lowQualScore                  :         1    1      1    4              
lowQualScore                  :         .    .      .    .              
lowQualScore                  :         3    3      3    0              
consensus                     :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTCT
Reference ( gi|9 )            :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTCT
gi|11                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTCT
gi|10                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTCT
gi|15                         :    GGCCT-TTTT-ATGTAC-ACAA-TCGTACCTTGTTCT
gi|14                         :    GGCCT-TTTT-ATGTAT-ACAA-CCGTACCTTGTTCT
gi|12                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGCTCT
gi|30                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTT
gi|29                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTT
gi|28                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTT
gi|21                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTT
gi|17                         :    GGTCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTCTt
gi|18                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGAACCTTGTTCT
gi|19                         :    GGCCT-TTT--ATGTAT-ACAA-TCGTACCTTGTTCT
gi|24                         :    GGCCT-TTTT-ATGTAT-ACAA-TTGTACCTTGTT
gi|16                         :   gGGCTT-TTTT-ATGTAT-ACAA-TCGTACCTTATTCT
gi|6                          :    GGCCT-TTTT-ATATAT-ACAA-TTGTACCTTGTTCT
gi|25                         :    GGCCT-TTTT-ATGTAT-ACAA-TCGTA-CTTGTTCTt
gi|3                          :    GGCCT-CTT--ATGTAT-ACAA-TCGTACCTTGTTCT
gi|31                         :    GGCCT-TTT--ATGTAT-ACAA-TCGTACCTTGTTtt
gi|20                         :    GGCCT-TTTT-ATATAT-ACAA-TCGTAACTTGTTC
gi|7                          :    GGCCT-TTTT-ATGAAT-AAAA-TCGTACCTTGTTCT
gi|4                          :    GGCCTGTTTT-ATGTAT-ACAA-TCGTA-CTTGTTCTt
gi|5                          :    GGCCT-TTTTTAT-TAT-ACAA-TCGTACCTTGTTCTt
gi|1                          :   gGGCTT-TTTT-ATGTAT-ACAA-TTGTACCTTATTTT
gi|2                          :   gGGCCT-TTTT-ATGTAT-ACAATTTGT-CCTTGTTCttcacagaca
gi|26                         : tggGGCCT-TTTT--TGTAT-ACAAATCGTACCTTG
gi|13                         :    cGCCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTCga
gi|27                         :   gaGCCT-TTTT-ATGTAT-ACAA-T-GTACCATTTTCT
gi|22                         :      CCT-TTTT-ATGTAT-ACAA-TCGTACCTTGTTt
gi|8                          :    ggcCC-TTAT-ATGTAT-ACAA-TCGTACCTTGTTCT
gi|23                         :       ga-TTTT-ATGTATTACAAATCTTACCTTGTTCTt

lowQualScore                  :         1    1          2              
lowQualScore                  :         .    .          .              
lowQualScore                  :         3    3          7              
consensus                     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
Reference ( family-2690 )     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|1                          :    GGCTT-TTTT-ATGTATACAA-TTGTACCTTATTTT
gi|10                         :   gGGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCTttcacagaca
gi|11                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|12                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGCTCT
gi|13                         :     GCCT-TTTT-ATGTATACAA-TCGTACCTTGTTC
gi|14                         :  gaGGCCT-TTTT-ATGTATACAA-CCGTACCTTGTTCT
gi|15                         :    GGCCT-TTTT-ATGTACACAA-TCGTACCTTGTTCT
gi|16                         :    GGCTT-TTTT-ATGTATACAA-TCGTACCTTATTCT
gi|17                         :    GGTCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|18                         :    GGCCT-TTTT-ATGTATACAA-TCGAACCTTGTTCT
gi|19                         :    GGCCT-TTT--ATGTATACAA-TCGTACCTTGTTCT
gi|2                          :    GGCCT-TTTT-ATGTATACAATTTGT-CCTTGTTC
gi|20                         : tggGGCCT-TTTT-ATATATACAA-TCGTAACTTGTTC
gi|21                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTT
gi|22                         :      CCT-TTTT-ATGTATACAA-TCGTACCTTGTTt
gi|24                         : ggcGGCCT-TTTT-ATGTATACAA-TTGTACCTTGTT
gi|25                         :   gGGCCT-TTTT-ATGTATACAA-TCGTA-CTTGTTCT
gi|26                         :    GGCCT-TTTT--TGTATACAAATCGTACCTTG
gi|27                         :    cGCCT-TTTT-ATGTATACAA-T-GTACCATTTTCTga
gi|28                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTt
gi|29                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTT
gi|3                          :    GGCCT-CTT--ATGTATACAA-TCGTACCTTGTTCT
gi|30                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTtt
gi|31                         :    GGCCT-TTT--ATGTATACAA-TCGTACCTTGTT
gi|4                          :    GGCCTGTTTT-ATGTATACAA-TCGTA-CTTGTTCT
gi|5                          :    GGCCT-TTTTTAT-TATACAA-TCGTACCTTGTTCTt
gi|6                          :   gGGCCT-TTTT-ATATATACAA-TTGTACCTTGTTCT
gi|7                          :    GGCCT-TTTT-ATGAATAAAA-TCGTACCTTGTTCTt
gi|8                          :       CC-TTAT-ATGTATACAA-TCGTACCTTGTTCTt
gi|9                          :  gaGGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCTt

Unaligned ( gi|23 ): CATTTTATGTATTACAAATCTTACCTTGTTCT

lowQualScore                  :         1    1          2              
lowQualScore                  :         .    .          .              
lowQualScore                  :         3    3          7              
consensus                     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
Reference ( family-2690 )     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|1                          :    GGCTT-TTTT-ATGTATACAA-TTGTACCTTATTTT
gi|10                         :   gGGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCTttcacagaca
gi|11                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|12                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGCTCT
gi|13                         :     GCCT-TTTT-ATGTATACAA-TCGTACCTTGTTC
gi|14                         :  gaGGCCT-TTTT-ATGTATACAA-CCGTACCTTGTTCT
gi|15                         :    GGCCT-TTTT-ATGTACACAA-TCGTACCTTGTTCT
gi|16                         :    GGCTT-TTTT-ATGTATACAA-TCGTACCTTATTCT
gi|17                         :    GGTCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|18                         :    GGCCT-TTTT-ATGTATACAA-TCGAACCTTGTTCT
gi|19                         :    GGCCT-TTT--ATGTATACAA-TCGTACCTTGTTCT
gi|2                          :    GGCCT-TTTT-ATGTATACAATTTGT-CCTTGTTC
gi|20                         : tggGGCCT-TTTT-ATATATACAA-TCGTAACTTGTTC
gi|21                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTT
gi|22                         :      CCT-TTTT-ATGTATACAA-TCGTACCTTGTTt
gi|24                         : ggcGGCCT-TTTT-ATGTATACAA-TTGTACCTTGTT
gi|25                         :   gGGCCT-TTTT-ATGTATACAA-TCGTA-CTTGTTCT
gi|26                         :    GGCCT-TTTT--TGTATACAAATCGTACCTTG
gi|27                         :    cGCCT-TTTT-ATGTATACAA-T-GTACCATTTTCTga
gi|28                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTt
gi|29                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTT
gi|3                          :    GGCCT-CTT--ATGTATACAA-TCGTACCTTGTTCT
gi|30                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTtt
gi|31                         :    GGCCT-TTT--ATGTATACAA-TCGTACCTTGTT
gi|4                          :    GGCCTGTTTT-ATGTATACAA-TCGTA-CTTGTTCT
gi|5                          :    GGCCT-TTTTTAT-TATACAA-TCGTACCTTGTTCTt
gi|6                          :   gGGCCT-TTTT-ATATATACAA-TTGTACCTTGTTCT
gi|7                          :    GGCCT-TTTT-ATGAATAAAA-TCGTACCTTGTTCTt
gi|8                          :       CC-TTAT-ATGTATACAA-TCGTACCTTGTTCTt
gi|9                          :  gaGGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCTt


blockSeqs                     :         G    T          T
blockSeqs                     :         .    .          A
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .
blockSeqs                     :         .    .          .


blockSeqCons                  :    
originalCons                  :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
finalCons                     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT

Unaligned ( gi|23 ): CATTTTATGTATTACAAATCTTACCTTGTTCT

lowQualScore                  :         1    1          2              
lowQualScore                  :         .    .          .              
lowQualScore                  :         3    3          7              
consensus                     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
Reference ( family-2690 )     :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|1                          :    GGCTT-TTTT-ATGTATACAA-TTGTACCTTATTTT
gi|10                         :   gGGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCTttcacagaca
gi|11                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|12                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGCTCT
gi|13                         :     GCCT-TTTT-ATGTATACAA-TCGTACCTTGTTC
gi|14                         :  gaGGCCT-TTTT-ATGTATACAA-CCGTACCTTGTTCT
gi|15                         :    GGCCT-TTTT-ATGTACACAA-TCGTACCTTGTTCT
gi|16                         :    GGCTT-TTTT-ATGTATACAA-TCGTACCTTATTCT
gi|17                         :    GGTCT-TTTT-ATGTATACAA-TCGTACCTTGTTCT
gi|18                         :    GGCCT-TTTT-ATGTATACAA-TCGAACCTTGTTCT
gi|19                         :    GGCCT-TTT--ATGTATACAA-TCGTACCTTGTTCT
gi|2                          :    GGCCT-TTTT-ATGTATACAATTTGT-CCTTGTTC
gi|20                         : tggGGCCT-TTTT-ATATATACAA-TCGTAACTTGTTC
gi|21                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTT
gi|22                         :      CCT-TTTT-ATGTATACAA-TCGTACCTTGTTt
gi|24                         : ggcGGCCT-TTTT-ATGTATACAA-TTGTACCTTGTT
gi|25                         :   gGGCCT-TTTT-ATGTATACAA-TCGTA-CTTGTTCT
gi|26                         :    GGCCT-TTTT--TGTATACAAATCGTACCTTG
gi|27                         :    cGCCT-TTTT-ATGTATACAA-T-GTACCATTTTCTga
gi|28                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTt
gi|29                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTT
gi|3                          :    GGCCT-CTT--ATGTATACAA-TCGTACCTTGTTCT
gi|30                         :    GGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTtt
gi|31                         :    GGCCT-TTT--ATGTATACAA-TCGTACCTTGTT
gi|4                          :    GGCCTGTTTT-ATGTATACAA-TCGTA-CTTGTTCT
gi|5                          :    GGCCT-TTTTTAT-TATACAA-TCGTACCTTGTTCTt
gi|6                          :   gGGCCT-TTTT-ATATATACAA-TTGTACCTTGTTCT
gi|7                          :    GGCCT-TTTT-ATGAATAAAA-TCGTACCTTGTTCTt
gi|8                          :       CC-TTAT-ATGTATACAA-TCGTACCTTGTTCTt
gi|9                          :  gaGGCCT-TTTT-ATGTATACAA-TCGTACCTTGTTCTt

Unaligned ( gi|23 ): CATTTTATGTATTACAAATCTTACCTTGTTCT