference ( family-2701 ) : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCGA--A-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGCTACTGTCCACACAAAT
gi|1 : TCATTTAATTTTATTTCACGTGATCACCTAACGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAAAAAGTAAT---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTGCGGGTGATAT-GCAGGTTATC-ACCGAG-A-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--AC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTGCA-ACAGAATATTATTTCATTCATCATAGATGTT-CCCTCAAAAAT
gi|10 : GTTTT-------C-CA-T-TCTAATT-T-T-CGAAG---G-ATA--------CCT----GCACC----------ACCC-AA-----------------TA-AG--AT---CCA-T---TTCT-TAAATCATTACA-ACTG----TTA----ATTCATCACAGCTACTGTCCACACAAAT
gi|11 : CGCA-----TTG-ACCT-----GAGTTTT-------A-CC-GGTCTAAAAATGT-CG--G-T-A-ATA--------CCT-----CATC----------AGCC-GAAAA---AA----------A-AA-------TCA-TAGAGTAT-TATATCAatt
gi|11 : TTTTTTCGGCTGATG----AGG-TATT-ACCGAC-ATTTTT-AGACCGGTAAAAC---TCAGGTCA-ATG-CGAGC-CTCGCATAGTGGTTTG-A--T-----Gagcctcgcatagtggtttgatg
gi|12 : tgatataatactctatgatttTCATTTGATTTTATTTTAAGTGATTACCTAACAGCGATTC
gi|13 : tggggcttgttttctggattgtggaaaataaaaaaaaaaagaataaaaatattaaCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GGAAGTGA--TTTTTCGA-TCAC--TACCC-----GAGCAACAAGTAAA---GTCTAATGAACAT--TA-TTTct
gi|14 : TAAATTGGCCTGATGGA--T--TAATTTTGTCTTATATGACATAAAA-----GTGATAAGA-AATGCAATCTTATATTTTGTC
gi|15 : tcaagcact-TCTAAAA-T-T-CA--G-TAG-ATA--------C-T----GCATC----------ACCC-CAAAA---AA------TATTA-AGT-AT---TCA-T---TT
gi|16 : aatgaacattatt-TTTTGTTGT-TGTGATATAAAAT-TAAATGAataacaaaagaag
gi|17 : tctattaaacaaaatcctC----------ACCC-GAAAA---AA------TA-TA-AG--AC---TCA-T---TTCT-TACATCTTTCCA-
gi|18 : ----GCATC----------ACCC-GAAAA---AA------AA-TA-AG--AT---TCA-T---TTCG-TATATC
gi|19 : C-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATA
gi|2 : TCATTTAATTTTATTCCACGTGACCTCCTAGCGCCGATTCTGAT-TGGTTAAAAAA-----CCTTTGA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GACCAACAAGTAAA---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCGAG-A-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATAatactgtat
gi|3 : aaataGCCGTTTCTCATATTGTTAAAGCAAGCACCCTTTTCTTAGAGCAGTTATT-A-AGGTGAA-TTTT-CAAATCACAGTACTTCCATTGAA--ACAAGCAGA---AT--AA-GAAC----TA-CTTTAT-------AATGAAAAAT-GAAA--AAAAGAGAATA-AATCT-ATATTTTTG-GGGTGATCTTGCAGGTTATC-ACAGA--A-TTTTGAGA-CAGTTTATTTTTTCAATTCA-ATGCC--GCTTTCGCGCA------TG-A--A-----GATTTTT-------ATCC-G-TTT--AA-T-T-TG--G-CAG-ACA--------CCT----GCATC----------ATCCAGAAAAGAGAA------TG-T--AG--AT---T-A-----TTCT-T-TATTACTCTT-AC--AAAATTA--aa
gi|4 : tTCATT-AATTTTATTT-ACGTGATCAC-TAGCGCCGATTCTCAT-TGGTTAA--CA-----CCTTTTA--AGA------ATTTG-AGGTGA--TTTT-CAA-TCAC-GTACCT-----GAACAACATGTAA----GTCTAATGAACGT--TA-TTTTTCTGT-TGTAATATAAAATCTATATGATAA-----TA-AATCTTAT--TTTTTCGG-TGATAT-GCA-GTTATC-ACCGAAGA-TTTT-AGA-CGGTAAAAC-TTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GC--T----------ACCC-GAAAA---AA-------A-TATAG--AT---TCA-----TTCT-TATctacccca
gi|5 : taCAATTAAA---GTCTAATGAGCATCTTT-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-A----CATATTTTTTCGACTGAT-T--CAGG-TGTC-ACCGA-----------------AATACT------------TG-A--GC-TTCGCGCA-----TTG-A--T-----G---TGC-------A-CA-G-TAT--AT-T-T-CG--G-T-G-ATA--------CCT----GAATC--------------------------------A-TA-AG--AG---TCA-T---TTCC-TAtg
gi|6 : at-AATG-AATTTT-TGTTTCCCCGGGTGAT---GCAGGT-ATCCATCGAC-A-ATTT-GTA-TAG-AAAACTTTTGT--TTAGAAG-G--AC---CGTGC----------------------TTTC-------A----G-TCCAAAT-T-TTCG--G-T-GGATC--------GCT----ACATC----------ACCC-GATAA---AA------AA-TT-AA--AT---TCA-T---TTCTAAATACC-TTCCA-ATAGAAaacgaattgtttcgcacatc
gi|7 : gTCGCGCAAA---TTGTA--TTCCCAGAGTTTTTCGTGAAA-CCCG-TCTAAAA-T-T-CG--G-T-G-ATA--------CCTGTTAGCACCTTAGTAGATGGCCT-GAAAA---AAAAATAGTA-TA-GA--GC---TCATT---TTCT-TATA
gi|8 : gcatg-TCCGC-CA-----T-G-A--T-----GATTTTTT------A-CC-A-TCTAAAA-T-C-TG--GTT-G-ATATGCACCATTCG----GCATC----------ACCC-AAAAA---AG------CA-TAGAGTAATCTATCA-T---TCTT-TA-ATCA---CACGTAGGAAATTA--T
gi|9 : acatTTTATTTAA-GTAGTTACCTAGCGCCGGTTCTCAT-TAGTCAAAACA-----CCTTTTA--AAA------GTT-T-AGATGAATTCTC-CGA-Tttta
Alignments
lowQualScore : 11111 111111 111 11 22222 1111 1111 11 1111 11111 11111111 1111111 11111111 1111111111 1111111 2222 1
lowQualScore : 3 8 5 6 66666 99 999999 000 55 6 6 8 00000 1111 3 77 5 6 5 5 5 5 0 0 4 8888 5 5 5 6 5 5 5 1 66 55 5 0000 5 55555 4 11111111 7777777 4 4 3 3 3 3 55 777 3 33333333 7777 3333333333 2 555 4444444 2 5 66 555 55555 3 33 2 6 6 3 3 3333 1 5 1 1
lowQualScore : . . . . ..... .. ...... ... .. . . . ..... .... . .. . . . . . . . . . .... . . . . . . . . .. .. . .... . ..... . ........ ....... . . . . . . .. ... . ........ .... .......... . ... ....... . . .. ... ..... . .. . . . . . .... . . . .
lowQualScore : 2 2 0 7 77777 22 222222 222 88 7 7 0 00000 7777 6 99 0 3 7 7 7 7 1 1 3 4444 0 7 7 6 7 7 7 4 44 77 7 7777 0 55555 0 55555555 0000000 0 0 6 6 6 6 00 777 6 22222222 1111 5555555555 9 000 4444444 9 7 88 000 99999 1 44 5 7 0 8 5 6666 0 0 0 0
consensus : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
Reference ( family-2701 ) : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-ANA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
gi|1 : TCATTTAATTTTATTTCACGTGATCACCTAACGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAAAAAGTAAT---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTGCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--AC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTGCA-ACAGAATATTATTTCATTCATCATAGATGTT-CCCTCAAAAAT
gi|10 : GTTTT-------C-CA-T-TCTAATT-T-T-CGAAG---G-ATA--------CCT----GCACC----------ACCC-AA-----------------TA-AG--AT---CCA-T---TTCT-TAAATCATTACA-ACTG----TTA----ATTCATCACAGCTACTGTCCACACAAAT
gi|11 : CGCA-----TTG-ACCT-----GAGTTTT-------A-CC-GGTCTAAAAATGT-CG--G-T-A-ATA--------CCT-----CATC----------AGCC-GAAAA---AA----------A-AA-------TCA-TAGAGTAT-TATATCAatt
gi|11 : TTTTTTCGGCTGATG----AGG-TATT-ACCG-ACATTTTT-AGACCGGTAAAAC---TCAGGTCA-ATG-CGAGC-CTCGCATAGTGGTTTG-A--T-----Gagcctcgcatagtggtttgatg
gi|12 : tgatataatactctatgatttTCATTTGATTTTATTTTAAGTGATTACCTAACAGCGATTC
gi|13 : tggggcttgttttctggattgtggaaaataaaaaaaaaaagaataaaaatattaaCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GGAAGTGA--TTTTTCGA-TCAC--TACCC-----GAGCAACAAGTAAA---GTCTAATGAACAT--TA-TTTct
gi|14 : TAAATTGGCCTGATGGA--T--TAATTTTGTCTTATATGACATAAAA-----GTGATAAGA-AATGCAATCTTATATTTTGTC
gi|15 : tcaagcact-TCTAAAA-T-T-CA--G-TAG-ATA--------C-T----GCATC----------ACCC-CAAAA---AA------TATTA-AGT-AT---TCA-T---TT
gi|16 : aatgaacattatt-TTTTGTTGT-TGTGATATAAAAT-TAAATGAataacaaaagaag
gi|17 : tctattaaacaaaatcctC----------ACCC-GAAAA---AA------TA-TA-AG--AC---TCA-T---TTCT-TACATCTTTCCA-
gi|18 : ----GCATC----------ACCC-GAAAA---AA------AA-TA-AG--AT---TCA-T---TTCG-TATATC
gi|19 : C-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATA
gi|2 : TCATTTAATTTTATTCCACGTGACCTCCTAGCGCCGATTCTGAT-TGGTTAAAAAA-----CCTTTGA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GACCAACAAGTAAA---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATAatactgtat
gi|3 : aaataGCCGTTTCTCATATTGTTAAAGCAAGCACCCTTTTCTTAGAGCAGTTATT-A-AGGTGAA-TTTT-CAAATCACAGTACTTCCATTGAA--ACAAGCAGA---AT--AA-GAAC----TA-CTTTAT-------AATGAAAAAT-GAAA--AAAAGAGAATA-AATCT-ATATTTTTG-GGGTGATCTTGCAGGTTATC-ACAG-A-A-TTTTGAGA-CAGTTTATTTTTTCAATTCA-ATGCC--GCTTTCGCGCA------TG-A--A-----GATTTTT-------ATCC-G-TTT--AA-T-T-TG--G-CAG-ACA--------CCT----GCATC----------ATCCAGAAAAGAGAA------TG-T--AG--AT---T-A-----TTCT-T-TATTACTCTT-AC--AAAATTA--aa
gi|4 : tTCATT-AATTTTATTT-ACGTGATCAC-TAGCGCCGATTCTCAT-TGGTTAA--CA-----CCTTTTA--AGA------ATTTG-AGGTGA--TTTT-CAA-TCAC-GTACCT-----GAACAACATGTAA----GTCTAATGAACGT--TA-TTTTTCTGT-TGTAATATAAAATCTATATGATAA-----TA-AATCTTAT--TTTTTCGG-TGATAT-GCAG-TTATC-ACCGAAGA-TTTT-AGA-CGGTAAAAC-TTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GC--T----------ACCC-GAAAA---AA-------A-TATAG--AT---TCA-----TTCT-TATctacccca
gi|5 : taCAATTAAA---GTCTAATGAGCATCTTT-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-A----CATATTTTTTCGACTGAT-T--CAGG-TGTC-ACCG-AAA-T---------------ACT------------TG-A--GC-TTCGCGCA-----TTG-A--T-----G---TGC-------A-CA-G-TAT--AT-T-T-CG--G-T-G-ATA--------CCT----GAATC--------------------------------A-TA-AG--AG---TCA-T---TTCC-TAtg
gi|6 : at-AATG-AATTTT-TGTTTCCCCGGGTGAT---GCAGGT-ATCCATCG-ACA-ATTT-GTA-TAG-AAAACTTTTGT--TTAGAAG-G--AC---CGTGC----------------------TTTC-------A----G-TCCAAAT-T-TTCG--G-T-GGATC--------GCT----ACATC----------ACCC-GATAA---AA------AA-TT-AA--AT---TCA-T---TTCTAAATACC-TTCCA-ATAGAAaacgaattgtttcgcacatc
gi|7 : gTCGCGCAAA---TTGTA--TTCCCAGAGTTTTTCGTGAAA-CCCG-TCTAAAA-T-T-CG--G-T-G-ATA--------CCTGTTAGCACCTTAGTAGATGGCCT-GAAAA---AAAAATAGTA-TA-GA--GC---TCATT---TTCT-TATA
gi|8 : gcatg-TCCGC-CA-----T-G-A--T-----GATTTTTT------A-CC-A-TCTAAAA-T-C-TG--GTT-G-ATATGCACCATTCG----GCATC----------ACCC-AAAAA---AG------CA-TAGAGTAATCTATCA-T---TCTT-TA-ATCA---CACGTAGGAAATTA--T
gi|9 : acatTTTATTTAA-GTAGTTACCTAGCGCCGGTTCTCAT-TAGTCAAAACA-----CCTTTTA--AAA------GTT-T-AGATGAATTCTC-CGA-Tttta
Alignments
lowQualScore : 11111 111111 111 11 22222 1111 1111 11 1111 11111 11111111 1111111 11111111 1111111111 1111111 2222 1
lowQualScore : 3 8 5 6 66666 99 999999 000 55 6 6 8 00000 1111 3 77 5 6 5 5 5 5 0 0 4 8888 5 5 5 6 5 5 5 1 66 55 5 0000 5 55555 4 11111111 7777777 4 4 3 3 3 3 55 777 3 33333333 7777 3333333333 2 555 4444444 2 5 66 555 55555 3 33 2 6 6 3 3 3333 1 5 1 1
lowQualScore : . . . . ..... .. ...... ... .. . . . ..... .... . .. . . . . . . . . . .... . . . . . . . . .. .. . .... . ..... . ........ ....... . . . . . . .. ... . ........ .... .......... . ... ....... . . .. ... ..... . .. . . . . . .... . . . .
lowQualScore : 2 2 0 7 77777 22 222222 222 88 7 7 0 00000 7777 6 99 0 3 7 7 7 7 1 1 3 4444 0 7 7 6 7 7 7 4 44 77 7 7777 0 55555 0 55555555 0000000 0 0 6 6 6 6 00 777 6 22222222 1111 5555555555 9 000 4444444 9 7 88 000 99999 1 44 5 7 0 8 5 6666 0 0 0 0
consensus : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
Reference ( family-2701 ) : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
gi|1 : TCATTTAATTTTATTTCACGTGATCACCTAACGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAAAAAGTAAT---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTGCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--AC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTGCA-ACAGAATATTATTTCATTCATCATAGATGTT-CCCTCAAAAAT
gi|10 : GTTTT-------C-CA-T-TCTAATT-T-T-CGAAG---G-ATA--------CCT----GCACC----------ACCC-AA-----------------TA-AG--AT---CCA-T---TTCT-TAAATCATTACA-ACTG----TTA----ATTCATCACAGCTACTGTCCACACAAAT
gi|11 : CGCA-----TTG-ACCT-----GAGTTTT-------A-CC-GGTCTAAAAATGT-CG--G-T-A-ATA--------CCT-----CATC----------AGCC-GAAAA---AA----------A-AA-------TCA-TAGAGTAT-TATATCAatt
gi|11 : TTTTTTCGGCTGATG----AGG-TATT-ACCG-ACATTTTT-AGACCGGTAAAAC---TCAGGTCA-ATG-CGAGC-CTCGCATAGTGGTTTG-A--T-----Gagcctcgcatagtggtttgatg
gi|12 : tgatataatactctatgatttTCATTTGATTTTATTTTAAGTGATTACCTAACAGCGATTC
gi|13 : tggggcttgttttctggattgtggaaaataaaaaaaaaaagaataaaaatattaaCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GGAAGTGA--TTTTTCGA-TCAC--TACCC-----GAGCAACAAGTAAA---GTCTAATGAACAT--TA-TTTct
gi|14 : TAAATTGGCCTGATGGA--T--TAATTTTGTCTTATATGACATAAAA-----GTGATAAGA-AATGCAATCTTATATTTTGTC
gi|15 : tcaagcact-TCTAAAA-T-T-CA--G-TAG-ATA--------C-T----GCATC----------ACCC-CAAAA---AA------TATTA-AGT-AT---TCA-T---TT
gi|16 : aatgaacattatt-TTTTGTTGT-TGTGATATAAAAT-TAAATGAataacaaaagaag
gi|17 : tctattaaacaaaatcctC----------ACCC-GAAAA---AA------TA-TA-AG--AC---TCA-T---TTCT-TACATCTTTCCA-
gi|18 : ----GCATC----------ACCC-GAAAA---AA------AA-TA-AG--AT---TCA-T---TTCG-TATATC
gi|19 : C-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATA
gi|2 : TCATTTAATTTTATTCCACGTGACCTCCTAGCGCCGATTCTGAT-TGGTTAAAAAA-----CCTTTGA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GACCAACAAGTAAA---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATAatactgtat
gi|3 : aaataGCCGTTTCTCATATTGTTAAAGCAAGCACCCTTTTCTTAGAGCAGTTATT-A-AGGTGAA-TTTT-CAAATCACAGTACTTCCATTGAA--ACAAGCAGA---AT--AA-GAAC----TA-CTTTAT-------AATGAAAAAT-GAAA--AAAAGAGAATA-AATCT-ATATTTTTG-GGGTGATCTTGCAGGTTATC-ACAG-A-A-TTTTGAGA-CAGTTTATTTTTTCAATTCA-ATGCC--GCTTTCGCGCA------TG-A--A-----GATTTTT-------ATCC-G-TTT--AA-T-T-TG--G-CAG-ACA--------CCT----GCATC----------ATCCAGAAAAGAGAA------TG-T--AG--AT---T-A-----TTCT-T-TATTACTCTT-AC--AAAATTA--aa
gi|4 : tTCATT-AATTTTATTT-ACGTGATCAC-TAGCGCCGATTCTCAT-TGGTTAA--CA-----CCTTTTA--AGA------ATTTG-AGGTGA--TTTT-CAA-TCAC-GTACCT-----GAACAACATGTAA----GTCTAATGAACGT--TA-TTTTTCTGT-TGTAATATAAAATCTATATGATAA-----TA-AATCTTAT--TTTTTCGG-TGATAT-GCAG-TTATC-ACCGAAGA-TTTT-AGA-CGGTAAAAC-TTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GC--T----------ACCC-GAAAA---AA-------A-TATAG--AT---TCA-----TTCT-TATctacccca
gi|5 : taCAATTAAA---GTCTAATGAGCATCTTT-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-A----CATATTTTTTCGACTGAT-T--CAGG-TGTC-ACCG-AAA-T---------------ACT------------TG-A--GC-TTCGCGCA-----TTG-A--T-----G---TGC-------A-CA-G-TAT--AT-T-T-CG--G-T-G-ATA--------CCT----GAATC--------------------------------A-TA-AG--AG---TCA-T---TTCC-TAtg
gi|6 : at-AATG-AATTTT-TGTTTCCCCGGGTGAT---GCAGGT-ATCCATCG-ACA-ATTT-GTA-TAG-AAAACTTTTGT--TTAGAAG-G--AC---CGTGC----------------------TTTC-------A----G-TCCAAAT-T-TTCG--G-T-GGATC--------GCT----ACATC----------ACCC-GATAA---AA------AA-TT-AA--AT---TCA-T---TTCTAAATACC-TTCCA-ATAGAAaacgaattgtttcgcacatc
gi|7 : gTCGCGCAAA---TTGTA--TTCCCAGAGTTTTTCGTGAAA-CCCG-TCTAAAA-T-T-CG--G-T-G-ATA--------CCTGTTAGCACCTTAGTAGATGGCCT-GAAAA---AAAAATAGTA-TA-GA--GC---TCATT---TTCT-TATA
gi|8 : gcatg-TCCGC-CA-----T-G-A--T-----GATTTTTT------A-CC-A-TCTAAAA-T-C-TG--GTT-G-ATATGCACCATTCG----GCATC----------ACCC-AAAAA---AG------CA-TAGAGTAATCTATCA-T---TCTT-TA-ATCA---CACGTAGGAAATTA--T
gi|9 : acatTTTATTTAA-GTAGTTACCTAGCGCCGGTTCTCAT-TAGTCAAAACA-----CCTTTTA--AAA------GTT-T-AGATGAATTCTC-CGA-Tttta
blockSeqs : T T A A AGCAC TT GCAGTT GG AT T A A CCATT ATTG A CT A C A C G C C CTTG T C A C T G C T TT GG G CGA T GTGGT T TTCCCA TCGTGAA T C G A G T AA TA G TGCACCAT GTTA TTAGTAGATG A GAG AAATAGT T T TA CTA TAGA A AT A C T A A . C G A C
blockSeqs : T C C . . . . TG A . . . . A A . . T . . . . G ATG T . . G . . . T TT AT . CC . AA . CCT T . . . . . . . CA . . . . . . T . G T . TT . TT C . A A A
blockSeqs : . A C . . . . G . . . . . A G . . T . . . . G ATG T . . G . . . T TT . . C . . . T . . . . . . . . TT . . . . . . T . . . . T . AC C . A G .
blockSeqs : . . . . . . A . . . . . A A . . T . . . . C G T . . A . . . T T . . C . . . T . . . . . . . . T . . . . . . A . . . . T . T C . . .
blockSeqs : . . . . T . . . A . . . C . . . . G T . . . C . . . . T . . A . . . A . . . . . . . . T . . . . . . T . . . . T . A . .
blockSeqs : . . . . . . . . . . G . . . . . . . . . . . G . . . T . . . . . . . . T . . . . . . T . . . . T .
blockSeqs : . . . . T . . . . . . . . T . . . . . . T . . . . T .
blockSeqs : . . T . . . . . . . . T . . . . . . A . . . . T .
blockSeqs : . . . . . . . . . . . T . . . . . . C . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . T .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ATG*
originalCons : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
finalCons : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATATG-CAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
Alignments
lowQualScore : 11111 111111 111 11 22222 1111 1111 11 1111 11111 11111111 1111111 11111111 1111111111 1111111 2222 1
lowQualScore : 3 8 5 6 66666 99 999999 000 55 6 6 8 00000 1111 3 77 5 6 5 5 5 5 0 0 4 8888 5 5 5 6 5 5 5 1 66 55 5 0000 5 55555 4 11111111 7777777 4 4 3 3 3 3 55 777 3 33333333 7777 3333333333 2 555 4444444 2 5 66 555 55555 3 33 2 6 6 3 3 3333 1 5 1 1
lowQualScore : . . . . ..... .. ...... ... .. . . . ..... .... . .. . . . . . . . . . .... . . . . . . . . .. .. . .... . ..... . ........ ....... . . . . . . .. ... . ........ .... .......... . ... ....... . . .. ... ..... . .. . . . . . .... . . . .
lowQualScore : 2 2 0 7 77777 22 222222 222 88 7 7 0 00000 7777 6 99 0 3 7 7 7 7 1 1 3 4444 0 7 7 6 7 7 7 4 44 77 7 7777 0 55555 0 55555555 0000000 0 0 6 6 6 6 00 777 6 22222222 1111 5555555555 9 000 4444444 9 7 88 000 99999 1 44 5 7 0 8 5 6666 0 0 0 0
consensus : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
Reference ( family-2701 ) : TCATTTAATTTTATTTCACGTGATCACCTAGCGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAACAAGTAAA---GTCTAATGGACAT--TA-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTCCA-ACAGAAAATTA--TCATTCATCACAGNTGCTGCCCNCANAAAT
gi|1 : TCATTTAATTTTATTTCACGTGATCACCTAACGCCGATTCTCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GAACAAAAAGTAAT---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTGCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--AC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATATCATTGCA-ACAGAATATTATTTCATTCATCATAGATGTT-CCCTCAAAAAT
gi|10 : GTTTT-------C-CA-T-TCTAATT-T-T-CGAAG---G-ATA--------CCT----GCACC----------ACCC-AA-----------------TA-AG--AT---CCA-T---TTCT-TAAATCATTACA-ACTG----TTA----ATTCATCACAGCTACTGTCCACACAAAT
gi|11 : CGCA-----TTG-ACCT-----GAGTTTT-------A-CC-GGTCTAAAAATGT-CG--G-T-A-ATA--------CCT-----CATC----------AGCC-GAAAA---AA----------A-AA-------TCA-TAGAGTAT-TATATCAatt
gi|11 : TTTTTTCGGCTGATG----AGG-TATT-ACCG-ACATTTTT-AGACCGGTAAAAC---TCAGGTCA-ATG-CGAGC-CTCGCATAGTGGTTTG-A--T-----Gagcctcgcatagtggtttgatg
gi|12 : tgatataatactctatgatttTCATTTGATTTTATTTTAAGTGATTACCTAACAGCGATTC
gi|13 : tggggcttgttttctggattgtggaaaataaaaaaaaaaagaataaaaatattaaCAT-TGGTTAAAACA-----CCTTTTA--AGA------ATT-GGAAGTGA--TTTTTCGA-TCAC--TACCC-----GAGCAACAAGTAAA---GTCTAATGAACAT--TA-TTTct
gi|14 : TAAATTGGCCTGATGGA--T--TAATTTTGTCTTATATGACATAAAA-----GTGATAAGA-AATGCAATCTTATATTTTGTC
gi|15 : tcaagcact-TCTAAAA-T-T-CA--G-TAG-ATA--------C-T----GCATC----------ACCC-CAAAA---AA------TATTA-AGT-AT---TCA-T---TT
gi|16 : aatgaacattatt-TTTTGTTGT-TGTGATATAAAAT-TAAATGAataacaaaagaag
gi|17 : tctattaaacaaaatcctC----------ACCC-GAAAA---AA------TA-TA-AG--AC---TCA-T---TTCT-TACATCTTTCCA-
gi|18 : ----GCATC----------ACCC-GAAAA---AA------AA-TA-AG--AT---TCA-T---TTCG-TATATC
gi|19 : C-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATA
gi|2 : TCATTTAATTTTATTCCACGTGACCTCCTAGCGCCGATTCTGAT-TGGTTAAAAAA-----CCTTTGA--AGA------ATT-G-AGGTGA--TTTT-CGA-TCAC-GTACCT-----GACCAACAAGTAAA---GTCTAATGGACAT--TG-TTTTGTTGT-TGTAATATAAAAT-TAAATGATAAGA-AATA-AATCTTATATTTTTTCGGGTGATAT-GCAGGTTATC-ACCG-AGA-TTTT-AGA-CGGTAAAACTTTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GCATC----------ACCC-GAAAA---AA------TA-TA-AG--AT---TCA-T---TTCT-TATAatactgtat
gi|3 : aaataGCCGTTTCTCATATTGTTAAAGCAAGCACCCTTTTCTTAGAGCAGTTATT-A-AGGTGAA-TTTT-CAAATCACAGTACTTCCATTGAA--ACAAGCAGA---AT--AA-GAAC----TA-CTTTAT-------AATGAAAAAT-GAAA--AAAAGAGAATA-AATCT-ATATTTTTG-GGGTGATCTTGCAGGTTATC-ACAG-A-A-TTTTGAGA-CAGTTTATTTTTTCAATTCA-ATGCC--GCTTTCGCGCA------TG-A--A-----GATTTTT-------ATCC-G-TTT--AA-T-T-TG--G-CAG-ACA--------CCT----GCATC----------ATCCAGAAAAGAGAA------TG-T--AG--AT---T-A-----TTCT-T-TATTACTCTT-AC--AAAATTA--aa
gi|4 : tTCATT-AATTTTATTT-ACGTGATCAC-TAGCGCCGATTCTCAT-TGGTTAA--CA-----CCTTTTA--AGA------ATTTG-AGGTGA--TTTT-CAA-TCAC-GTACCT-----GAACAACATGTAA----GTCTAATGAACGT--TA-TTTTTCTGT-TGTAATATAAAATCTATATGATAA-----TA-AATCTTAT--TTTTTCGG-TGATAT-GCAG-TTATC-ACCGAAGA-TTTT-AGA-CGGTAAAAC-TTTCA--TCA-ATG-C--GC-TTCGCGCA-----TTG-A--T-----GAGTTTT-------A-CC-G-TCTAAAA-T-T-CG--G-T-G-ATA--------CCT----GC--T----------ACCC-GAAAA---AA-------A-TATAG--AT---TCA-----TTCT-TATctacccca
gi|5 : taCAATTAAA---GTCTAATGAGCATCTTT-TTTTGTCGT-TGTGATATAAAAT-TAAATGATAAGA-AATG-A----CATATTTTTTCGACTGAT-T--CAGG-TGTC-ACCG-AAA-T---------------ACT------------TG-A--GC-TTCGCGCA-----TTG-A--T-----G---TGC-------A-CA-G-TAT--AT-T-T-CG--G-T-G-ATA--------CCT----GAATC--------------------------------A-TA-AG--AG---TCA-T---TTCC-TAtg
gi|6 : at-AATG-AATTTT-TGTTTCCCCGGGTGAT---GCAGGT-ATCCATCG-ACA-ATTT-GTA-TAG-AAAACTTTTGT--TTAGAAG-G--AC---CGTGC----------------------TTTC-------A----G-TCCAAAT-T-TTCG--G-T-GGATC--------GCT----ACATC----------ACCC-GATAA---AA------AA-TT-AA--AT---TCA-T---TTCTAAATACC-TTCCA-ATAGAAaacgaattgtttcgcacatc
gi|7 : gTCGCGCAAA---TTGTA--TTCCCAGAGTTTTTCGTGAAA-CCCG-TCTAAAA-T-T-CG--G-T-G-ATA--------CCTGTTAGCACCTTAGTAGATGGCCT-GAAAA---AAAAATAGTA-TA-GA--GC---TCATT---TTCT-TATA
gi|8 : gcatg-TCCGC-CA-----T-G-A--T-----GATTTTTT------A-CC-A-TCTAAAA-T-C-TG--GTT-G-ATATGCACCATTCG----GCATC----------ACCC-AAAAA---AG------CA-TAGAGTAATCTATCA-T---TCTT-TA-ATCA---CACGTAGGAAATTA--T
gi|9 : acatTTTATTTAA-GTAGTTACCTAGCGCCGGTTCTCAT-TAGTCAAAACA-----CCTTTTA--AAA------GTT-T-AGATGAATTCTC-CGA-Tttta