lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 2 222 22222222 1111 4444 55555555 44444444444444 222 111 3333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222 111111 2222222222 222222 111111 111 333 6666666666 1 444444 22 11111111 444 1111111111111111111111111111111111111111111111111111111111 22 2222 33 1 333 4 444 1 1 4 777 4 77777777777
lowQualScore : 88 1 3 111 22222222 7777 1111 8 88 0 6 8 66666666 8 6 2 66666666666666 000 8 888 4444 7 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 1111111 8 888888 6 7777777777 6 6 6 000000 333333 000 6 555 5 5 0000000000 1 6 6 2 6 444444 2 6 99 00 55555555 3 111 6 99 3333333333333333333333333333333333333333333333333333333333 8 44 22 7777 77 3 3 3 7 555 7 0 666 5 5 0 6 000 6 0 6 77777777777
lowQualScore : .. . . ... ........ .... .... . .. . . . ........ . . . .............. ... . ... .... . ................................................................................................................................................................................................................................................................................................................................................................................... . ....... . ...... . .......... . . . ...... ...... ... . ... . . .......... . . . . . ...... . . .. .. ........ . ... . .. .......................................................... . .. .. .... .. . . . . ... . . ... . . . . ... . . . ...........
lowQualScore : 33 2 2 000 00000000 2222 8888 2 88 8 4 0 88888888 8 5 5 88888888888888 777 3 333 7777 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 2222222 0 222222 7 8888888888 7 7 7 000000 555555 222 7 000 7 7 3333333333 0 0 7 5 7 777777 8 7 22 33 88888888 3 777 7 88 7777777777777777777777777777777777777777777777777777777777 0 88 22 2222 00 5 2 3 3 333 3 0 000 0 0 0 0 000 0 0 0 00000000000
consensus : ATAT--ATTGAACAATCGATATAATT-AGAG-T-G----CA-C-ACTA-TA-TCGTGGTGCCA-CGACCGAA-ACCTGGCATGTC-TG--TCCTGCCTGCCTGAACTAA-A-TGAA-AG-CCAAT--GAGTTTACTATTTATTACAAGGAAC--NCACAAGCACAC-----ACAAGA-AATACATC--AC-TAGACATGANGCG-A-TTNA--GGGAGTT----GGC-NTANG----CACATTGT-TA-C-GAN-GAT-A-----CA-ATGGT--TGCAGG--TCCAAAGGG--A---A---CCG--GAG-TA--C-GACC-GA-GAGTA-A---TAA-GGGC-A--ACCGGTGG-CTC-----GTG----TGAGC-A----CAG--AGCGGNATCCCAG-C-TTGT----CA--CTTNTCGC--TG-GGACNGA-AAGTG----C-C--GNCCGA-TCTGC-ATTA--CCC---------CG-TTT--CAA-AGGATCGCCTCCCT-G-ATGAGCG--TACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGCT-CTC---CCCTCCTTTGCAAAGAGG-GTGAGAGG-GATA-CC-GAG-ATT-G-T----TAT---C--CT--GAGT-AGCCCC-AA-TCAACGTTTACTTT-TAA----ACTTTGAT-TTTT-ANCT-TA-CA--TTCCCC-T--CCGTCTTTGT--AT----GACAGAAAAG-GA-TTG-AAACAACG------------------------GG-CCAGATC-GGACG-------ACCACTTTACTCAA-TTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACC-CGATTGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGT
Reference ( gi|1 ) : ATAT--ATTGAACAATCTATATAA-T-AGAG-T-G----CA-C-ACTA-TAGTCGTGGTGCCA-CGACCGAA-ACCTGGCATGTCATGTCTCCTGCCTGCCTGAACCAACAATGAACAGTCCAATCCGAGTTTACAATTTATTACAAGGAAT--TCACAAGAACA------ACAAGA-GATACATC--AT-TAGACATGATGCGTA-TTCA--GGTAGTT----GGC-TTATG----CACATTGT-TA-C-AAG-GAT-A-----CA-ATGGT--TGCA-G--TC--AAGGG--A---A---CCG--G---TA--C-GACC-GA-GAGTA-A---TAA-GGGC-A--ACCGGTGGCCTC----TGTG----TGAGC-A----CAA--AGCGGCATCCCAG-C-TTGT----CA--CTTGTC-C--TG-GGACCGAGAAGTG----C-C--GACCGA-TCTGC-ACTA--ACC---------TG-TTT--CAA-AGGAT-GCC-CCCT-G-ATGAGC---TACC-AATACTAC-AC-CTGGTACTCCA-G-A--GAGCT-CTC---CC-TCCTTTGCAAAGAGG-GTGAG-GA-GATG-AC-AAG-ATT-G-T----TAT---C--CT--GAGT-ACGTCC-AA-TCAACGTTTACTTTTTAA----ACTTTGATATTTT-ACTT-TA-CA--GTTCCC-T--CCGT-TTTGT--AT----GGCAGAAA---GA-TTG-AAACAAC-------------------------GG-CCAGATT-GGACG-------AC--------TCAA-T-ATACCCCCACCAGACCTGCCACAGACATCGATATGATCGTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCA-C-CGATTGGCAAATTG-CGTGGTTAGA-TAAAGGTATACGAGAAAGTAAAACAT---CCCGATTC-AAGAAACACATGAACTG-CATGTAGTTGGTG
gi|10 : ATATTAATTGAACAATCGA-AGCA-T-AGAG-T-GGCGCCA-C--CTA-T------GCTGCCA-CGACCAAA-ATCTGGCATGTC-------CTGC-TACCTGAACTCTGAATGAAAAGGCAAATAAGAGTTTACTATTTATTACAAAAAA---CCACAAGCACAT-----ACAAGA-AATACA-------TAAACATGATGTG-A-CTTAAGGGGAGTT----GGCGTTAAGGC--CACATTGT-TA-
gi|16 : aatatacatac--ATTGAACAATCGATATAATT-AGAGTT-G----CACC-ACTA-CA-TCGTAGTGCCA-CG-CCGAA-CCCTGG
gi|19 : ta--ATTGAACAATCGATATAATT-AGAG-TGG----CA-C-
gi|2 : attaTTTAACAATC-ATATAA-TTAGAT-G-G----CATC-ACTAATA-TCGTG-TGCC--CGACC-AA-ACCTGGCATGCCATGTCTCTTGCCT-CCTGAACCAACA-T-AACAGTCCAATCCGAGTTTACAATTTATTAC-AGGAAT--TCACAAGAACA------ACAAGA------ATC--ACGTAGACATGAAGCGAATTTCA--GTGAGTT----GAC-GTATATGGCCACA-TGT-TA-C-GAA-GATAA-----CATATGGT--T-CAGG--TC--CAGGG--A--------CGGAG---TA--C-CGCC-GA--AGT--A---TAA-GGGCAA--ACCGG-G--CTC-----GTG----TGAGCAA----CAGACAGCGG-ATCCCAGCC-TTGT----CA--C-TGTCGC--TG-GGA-CGA-AAGT-----C-C--GACCG--TCTGC-A-TA--CCC---------CGTTTT--CAA-AGGATCGCCTCCCTGG-ATGAGCG--TACCGAATACTAC-A--CTGGTACTCCAGG-A--GAGCT-CTC---TC-TCCTTTGC-AAGAGG-GTGAGAGA-GATA-CC-GAGAATT-G------TAT---C--CT--GAGT-AC--TC-AA-TCAACGTTTACTTT---A----ACTT---TAGTTT-ACTT-TA-C----TAACC-T--CCGT-CTTGT--AT----GAGAAAAG---GA-TTG--AACAACG------------------------GG-CCAGATG-GAACGACACTTTAC--------TCAT-TCATACC----CCAGACCTcac
gi|14 : -G----CA-CCACTA-TA-TCGTGATGCCA-CGACCAAA-ACCTGGCATGTCCTG--TCCTGCCTGCCTGAACTAtctctgttaagcaaccaattgcgacaagagaaa
gi|3 : gcgtgGTGGCGCCAATGAC-GATTACCTTGCATGTC------------TGC-TGAACTGA----GA------CAA---GAGTTTACTATTTATTACA--GAACAAGCACAAGCACACCGTCAATAAGCCAATATATTGAAT-T-GATTTTAGGCGCAGTTGA--AGC-GTTTAGCGGC-CTGGG-----ACGTTGTCTAGC-AATTGAT-AAATTACA-ATGGTATCGCA-GGATCCAAAGGG--GGGTA---CCG--GAAGTA--CCGATC-GA-G-GTATA---TGA-GGGC-ATAACCGGTGGCCTCAAAGTGTG----T-AGC-AGCGGCAG--AGCCGACTTCCAG-CCTTGTAATGTA--CTTTTGAC--TGAGGACGGA-AAGTG----C-CTAGCTCGA-TCTGC-ATTACCACTAAAAGCAATTG-TTT--CAAGAGGATTGCTTCCCT-GGATAAGCGCGTACC-ATTACTACTACGCTGGTACTCCA-G-AA-GAGCTTCTCGCCCC-TCTTTGGCAA-GCGG-GTGAGAGG-GATACAC-AAG-ATT-GGT----TAT---T--CTCTGAGT-A-GCCCTAA-TCGACGTTTATT----------ATTTTGGCTTTTA-AACT-TA--A--TTCCCC-T--CCGT-ATTAT--GTCTAGAGTAGAAAAAGGA-TTGCCAACACG-------------------------GG-ATAGATC-GGAAG-------Ag
gi|15 : ----CACATTGT-TA-CGAAG-GAT-A-----CA-ATGGT--TGAAGG--TCCAGAGGGGTA---A---CCG--GAGTTC--C-GACC-GA--AGTA-tcctctttacttcactat
gi|4 : cC--AAGGG--A---ATATCCA--G---TATAC-AACCTGACAAGCA-AGTATAACGGGC-A--AACCGTAGGCCC----AGTACTAATAATC-C----CAA--A-C--TATT--AA-C-TTAT----CA--CCAATT----TG-GGATAG-GAAGTGTTTTC-T--AATC-A-TCTGT--TTA--CCC---------CG-TTTTCCAT-AG-AT-TTC-ACTT-G-GTG-GT---CAC---GT-CTTT-TC-CATGTACTCCA-GCACTAAGCT-TCG---AC-TCCTGTGTAAAGAGG-TGGAG-TG-GGCA-CC-AAA-CCT-G-T----CACTGAC--TT--GAGTGAC-CCC-AA-TCAA
gi|11 : acatgcatttgacctcttcaacacgacatattgacagcacaaaattatttttacacatttattgaatgaacctgacaacgtctcacacattgacaacggatttccagagaggagtatacgagtgggcgcattgtaccaaccaaagggtcAA--AGTGGCAGCCCAG-T-CGAT----TAAACTTTCC-CACTG-AGACCGA-AAGGG----CTC--GCCTGAATCTCCCATTA--CCC---------T--TTT--CAA-GAGATTGCC-TCC----------------------CTA-------GGTACTCC--G-A--TGACT-CTC---CCCTCCTTTGCAAAGAGGCGTGAG-AATGATA-CC-CAA-ATTAG-TGTAATAT---CGACT----GT-AGCTCC-AAGTAAACTTTT-CTTaaaccacatataacatgtacc
gi|9 : aa-A--GAGCT-CTC---CCCTCCTTTGCAAAGAGG-ATGAGAGG-GATA-CC-GAG-ATT-G-T----TAT---C--CT--AAAT-AGCCCC-AA-TCAACGTGTACT----------ACTTTCAT-TTTT-AACT-TA--A--TTCCCC-T--CCGTCTTTGT--CT----GACAGAAAAG-GA-TTG-AAACAAC-------------------------GGGCCAGATC-GGACG-------ACCACTTTACTCAACT-AT-TCCCCGCCATACCTGCCACAGACATCGATATGA-------TCCACT------GGAGCCG-AAACACCCACACTGACTTCCACC-CGATTactt
gi|8 : TTGCATAGAGG-ATGAG-AG-GACT-ACCAAG-ATT-G-T----TAT---C--CT--GAGT-AGCCCC-AA-TCAACGTTTAC----TAATACTACTTTGAT-TTTT-AACT-TA--A--TTCCCC-T--CCGTCTTTGT--CT----GACAGAAGAT-GA-TTG-AAACAACG------------------------GG-TCAGATC-GGACGACCACT-AC--------TCAA-T--TATCCCC-CC-GACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGAAGCCGAAAAAACCCACACTGAATCCCACC-CGATTGGCAAATTGCCGTGGTTA
gi|6 : -AA-TGAACCTTTACTTTTTAA----ACTTTAATATTTTTACTT-TAATA--ATTCCCCT--CCGTCTTTGT--AT----GACAGAAA---GGGTTG-AAACAAC-------------------------AG-GCAAAGTAGGACA-------ACCACTTTACTCAA-TTATACCCCCA---GACCTGCCACAGACTTCGATATGAT-GTTCCTCCACTACCCACAGAGCTG-AAAA-CCCACACTGACTCCCA-TACAA-TGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGT
gi|12 : TTGACTTTTT-ACTTATA-CATAATTTCC-TTTCCGT-CTTGTGTAT----GACAGAAACGGGG-TTA-AAACNNNNNNNNNNNNNNNNNNNNNNNNNTCGGG-CCAGATC-GGACG-------ACCACTTAACTCAA-TTATAACCCC--TAGACCTGCCACAGACATCGATATGAT-GTACCTCCACTACCCA
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AAGTATTGATTGCAACATTCCATTTTAATTATCAACATTCCCTGGGAGATCAGGGTACCCTTGTACCTTAAATCCATTTGGCCTCAACCATAATATGACAAAACATACTTTTCACATTTATTGAAGAAACCAACCAATGCTTCACAAATCAAACAATAAGCAAATCAACAATTGAATTGGAATTAAATGGGCGCCTTCTATAATCCCAAGGGTCCCGAGGAATATTTGGAATACTGACCTGAGAACCAAGTATAACGGGCATACCGGTGGTCTGCCGTTTAGGCGCCAGTACCGGAAATCTCAAACTATTAATTTTACACCTGTTTGGGAATAGCAAGACATCTCAATTTGCCG
Unaligned ( gi|7 ): AATAGTTAATTGAACATTCCATTTGAATTACAACAATCCTCTAGTGGTCAGGTACCCTGAACTATGACCCAACGTGAGCCTCAACCAAAACATAACAAAATACAACTTACAAGTTTACACATTTATTGAAGAAACCAGCCAATGCTTCACATAATAAAACAAAAGCAAAAACAATCAGGGTAATTGGAATTTAATGGCCTGCATTGTATCATCTGGCAGGGGTCCCGAGTGGAATATTCCGGAATAAGCCCGACCTGGACCACAAGTATAAGACGATGGGGCAAA
Unaligned ( gi|13 ): GCAAAATACAATTTAGCTGAAATTAATTGAACAATCGGAATTAGAATGGCACCACCAATGGTGGAGCCTCAATCAAAA
Unaligned ( gi|17 ): AATATAATACATATCATTAATTGAACAATTGAAGTATAGAGTAACGCCACCTGTGGCGCCA
Unaligned ( gi|18 ): ATTTTACACCTATCTGGGATAGGAAGAGATCTCAAATTGTCCGT
Alignments
lowQualScore : 11111111111 1111 3333333333 11 77777777777777777777 11 222 444444 1 5555555555555 2222 2222 11111 11 2222 22222 1111 1 1 11 3333333333 2222 222 22222 1 1111 11 3333333 1 3333 1111111 1 222222222 22222 111111111 33333333333 11 4444444444444444444444444444444 11 111 111111 111 3333333 1111 333333333 1 555555555555555555555555 111 1 1 2 222 1 1 22
lowQualScore : 99 0 5 5 55555555555 55 5555 4 1 55 4 5 8 7777777777 999 11 44444444444444444444 4 55 444 2 444444 0 3 0 4444444444444 1111 1 7777 1 55555 11 1 8888 0 8 00000 1 4444 0 0 33 2 8 99 3333333333 0000 8 8 222 88888 0 4444 33 4444444 0 1111 3333333 6 999999999 11 9 00000 8 8 8 999999999 1 88 88 0 88888888888 99 8 9 0 8 0000000000000000000000000000000 88 6 55 6 555 5 1 1 5 2 5 5 555555 000 77 77 3 5 5 8888888 9999 5 1 5 000000000 0 1 1 5 55 5 88 0 77 555555555555555555555555 66 1 2 66 888 88 1 0 0 3 6 3 6 2 5 3 3 0 111 5 4 5 77
lowQualScore : .. . . . ........... .. .... . . .. . . . .......... ... .. .................... . .. ... . ...... . . . ............. .... . .... . ..... .. . .... . . ..... . .... . . .. . . .. .......... .... . . ... ..... . .... .. ....... . .... ....... . ......... .. . ..... . . . ......... . .. .. . ........... .. . . . . ............................... .. . .. . ... . . . . . . . ...... ... .. .. . . . ....... .... . . . ......... . . . . .. . .. . .. ........................ .. . . .. ... .. . . . . . . . . . . . . ... . . . ..
lowQualScore : 22 7 4 0 00000000000 11 1111 3 4 44 0 7 0 6666666666 000 00 22222222222222222222 0 88 555 5 000000 0 2 2 8888888888888 2222 0 0000 0 00000 00 0 0000 8 0 00000 0 8888 0 0 88 5 0 44 8888888888 2222 0 0 000 88888 0 8888 22 8888888 0 2222 0000000 0 666666666 88 6 00000 0 8 0 222222222 0 88 88 8 00000000000 00 0 6 8 0 4444444444444444444444444444444 88 7 88 7 888 7 7 4 7 7 7 7 999999 000 99 99 0 0 7 5555555 4444 7 0 7 999999999 7 4 3 7 99 7 00 1 11 000000000000000000000000 44 4 3 00 555 88 0 8 0 2 5 2 7 5 5 0 0 0 000 5 0 5 55
consensus : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGCGCCA-CGACCGAA-ACCTGGCATGT-CATGTC--C--TGCCTGCCTGAACC--GAC-ATGAA-A--GTCCAATCCGAGTTTACNATTTATTACAAGGAACT--CACAAGNACAC-----ACAAGA-AATACATCG--------T-TAGACA----TGANGCG-A--TTCA--GGGAGTTGGC-TTANG----CACATTGT-TA-----CGAAG-A--TA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CCGGA-G-TAC-GACC-GA-GAGTA-A---TAA-GGGCA--A-CCGGT-GGCCTC---GTGTG-AGCAG---CAAA--GCGGNATCCCAGCCTTGT----TAA--CTTNTCAC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTT-CAA-AGGATTGCCTC-CCT-G-ATGAGCG--TACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGCT-CTC--CCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-G-T----TAT---CCT--GA--GTAGCCCCAA-TCAACGTTTAC-TTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
Reference ( family-2669 ) : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGTGCCA-CGACCGAA-ACCTGGCATGT-C-TGTC--C--TGCCTGCCTGAACT--AA--ATGAA-A--G-CCAAT--GAGTTTACTATTTATTACAAGGAACN--CACAAGCACAC-----ACAAGA-AATACATCA--------C-TAGACA----TGANGCG-A--TTNA--GGGAGTTGGC-NTANG----CACATTGT-TA-----CGANG-A--TA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CCGGA-G-TAC-GACC-GA-GAGTA-A---TAA-GGGCA--A-CCGGT-GGC-TC---GTGTG-AGCA----CAGA--GCGGNATCCCAGC-TTGT----CA---CTTNTCGC-----TG-GGACNGA-AAGTG----C-C--GNCCGA-TCTGC-ATTACCCC-----------GTTT--CAA-AGGATCGCCTC-CCT-G-ATGAGCG--TACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGCT-CTC--CCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-G-T----TAT---CCT--GA--GTAGCCCCAA-TCAACGTTTAC-TTTT-AA-ACTTTGA-T--TTTT-ANCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGT
gi|1 : ATAT--ATTGAACAATCTATATAAT-AGAG-T-G----CA-C-ACTA-TAGTCGTGGTGCCA-CGACCGAA-ACCTGGCATGT-CATGTCTCC--TGCCTGCCTGAACC--AACAATGAACA--GTCCAATCCGAGTTTACAATTTATTACAAGGAATT--CACAAGAACA------ACAAGA-GATACATCA--------T-TAGACA----TGATGCGTA--TTCA--GGTAGTTGGC-TTATG----CACATTGT-TA-----CAAGG-A--TA-CA-ATGGT--TGCAG--TC--AAGGG--A---A---CCGG----TAC-GACC-GA-GAGTA-A---TAA-GGGCA--A-CCGGT-GGCCTCT--GTGTG-AGCA----CAAA--GCGGCATCCCAGC-TTGT----CA---CTTGTC-C-----TG-GGACCGAGAAGTG----C-C--GACCGA-TCTGC-ACTAACCT-----------GTTT--CAA-AGGAT-GCC-C-CCT-G-ATGAGC---TACC-AATACTAC-AC-CTGGTACTCCA-G-A--GAGCT-CT---CCCTCCTTTGCAAAGAGG-GTGAG-GAGATGA-CAAG-ATT-G-T----TAT---CCT--GA--GTACGTCCAA-TCAACGTTTACTTTTT-AA-ACTTTGA-TA-TTTT-ACTT-TAC--AG----TTCCCTCCGT-TT-TGTAT-GG-CAG-AAA---GATTG-AAACAA------------------------C-GGCCAGATTGGACG---------ACTCAA-TATACCCCCACCAGACCTGCCACAGACATCGATATGATCGTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCA-CCGATTGGCAAATTG-CGTGGTTAGA-TAAAGGTATACGAGAAAGTAAAACAT---CCCGATTC-AAGAAACACATGAACTG-CATGTAGTTGGT
gi|10 : ATATTAATTGAACAATCGAAGCA--TAGAG-T-GGCGCCA-C--CTA-T------GCTGCCA-CGACCAAA-ATCTGGCATGT-C-------C--TGC-TACCTGAACTCTGA--ATGAA-AAGG-CAAATAAGAGTTTACTATTTATTACAAAAAAC---CACAAGCACAT-----ACAAGA-AATACA-------------TAAACA----TGATGTG-A--CTTAAGGGGAGTTGGCGTTAAGGC--CACATTGT-TA-----g
gi|11 : aatatacatacAAA--GTGGCAGCCCAGT-CGAT----TAAACTTTCCCAC-----TG-AGACCGA-AAGGG----CTC--GCCTGAATCTCCCATTACCCT------------TTT--CAA-GAGATTGCCTC-CCT-A-----------------------------GGTACTCC--G-A--TGACT-CTC--CCCTCCTTTGCAAAGAGGCGTGAGAATGATAC-CCAA-ATTAG-TGTAATAT---C----GACTGTAGCTCCAAGTAAACTTTT-C-TT
gi|12 : aaTTGACT--TTTT-ACTTATAC--ATAATTTCCTTTCCGTCTTGTGTAT-GA-CAG-AAACGGGGTTA-AAACNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGCCAGATCGGACGA-CCACTTAACTCAATTATAACCCC-T-AGACCTGCCACAGACATCGATATGAT-GTACCTCCACTACCCAactt
gi|13 : --ATTGAACAATCGG---AATTAGAA-TGG----CACC-ACCA--A-TGGTGGAGCCT-CAATCAAA-A
gi|14 : gcaaaatacaatttagctgaaatta-G----CA-CCACTA-TA-TCGTGATGCCA-CGACCAAA-ACCTGGCATGTCC-TGTC--C--TGCCTGCCTGAACT--A
gi|15 : gcgtg----CACATTGT-TA-----CGAAGGA--TA-CA-ATGGT--TGAAGG-TCCAGAGGGGTA---A---CCGGA-GTTCC-GACC-GA--AGTA-g
gi|16 : c--ATTGAACAATCGATATAATTAGAGTT-G----CACC-ACTA-CA-TCGTAGTGCCA-CG-CCGAA-CCCTGG
gi|17 : ta--ATTGAACAATTGAAGTA--TAGAG-T-A-----A-C-GCCA-CC-T-GTGGCGCCA-
gi|19 : aatataatacatatcatta--ATTGAACAATCGATATAATTAGAG-TGG----CA-C-
gi|2 : attaTTTAACAATC-ATATAATTAGAT-G-G----CATC-ACTAATA-TCGTG-TGCC--CGACC-AA-ACCTGGCATGC-CATGTC--TCTTGCCT-CCTGAACC--AAC-ATAAC-A--GTCCAATCCGAGTTTACAATTTATTACA-GGAATT--CACAAGAACA------ACAAGA-A-----TCA--------CGTAGACA----TGAAGCG-AATTTCA--GTGAGTTGAC-GTATATGGCCACAT-GT-TA-----CGAAG-A--TAACATATGGT--T-CAGG-TCCA--GGG--A--------CGGA-G-TAC-CGCC-GA--AGTA-----TAA-GGGCA--AACCGG---GC-TC---GTGTG-AGCAA---CAGACAGCGG-ATCCCAGCCTTGT----CA---CT-GTCGC-----TG-GGAC-GA-AAGT-----C-C--GACCG--TCTGC-AT-ACCCC-----------GTTTT-CAA-AGGATCGCCTC-CCTGG-ATGAGCG--TACCGAATACTAC-A--CTGGTACTCCAGG-A--GAGCT-CT---CTCTCCTTTGC-AAGAGG-GTGAGAGAGATAC-CGAGAATT-G------TAT---CCT--GA--GTA--CTCAA-TCAACGTTTAC-TTT---A-ACTTTAG-----TTT-ACTT-TAC--------TAACCTCCGTC-T-TGTAT-G---AG-AAA-AGGATTG--AACAA------------------------CGGGCCAGATGGAACGA--CACTTTACTCATTCATA---CC-CCAGACCTcac
gi|3 : GTGGCGCCAATGAC-GATTACCTTGCATGT-C-TG--------------CTGAACT--GA----GA--------CAA---GAGTTTACTATTTATTACA--GAACAAGCACAAGCACACCGTCAATAAGCCAATATATTGAATTGATTT-TAGGCGCAGTTGAAGCG----TTTA--G-----CGGC-CTGGG-----ACGTTGTCTAGCAATTGATA-AATTA-CA-ATGGTATCGCAGGATCCAAAGGG--GGGTA---CCGGAAG-TACCGATC-GA-G-GTATA---TGA-GGGCATAA-CCGGT-GGCCTCAAAGTGTGTAGCAGCGGCAGA--GCCGACTTCCAGCCTTGTAATGTA---CTTTTGAC-----TGAGGACGGA-AAGTG----C-CTAGCTCGA-TCTGC-ATTACCACTAAAAGCAATTGTTT--CAAGAGGATTGCTTC-CCT-GGATAAGCGCGTACC-ATTACTACTACGCTGGTACTCCA-G-AA-GAGCTTCTCGCCCCTCTTTGGCAA-GCGG-GTGAGAGGGATACACAAG-ATT-GGT----TAT---TCTCTGA--GTAGCCCTAA-TCGACGTTTAT-T-------ATTTTGG-C--TTTTAAACT-TA---AT----TCCCCTCCGTATTATGTCTAGAGTAGAAAA-AGGATTGCCAAC-A------------------------CGGGATAGATCGGAAGATCCTCTTTACTTCACTATtctctgttaagcaaccaattgcgacaagagaaa
gi|4 : GG-TCCAA-GGG--A---ATATCCAGT-A-TAC-AACCTGACAAGCA-AGTATAACGGGCA--A-ACCGTAGGC-CC---------AGTA----CTAA--T---AATCCCAAA-CTAT----TAA--CTTATCACCAATTTG-GGATAGG-AAGTGTTTTC-T--AATC-A-TCTGT--TTACCCC-----------GTTTTCCAT-AG-ATT---TCACTT-G-GTGGTCA--CGTC-TTTTCCAT-------GTACTCCA-GCACTAAGCT--TC--GACTCCTGTGTAAAGAGG-TGGAGTGGG-CAC-CAAA-CCT-G-T----CACTGACTT--GA--GTGACCCCAA-TCAA
gi|6 : acatgcatttgacctcttcaacacgacatattgacagcacaaaattatttttacacatttattgaatgaacctgacaacgtctcacacattgacaacggatttccagagaggagtatacgagtgggcgcattgtaccaaccaaagAA-TGAACCTTTAC-TTTTTAA-ACTTTAA-TATTTTT-ACTT-TAATAAT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-GGG-TTG-AAACAA------------------------CAGGCAAAGTAGGACAA-CCACTTTACTCAATTATACCCCC---AGACCTGCCACAGACTTCGATATGAT-GTTCCTCCACTACCCACAGAGCTG-AAAA-CCCACACTGACTCCCATACAAT-GGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGTaaaccacatataacatgtacc
gi|8 : TTGCATAGAGG-ATGAGAGGACTAC-CAAG-ATT-G-T----TAT---CCT--GA--GTAGCCCCAA-TCAACGTTTAC-TAAT-ACTACTTTGA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAG-ATGATTG-AAACAA------------------------CGGGTCAGATCGGACGA-CCAC--TACTCAATTAT-CCCCC-C--GACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGAAGCCGAAAAAACCCACACTGAATCCCACCCGATTGGCAAATTGCCGTGGTTA
gi|9 : -A--GAGCT-CTC--CCCTCCTTTGCAAAGAGG-ATGAGAGGGATAC-CGAG-ATT-G-T----TAT---CCT--AA--ATAGCCCCAA-TCAACGTGTAC-T-------ACTTTCA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAACTATTCCCCG-CCATACCTGCCACAGACATCGATATGA-------TCCACT------GGAGCCG-AAACACCCACACTGACTTCCACCCGATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAGTATTGATTGCAACATTCCATTTTAATTATCAACATTCCCTGGGAGATCAGGGTACCCTTGTACCTTAAATCCATTTGGCCTCAACCATAATATGACAAAACATACTTTTCACATTTATTGAAGAAACCAACCAATGCTTCACAAATCAAACAATAAGCAAATCAACAATTGAATTGGAATTAAATGGGCGCCTTCTATAATCCCAAGGGTCCCGAGGAATATTTGGAATACTGACCTGAGAACCAAGTATAACGGGCATACCGGTGGTCTGCCGTTTAGGCGCCAGTACCGGAAATCTCAAACTATTAATTTTACACCTGTTTGGGAATAGCAAGACATCTCAATTTGCCG
Unaligned ( gi|7 ): AATAGTTAATTGAACATTCCATTTGAATTACAACAATCCTCTAGTGGTCAGGTACCCTGAACTATGACCCAACGTGAGCCTCAACCAAAACATAACAAAATACAACTTACAAGTTTACACATTTATTGAAGAAACCAGCCAATGCTTCACATAATAAAACAAAAGCAAAAACAATCAGGGTAATTGGAATTTAATGGCCTGCATTGTATCATCTGGCAGGGGTCCCGAGTGGAATATTCCGGAATAAGCCCGACCTGGACCACAAGTATAAGACGATGGGGCAAA
Unaligned ( gi|18 ): ATTTTACACCTATCTGGGATAGGAAGAGATCTCAAATTGTCCGT
Alignments
lowQualScore : 11111111111 1111 1 22222 11 333333333 11 222 444444 1 666666666666 2222 4444444444444444 1 3333333333 1 1 1 11 3333333333 1111 1 1 3333333333333333 1 11 222222 1111 22222222222222 1111 33333 111111111 444444444444 44444444444444444444444444444 2222 111111 111 4444444 1111 333333333 1 555555555555555555555555 1111 11 1 1 222 1 1 11
lowQualScore : 99 0 5 5 55555555555 55 5555 4 66 55 4 5 0 0 00000 5 3 11 333333333 3 888 1 55 333 1 444444 0 111111111111 1111 1 1111111111111111 0 0 0000000000 0 22 0 0 0 33 2 6 77 1111111111 6 6666 3 3 7777777777777777 6 99 8 88 888888 7777 55555555555555 1 99 4 9999 1 88 33333 6 8 8 999999999 0 88 88 0 111111111111 3 3 0 8 77777777777777777777777777777 0 0000 6 99 6 5 5 5 5 2 5 5 555555 000 77 77 3 5 5555555 9999 5 0 5 000000000 0 1 1 5 55 5 88 0 77 555555555555555555555555 5 1 0 66 2222 88 1 0 33 6 3 6 1 5 1 1 5 111 5 1 5 88
lowQualScore : .. . . . ........... .. .... . .. .. . . . . ..... . . .. ......... . ... . .. ... . ...... . ............ .... . ................ . . .......... . .. . . . .. . . .. .......... . .... . . ................ . .. . .. ...... .... .............. . .. . .... . .. ..... . . . ......... . .. .. . ............ . . . . ............................. . .... . .. . . . . . . . . ...... ... .. .. . . ....... .... . . . ......... . . . . .. . .. . .. ........................ . . . .. .... .. . . .. . . . . . . . . ... . . . ..
lowQualScore : 22 7 4 0 00000000000 11 1111 3 11 44 0 7 8 4 22222 0 2 00 222222222 0 222 0 88 000 0 000000 0 888888888888 2222 0 0000000000000000 0 2 2222222222 8 88 0 0 0 88 5 7 33 8888888888 7 3333 3 3 6666666666666666 0 00 0 88 000000 0000 77777777777777 0 22 3 0000 0 33 33333 7 8 0 222222222 6 88 88 8 222222222222 8 8 8 0 22222222222222222222222222222 8 2222 7 22 7 0 7 7 7 7 7 7 999999 000 99 99 0 0 2222222 4444 7 7 7 999999999 7 4 3 7 99 7 00 1 11 000000000000000000000000 7 4 1 00 7777 88 0 8 22 5 2 7 0 5 0 0 5 000 5 0 5 00
consensus : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAA--CCGACA-TG-AA-AGTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAACGGGCAT-A-CCGGT-GGCCT--C---GTGTG----AGCG-CAG-A--GCGG--ATCCCAGCC--TTGTCA---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTC-CCTGGATGAGCG--TACC-ANTACTAC-AC-CTGGTACTCCAG-A--GAGCT-CTC--CCCTCCTTTGCAAAGAGG-GTGAGAG-GGATAC-CGAG-ATT-G-T----TAT---CCT--GA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
Reference ( family-2669 ) : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAA--CCGACA-TG-AA-AGTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAA-GGGCA--A-CCGGT-GGCCT--C---GTGTG----AGCAGCAA-A--GCGG-NATCCCAGCC--TTGTTA---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTC-CCTG-ATGAGCG--TACC-ANTACTAC-AC-CTGGTACTCCAG-A--GAGCT-CTC--CCCTCCTTTGCAAAGAGG-GTGAGAG-GGATAC-CGAG-ATT-G-T----TAT---CCT--GA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
gi|1 : ATAT--ATTGAACAATCTATATAAT-AGAG-T-G----CA-C-ACTA-TAGTCGTGGT-GCCA-CGACCGAA-ACCTGGCATGTCATGTCTCC--TGCCTGCCTGAA--CCAACAATG-AACAGTCCAATCCGAGTTTACAATTTATTACAAGGAAT--TCACAAGAACA------ACAAGA-GATACATCA--------TTAGACA----TGATGCGTA--TT------CA--GGTA-GTTGGC-TTATG----CACATTGTTACAAGG-ATA-CA-ATGGT--TGCAG--TC--AAGGG--A---A---CC-GG----TAC-GACC-GA-GA-----GTA-A---TAA-GGGCA--A-CCGGT-GGCCT--CT--GTGTG----AGCA-CAA-A--GCGG-CATCCCAGC---TTGTCA----CTTGTC--C-----TG-GGACCGAGAAGTG----C-C--GACCGA-TCTGC-ACTAACCT-----------GTTT-CAAAGGAT-GCC-C-CCTG-ATGAGC---TACC-AATACTAC-AC-CTGGTACTCCAG-A--GAGCT-CTC--CC-TCCTTTGCAAAGAGG-GTGAG-G-AGATGA-CAAG-ATT-G-T----TAT---CCT--GA--GTACGTCCAA-TCAACGTTTACTTTTTAA-ACTTTGA-TA-TTTT-ACTT-TAC--AG----TTCCCTCCGT-TT-TGTAT-GG-CAG-AAA---GATTG-AAACAA------------------------CGG-CCAGATTGGACGA-C--------TCAAT-ATACCCCCACCAGACCTGCCACAGACATCGATATGATCGTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCA-CCGATTGGCAAATTG-CGTGGTTAGA-TAAAGGTATACGAGAAAGTAAAACAT---CCCGATTC-AAGAAACACATGAACTG-CATGTAGTTGGT
gi|10 : ATATTAATTGAACAATCGAAGCA--TAGAG-T-GGCGCCA-C--CTA-T-------GCTGCCA-CGACCAAA-ATCTGGCA-----TGTC--C--TG-CTACCTGAACTCTGA-A-TGAAA-AGGCAAATAAGAGTTTACTATTTATTACAAAAAAC---CACAAGCACAT-----ACAAGA-AATACA------------TAAACA----TGATGTG-A--CT------TAAGGGGA-GTTGGCGTTAAGGC--CACATTGTTAg
gi|11 : aatatacatacAA-A--GTGG-CAGCCCAGTCGATTA--A---ACTTTCCCAC-----TG-AGACCGA-AAGGG----CTC--GCCTGAATCTCCCATTACCC-------------TTTTCAAGAGATTGCCTC-CCTA-----------------------------GGTACTCC-G-A--TGACT-CTC--CCCTCCTTTGCAAAGAGGCGTGAGAA-TGATAC-CCAA-ATTAG-TGTAATAT---C----GACTGTAGCTCCAAGTAAACTTTT-CTT
gi|12 : aaTTGACT--TTTT-ACTTATAC--ATAATTTCCTTTCCGTCTTGTGTAT-GA-CAG-AAACGGGGTTA-AAACNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGCCAGATCGGACGA-CCACTTAACTCAATTATAACCCC-T-AGACCTGCCACAGACATCGATATGAT-GTACCTCCACTACCCAactt
gi|13 : --ATTGAACAATCGG---AATTAGAA-TGG----CACC-ACCA--A-TGGTGGA-GCCT-CAATCAAA-A
gi|14 : gcaaaatacaatttagctgaaatta-G----CA-CCACTA-TA-TCGTGAT-GCCA-CGACCAAA-ACCTGGCATGTCCTGTC--C--TGCCTGCCTGAA--C
gi|15 : gcgtg----CACATTGTTACGAAGGATA-CA-ATGGT--TGAAGG-TCCAGAGGGGTA---A---CC-GGA-GTTCC-GACC-GA--A-----GTA-tag
gi|16 : c--ATTGAACAATCGATATAATTAGAGTT-G----CACC-ACTA-CA-TCGTAGT-GCCA-CG-CCGAA-CCCTGG
gi|17 : ta--ATTGAACAATTGAAGTA--TAGAG-T-A-----A-C-GCCA-CC-T-GTGGC-GCCA-
gi|19 : aatataatacatatcatta--ATTGAACAATCGATATAATTAGAG-TGG----CA-C-
gi|2 : attaTTTAACAATC-ATATAATTAGAT-G-G----CATC-ACTAATA-TCGTG-T-GCC--CGACC-AA-ACCTGGCATGCCATGTC--TCTTGCCT-CCTGAA--CCAACA-TA-AC-AGTCCAATCCGAGTTTACAATTTATTACA-GGAAT--TCACAAGAACA------ACAAGA-ATCACGT------------AGACA----TGAAGCG-AATTT------CA--GTGA-GTTGAC-GTATATGGCCACAT-GTTACGAAG-ATAACATATGGT--T-CAGG-TCCA--GGG--A--------C-GGA-G-TAC-CGCC-GA--A-----GTA-----TAA-GGGCA--AACCGG---GC-T--C---GTGTG----AGCAACAG-ACAGCGG--ATCCCAGCC--TTGTCA-----CTGTC-GC-----TG-GGAC-GA-AAGT-----C-C--GACCG--TCTGC-AT-ACCCC-----------GTTTTCAAAGGATCGCCTC-CCTGGATGAGCG--TACCGAATACTAC-AC--TGGTACTCCAGGA--GAGCT-CTC--TC-TCCTTTGCAA-GAGG-GTGAGAG-AGATAC-CGAGAATT-G------TAT---CCT--GA--GTA--CTCAA-TCAACGTTTACTTT---A-ACTTTAG-----TTT-ACTT-TAC--------TAACCTCCGTC-T-TGTAT-G---AG-AAA-AGGATTG--AACAA------------------------CGGGCCAGATGGAACGA--CACTTTACTCATTCATA---CC-CCAGACCTcac
gi|3 : GTGGC-GCCAATGAC-GATTACCTTGCATGTC--------------TGC-TGAA--CTGA----G-A------CAA---GAGTTTACTATTTATTACA--GAACAAGCACAAGCACACCGTCAATAAGCCAATATATTGAATTGATTTTAGGCGCAGTTGAAGCG-T--TTAGCGGCCT--GGGACGTTGTC-T--AG----CA-ATTGATA---AA-TTA-CA-ATGGTATCGCAGGATCCAAAGGG--GGGTA---CC-GGAAG-TACCGATC-GA-G------GTATA---TGA-GGGCATAA-CCGGT-GGCCT--CAAAGTGTGTAGCAGCGGCAG-A--GCCG-ACTTCCAGCC--TTGTAATGTACTTTTG-AC-----TGAGGACGGA-AAGTG----C-CTAGCTCGA-TCTGC-ATTACCACTAAAAGCAATTGTTTCAAGAGGATTGCTTC-CCTGGATAAGCGCGTACC-ATTACTACTACGCTGGTACTCCAG-AA-GAGCTTCTCGCCCCTCTTTGGCAA-GCGG-GTGAGAG-GGATACACAAG-ATT-GGT----TAT---TCTCTGA--GTAGCCCTAA-TCGACGTTTATT-------ATTTTGG-C--TTTTAAACT-TA---AT----TCCCCTCCGTATTATGTCTAGAGTAGAAAA-AGGATTGCCAAC-A------------------------CGGGATAGATCGGAAGATCCTCTTTACTTCACTATtctctgttaagcaaccaattgcgacaagagaaa
gi|4 : GG-TCCAA-GGG--A---ATATCC-AGT-A-TAC-AACCTGACAA-----GCA-AGTATAACGGGCA--A-ACCGTAGGCCC--A---GTACT----AATA--------------ATCCCAAAC--T-ATTA---ACTTATC-ACCAATTTG-GGATAGG-AAGTGTTTTC-T--AATC-A-TCTGT--TTACCCC-----------GTTTTCCATAGATT---TCACTTG-GTGGTCA--CGTC-TTTTCCAT-------GTACTCCAGCACTAAGCT--TC--GACTCCTGTGTAAAGA-G-GTG-GAGTGGGCAC-CAAA-CCT-G-T----CACTGACTT--GA--GTGACCCCAA-TCAA
gi|5 : acatgcatttgacctcttcaacacgacatattgacagcacaaaattatttttacacatttattgaatgaacctgacaacgtctcacacattgacaacggatttccagagaggagtatacgagtgggcgcattgtaccaaccaaagGG-TCCCGAGGA--AT--A---TTTGGA-A-TACTGACCTGA-GAACCAAGTA-----TAACGGGCAT-A-CCGGT-GGTCTGCC---GTTTA----GGCGCCAGTA--CCGGAAATCTCAAAC---TATTA---ATTTTAC-ACCTGTTTG-GGAaaaccacatataacatgtacc
gi|6 : aagtattgattgcaacattccattttaattatcaacattccctgggagatcagggtacccttgtaccttaaatccatttggcctcaaccataatatgacaaaacatacttttcacatttattgaagaaaccaaccaatgcttcacaaatcaaacaataagcaaatcaacaattgaattggaattaaatgggcgccttctataatcccaagAA-TGAACCTTTACTTTTTAA-ACTTTAA-TATTTTT-ACTT-TAATAAT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-GGG-TTG-AAACAA------------------------CAGGCAAAGTAGGACAA-CCACTTTACTCAATTATACCCC---CAGACCTGCCACAGACTTCGATATGAT-GTTCCTCCACTACCCACAGAGCTG--AAAACCCACACTGACTCCCATACAA-TGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGTatagcaagacatctcaatttgccg
gi|8 : TTGCATAGAGG-ATGAGAG-GACTAC-CAAG-ATT-G-T----TAT---CCT--GA--GTAGCCCCAA-TCAACGTTTACTAAT-ACTACTTTGA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAG-ATGATTG-AAACAA------------------------CGGGTCAGATCGGACGA-CCAC--TACTCAATTAT-CCCCC-C--GACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGAAGCCGAAAAAACCCACACTGAATCCCACCCGATTGGCAAATTGCCGTGGTTA
gi|9 : -A--GAGCT-CTC--CCCTCCTTTGCAAAGAGG-ATGAGAG-GGATAC-CGAG-ATT-G-T----TAT---CCT--AA--ATAGCCCCAA-TCAACGTGTACT-------ACTTTCA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAACTATTCCCCG-CCATACCTGCCACAGACATCGATATGA-------TCCACT------GGAGCCG-AAACACCCACACTGACTTCCACCCGATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAGTTAATTGAACATTCCATTTGAATTACAACAATCCTCTAGTGGTCAGGTACCCTGAACTATGACCCAACGTGAGCCTCAACCAAAACATAACAAAATACAACTTACAAGTTTACACATTTATTGAAGAAACCAGCCAATGCTTCACATAATAAAACAAAAGCAAAAACAATCAGGGTAATTGGAATTTAATGGCCTGCATTGTATCATCTGGCAGGGGTCCCGAGTGGAATATTCCGGAATAAGCCCGACCTGGACCACAAGTATAAGACGATGGGGCAAA
Unaligned ( gi|18 ): ATTTTACACCTATCTGGGATAGGAAGAGATCTCAAATTGTCCGT
Alignments
lowQualScore : 11111111111 1111 3333333333 33333333333333 11 222 444444 1 666666666666 2222 4444444444444444 1 3333333333 1 1 1 11 3333333333 1111 1 1 3333333333333333 2 1 222222 3333333333333333333333 2222222222 33333 111111111 444444444444 333333333333333333333333 1111 1 1111 111 4444444 1111 333333333 1 555555555555555555555555 1111 11 1 1 222 1 1 11
lowQualScore : 99 0 5 5 55555555555 55 5555 4 66 55 4 5 6666666666 5 3 33333333333333 3 888 1 55 333 1 444444 0 111111111111 1111 1 1111111111111111 0 0 0000000000 0 22 0 0 0 33 2 6 77 1111111111 6 6666 3 3 7777777777777777 0 1 8 6 888888 9999999999999999999999 8 55 6666666666 1 88 33333 6 8 8 999999999 0 88 88 0 111111111111 3 3 0 3 444444444444444444444444 88 3333 6 99 5 5 1 1 5 2 5 1 2222 777 77 3 5 5555555 9999 5 0 5 000000000 0 1 1 5 55 5 88 0 77 555555555555555555555555 5 1 0 66 2222 88 1 0 33 6 3 6 1 5 1 1 5 111 5 1 5 88
lowQualScore : .. . . . ........... .. .... . .. .. . . .......... . . .............. . ... . .. ... . ...... . ............ .... . ................ . . .......... . .. . . . .. . . .. .......... . .... . . ................ . . . . ...... ...................... . .. .......... . .. ..... . . . ......... . .. .. . ............ . . . . ........................ .. .... . .. . . . . . . . . .... ... .. . . ....... .... . . . ......... . . . . .. . .. . .. ........................ . . . .. .... .. . . .. . . . . . . . . ... . . . ..
lowQualScore : 22 7 4 0 00000000000 11 1111 3 11 44 0 7 8888888888 0 2 00000000000000 0 222 0 88 000 0 000000 0 888888888888 2222 0 0000000000000000 0 2 2222222222 8 88 0 0 0 88 5 7 33 8888888888 7 3333 3 3 6666666666666666 0 2 0 0 000000 6666666666666666666666 0 22 7777777777 0 33 33333 7 8 0 222222222 6 88 88 8 222222222222 8 8 8 8 666666666666666666666666 88 5555 7 22 0 7 7 4 7 7 7 4 1111 999 99 0 0 2222222 4444 7 7 7 999999999 7 4 3 7 99 7 00 1 11 000000000000000000000000 7 4 1 00 7777 88 0 8 22 5 2 7 0 5 0 0 5 000 5 0 5 00
consensus : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAACC--GACA-TGAA-A-GTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAACGGGCANA-CCGGTGGCCT--C---GTGTG----AGCG-CAG-A--GCGG--A-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATGA--GCGTACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
Reference ( family-2669 ) : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAACC--GACA-TGAA-A-GTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAACGGGCATA-CCGGTGGCCT--C---GTGTG----AGCG-CAG-A--GCGG--A-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATGA--GCGTACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
gi|1 : ATAT--ATTGAACAATCTATATAAT-AGAG-T-G----CA-C-ACTA-TAGTCGTGGT-GCCA-CGACCGAA-ACCTGGCATGTCATGTCTCC--TGCCTGCCTGAACC--AACAATGAACA-GTCCAATCCGAGTTTACAATTTATTACAAGGAAT--TCACAAGAACA------ACAAGA-GATACATCA--------TTAGACA----TGATGCGTA--TT------CA--GGTA-GTTGGC-TTATG----CACATTGTTACAAGG-ATA-CA-ATGGT--TGCAG--TC--AAGGG--A---A---CC-GG----TAC-GACC-GA-GA-----GTA-A---TAA-GGGCA-A-CCGGTGGCCT--CT--GTGTG----AGCA-CAA-A--GCGGC-A-TCCCAGC-TTGTC-----A----CTTGTC--C-----TG-GGACCGAGAAGTG----C-C--GACCGA-TCTGC-ACTAACCT-----------GTTT-CAAAGGAT-GCC-CCCTG-ATGA--GC-TACC-AATACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCC-TCCTTTGCAAAGAGG-GTGAG-GAGATGA-CAAG-ATT-GT----TAT---CCTGA--GTACGTCCAA-TCAACGTTTACTTTTTAA-ACTTTGA-TA-TTTT-ACTT-TAC--AG----TTCCCTCCGT-TT-TGTAT-GG-CAG-AAA---GATTG-AAACAA------------------------CGG-CCAGATTGGACGA-C--------TCAAT-ATACCCCCACCAGACCTGCCACAGACATCGATATGATCGTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCA-CCGATTGGCAAATTG-CGTGGTTAGA-TAAAGGTATACGAGAAAGTAAAACAT---CCCGATTC-AAGAAACACATGAACTG-CATGTAGTTGGT
gi|10 : ATATTAATTGAACAATCGAAGCA--TAGAG-T-GGCGCCA-C--CTA-T-------GCTGCCA-CGACCAAA-ATCTGGCATGTC-------C--TGC-TACCTGAACTCTGA-A-TGAA-AAGGCAAATAAGAGTTTACTATTTATTACAAAAAAC---CACAAGCACAT-----ACAAGA-AATACA------------TAAACA----TGATGTG-A--CT------TAAGGGGA-GTTGGCGTTAAGGC--CACATTGTTAg
gi|11 : aatatacatacCAGCCCAGTCGATTAA---ACTTTCCCAC-----TG-AGACCGA-AAGGG----CTC--GCCTGAATCTCCCATTACCC-------------TTTTCAAGAGATTGCCTCCCTAG-----------------------------GTACTCC--G-A--TGAC-TCT--CCCCTCCTTTGCAAAGAGGCGTGAGAATGATAC-CCAA-ATTAGTGTAATAT---C--GACTGTAGCTCCAAGTAAACTTTT-CTT
gi|12 : aaaaagtggTTGACT--TTTT-ACTTATAC--ATAATTTCCTTTCCGTCTTGTGTAT-GA-CAG-AAACGGGGTTA-AAACNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGCCAGATCGGACGA-CCACTTAACTCAATTATAACCCC-T-AGACCTGCCACAGACATCGATATGAT-GTACCTCCACTACCCAactt
gi|13 : --ATTGAACAATCGG---AATTAGAA-TGG----CACC-ACCA--A-TGGTGGA-GCCT-CAATCAAA-A
gi|14 : gcaaaatacaatttagctgaaatta-G----CA-CCACTA-TA-TCGTGAT-GCCA-CGACCAAA-ACCTGGCATGTCCTGTC--C--TGCCTGCCTGAAC
gi|15 : gcgtg----CACATTGTTACGAAGGATA-CA-ATGGT--TGAAGG-TCCAGAGGGGTA---A---CC-GGA-GTTCC-GACC-GA--A-----GTA-tag
gi|16 : c--ATTGAACAATCGATATAATTAGAGTT-G----CACC-ACTA-CA-TCGTAGT-GCCA-CG-CCGAA-CCCTGG
gi|17 : ta--ATTGAACAATTGAAGTA--TAGAG-T-A-----A-C-GCCA-CC-T-GTGGC-GCCA-
gi|19 : aatataatacatatcatta--ATTGAACAATCGATATAATTAGAG-TGG----CA-C-
gi|2 : attaTTTAACAATC-ATATAATTAGAT-G-G----CATC-ACTAATA-TCGTG-T-GCC--CGACC-AA-ACCTGGCATGCCATGTC--TCTTGCCT-CCTGAACC--AACA-TAAC-A-GTCCAATCCGAGTTTACAATTTATTACA-GGAAT--TCACAAGAACA------ACAAGA-ATCACGT------------AGACA----TGAAGCG-AATTT------CA--GTGA-GTTGAC-GTATATGGCCACAT-GTTACGAAG-ATAACATATGGT--T-CAGG-TCCA--GGG--A--------C-GGA-G-TAC-CGCC-GA--A-----GTA-----TAA-GGGCAAA-CCGG--GC-T--C---GTGTG----AGCAACAG-ACAGCGG--A-TCCCAGCCTTGTC-----A-----CTGTC-GC-----TG-GGAC-GA-AAGT-----C-C--GACCG--TCTGC-AT-ACCCC-----------GTTTTCAAAGGATCGCCTCCCTGGATGA--GCGTACCGAATACTAC-A--CTGGTACTCCAGG-A--GAGC-TCT---CTCTCCTTTGC-AAGAGG-GTGAGAGAGATAC-CGAGAATT-G-----TAT---CCTGA--GTA--CTCAA-TCAACGTTTACTTT---A-ACTTTAG-----TTT-ACTT-TAC--------TAACCTCCGTC-T-TGTAT-G---AG-AAA-AGGATTG--AACAA------------------------CGGGCCAGATGGAACGA--CACTTTACTCATTCATA---CC-CCAGACCTcac
gi|3 : GTGGC-GCCAATGAC-GATTACCTTGCATGTC--------------TGC-TGAACT--GA----GA-------CAA---GAGTTTACTATTTATTACA--GAACAAGCACAAGCACACCGTCAATAAGCCAATATATTGAATTGATTTTAGGCGCAGTTGAAGCG-T--TTAGCGGCCT--GGGACGTTGTC-T--AG----CA-ATTGATA---AA-TTA-CA-ATGGTATCGCAGGATCCAAAGGG--GGGTA---CC-GGAAG-TACCGATC-GA-G------GTATA---TGA-GGGCATAACCGGTGGCCT--CAAAGTGTGTAGCAGCGGCAG-A--GCCG--ACTTCCAGCCTTGTA-----ATGTACTTTTG-AC-----TGAGGACGGA-AAGTG----C-CTAGCTCGA-TCTGC-ATTACCACTAAAAGCAATTGTTTCAAGAGGATTGCTTCCCTGGATAAGCGCGTACC-ATTACTACTACGCTGGTACTCCA-GAA--GAGCTTCTCGCCCCTCTTTGGC-AAGCGG-GTGAGAGGGATACACAAG-ATTGGT----TATTC-TCTGA--GTAGCCCTAA-TCGACGTTTATT-------ATTTTGG-C--TTTTAAACT-TA---AT----TCCCCTCCGTATTATGTCTAGAGTAGAAAA-AGGATTGCCAAC-A------------------------CGGGATAGATCGGAAGATCCTCTTTACTTCACTATtctctgttaagcaaccaattgcgacaagagaaa
gi|4 : GG-TCCAA-GGG--A---ATATCC-AGT-A-TAC-AACCTGACAA-----GCA-AGTATAACGGGCAAA-CCGTAGGCCC--A---GTACT----A-----AT-A--------A-TCCCAAACT-ATT-----A---ACTTATC-ACCAATTTG-GGATAGG-AAGTGTTTTC-T--AATC-A-TCTGT--TTACCCC-----------GTTTTCCATAGATT---TCACTTGGTGG--TCACGTC-TTTTCCAT-------GTACTCCA-GCACTAAGC-T-T--CGACTCCTGTGTAAAGAGG-TGGAGTGGG-CAC-CAAA-CCT-GT----CACTGACTTGA--GTGACCCCAA-TCAA
gi|5 : acatgcatttgacctcttcaacacgacatattgacagcacaaaattatttttacacatttattgaatgaacctgacaacgtctcacacattgacaacggatttccagagaggagtatacgagtgggcgcattgtaccaaccaaagGG-TCCCGAGGA--AT--A---TTTGGA-A-TACTGACCTGA-GAACCAAGTA-----TAACGGGCATA-CCGGTGGTCTGCC---GTTTA----GGCGCCAGTA--CCGGAAA-TCTCAAAC-TATT-----A---ATTTTAC-ACCTGTTTG-GGAaaaccacatataacatgtacc
gi|6 : aagtattgattgcaacattccattttaattatcaacattccctgggagatcagggtacccttgtaccttaaatccatttggcctcaaccataatatgacaaaacatacttttcacatttattgaagaaaccaaccaatgcttcacaaatcaaacaataagcaaatcaacaattgaattggaattaaatgggcgccttctataatcccaagAA-TGAACCTTTACTTTTTAA-ACTTTAA-TATTTTT-ACTT-TAATAAT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-GGG-TTG-AAACAA------------------------CAGGCAAAGTAGGACAA-CCACTTTACTCAATTATACCCC---CAGACCTGCCACAGACTTCGATATGAT-GTTCCTCCACTACCCACAGAGCTG--AAAACCCACACTGACTCCCATACAA-TGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGTatagcaagacatctcaatttgccg
gi|8 : TTGCATAGAGG-ATGAGAGGACTAC-CAAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTAAT-ACTACTTTGA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAG-ATGATTG-AAACAA------------------------CGGGTCAGATCGGACGA-CCAC--TACTCAATTAT-CCCCC-C--GACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGAAGCCGAAAAAACCCACACTGAATCCCACCCGATTGGCAAATTGCCGTGGTTA
gi|9 : -A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-ATGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTAA--ATAGCCCCAA-TCAACGTGTACT-------ACTTTCA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAACTATTCCCCG-CCATACCTGCCACAGACATCGATATGA-------TCCACT------GGAGCCG-AAACACCCACACTGACTTCCACCCGATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAGTTAATTGAACATTCCATTTGAATTACAACAATCCTCTAGTGGTCAGGTACCCTGAACTATGACCCAACGTGAGCCTCAACCAAAACATAACAAAATACAACTTACAAGTTTACACATTTATTGAAGAAACCAGCCAATGCTTCACATAATAAAACAAAAGCAAAAACAATCAGGGTAATTGGAATTTAATGGCCTGCATTGTATCATCTGGCAGGGGTCCCGAGTGGAATATTCCGGAATAAGCCCGACCTGGACCACAAGTATAAGACGATGGGGCAAA
Unaligned ( gi|18 ): ATTTTACACCTATCTGGGATAGGAAGAGATCTCAAATTGTCCGT
Alignments
lowQualScore : 11111111111 1111 3333333333 33333333333333 11 222 444444 1 666666666666 2222 4444444444444444 1 3333333333 1 1 1 11 3333333333 1111 1 1 3333333333333333 2 222222 3333333333333333333333 2222222222 33333 111111111 444444444444 333333333333333333333333 1111 1 1111 111 4444444 1111 333333333 1 555555555555555555555555 1111 11 1 1 222 1 1 11
lowQualScore : 99 0 5 5 55555555555 55 5555 4 66 55 4 5 6666666666 5 3 33333333333333 3 888 1 55 333 1 444444 0 111111111111 1111 1 1111111111111111 0 0 0000000000 0 22 0 0 0 33 2 6 77 1111111111 6 6666 3 3 7777777777777777 0 8 8 6 888888 9999999999999999999999 8 55 6666666666 1 88 33333 6 8 8 999999999 0 88 88 0 111111111111 3 3 0 3 444444444444444444444444 88 3333 6 99 5 5 1 1 5 2 5 1 2222 777 77 3 5 5555555 9999 5 0 5 000000000 0 1 1 5 55 5 88 0 77 555555555555555555555555 5 1 0 66 2222 88 1 0 33 6 3 6 1 5 1 1 5 111 5 1 5 88
lowQualScore : .. . . . ........... .. .... . .. .. . . .......... . . .............. . ... . .. ... . ...... . ............ .... . ................ . . .......... . .. . . . .. . . .. .......... . .... . . ................ . . . . ...... ...................... . .. .......... . .. ..... . . . ......... . .. .. . ............ . . . . ........................ .. .... . .. . . . . . . . . .... ... .. . . ....... .... . . . ......... . . . . .. . .. . .. ........................ . . . .. .... .. . . .. . . . . . . . . ... . . . ..
lowQualScore : 22 7 4 0 00000000000 11 1111 3 11 44 0 7 8888888888 0 2 00000000000000 0 222 0 88 000 0 000000 0 888888888888 2222 0 0000000000000000 0 2 2222222222 8 88 0 0 0 88 5 7 33 8888888888 7 3333 3 3 6666666666666666 0 8 0 0 000000 6666666666666666666666 0 22 7777777777 0 33 33333 7 8 0 222222222 6 88 88 8 222222222222 8 8 8 8 666666666666666666666666 88 5555 7 22 0 7 7 4 7 7 7 4 1111 999 99 0 0 2222222 4444 7 7 7 999999999 7 4 3 7 99 7 00 1 11 000000000000000000000000 7 4 1 00 7777 88 0 8 22 5 2 7 0 5 0 0 5 000 5 0 5 00
consensus : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAACC--GACA-TGAA-A-GTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAACGGGCANA-CCGGTGGCCT--C---GTGTG----AGCG-CAG-A--GCGG--A-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATGA--GCGTACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
Reference ( family-2669 ) : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAACC--GACA-TGAA-A-GTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAACGGGCANA-CCGGTGGCCT--C---GTGTG----AGCG-CAG-A--GCGG--A-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATGA--GCGTACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
gi|1 : ATAT--ATTGAACAATCTATATAAT-AGAG-T-G----CA-C-ACTA-TAGTCGTGGT-GCCA-CGACCGAA-ACCTGGCATGTCATGTCTCC--TGCCTGCCTGAACC--AACAATGAACA-GTCCAATCCGAGTTTACAATTTATTACAAGGAAT--TCACAAGAACA------ACAAGA-GATACATCA--------TTAGACA----TGATGCGTA--TT------CA--GGTA-GTTGGC-TTATG----CACATTGTTACAAGG-ATA-CA-ATGGT--TGCAG--TC--AAGGG--A---A---CC-GG----TAC-GACC-GA-GA-----GTA-A---TAA-GGGCA-A-CCGGTGGCCT--CT--GTGTG----AGCA-CAA-A--GCGGC-A-TCCCAGC-TTGTC-----A----CTTGTC--C-----TG-GGACCGAGAAGTG----C-C--GACCGA-TCTGC-ACTAACCT-----------GTTT-CAAAGGAT-GCC-CCCTG-ATGA--GC-TACC-AATACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCC-TCCTTTGCAAAGAGG-GTGAG-GAGATGA-CAAG-ATT-GT----TAT---CCTGA--GTACGTCCAA-TCAACGTTTACTTTTTAA-ACTTTGA-TA-TTTT-ACTT-TAC--AG----TTCCCTCCGT-TT-TGTAT-GG-CAG-AAA---GATTG-AAACAA------------------------CGG-CCAGATTGGACGA-C--------TCAAT-ATACCCCCACCAGACCTGCCACAGACATCGATATGATCGTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCA-CCGATTGGCAAATTG-CGTGGTTAGA-TAAAGGTATACGAGAAAGTAAAACAT---CCCGATTC-AAGAAACACATGAACTG-CATGTAGTTGGT
gi|10 : ATATTAATTGAACAATCGAAGCA--TAGAG-T-GGCGCCA-C--CTA-T-------GCTGCCA-CGACCAAA-ATCTGGCATGTC-------C--TGC-TACCTGAACTCTGA-A-TGAA-AAGGCAAATAAGAGTTTACTATTTATTACAAAAAAC---CACAAGCACAT-----ACAAGA-AATACA------------TAAACA----TGATGTG-A--CT------TAAGGGGA-GTTGGCGTTAAGGC--CACATTGTTAg
gi|11 : aatatacatacCAGCCCAGTCGATTAA---ACTTTCCCAC-----TG-AGACCGA-AAGGG----CTC--GCCTGAATCTCCCATTACCC-------------TTTTCAAGAGATTGCCTCCCTAG-----------------------------GTACTCC--G-A--TGAC-TCT--CCCCTCCTTTGCAAAGAGGCGTGAGAATGATAC-CCAA-ATTAGTGTAATAT---C--GACTGTAGCTCCAAGTAAACTTTT-CTT
gi|12 : aaaaagtggTTGACT--TTTT-ACTTATAC--ATAATTTCCTTTCCGTCTTGTGTAT-GA-CAG-AAACGGGGTTA-AAACNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGCCAGATCGGACGA-CCACTTAACTCAATTATAACCCC-T-AGACCTGCCACAGACATCGATATGAT-GTACCTCCACTACCCAactt
gi|13 : --ATTGAACAATCGG---AATTAGAA-TGG----CACC-ACCA--A-TGGTGGA-GCCT-CAATCAAA-A
gi|14 : gcaaaatacaatttagctgaaatta-G----CA-CCACTA-TA-TCGTGAT-GCCA-CGACCAAA-ACCTGGCATGTCCTGTC--C--TGCCTGCCTGAAC
gi|15 : gcgtg----CACATTGTTACGAAGGATA-CA-ATGGT--TGAAGG-TCCAGAGGGGTA---A---CC-GGA-GTTCC-GACC-GA--A-----GTA-tag
gi|16 : c--ATTGAACAATCGATATAATTAGAGTT-G----CACC-ACTA-CA-TCGTAGT-GCCA-CG-CCGAA-CCCTGG
gi|17 : ta--ATTGAACAATTGAAGTA--TAGAG-T-A-----A-C-GCCA-CC-T-GTGGC-GCCA-
gi|19 : aatataatacatatcatta--ATTGAACAATCGATATAATTAGAG-TGG----CA-C-
gi|2 : attaTTTAACAATC-ATATAATTAGAT-G-G----CATC-ACTAATA-TCGTG-T-GCC--CGACC-AA-ACCTGGCATGCCATGTC--TCTTGCCT-CCTGAACC--AACA-TAAC-A-GTCCAATCCGAGTTTACAATTTATTACA-GGAAT--TCACAAGAACA------ACAAGA-ATCACGT------------AGACA----TGAAGCG-AATTT------CA--GTGA-GTTGAC-GTATATGGCCACAT-GTTACGAAG-ATAACATATGGT--T-CAGG-TCCA--GGG--A--------C-GGA-G-TAC-CGCC-GA--A-----GTA-----TAA-GGGCAAA-CCGG--GC-T--C---GTGTG----AGCAACAG-ACAGCGG--A-TCCCAGCCTTGTC-----A-----CTGTC-GC-----TG-GGAC-GA-AAGT-----C-C--GACCG--TCTGC-AT-ACCCC-----------GTTTTCAAAGGATCGCCTCCCTGGATGA--GCGTACCGAATACTAC-A--CTGGTACTCCAGG-A--GAGC-TCT---CTCTCCTTTGC-AAGAGG-GTGAGAGAGATAC-CGAGAATT-G-----TAT---CCTGA--GTA--CTCAA-TCAACGTTTACTTT---A-ACTTTAG-----TTT-ACTT-TAC--------TAACCTCCGTC-T-TGTAT-G---AG-AAA-AGGATTG--AACAA------------------------CGGGCCAGATGGAACGA--CACTTTACTCATTCATA---CC-CCAGACCTcac
gi|3 : GTGGC-GCCAATGAC-GATTACCTTGCATGTC--------------TGC-TGAACT--GA----GA-------CAA---GAGTTTACTATTTATTACA--GAACAAGCACAAGCACACCGTCAATAAGCCAATATATTGAATTGATTTTAGGCGCAGTTGAAGCG-T--TTAGCGGCCT--GGGACGTTGTC-T--AG----CA-ATTGATA---AA-TTA-CA-ATGGTATCGCAGGATCCAAAGGG--GGGTA---CC-GGAAG-TACCGATC-GA-G------GTATA---TGA-GGGCATAACCGGTGGCCT--CAAAGTGTGTAGCAGCGGCAG-A--GCCG--ACTTCCAGCCTTGTA-----ATGTACTTTTG-AC-----TGAGGACGGA-AAGTG----C-CTAGCTCGA-TCTGC-ATTACCACTAAAAGCAATTGTTTCAAGAGGATTGCTTCCCTGGATAAGCGCGTACC-ATTACTACTACGCTGGTACTCCA-GAA--GAGCTTCTCGCCCCTCTTTGGC-AAGCGG-GTGAGAGGGATACACAAG-ATTGGT----TATTC-TCTGA--GTAGCCCTAA-TCGACGTTTATT-------ATTTTGG-C--TTTTAAACT-TA---AT----TCCCCTCCGTATTATGTCTAGAGTAGAAAA-AGGATTGCCAAC-A------------------------CGGGATAGATCGGAAGATCCTCTTTACTTCACTATtctctgttaagcaaccaattgcgacaagagaaa
gi|4 : GG-TCCAA-GGG--A---ATATCC-AGT-A-TAC-AACCTGACAA-----GCA-AGTATAACGGGCAAA-CCGTAGGCCC--A---GTACT----A-----AT-A--------A-TCCCAAACT-ATT-----A---ACTTATC-ACCAATTTG-GGATAGG-AAGTGTTTTC-T--AATC-A-TCTGT--TTACCCC-----------GTTTTCCATAGATT---TCACTTGGTGG--TCACGTC-TTTTCCAT-------GTACTCCA-GCACTAAGC-T-T--CGACTCCTGTGTAAAGAGG-TGGAGTGGG-CAC-CAAA-CCT-GT----CACTGACTTGA--GTGACCCCAA-TCAA
gi|5 : acatgcatttgacctcttcaacacgacatattgacagcacaaaattatttttacacatttattgaatgaacctgacaacgtctcacacattgacaacggatttccagagaggagtatacgagtgggcgcattgtaccaaccaaagGG-TCCCGAGGA--AT--A---TTTGGA-A-TACTGACCTGA-GAACCAAGTA-----TAACGGGCATA-CCGGTGGTCTGCC---GTTTA----GGCGCCAGTA--CCGGAAA-TCTCAAAC-TATT-----A---ATTTTAC-ACCTGTTTG-GGAaaaccacatataacatgtacc
gi|6 : aagtattgattgcaacattccattttaattatcaacattccctgggagatcagggtacccttgtaccttaaatccatttggcctcaaccataatatgacaaaacatacttttcacatttattgaagaaaccaaccaatgcttcacaaatcaaacaataagcaaatcaacaattgaattggaattaaatgggcgccttctataatcccaagAA-TGAACCTTTACTTTTTAA-ACTTTAA-TATTTTT-ACTT-TAATAAT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-GGG-TTG-AAACAA------------------------CAGGCAAAGTAGGACAA-CCACTTTACTCAATTATACCCC---CAGACCTGCCACAGACTTCGATATGAT-GTTCCTCCACTACCCACAGAGCTG--AAAACCCACACTGACTCCCATACAA-TGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGTatagcaagacatctcaatttgccg
gi|8 : TTGCATAGAGG-ATGAGAGGACTAC-CAAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTAAT-ACTACTTTGA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAG-ATGATTG-AAACAA------------------------CGGGTCAGATCGGACGA-CCAC--TACTCAATTAT-CCCCC-C--GACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGAAGCCGAAAAAACCCACACTGAATCCCACCCGATTGGCAAATTGCCGTGGTTA
gi|9 : -A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-ATGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTAA--ATAGCCCCAA-TCAACGTGTACT-------ACTTTCA-T--TTTT-AACT-TA---AT----TCCCCTCCGTCTT-TGTCT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAACTATTCCCCG-CCATACCTGCCACAGACATCGATATGA-------TCCACT------GGAGCCG-AAACACCCACACTGACTTCCACCCGATT
blockSeqs : TA A A TGGCGCCA CA ATA G CT AA A T ATGTCTCT C A CTGAATGAAAA G TAA T AA AAG C CCGTCA C TTGAATTGATTT CAGT T TTTAGCGGCCT C GTATATGGC CG G A T AT G A GA GGGTA T AGT C T CAAGCAAGTA C A A T CAAA TAGCAGCGGCAGAGCCG C CA GATTAAA T CA CAATT A C . TTTTCT AA CA CTAAAAGCAATT T T A GCGCGTACCATTACTACTACGCT AG CACT T CG A C A A A C A A GTAA TGA CT G G TTTTAA TAT A A CATAATT G A A AG A CG CC NNNNNNNNNNNNNNNNNNNNNNNT T T AA CCC T A AA T T C C T T A . TTC T A T .
blockSeqs : . T A TGGCAC A TA C A A A . CTGTCC C G AACATAACA T TCC A G T A T . T . A ACTTAAG . GTTAAGGC CG . . . . G . AA AATAT . AAG T T GAACCAAGTA C T . A GCC GGCGCCAGTACCGGAA . TT ATGTA G G CTGTT . G . CCTA A A C T C A GCGTACCGAATACTACACT A AA . . A . A A . G . G . TC . G . AATACT CT . . ATAAT A A . A . A A . . T AC GCC T T A C T C
blockSeqs : . A A TTGCAC A CA C T T A . C . G GAGA . . T . . C . . . . A AATTTCA . TAG . . . . . . . GA GTAA . AG . . GGTATA . A . T C AGCAACAGACAGCGG . TT AA T A . . A . CTC A A C C T G TCACGTCTTTTCCAT A A . . A . A A . A . . . . . A . TTA C . . AT . C . A . A A . . T TC CT T T . C .
blockSeqs : . T A TGGCA G CC C T A G . . . . . A ATA . TA . . AGTA . T . . A AATA . T AA A A . . . . CC . . . T T . . . A . . A . T C . A . . . . . G . . T . . AT . A . A . G A . . T A CC . .
blockSeqs : . T . GGCAT A T . C A G . . . A . AA . . T A T A . . A . . . . A A . A . . . . . G . . T . . AT . C . A . A A . . T C C
blockSeqs : . . TAA . A . T A . . . . A . . G . . . . . . . . . . C . C . . . A . . . .
blockSeqs : C . .
blockSeqCons : TGGCAC***** CA** C********* GGTA****** AA** GCAAGTA********* C***** AGCGCGGCACG*********** AA******** A* CC******* CGTCCAT***************** TA***** T*** ATT****** A* CC** T*
originalCons : ATAT--ATTGAACAATCGATATAATTAGAG-T-G----CA-C-ACTA-TA-TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCATGTC--C--TGCCTGCCTGAACC--GACA-TGAA-A-GTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGG--A---A---CC-GGA-G-TAC-GACC-GA-GA-----GTA-A---TAACGGGCANA-CCGGTGGCCT--C---GTGTG----AGCG-CAG-A--GCGG--A-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATGA--GCGTACC-ANTACTAC-AC-CTGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTTTT-AA-ACTTTGA-T--TTTT-ACCT-TAC--AT----TCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCC-CCAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
finalCons : ATAT--ATTGAACAATCGATATAATTAGAGTGGCAC-----C-ACTACA--TCGTGGC-GCCA-CGACCGAA-ACCTGGCATGTCC---------TGCCTGCCTGAACC--GACA-TGAA-A-GTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAGA-AATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-ATA-CA-ATGGT--TGCAGG-TCCAAAGGGGGTA------CC-GGAA--TAC-GACC-GAGCAAGTA---------TAACGGGCANA-CCGGTGGCCTC-----GTGTGAGCGCGGCACG-----------A-TCCCAGCCTTGTCAA--------CTTNTCA-C-----TG-GGACNGA-AAGTGCC-------GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATGACGTCCAT-----------------GGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTACTTA-----ACTTTGAT---TTTT-ACCT-TAATT------TCCCCTCCGTCTT-TGTAT-GA-CAG-AAAA-GGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCCCC--AGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAGTTAATTGAACATTCCATTTGAATTACAACAATCCTCTAGTGGTCAGGTACCCTGAACTATGACCCAACGTGAGCCTCAACCAAAACATAACAAAATACAACTTACAAGTTTACACATTTATTGAAGAAACCAGCCAATGCTTCACATAATAAAACAAAAGCAAAAACAATCAGGGTAATTGGAATTTAATGGCCTGCATTGTATCATCTGGCAGGGGTCCCGAGTGGAATATTCCGGAATAAGCCCGACCTGGACCACAAGTATAAGACGATGGGGCAAA
Unaligned ( gi|18 ): ATTTTACACCTATCTGGGATAGGAAGAGATCTCAAATTGTCCGT
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 2222 333333333333333333333333 11 333333333 222 444444 1 666666666666 2222 4444444444444444 1 3333333333 1 1 1 11 1111 22222 111 44444444444 111 11 222222 999999999999999999999999 2222222222 33333 111111111 111 444444444444 77777777777777777777777777777777777 1111 1 1111 111 4444444444 111111 11111 11111 1 555555555555555555555555 1111 11 1 1 222 1 1 11
lowQualScore : 99 0 5 5 55 4444 44 55 4 5 777777777777777777777777 5 3 11 333333333 3 888 1 666 333 1 444444 0 777777777777 1111 1 1111111111111111 0 0 0000000000 0 0 0 0 0 0 33 2 6 3333 77777 6 666 6 6 55555555555 6 777 66 6 888888 8 000000000000000000000000 55 6666666666 1 88 33333 6 8 8 999999999 0 88 222 111111111111 3 3 0 44444444444444444444444444444444444 88 3333 6 99 5 5 1 1 5 2 5 1 2222 777 77 3 5 5 9999999999 5 444444 5 44 44444 5 99999 0 1 1 5 55 5 88 0 77 555555555555555555555555 5 33 0 66 4444 88 1 0 33 6 3 6 1 5 1 1 5 111 5 1 5 88
lowQualScore : .. . . . .. .... .. .. . . ........................ . . .. ......... . ... . ... ... . ...... . ............ .... . ................ . . .......... . . . . . . .. . . .... ..... . ... . . ........... . ... .. . ...... . ........................ .. .......... . .. ..... . . . ......... . .. ... ............ . . . ................................... .. .... . .. . . . . . . . . .... ... .. . . . .......... . ...... . .. ..... . ..... . . . . .. . .. . .. ........................ . .. . .. .... .. . . .. . . . . . . . . ... . . . ..
lowQualScore : 22 7 4 0 11 0000 55 44 0 7 222222222222222222222222 0 2 00 222222222 0 222 0 888 000 0 000000 0 888888888888 2222 0 0000000000000000 0 2 2222222222 8 8 2 0 0 0 88 5 7 0000 55555 7 888 7 7 88888888888 7 000 88 0 000000 0 222222222222222222222222 22 7777777777 0 33 33333 7 8 0 222222222 6 88 666 222222222222 8 8 8 22222222222222222222222222222222222 88 5555 7 22 0 7 7 4 7 7 7 4 1111 999 99 0 0 7 9999999999 7 666666 7 77 33333 7 11111 7 4 3 7 99 7 00 1 11 000000000000000000000000 7 00 1 00 2222 88 0 8 22 5 2 7 0 5 0 0 5 000 5 0 5 00
consensus : ATAT--ATTGAACAATCGATATAATTAGAGTGGCACCAC-TA-TA-TCGTGGCGCCA-CGACCGAA-ACCTGGCA-----TG-------TC-------CTGCCTGCCTGAA--CCGACA-TG-AA-AGTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAG-AAATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-AT-ACA-ATGG--TTGCAGG-TCCAAA-GGGA-TA-CC-GGAA-TA-C-GACC----GAG----AAGTA-TA-ACGGGCA-AACCGGTGGCCT--C---GTGTG-AGCA--A-G-CGGCA----C----GA-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATG---AG--CGTAC-----CAATACTAC-AC--TGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTAC-T--T----A--ACTTTGA-T--T---TTT-ACCT-----TA-AT--TTCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCC-C--CAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
Reference ( family-2669 ) : ATAT--ATTGAACAATCGATATAATTAGAGTGGCACCAC-TA-CA-TCGTGGCGCCA-CGACCGAA-ACCTGGCA-----TG-------TC-------CTGCCTGCCTGAA--CCGACA-TG-AA-AGTCCAATCCGAGTTTACNATTTATTACAAGGAAC--TCACAAGNACAC-----ACAAG-AAATACATCG--------TTAGACA----TGANGCG-A--TT------CA--GGGA-GTTGGC-TTANG----CACATTGTTACGAAG-AT-ACA-ATGG--TTGCAGG-TCCAAA-GGGGGTA-CC-GGAA-TA-C-GACC----GAG---CAAGTA-TA-ACGGGCA-NACCGGTGGCCT--C---GTGTG-AGC-----G-CGGCA----C----GA-TCCCAGCCTTGTC-----A---ACTTNTC-AC-----TG-GGACNGA-AAGTG----C-C--GACCGA-TCTGC-ATTACCCC-----------GTTTTCAAAGGATTGCCTCCCTGGATG---A---CGT-C-----CA------------TGGTACTCCA-G-A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-GTGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTAC-T--T----A--ACTTTGA-T--T---TTT-ACCT-----TA-AT--TTCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAATTATACCCC-C--CAGACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCACCCGATTGGCAAATTGCCGTGGTTANATTAAANGTATANGAGAAAGTGAAACATTTCCCCGATTCTAAGAAACACATGAACNGTCGTGTAGTTGGT
gi|1 : ATAT--ATTGAACAATCTATATAAT-AGAGTG-CAC-AC-TA-TAGTCGTGGTGCCA-CGACCGAA-ACCTGGCA-----TG-------TCATGTCTCCTGCCTGCCTGAA--CCAACAATG-AACAGTCCAATCCGAGTTTACAATTTATTACAAGGAAT--TCACAAGAACA------ACAAG-AGATACATCA--------TTAGACA----TGATGCGTA--TT------CA--GGTA-GTTGGC-TTATG----CACATTGTTACAAGG-AT-ACA-ATGG--TTGCAG--TC--AA-GGGA--A-CC-GG---TA-C-GACC----GAG-----AGTAATA-A-GGGCA--ACCGGTGGCCT--CT--GTGTG-AGCACAAAG-CGGCA------------TCCCAGC-TTGTC-----A----CTTGTC--C-----TG-GGACCGAGAAGTG----C-C--GACCGA-TCTGC-ACTAACCT-----------GTTT-CAAAGGAT-GCC-CCCTG-ATG---A---GCTAC-----CAATACTACACC--TGGTACTCCA-G-A--GAGC-TCT--CCC-TCCTTTGCAAAGAGG-GTGAG-GAGATGA-CAAG-ATT-GT----TAT---CCTGA--GTACGTCCAA-TCAACGTTTAC-T--TTTTAA--ACTTTGA-TA-T---TTT-ACTT-----TACAG--TTCCC-TCCGT-TT-TGTAT-GG-CAG-AAA---GATTG-AAACAA------------------------CGG-CCAGATTGGACGA-C--------TCAAT-ATACCCC-CACCAGACCTGCCACAGACATCGATATGATCGTTCCTCCACTACCCACGGAGCCG-AAAAACCCACACTGACTCCCA-CCGATTGGCAAATTG-CGTGGTTAGA-TAAAGGTATACGAGAAAGTAAAACAT---CCCGATTC-AAGAAACACATGAACTG-CATGTAGTTGGT
gi|10 : ATATTAATTGAACAATCGAAGCA--TAGAGTGGCGCCACCTA-------TGCTGCCA-CGACCAAA-ATCTGGCA-----TG-------TC-------CTG-CTACCTGAACTCTGA-A-TGAAA-AGGCAAATAAGAGTTTACTATTTATTACAAAAAAC---CACAAGCACAT-----ACAAG-AAATACA------------TAAACA----TGATGTG-A--CT------TAAGGGGA-GTTGGCGTTAAGGC--CACATTGTTAg
gi|11 : aatatacatacCAGCCCAGTCGATTAA---ACTTTCCCAC-----TG-AGACCGA-AAGGG----CTC--GCCTGAATCTCCCATTACCC-------------TTTTCAAGAGATTGCCTCCCTA------------------------------------GGTACTCC--G-A--TGAC-TCT--CCCCTCCTTTGCAAAGAGGCGTGAGAATGATAC-CCAA-ATTAGTGTAATAT---C--GACTGTAGCTCCAAGTAAACTTTT-C-T--T-------ACTT
gi|12 : aaaaagtggTTGACT--T---TTT-ACTTATACATA-AT--TTCCTTTCCGTCTTGTGTAT-GA-CAG-AAACGGGGTTA-AAACNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGCCAGATCGGACGA-CCACTTAACTCAATTATAACCC-C--TAGACCTGCCACAGACATCGATATGAT-GTACCTCCACTACCCA
gi|13 : --ATTGAACAATCGG---AATTAGAATGGCACCAC-CA--A-TGGTGGAGCCT-CAATCAAA-A
gi|14 : gcaaaatacaatttagctgaaattaGTGGCACCAC-TA-TA-TCGTGATGCCA-CGACCAAA-ACCTGGCATGTCCTG-------TC-------CTGCCTGCCTGAA--C
gi|15 : gc----CACATTGTTACGAAGGAT-ACA-ATGG--TTGAAGG-TCCAGA-GGGGTAA-CC-GGAGTTC-C-GACC----G------AAGTA-tag
gi|16 : c--ATTGAACAATCGATATAATTAGAGTTGCACCAC-TA-CA-TCGTAGTGCCA-CG-CCGAA-CCCTGG
gi|17 : ta--ATTGAACAATTGAAGTA--TAGAGTAACGCCAC-------CTGTGGCGCCA-
gi|19 : aatataatacatatcatta--ATTGAACAATCGATATAATTAGAGTGGCACCAC-
gi|2 : attaTTTAACAATC-ATATAATTAGA-TGGCATCAC-TAATA-TCGTG-TGCC--CGACC-AA-ACCTGGCA-----TGCCATGTCTC-------TTGCCT-CCTGAA--CCAACA-TA-AC-AGTCCAATCCGAGTTTACAATTTATTAC-AGGAAT--TCACAAGAACA------ACAAG-AATCACG------------TAGACA----TGAAGCG-AATTT------CA--GTGA-GTTGAC-GTATATGGCCACA-TGTTACGAAG-ATAACATATGG--TT-CAGG-TCC--A-GGGA-----C-GGAG-TA-C-CGCC----G------AAGTA-TA-A-GGGCA-AACCGG-G--CT--C---GTGTG-AGCAACAGA-CAGCG---------GA-TCCCAGCCTTGTC-----A-----CTGTC-GC-----TG-GGAC-GA-AAGT-----C-C--GACCG--TCTGC-A-TACCCC-----------GTTTTCAAAGGATCGCCTCCCTGGATG---AG--CGTAC-----CGAATACTACAC--TGGTACTCCAGG-A--GAGC-TCT---CTCTCCTTTGC-AAGAGG-GTGAGAGAGATAC-CGAGAATT-G-----TAT---CCTGA--GTA--CTCAA-TCAACGTTTACTT--T----A--ACTTTAG-T--TTACTTT-AC-------TA-A-------CCTCCGTC-T-TGTAT-G---AG-AAA-AGGATTG--AACAA------------------------CGGGCCAGATGGAACGA--CACTTTACTCATTCATA--CC-C--CAGACCT
gi|3 : GTGGCGCCAATGAC-GATTACCTTGCA-----TG-------TC------------TGC-TGAA--CTGA----G-A------CAA---GAGTTTACTATTTATTACA--GAACAAGCACAAGCACACCGTCAATAAGCCAATATATTGAATTGATTTTAGGCGCAGTTGAAGCG-T--TTAGCGGCCT--GGGACGTTGTC-T--AG----CA-ATTGAT---AAA-TT-ACA-ATGGTATCGCAGGATCCAAAGGGGGGTA-CC-GGAAGTACC-GATC----GAG------GTA-TATGAGGGCATAACCGGTGGCCT--CAAAGTGTGTAGCA----G-CGGCAGAGCC----GACTTCCAGCCTTGTA-----ATGTACTTTTG-AC-----TGAGGACGGA-AAGTG----C-CTAGCTCGA-TCTGC-ATTACCACTAAAAGCAATTGTTTCAAGAGGATTGCTTCCCTGGATA---AGCGCGTAC-----CATTACTACTACGCTGGTACTCCA-GAA--GAGCTTCTCGCCCCTCTTTGGC-AAGCGG-GTGAGAGGGATACACAAG-ATTGGT----TATTC-TCTGA--GTAGCCCTAA-TCGACGTTTAT-T----------ATTTTGG-C--T---TTTAAACT-----TA-A---TTCCCCTCCGTATTATGTCTAGAGTAGAAAA-AGGATTGCCAAC-A------------------------CGGGATAGATCGGAAGATCCTCTTTACTTCACTATtctctgttaagcaaccaattgcgacaagagaaa
gi|4 : GG-TCCAA--GGGAATATCC-AGTA-TA-C-AACCTGACAAG---CAAGTA-TA-ACGGGCA-AACCGTAGGCCC--A---GTACT-A-------------A----T----AA-TCCCAAACT-ATT-----A---ACTTATC-ACCAATTTG-GGATAGG-AAGTGTTTTC-T--AATC-A-TCTGT--TTACCCC-----------GTTTTCCATAGATT---TCACTTGGTGGTCA---CGT-CTTTTCCA------------TG-TACTCCA-GCACTAAGC-T-T--CGACTCCTGTGTAAAGAGG-TGGAGTGGG-CAC-CAAA-CCT-GT----CACTGACTTGA--GTGACCCCAA-TCAA
gi|5 : acatgcatttgacctcttcaacacgacatattgacagcacaaaattatttttacacatttattgaatgaacctgacaacgtctcacacattgacaacggatttccagagaggagtatacgagtgggcgcattgtaccaaccaaagGG-TCCCGA-GGAA-TA-TTTGGAA-TA-CTGACCT---GAGAACCAAGTA-TA-ACGGGCA-TACCGGTGGTCTGCC---GTTTA-GGC-----GCCAGTA----CCGGAAA-TCTCAAAC-TATT-----A---ATTTTAC-ACCTGTTTG-GGAaaaccacatataacatgtacc
gi|6 : aagtattgattgcaacattccattttaattatcaacattccctgggagatcagggtacccttgtaccttaaatccatttggcctcaaccataatatgacaaaacatacttttcacatttattgaagaaaccaaccaatgcttcacaaatcaaacaataagcaaatcaacaattgaattggaattaaatgggcgccttctataatcccaagAA-TGAACCTTTAC-T--TTTTAA--ACTTTAA-TATT---TTT-ACTT-----TA-ATAATTCCCCTCCGTCTT-TGTAT-GA-CAG-AAA-GGG-TTG-AAACAA------------------------CAGGCAAAGTAGGACAA-CCACTTTACTCAATTATACCCC----CAGACCTGCCACAGACTTCGATATGAT-GTTCCTCCACTACCCACAGAGCTG--AAAACCCACACTGACTCCCATACAA-TGGCAAATTGCCGTGGTTACATTAAATGTATAAGAG-AAGTGAAACATTTCCCTGATTCTAAGAAACATATGAACAGTTGTGTA--TGGTatagcaagacatctcaatttgccg
gi|8 : TTGCATAGAGG-ATGAGAGGACTAC-CAAG-ATT-GT----TAT---CCTGA--GTAGCCCCAA-TCAACGTTTAC-TAAT----ACTACTTTGA-T--T---TTT-AACT-----TA-AT--T-CCCCTCCGTCTT-TGTCT-GA-CAG-AAG-ATGATTG-AAACAA------------------------CGGGTCAGATCGGACGA-CCACT--ACTCAATTAT-CCCC-C--C-GACCTGCCACAGACATCGATATGAT-GTTCCTCCACTACCCACGAAGCCGAAAAAACCCACACTGAATCCCACCCGATTGGCAAATTGCCGTGGTTA
gi|9 : -A--GAGC-TCT--CCCCTCCTTTGCAAAGAGG-ATGAGAGGGATAC-CGAG-ATT-GT----TAT---CCTAA--ATAGCCCCAA-TCAACGTGTAC-T----------ACTTTCA-T--T---TTT-AACT-----TA-AT--T-CCCCTCCGTCTT-TGTCT-GA-CAG-AAA-AGGATTG-AAACAA------------------------CGGGCCAGATCGGACGA-CCACTTTACTCAACTATTCCCCGC--CATACCTGCCACAGACATCGATATGA-------TCCACT------GGAGCCG-AAACACCCACACTGACTTCCACCCGATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAGTTAATTGAACATTCCATTTGAATTACAACAATCCTCTAGTGGTCAGGTACCCTGAACTATGACCCAACGTGAGCCTCAACCAAAACATAACAAAATACAACTTACAAGTTTACACATTTATTGAAGAAACCAGCCAATGCTTCACATAATAAAACAAAAGCAAAAACAATCAGGGTAATTGGAATTTAATGGCCTGCATTGTATCATCTGGCAGGGGTCCCGAGTGGAATATTCCGGAATAAGCCCGACCTGGACCACAAGTATAAGACGATGGGGCAAA
Unaligned ( gi|18 ): ATTTTACACCTATCTGGGATAGGAAGAGATCTCAAATTGTCCGT