lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111
lowQualScore : 4 666 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 22222222 99999999999999999999 5555 11111 1111 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 33333333333333333333333333333333333333333333333333333333333333333333333333333 11111 111 2222222 9999999999999999999999999999999999999999999999999 111 22 222 1 111 88888888888888888888888888888888888888888 11111 11 1111 1 33333333333 111 222222222222222
lowQualScore : 0 111 3 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 22222222 0 11111111111111111111 5 6666 3 66666 7777 0 88888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 77 2 4 22222222222222222222222222222222222222222222222222222222222222222222222222222 3 44444 1 111 8 6666666 0 2222222222222222222222222222222222222222222222222 8 222 33 999 77 66 0 88 5 0 3 111 44 55555555555555555555555555555555555555555 44 66666 6 00 4444 7 6 88888888888 000 1 0 1 777777777777777 6 3
lowQualScore : . ... . . ............................................................................................................................................................................................................................................................................. . ........ . .................... . .... . ..... .... . ..... .......................................................................................... . .. . . ............................................................................. . ..... . ... . ....... . ................................................. . ... .. ... .. .. . .. . . . ... .. ......................................... .. ..... . .. .... . . ........... ... . . . ............... . .
lowQualScore : 0 000 2 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 55555555 6 00000000000000000000 2 8888 0 66666 0000 8 44444 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 55 8 4 99999999999999999999999999999999999999999999999999999999999999999999999999999 0 33333 7 888 0 0000000 8 0000000000000000000000000000000000000000000000000 0 444 88 888 00 55 8 55 0 2 0 777 22 55555555555555555555555555555555555555555 77 77777 7 33 2222 0 0 00000000000 000 4 7 7 666666666666666 0 0
consensus : CGTGTGTTT-GTGCGG--AGTTATTATGAACATGT-TGAA---TTAAA---AAAGAAAAA--NAA-TAAAAACGTAA-------GAA--TTTATA-AGTATAAT---TTATAT---GGTAT------TTGACGTTTTCTTAACAAAAAT-GTATTTTCAAACA--TAT-TTT--C--AAA-NAATA-----GAAGTAACTA-AA-CAA--AAAAATAAT-ATAATGGTANGGG--T--T---TTTCCCA-TA-CGTANCGAATCGTGC---AAC-AAA-TTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTT------TAACACGATAGTAA----TATATA-T-T----GTTTTCGTAGAGATTTATTCTA--AT-TGTCATG----GAATAAGAT----GTGTATACTTT-T------ATA---------TTTTCGAAATC-TGTTTAATTG------GATTCT--------TGT----------------GA---GACAGGGAATATATTACGAGANNTCCTATTCNACCAACGACAA---T-------A----A-------GCAGCTGACCATACAAAAGAAGACGCTTA-AGTT-T-TG--NTTTATAGT-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAA-AGTTTTTCATTCCGAG-----------------------TTT-ACGACCC--TTTCATATTT--TACACA-GTATAGGTGATTAAAGCGTCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCC-----ACATGT--G-GA-A--------A-------------ATTTTNCT-----TG-TAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGGCC-GG-TTTN-TTG---ACGCTTGCGTCAATTTGTTTCTTGTCNAT
Reference ( gi|2 ) : CGTGTGTTTTGTGCGAGTAGTTATTATGAACATGCATAAA---AAAAA---AAAAAAAAA--GAA-AAAAAACGAAACCAGG--GAA--CATGTA-AG-ATAGT---TTATAT---TGTAT------TGGACGTTTTCTTAACCAAAAG-GTATTTGCAAACA--CATATTT--C--AAA-CAATA-----GAAGTAACTA-AAGAAA--AAAAATAATAATAATGGTAAGGG--T--T---TTCCCCA-TG-CGTAGCGAATCGTGC-AAAACCAAA-TTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTT------TAACACGATAGT------TATATACTCT----GTTTTCGTAGAAA---ATTTTA--AT-TGTCATG----GAATAAGAT----GTGTATA------------ATA---------TTTT----------TTTA--TG------A--TCT--------TGT----------------GA---GACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---T-------A----A-------GCAGCTGACCATAC-AAAGAAGACGC-----GTT-T-TG--ATGTATAAC-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAATGGTTTTTCATTCCTAG-----------------------TTT-ACGACCC--TTTCATATTT--TATAT--GTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCC-----AC--------------------A-------------ATTTTCTT-----TG-TAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGGCC-GG-TTTA-TTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAATTT
gi|5 : CGTGTGTTT-GTGCGG--AGTT-TGATGAATATGT-TAAA---TTAAA---AAA--AAAAATGAATAAAAAACGTTAC--GGTAGAA--TTTATA-AGTATAA-----TATAT---GGTAC------T-GACG-TTTCTTAACAAAAAT-GTATTTTCAAACA--TAT-TTTAAT--AAA-AAATA-----GAACAAAC-A-AAACAA--AAAAATGAT--TA--GGT--GGGTTT--T---TTCCCCGTTA-CGTACCGAATCGTGC-----------T----AGTGT--------------TGGTGTTTGGCATCATCTAAAACAAAGATTTTCTT------CA
gi|12 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgtCGAGTGTTT-GTGCGG--AGTTATTATAAACATGT-TGAA---TTATATCTAAAAAAAAA--AAA-TAAAAACGTA--------GAA--TTTATA-A--ATATA---TTATAT---GGTTT------TTAA-G-TTTCTCAACAAAAAT-GTATTTTCAAACA--TAT-TTT--C--
gi|11 : cggtcggttatatgatatgaaagttttaagtaatCGTGTGTTT-GTGCGG--AGTTATTATGAACATGT-TAAATTTAGAAA---A-----------TA-TAAAAACGTA--------GAATTTATATATAT-ATTGTAAATTATAT---GGTAT------T-GACA-ATTCTTAAGAAAAAT-GTATTTTCAAACA--TAT-TTT--C--A
gi|1 : ttaccggccgccaggaggcggtcggtgttttaagttatGTGTGTTT-GTGCGG--AGTTATTATGCAGATGT-TGAA---TTAAA---CAAGAA-----TAA-CAAAAACGTA--------GAG--TTTATA-AGTATAAT-----ATAC---GGTAT------TG-ATGTTT-CTTAGA-AAAAT-GTATTTTCAAACATACATGTAT--C--AAA-CATTATTTACAAAACAACTCTAAGCAATTAACAAAAAC--TAATTATAAGGT--T--T---TT----A-T----T------TCGTACTAAAATAAAA-TTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTAAAAGA----TTTTCTT------T-------------------------------GTTTTCTTAGCGATTTATTCTA--TT-TGCCATGCATGGAGTAAGAT----GTGTATACTTTTTACGGTTATC---------TTTTCAAAATCATGTTTAATTG------GATTCT--------TGT----------------GATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGA----A-------GCAACTGACTATAC-AAGGAAAA--T-----GTT----------TATA--------GT--------TAT--TTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAATAGTTTTT--TT----------------------------TTT-ACGACGC--ATTCATATTTC-TACAC--GTATA------TA-----------------GAGTTTGGACTGACA---TCACTTTTACC-----ACATGTTTGTGAGAG-------A-------------ATTTTTCC-----TG-TAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGGCC-GG-TTTT-TT
gi|15 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatAAAAAGAAAATTA-----AA--TATGTA-GA-AT------TTACATGTATGTATAAGGTATTAACGTTT-CTTAACAAAAAACTTATTTTCAAACA--TAT-TTT--CTAAAG-AAACA-----GATGTAA-TA-AA-CAA--AAAAGTAATGATAat
gi|18 : aacatgttaaattcTATCTTCAAACA--CATTTTT--C--AAAACAGT------------------------------TAAGAATAATGGCAGGAA--TATT---TTTTCTA--A-CGTATCGAATCGTGC-TTAACCAAAATTTGAAGTGCGGGATT-ATAATggttt
gi|4 : AATA-----GAAGTAA-TA-AACAAA--AAAA-------TAATGGTACGAG--T--TGTTTTTCTC--TGACGTAGCG----------------AA-T-----------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAGT------TACATA---T----GTTTCCGTAGATATTTATTCTA--AT-TGTCATG----GAATAAGGT----GTGTACAGTGTAT------ATA---------CTTT----------TTTA--TGGTTATCA--TCTAAAAATCGTGTTTAATTAGATTCTTGTGA---GACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---T-------A----------------------ATACAAAAGAAGACGCTTAAAGTTAT-AG--TTGTATGATGCATTTGTGTA-----
gi|8 : acaAAA-TTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTT------TAACGCGATAGT------TA-A------------TTTCGTAGAGATTTATTCTAATAT-TGTCATG----GAACAAGATATACATGTATAT-----------ATA---------T
gi|21 : taTGATGTTTGACATAATCTAAAACAAAGATTTTCTT------T-ACAGGATCGTAA----TATTTTCTCT----GTTTACGTAGggaacaagatatacatgtataatattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
gi|7 : aatatttcctctAAGATTTTCTT------TGACACGACAGTAACTGTTATATATTTTCTACGTTTTCGTAGAAATTTATTCTA--AA-TATAGTG----AAAT--GAT----TTGTATACTTT--------ATAATGGTTATCTTTTCGAAATCTTGTTTAATTG------GATTCC--------TGT----------------GA---GACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---T-------A----------------------ATACAAAAGAAAACGC------TT-A-TA--CTTTATAG-----TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAAgcatttat
gi|17 : GTAGAGA-----TTTA--TTCTGTCATG----AAATAAGAT----ATATATA------------ATA-----------CT----------TTTA--TG------A--Ta
gi|13 : aataaaatattgaatgaatgaatATGTGTTACGAGATTTCT--TTCGACCAATGACAAATGT-------ACAATA-------G-AGCTGACCATAC-AAAGAAGA-AC-----ATT-TATA--GTTTGAAGT-TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG-AAT---TTCA----------ATTCC-AG-----------------------TTTAATGACCCCATTCCAtaccttttcaaaaccatgtttaatttgattttggt
gi|22 : tgagagtTCATCCAACGACAA---T-------A----ATAGAAAAGCAGCTGACCATAC-A---AAGGCGCTTACAGTT-C-TGGAATTT-TGACGTATTTGTATA-----TA
gi|6 : -TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA--------------TTCCATTCCGAG-----------------------TTT-ACGACCC--ATTCATATTT--TATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGACCTGTGAAAG-----------A-------------ATTTTTTTCCTAATG-TAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCC-CG-GTAATTTA---ACGCTTGTGT
gi|3 : taatgTGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAAGGTTTTTGGTTCTGAG-----------------------GTT-ACGACCC--TTTCATATTGAATACAC--GTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCC-----ATATGTACAGTGTATGTGCGAGA-------------ATTTTCCT-----CG-TAAT--CACT----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGGGC-GGTTTTC-TTG---ACGCTTTCGTCAATTTGTTTCTTGTTA
gi|16 : tacaAAGCAATAACTCCAACAGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTT-ACGACTC--TTTCATATTT--TATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGtacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|29 : GGGTTGACA---TCACTTTGTCA-----ACATGTCTGTGAGAA-------A-------------ATTTAACT-----TG-TAATCGCACT----
gi|20 : CTGACA---TCATGTTGTCA-----AC--------------------ATGTCTGAGAGAGGATTTTCCT-----TG-TAATCGCGCT----ATGCCTCTCAAT----TTTTTTTCAAATCC-----------ACACATTTT
gi|19 : gC--------------------A-------------TTTTTATT-----TAATAATA--ACT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTGTC----TTT--TTT---ACG-TTGCGTCAAGTTGTT
gi|24 : gtgctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAGCCAGA-TTTG-TT----ACGCTTGCGTCAATTTATTTCTTGTCCAT
gi|27 : cTTTTGTATGTAGAAGAA-----TGGTTTGCGACC-GG-TCTC-TTTTT-ACGCTTGCGTAAATTTGTTTCTaccttta
gi|26 : TTGT---TAAAA--ATCAAATGGTTTGTGGCC-G-------TTGGGTATGCTTGTGTCAATTTCTTTCATGT
gi|23 : AATAGCTTGCGGCC-AA-TTTA-TTG---ACGCTTGCGTCAATTTGTTTCTTATgcatatcatattt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CGCTCGCCAGGAGGCTTTGTCGGTTAGTTTTATGTAGTCGTGTGTTTGCCCCGGAGTTATTATGAGCATTTTCATTTGGAAAATTAAAAACGATAATTAAAAACATAGAATCGTGTACGTTTAATGCATGGTATTGTCGTTTGCTTAGAGAAATGTATTTTCAAACAAATGAATAAAAATGAAATATGATAGTT
Unaligned ( gi|10 ): TCCGCCAGGAGGCGGTCGGTTATACGATATGAAAGTTTTAAGTAGTCGTGTGTGTGCGGAATTATTAAGAATGTGTTAAATAAAAATTGATAATAAAAATGTAGAATTTATAAGTATAAGTATTAACGTTCCTAAACAAAACTGTATTGTCAAACATATTTTAAAATTAGATAGA
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|28 ): TAAGATGTGAATACTTTTTATTGAGTATCTTTTCAAAATCATGTTTAATTTGATTGTTGTAA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|31 ): AAAAAGATGGTATTACTTTTTATAGTTACCTTCAAAATCATGCTT
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 2222 444444444444 11111 333 111 1 111 11111 111 11111 222 333 111111 1111 111 666666666666666 2222222 7777777777777777777777777 1111 2222222222222 66666666666666666666666666666666666 222 111 66666666666666666666666666 1 5555555555555555 111 11111 2222222 22222 66666666666666666666666 11 33 111 11111 888888888888888888 1111 1111111 33333333333 2222
lowQualScore : 5 5 77 5 3 2 888 66 0 1111 5 5 666666666666 5 22222 222 444 9 2 5 66 222 33333 000 0 44444 000 99 6 222 66 44 666666 3333 555 1 555555555555555 1 6 6 0000000 3333333333333333333333333 1 99 4444 3333333333333 99999999999999999999999999999999999 77 888 1 111 22 0 1 33333333333333333333333333 1 1 5 6 8888888888888888 6 555 0 22222 0 99 6 1111111 3 1 99999 6 6 11111111111111111111111 6 99 99 66 0 1 5 4 000 1 66666 3 999999999999999999 2 2222 1 77 5 3333333 1 3 11111111111 888 0 0 4 8888 2 3333 1
lowQualScore : . . .. . . . ... .. . .... . . ............ . ..... ... ... . . . .. ... ..... ... . ..... ... .. . ... .. .. ...... .... ... . ............... . . . ....... ......................... . .. .... ............. ................................... .. ... . ... .. . . .......................... . . . . ................ . ... . ..... . .. . ....... . . ..... . . ....................... . .. .. .. . . . . ... . ..... . .................. . .... . .. . ....... . . ........... ... . . . .... . .... .
lowQualScore : 7 7 99 0 1 0 888 99 1 1111 0 0 999999999999 0 55555 999 666 4 4 6 99 222 99999 222 1 33333 000 22 7 888 22 66 000000 0000 888 0 888888888888888 0 7 7 0000000 8888888888888888888888888 7 22 2222 9999999999999 66666666666666666666666666666666666 33 333 0 777 00 8 0 55555555555555555555555555 0 0 5 7 8888888888888888 7 000 1 55555 1 22 7 7777777 2 0 77777 7 7 77777777777777777777777 7 22 00 44 8 4 6 6 000 4 77777 2 000000000000000000 5 1111 0 99 7 7777777 0 2 77777777777 888 1 4 4 1111 6 2222 0
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATA-----AGTATAA-TTATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TTT--C--AAA--AAATA-----GAAGTAA--CTAAACAA--AAAAA-TAAT---TAATGGTAAGGGT--T---TT-T--CCCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA----TATAT-T---T------GTTTTCGTAGAGATTTATTCTA--ATTGT----CATGGAATAAGATGTGT---A---------TACTT-------T--------TATN------T--------TTTCAAAATCAT-GTTTAATTGGATTCTTG---TGAGACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---T-------A----A-------GCAGCTGACCATACAAAAGAAG-ACGCTT-A--GTT-TA--GTT-TATAGT-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAATAG-TTTTTCATTCCGAG-----------------------TTT-ACGACCC--TTTCATATTT--TATACA-GTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCC-----ACATGTCTG-GA------------GAGAA----TTTTCCT--TG-TAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TGAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATA-----AGTATAATTTATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TTT--C--AAA--NAATA-----GAAGTAA--CTAAACAA--AAAAA-TAAT-A-TAATGGTANGGGT--T---TT-T--CCCA-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA----TATATAT---T------GTTTTCGTAGAGATTTATTCTA--ATTGT----CATGGAATAAGATGTGT---A---------TACTT-------T--------TATA------T--------TTTCGAAATC-T-GTTTAATTGGATTCTTG---TGAGACAGGGAATATATTACGAGANNTCCTATTCNACCAACGACAA---T-------A----A-------GCAGCTGACCATACAAAAGAAG-ACGCTT-A-AGTTTTG--NTT-TATAGT-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAA-AG-TTTTTCATTCCGAG-----------------------TTT-ACGACCC--TTTCATATTT--TACACA-GTATAGGTGATTAAAGCGTCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCC-----ACATGT-----G------------GAAAA----TTTTNCT--TG-TAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCNAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-TGAATTAAA---CAA--G---A--ATAA-CAAAAA-CGT------A-----GAGTT-TATA-----AGTATAA--TATACGGTA-TTGATG-TTTCTTAG-AAAAA--TGTATTTTCAAACATACATGTAT--C--AAA--CATTATTTACAAAACAACTCTAAGCAATTAACAA-AAAC---TAATTATAAGGTT--T---TTAT--TTCG-TAC-TAA--AAT-------A-------AAATTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTA----AAAGATTTTCT--------------------------------T---T------GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGT---A---------TACTTTTTACGGT--------TATC------T--------TTTCAAAATCAT-GTTTAATTGGATTCTTGTGATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGA----A-------GCAACTGACTATAC-AAGGAAA-ATG----------------TT-TATAGT----------------TAT--TTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAATAG-TTTTT--TT----------------------------TTT-ACGACGC--ATTCATATTTC-TACAC--GTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACC-----ACATGTTTGTGA------------GAGAA----TTTTTCC--TG-TAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-TAAATAAAA---ATT--GA------TAA-TAAAAA-TGT-A----------GAATT-TATA-----AGTATAA--------GTATT-AACGTTC-CTAAACAAAAC--TGTATTGTCAAACATAT---TTT--A--AAATTAGATA-----GAat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATT-------TA--GAAAA----TA-TAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATTATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAACATAT---TTT--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-TGAATTATATCTAAA--AAAAA--AAAA-TAAAAA-CGT------A-----GAATT-TATA-----AATATA--TTATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAACATAT---TTT--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGT-------ACAATA-------G-AGCTGACCATAC-AAAGAAGAACATTT-A------TA--GTT-TGAAGT-TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG----AATTTCA-----------ATTCC-AG-----------------------TTTAATGACCCCATTCCA
gi|15 : tgAACATGT-TAAATTCAA---AAA--GAAAA--T----TAAATA-TGT-A----------GAATT-TACA-----TGTATG---TATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAACATAT---TTT--CTAAAG--AAACA-----GATGTAA---TAAACAA--AAAAG-TAATGA-TA
gi|16 : AAGCAATAACTCCAACAG-TTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTT-ACGACTC--TTTCATATTT--TATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGggttt
gi|17 : GTAGAGATTTATTCT------GT----CATGAAATAAGATATATATAA---------TACTT-------T--------TATGATTACCT--------TTTCAAAACCAT-GTTTAATTTGATTTTGG---T
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAACACAT---TTTT-C--AAA--ACA----------GT---------TAA--GAA----------TAATGGCAGGAATATT---TT-T--TCTA--ACGTATCGAATCGTGCTTAA---CCAAAATTTGAAGTGCGGGATT-ATAAT
gi|19 : ----TTTTATT--TAATAATAAC--T----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCATAAAAAAAA---AAA--AAAAA--AGAA-AAAAAA-CGA-A----ACCAGGGAACA-TGTA-----AG-ATAGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAACACATA--TTT--C--AAA--CAATA-----GAAGTAA--CTAAAGAA--AAAAAATAAT-AATAATGGTAAGGGT--T---TT-C--CCCA-TGCGTAGCGAATCGTGC--AAAACC--AAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAG-TTA----TATACTC---T------GTTTTCGTAGAAA---ATTTTA--ATTGT----CATGGAATAAGATGTGT---A---------TA--------------------ATA------T--------TTT-----------TTTA--TGA--TCTTG---TGAGACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---T-------A----A-------GCAGCTGACCATAC-AAAGAAG-ACGC------GTTTTG--ATG-TATAAC-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAATGG-TTTTTCATTCCTAG-----------------------TTT-ACGACCC--TTTCATATTT--TATAT--GTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCC-----AC-------------------------AA----TTTTCTT--TG-TAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCA-----ACATGTCTGAGA------------GAGGA----TTTTCCT--TG-TAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCG-TAA----TAT-TTTCTCT------GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---T-------A----ATAGAAAAGCAGCTGACCATACA----AAG-GCGCTT-ACAGTTCTGGAATT-TTGACG-TATTTGTATA-----TA
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTAT
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGA---A---------TACTT-------TTTATTGAGTATC------T--------TTTCAAAATCAT-GTTTAATTTGATTGTTG---TAA
gi|29 : GGGTTGACA---TCACTTTGTCA-----ACATGTCTGTGA------------GAAAA----TTTAACT--TG-TAATCGCACT----
gi|3 : TGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAA-AGGTTTTTGGTTCTGAG-----------------------GTT-ACGACCC--TTTCATATTGAATACAC--GTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCC-----ATATGT-----ACAGTGTATGTGCGAGAA----TTTTCCT--CG-TAATCAC--T----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|4 : tacaAATA-----GAAGTAA---TAAACAA--AAAAA-TAAT-------GGTACGAGT--TGTTTT-T--CTCT-GACGTAGCGAAT------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAG-T------TACATAT----------GTTTCCGTAGATATTTATTCTA--ATTGT----CATGGAATAAGGTGTGT---ACAGTGTATATACTT-------T--------TTTA------TGGTTATCATCTAAAAATCGT-GTTTAATTAGATTCTTG---TGAGACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---T-------A----------------------ATACAAAAGAAG-ACGCTTAA-AGTTATA--GTTGTATGATGCATTTGTGTA-----tatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|5 : acaCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-TAAATTAAA---AAA--AAAAA--TGAA-TAAAAAACGTTACGGTA-----GAATT-TATA-----AGTATAAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAACATAT---TTTAAT--AAA--AAATA-----GAACAAA--CAAAACAA--AAAAA-TGAT---TA--GGT--GGGT--T---TT-TTCCCCGTTACGTACCGAATCGTGC----------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgt-TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA---------------TTCCATTCCGAG-----------------------TTT-ACGACCC--ATTCATATTT--TATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGACCTGT-----G------------AAAGAATTTTTTTCCTAATG-TAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAG-TAACTGTTATATAT---TTTCTACGTTTTCGTAGAAATTTATTCTA--AATAT----AGTGAAAT--GATTTGT---A---------TACTT-------TATAATGGTTATC------T--------TTTCGAAATC-TTGTTTAATTGGATTCCTG---TGAGACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---T-------A----------------------ATACAAAAGAAA-ACGCTT-A------TA--CTT-TATAG-----TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : --AAATTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGTTAA-----------------------TTTCGTAGAGATTTATTCTAATATTGT----CATGGAACAAGA----T---A---------TACAT-------G--------TATA------T--------a
gi|9 : taCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGA---AAATTAAAAACGATAATTAAAAA-CAT------A-----GAATCGTGTA-----CGTTTAA--TGCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAACAAAT---atatggaacaagatatacatgtataatattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|31 ): AAAAAGATGGTATTACTTTTTATAGTTACCTTCAAAATCATGCTT
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 1111 444444444444 22222222222 1 1 222 11111 111111 222 111111 111 1111 111 666666666666666 2222222 6666666666666666666666666 1111 7777777777777777777777777777777777777777777777777777777777777777777 111 111 66666666666666666666666666 55555555555 111 11111 2222222 1111 77777777777777777777777 33 111 4444444444444 111 1111 33333333333 2222
lowQualScore : 5 5 77 5 2 888 8888 8888 5 5 666666666666 5 0 99999999999 7 6 5 8 5 66 000 44444 66 222222 000 99 6 222222 44 8 444 3333 222 1 555555555555555 1 6 6 0000000 1111111111111111111111111 1 99 4444 0000000000000000000000000000000000000000000000000000000000000000000 000 0 1 111 22 0 1 33333333333333333333333333 1 1 7 5 6 1 88888888888 6 555 0 22222 0 99 6 1111111 3 1 3333 5 44444444444444444444444 1 0 22 0 1 5 000 1 9999999999999 111 99 6 2222 1 3 11111111111 888 0 0 4 8888 2 3333
lowQualScore : . . .. . . ... .... .... . . ............ . . ........... . . . . . .. ... ..... .. ...... ... .. . ...... .. . ... .... ... . ............... . . . ....... ......................... . .. .... ................................................................... ... . . ... .. . . .......................... . . . . . . ........... . ... . ..... . .. . ....... . . .... . ....................... . . .. . . . ... . ............. ... .. . .... . . ........... ... . . . .... . ....
lowQualScore : 7 7 99 0 0 888 1111 1111 0 0 999999999999 0 5 99999999999 4 2 5 1 6 99 000 00000 99 666666 000 22 7 000000 44 0 000 0000 222 0 888888888888888 0 7 7 0000000 2222222222222222222222222 7 22 2222 3333333333333333333333333333333333333333333333333333333333333333333 000 3 0 777 44 8 0 55555555555555555555555555 0 0 3 7 7 0 33333333333 7 000 1 55555 1 22 7 7777777 2 0 5555 0 00000000000000000000000 4 8 88 8 4 6 000 4 3333333333333 777 22 3 1111 0 2 77777777777 888 1 4 4 1111 6 2222
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TTT--C--AAA--AAATA-----GAAGTAA--CTAAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATATT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGT----CATGGAATAAGATGTGTA---------TA---CTT-------T--------T--------ATN------T-TT----T----C--AAAAT---CATGTTTAATTGGATTCTTG---TGAGACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---T-------A----A-------GCAGCTGACCATACAAAAGAAG-ACGCTT--A-TT-T---AGTT-TATAGT-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TTT--C--AAA--AAATA-----GAAGTAA--CTAAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CCCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATATT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGT----CATGGAATAAGATGTGTA---------TA---CTT-------T--------T--------ATN------T-TT----T----C--AAAAT---CATGTTTAATTGGATTCTTG---TGAGACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---T-------A----A-------GCAGCTGACCATACAAAAGAAG-ACGCTT--AGTT-T---AGTT-TATAGT-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACA-GTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TG-GAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-TGAATTAAA---CAA--G---A--ATAA-CAAAAA-CGT------A-----GAGTT-TATAAGTAT------AA-T-ATACGGTA-TTGATG-TTTCTTAG-AAAAA--TGTATTTTCAAACATACATGTAT--C--AAA--CATTATTTACAAAACAACTCTAAGCAATTAACAA-AAAC--TAATTATAAGGTT-T---TTAT--TTCG-TAC-TAA--AAT-------A-------AAATTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTA----AAAGATTTTC---------------------------------TT---T-----GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGTA---------TA---CTTTTTACGGT--------T--------ATC------T-TT----T----C--AAAAT---CATGTTTAATTGGATTCTTGTGATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGA----A-------GCAACTGACTATAC-AAGGAAA-AT----------------GTT-TATAGT----------------TAT--TTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAAT---AGTTTTT--TT----------------------------TTTACGACGCATTCATATTTC-TACACGTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACCACATG-T-T------TGTGAGAGAA---TTTTTCC--TGTAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-TAAATAAAA---ATT--G------ATAA-TAAAAA-TGT------A-----GAATT-TATAAGTAT------AA--------GTA-TTAACG-TTCCTAAACAAAAC--TGTATTGTCAAACATAT---TTT--A--AAATTAGATA-----GAat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATT-------TA--GAAAA----TA-TAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATT-ATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAACATAT---TTT--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-TGAATTATATCTAAA--AAAAA--AAAA-TAAAAA-CGT------A-----GAATT-TATAAATAT-------ATT-ATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAACATAT---TTT--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGT-------ACAATA-------G-AGCTGACCATAC-AAAGAAGAACATTT--A----T---AGTT-TGAAGT-TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG----AATTTCAATTCCAGTTT
gi|15 : tgAACATGT-TAAATTCAA---AAA--GAAAA--T----TAAATA-TGT-A----------GAATT-TACATGTAT------G--T-ATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAACATAT---TTT--CTAAAG--AAACA-----GATGTAA---TAAACAA--AAAAG-TAAT--aatgaccccattcca
gi|16 : AAGCAATAACTCCAAC---AGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTTACGACTCTTTCATATTTTATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGgataggttt
gi|17 : GTAGAGATTTATTCT------GT----CATGAAATAAGATATATA---------TAATACTT-------T--------T--------ATGATTACCT-TT----T----C--AAAAC---CATGTTTAATTTGATTTTGG---T
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAACACAT---TTTT-C--AAA--ACA----------GT---------TAA--GAA---------TAATGGCAGGAATAT---TT-T--TTCT-AACGTATCGAATCGTGCTTAA---CCAAAATTTGAAGTGCGGGATT-ATAAT
gi|19 : CT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatttttatttaataataaCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCATAAAAAAAA---AAA--AAAAA--AGAA-AAAAAA-CGA-A----ACCAGGGAACA-TGTAAG-AT------AGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAACACATA--TTT--C--AAA--CAATA-----GAAGTAA--CTAAAGAA--AAAAAATAATAATAATGGTAAGGGT-T---TT-C--CCCA-TGCGTAGCGAATCGTGC--AAAACC--AAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAG-TTA------TATACTC--T-----GTTTTCGTAGAAA---ATTTTA--ATTGT----CATGGAATAAGATGTGTA---------TA-------------------------------ATA------T-TT----T-------------------TTTA--TGA--TCTTG---TGAGACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---T-------A----A-------GCAGCTGACCATACAAA-GAAG-ACGCGT----TT-T---GATG-TATAAC-TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAAT---GGTTTTTCATTCCTAG-----------------------TTTACGACCCTTTCATATTTTATAT--GTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCCACA---------------------A---TTTTCTT--TGTAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCAACATG-T-C------TGAGAGAGGA---TTTTCCT--TGTAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCG-TAA------TATTTTCTCT-----GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---T-------A----ATAGAAAAGCAGCTGACCATACA----AAG-GCGCTTACAGTT-CTGGAATT-TTGACG-TATTTGTATA-----TA
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTAT
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGAA---------TA---CTT-------T--------TTATTGAGTATC------T-TT----T----C--AAAAT---CATGTTTAATTTGATTGTTG---TAA
gi|29 : GGGTTGACA---TCACTTTGTCAACATG-T-C------TGTGAGAAAA---TTTAACT--TGTAATCGCACT----
gi|3 : TGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAA---GGTTTTTGGTTCTGAG-----------------------GTTACGACCCTTTCATATTGAATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCCATATG-TACAGTGTATGTGCGAGAA---TTTTCCT--CGTAATCAC--T----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|4 : taca--AAATA-----GAAGTAA---TAAACAA--AAAAA-TAAT------GGTACGAGT-TGTTTT-T--CTCT-GACGTAGCGAAT------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAG-TTA------CATAT----------GTTTCCGTAGATATTTATTCTA--ATTGT----CATGGAATAAGGTGTGTACAGTGTATATA---CTT-------T--------TTT------ATG------G-TTATCAT----CTAAAAAT---CGTGTTTAATTAGATTCTTG---TGAGACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---T-------A----------------------ATACAAAAGAAG-ACGCTTAAAGTTAT---AGTTGTATGATGCATTTGTGTA-----tatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|5 : acCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-TAAATTAAA---AAA--AAAAA--TGAA-TAAAAAACGTTACGGTA-----GAATT-TATAAGTAT------AAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAACATAT---TTTAAT--AAA--AAATA-----GAACAAA--CAAAACAA--AAAAA-TGAT--TA--GGT--GGGT-T---TT-TTCCCCGTTACGTACCGAATCGTGC----------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgt-TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA-----------------TTCCATTCCGAG-----------------------TTTACGACCCATTCATATTTTATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGAC-C------TGTGAAAGAATTTTTTTCCTAATGTAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAG-TAACTGTTATATATT---TTCTACGTTTTCGTAGAAATTTATTCTA--AATAT----AGTGAAAT--GATTTGTA---------TA---CTT-------TATAATGGTT--------ATC------T-TT----T----C--GAAAT---CTTGTTTAATTGGATTCCTG---TGAGACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---T-------A----------------------ATACAAAAGAAA-ACGCTT--A----T---ACTT-TATAG-----TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : --AAATTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGTTAA-----------------------TTTCGTAGAGATTTATTCTAATATTGT----CATGGAACAAGA----TA---------TA---CAT-------G--------T--------ATA------TATA----TGGAAC--AAGATATACATGTATAATa
gi|9 : taCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGA---AAATTAAAAACGATAATTAAAAA-CAT------A-----GAATCGTGTACGTTT------AA-T-GCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAACAAATGAAT--------AA--AAAT------GAAATAattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|31 ): AAAAAGATGGTATTACTTTTTATAGTTACCTTCAAAATCATGCTT
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 2222 444444444444 22222222222 111 1 11111111111111 111111 1111 111111 111 1111 111 666666666666666 2222222 77777777777777777777777777 1111 777777777777777777777777777777777777777777777777777777777777 111 111 111 66666666666666666 4444444 1 22222222 111111111111 2222222 1111 77777777777777777777777 111 2222222222 111 1111 33333333333 2222
lowQualScore : 5 5 77 5 2 888 66 0 1111 5 5 666666666666 5 0 99999999999 444 9 4 5 66 88888888888888 66 222222 9999 99 6 222222 44 8 444 3333 222 1 555555555555555 1 6 6 3333333 33333333333333333333333333 1 99 4444 000000000000000000000000000000000000000000000000000000000000 000 0 1 444 22 0 1 111 99999999999999999 1 1 7 3 6 1 8888888 1 3 66666666 1 999999999999 6 1111111 3 1 3333 5 44444444444444444444444 1 0 0 0 1 5 000 1 1 6666666666 111 99 0 2222 1 3 11111111111 888 0 0 4 8888 2 3333
lowQualScore : . . .. . . ... .. . .... . . ............ . . ........... ... . . . .. .............. .. ...... .... .. . ...... .. . ... .... ... . ............... . . . ....... .......................... . .. .... ............................................................ ... . . ... .. . . ... ................. . . . . . . ....... . . ........ . ............ . ....... . . .... . ....................... . . . . . . ... . . .......... ... .. . .... . . ........... ... . . . .... . ....
lowQualScore : 7 7 99 0 0 888 99 1 1111 0 0 999999999999 0 5 99999999999 666 4 2 6 99 00000000000000 99 666666 3333 22 7 000000 44 0 000 0000 222 0 888888888888888 0 7 7 6666666 22222222222222222222222222 7 22 2222 333333333333333333333333333333333333333333333333333333333333 000 3 0 000 44 8 0 777 88888888888888888 0 0 3 2 7 0 0000000 0 3 00000000 4 333333333333 7 7777777 2 0 5555 0 00000000000000000000000 4 8 8 8 4 6 000 4 7 8888888888 777 22 7 1111 0 2 77777777777 888 1 4 4 1111 6 2222
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT--------TT-------ATN------T-TT----T----C--AAAAT---CATGTTTAATTGGATTCTTGTGA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGCTTA------TAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT--------T--------ATN------T-TT----T----C--AAAAT---CATGTTTAATTGGATTCTTGTGA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGCTTA---TT-TAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-TGAATTAAA---CAA--GAA-----TAA-CAAAAA-CGT-A----------GAGTT-TATAAGTAT------AAT--ATACGGTATT-GATGTTT-CTTAG-AAAAA--TGTATTTTCAAACATAC---ATGTAT--C--AAA--CATTATTTACAAAACAACTCTAAGCAATTAACAA-AAAC--TAATTATAAGGTT-T---TTAT--TTCG-TAC-TAA--AAT--------A------AAATTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTAAAA----GATTTTCTTT------------------------------------------GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGTA---------TA---CTTT--------TTACGGTT-ATC------T-TT----T----C--AAAAT---CATGTTTAATTGGATTCTTGTGATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGAA-------GCAACTGACTATACAAG-GAAA-ATG-------------TT-TATAGT-------TATTTGT-----------------CGAACA-GT-------TGTTGTAAAGCAATAACTACAAT---AGTTTTT--TT----------------------------TTTACGACGCATTCATATTTC-TACACGTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACCACATG-T-T------TGTGAGAGAA---TTTTTCC--TGTAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-TAAATAAAA---ATT--G------ATAA-TAAAAA-TGT------A-----GAATT-TATAAGTAT------AA--------GTA-TTAACG-TTCCTAAACAAAAC--TGTATTGTCAAACATAT---TT---T--A--AAATTAGATA-----GAat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATT-------TA--GAAAA----TA-TAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATT-ATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAACATAT---TT---T--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-TGAATTATATCTAAA--AAAAA--AAAA-TAAAAA-CGT------A-----GAATT-TATAAATAT-------ATT-ATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGTACAAT---A-------G-AGCTGACCATAC-AAAGAAGAACATTTA------TAGTT-TGAAGT-------TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG----AATTTCAATTCCAGTTT
gi|15 : tgAACATGT-TAAATTCAA---AAA--GAAAA--T----TAAATA-TGT-A----------GAATT-TACATGTAT------G--T-ATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAACATAT---TT---T--CTAAAG--AAACA-----GATGTAA-T--AAACAA--AAAAG-TAAT--aatgaccccattcca
gi|16 : AAGCAATAACTCCAAC---AGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTTACGACTCTTTCATATTTTATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGgataggttt
gi|17 : GTAGAGATTTATTCT------GTCATG----AAATAAGATATATA---------TAATACTTT--------T--------ATGATTACCT-TT----T----C--AAAAC---CATGTTTAATTTGATTTTGGT
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAACACAT---TT---TT-C--AAA--ACA----------GT---------TAA--GAA---------TAATGGCAGGAATAT---TT-T--TTCT-AACGTATCGAATCGTGCTTAA---CCAAAATTTGAAGTGCGGGATT-ATAAT
gi|19 : CT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatttttatttaataataaCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCATAAAAAAAA---AAA--AAAAA--AGAA-AAAAAA-CGA-A----ACCAGGGAACA-TGTAAG-AT------AGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAACACATA--TT---T--C--AAA--CAATA-----GAAGTAACT--AAAGAA--AAAAAATAATAATAATGGTAAGGGT-T---TT-C--CCCA-TGCGTAGCGAATCGTGC--AAAACC--AAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAG-TTA------TATACTC---T-----GTTTTCGTAGAAA---ATTTTA--ATTGTCATG----GAATAAGATGTGTA---------TA------------------------ATA------T-TT----T-------------------TTTA--TGA--TCTTGTGA---GACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---TA-------A-------GCAGCTGACCATAC-AAAGAAG-ACGCGT----TT-TGATG-TATAAC-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAAT---GGTTTTTCATTCCTAG-----------------------TTTACGACCCTTTCATATTTTAT--ATGTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCCAC---------------------AA---TTTTCTT--TGTAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCAACATG-T-C------TGAGAGAGGA---TTTTCCT--TGTAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCG-TAA------TATT-TTCTCT-----GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---TA-------ATAGAAAAGCAGCTGACCATACA----AAG-GCGCTTA------CAGTTCTGGAATTTTGACGTATTTGTATA-----TA
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTAT
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGAA---------TA---CTTT--------TTATTGAGTATC------T-TT----T----C--AAAAT---CATGTTTAATTTGATTGTTGTAA---
gi|29 : GGGTTGACA---TCACTTTGTCAACATG-T-C------TGTGAGAAAA---TTTAACT--TGTAATCGCACT----
gi|3 : TGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAA---GGTTTTTGGTTCTGAG-----------------------GTTACGACCCTTTCATATTGAATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCCATATG-TACAGTGTATGTGCGAGAA---TTTTCCT--CGTAAT--CACT----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|4 : taca--AAATA-----GAAGTAA-T--AAACAA--AAAAA-TAAT------GGTACGAGT-TGTTTT-T--CTCT-GACGTAGCGAAT------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAG-TTA------CATA-T----------GTTTCCGTAGATATTTATTCTA--ATTGTCATG----GAATAAGGTGTGTACAGTGTATATA---CTTT--------TTT------ATG------G-TTATCAT----CTAAAAAT---CGTGTTTAATTAGATTCTTGTGA---GACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---TA-------------------------ATACAAAAGAAG-ACGCTTAAAGTTATAGTTGTATGATG------CATTTGTGTA-----tatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|5 : acCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-TAAATTAAA---AAA--AAAAA--TGAA-TAAAAAACGTTACGGTA-----GAATT-TATAAGTAT------AAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAACATAT---TT---TAAT--AAA--AAATA-----GAACAAACA--AAACAA--AAAAA-TGAT--TA--GGT--GGGT-T---TT-TTCCCCGTTACGTACCGAATCGTGC----------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgt-------TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA-----------------TTCCATTCCGAG-----------------------TTTACGACCCATTCATATTTTATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGAC-C------TGTGAAAGAATTTTTTTCCTAATGTAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAG-TAACTGTTATATA-TT---TTCTACGTTTTCGTAGAAATTTATTCTA--AATATAGTG----AAAT--GATTTGTA---------TA---CTTTATAATGGTT--------ATC------T-TT----T----C--GAAAT---CTTGTTTAATTGGATTCCTGTGA---GACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---TA-------------------------ATACAAAAGAAA-ACGCTTA------TACTT-TATAG-----------TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : --AAATTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGTTAA------------------------TTTCGTAGAGATTTATTCTAATATTGTCATG----GAACAAGA----TA---------TA---CATG--------T--------ATA------TATA----TGGAAC--AAGATATACATGTATAATa
gi|9 : taCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGA---AAATTAAAAACGATAATTAAAAA-CAT------A-----GAATCGTGTACGTTT------AA-T-GCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAACAAATGAAT-----------AA--AAAT------GAAATAattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|31 ): AAAAAGATGGTATTACTTTTTATAGTTACCTTCAAAATCATGCTT
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 2222 444444444444 22222222222 111 1 11111111111111 111111 1111 111111 111 1111 111 666666666666666 2222222 77777777777777777777777777 1111 111111111 5555555555555555555555555555555555555 1111 111 222 111 66666666666666666 22222222222222222222222222222 2222222 1111 77777777777777777777777 111 2222222222 111 1111 33333333333 2222
lowQualScore : 5 5 77 5 2 888 66 0 1111 5 5 666666666666 5 0 99999999999 444 9 4 5 66 88888888888888 66 222222 9999 99 6 222222 44 8 444 3333 222 1 555555555555555 1 6 6 3333333 33333333333333333333333333 1 99 4444 777777777 4 888 8888888888888888888888888888888888888 888 0000 66 5 5 000 000 22 0 1 111 99999999999999999 1 1 7 3 6 6 88888888888888888888888888888 77 6 1111111 3 1 3333 5 44444444444444444444444 1 0 0 0 1 5 000 1 1 6666666666 111 99 0 2222 1 3 11111111111 888 0 0 4 8888 2 3333
lowQualScore : . . .. . . ... .. . .... . . ............ . . ........... ... . . . .. .............. .. ...... .... .. . ...... .. . ... .... ... . ............... . . . ....... .......................... . .. .... ......... . ... ..................................... ... .... .. . . ... ... .. . . ... ................. . . . . . . ............................. .. . ....... . . .... . ....................... . . . . . . ... . . .......... ... .. . .... . . ........... ... . . . .... . ....
lowQualScore : 7 7 99 0 0 888 99 1 1111 0 0 999999999999 0 5 99999999999 666 4 2 6 99 00000000000000 99 666666 3333 22 7 000000 44 0 000 0000 222 0 888888888888888 0 7 7 6666666 22222222222222222222222222 7 22 2222 888888888 4 888 5555555555555555555555555555555555555 888 6666 99 7 7 000 888 44 8 0 777 88888888888888888 0 0 3 2 7 7 22222222222222222222222222222 99 7 7777777 2 0 5555 0 00000000000000000000000 4 8 8 8 4 6 000 4 7 8888888888 777 22 7 1111 0 2 77777777777 888 1 4 4 1111 6 2222
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------T-A---CTTT-------T-----T-------A------TC-------TT---T----TC--AAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------T-A---CTTT-------T-----T-------A------TN-------TT---T----TC--AAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-TGAATTAAA---CAA--GAA-----TAA-CAAAAA-CGT-A----------GAGTT-TATAAGTAT------AAT--ATACGGTATT-GATGTTT-CTTAG-AAAAA--TGTATTTTCAAACATAC---ATGTAT--C--AAA--CATTATTTACAAAACAACTCTAAGCAATTAACAA-AAAC--TAATTATAAGGTT-T---TTAT--TTCG-TAC-TAA--AAT--------A------AAATTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTAAAA----GATTTTCTTT------------------------------------------GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGTA---------T-A---CTTT-------T-----T-------ACGGTTATC-------TT---T----TC--AAAATCATGTTTAATT-GG-ATTCTTGT---GATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGAA-------GCAACTGACTATACAAG-GAAA-ATGT-TTATAGTT------------------------------AT--TTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAAT---AGTTTTT--TT----------------------------TTTACGACGCATTCATATTTC-TACACGTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACCACATG-T-T------TGTGAGAGAA---TTTTTCC--TGTAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-TAAATAAAA---ATT--G------ATAA-TAAAAA-TGT------A-----GAATT-TATAAGTAT------AA--------GTA-TTAACG-TTCCTAAACAAAAC--TGTATTGTCAAACATAT---TT---T--A--AAATTAGATA-----GAat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATT-------TA--GAAAA----TA-TAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATT-ATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAACATAT---TT---T--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-TGAATTATATCTAAA--AAAAA--AAAA-TAAAAA-CGT------A-----GAATT-TATAAATAT-------ATT-ATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGTACAAT---A-------G-AGCTGACCATAC-AAAGAAGAACAT-TTATAGTT-TGAAGT-------TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG----AATTTCAATTCCAGTTT
gi|15 : tgAACATGT-TAAATTCAA---AAA--GAAAA--T----TAAATA-TGT-A----------GAATT-TACATGTAT------G--T-ATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAACATAT---TT---T--CTAAAG--AAACA-----GATGTAA-T--AAACAA--AAAAG-TAAT--aatgaccccattcca
gi|16 : AAGCAATAACTCCAAC---AGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTTACGACTCTTTCATATTTTATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGgataggttt
gi|17 : GTAGAGATTTATTCT------GTCATG----AAATAAGATATATA---------T-AATACTTT-------TATGATT-------A------CC-------TT---T----TC--AAAACCATGTTTAATT-TG-ATTTTGGT---
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAACACAT---TT---TT-C--AAA--ACA----------GT---------TAA--GAA---------TAATGGCAGGAATAT---TT-T--TTCT-AACGTATCGAATCGTGCTTAA---CCAAAATTTGAAGTGCGGGATT-ATAAT
gi|19 : CT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatttttatttaataataaCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCATAAAAAAAA---AAA--AAAAA--AGAA-AAAAAA-CGA-A----ACCAGGGAACA-TGTAAG-AT------AGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAACACATA--TT---T--C--AAA--CAATA-----GAAGTAACT--AAAGAA--AAAAAATAATAATAATGGTAAGGGT-T---TT-C--CCCA-TGCGTAGCGAATCGTGC--AAAACC--AAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAG-TTA------TATACTC---T-----GTTTTCGTAGAAA---ATTTTA--ATTGTCATG----GAATAAGATGTGTA---------T-A----------------------------A------TA-------TT---T----T------------TTTA--T-GA---TCTTGT---GA---GACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---TA-------A-------GCAGCTGACCATAC-AAAGAAG-ACGCGTTTTGATG-TATAAC-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAAT---GGTTTTTCATTCCTAG-----------------------TTTACGACCCTTTCATATTTTAT--ATGTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCCAC---------------------AA---TTTTCTT--TGTAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCAACATG-T-C------TGAGAGAGGA---TTTTCCT--TGTAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCG-TAA------TATT-TTCTCT-----GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---TA-------ATAGAAAAGCAGCTGACCATACA----AAG-GCGC-TTACAGTTCTGGAATTTTGACGTATTTGTATA-----TA
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTAT
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGAA---------T-A---CTTT-------T-----T-------A------TTGAGTATCTT---T----TC--AAAATCATGTTTAATT-TG-ATTGTTGT---AA---
gi|29 : GGGTTGACA---TCACTTTGTCAACATG-T-C------TGTGAGAAAA---TTTAACT--TGTAATCGCACT----
gi|3 : TGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAA---GGTTTTTGGTTCTGAG-----------------------GTTACGACCCTTTCATATTGAATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCCATATG-TACAGTGTATGTGCGAGAA---TTTTCCT--CGTAAT--CACT----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|31 : tacaAAAAAGATG-GTA---------TTA---CTTT-------T-----T-------A------TAG------TTACCT----TC--AAAATCATGCTTtatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|4 : --AAATA-----GAAGTAA-T--AAACAA--AAAAA-TAAT------GGTACGAGT-TGTTTT-T--CTCT-GACGTAGCGAAT------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAG-TTA------CATA-T----------GTTTCCGTAGATATTTATTCTA--ATTGTCATG----GAATAAGGTGTGTACAGTGTATAT-A---CTTT-------T-----TT------A------TG-------GT---TATCATCTAAAAATCGTGTTTAATT-AG-ATTCTTGT---GA---GACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---TA-------------------------ATACAAAAGAAG-ACGC-TTAAAG-T-TATAGT-------TGTATG-ATG-----CAT--TTGT
gi|5 : acCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-TAAATTAAA---AAA--AAAAA--TGAA-TAAAAAACGTTACGGTA-----GAATT-TATAAGTAT------AAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAACATAT---TT---TAAT--AAA--AAATA-----GAACAAACA--AAACAA--AAAAA-TGAT--TA--GGT--GGGT-T---TT-TTCCCCGTTACGTACCGAATCGTGC----------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------gta
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgt-------TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA-----------------TTCCATTCCGAG-----------------------TTTACGACCCATTCATATTTTATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGAC-C------TGTGAAAGAATTTTTTTCCTAATGTAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAG-TAACTGTTATATA-TT---TTCTACGTTTTCGTAGAAATTTATTCTA--AATATAGTG----AAAT--GATTTGTA---------T-A---CTTTATAATGGT-----T-------A------TC-------TT---T----TC--GAAATCTTGTTTAATT-GG-ATTCCTGT---GA---GACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---TA-------------------------ATACAAAAGAAA-ACGC-TTATACTT-TATAG-----------TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : --AAATTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGTTAA------------------------TTTCGTAGAGATTTATTCTAATATTGTCATG----GAACAAGATATACA---------T-a
gi|8 : taTA---------T-A---CTTT-------T-----TTATGGTTA------TC-------TT---T----TC--AAAACCATGTTTAATTCGGCATTCTCACACAGACG-GACAGGGAgtatatatatggaacaagatatacatgtataatattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
gi|9 : taaaatttgaagtgcagaattatgttggtgtttgtcgtcatctaaaacaaagattttctttaacgcgatagttaatttcgtagagatttattctaatattgtcatggaacaagatatacatgtatatatatggaacaagatatacatgtataatattttaaaCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGA---AAATTAAAAACGATAATTAAAAA-CAT------A-----GAATCGTGTACGTTT------AA-T-GCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAACAAATGAAT-----------AA--AAAT------GAAATAgat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 2222 444444444444 22222222222 111 1 11111111111111 111111 1111 111111 111 1111 111 666666666666666 2222222 77777777777777777777777777 1111 222222222 111 777777777777777777777777777777777777 111 222 111 66666666666666666 22222222222222222222222222222 2222222 1111 77777777777777777777777 111 2222222222 111 1111 33333333333 2222
lowQualScore : 5 5 77 5 2 888 66 0 1111 5 5 666666666666 5 0 99999999999 444 9 4 5 66 88888888888888 66 222222 9999 99 6 222222 44 8 444 3333 222 1 555555555555555 1 6 6 3333333 33333333333333333333333333 1 99 4444 000000000 000 888888888888888888888888888888888888 0 0 5 5 000 000 22 0 1 111 99999999999999999 1 1 7 3 6 6 88888888888888888888888888888 77 6 1111111 3 1 3333 5 44444444444444444444444 1 0 0 0 1 5 000 1 1 6666666666 111 99 0 2222 1 3 11111111111 888 0 0 4 8888 2 3333
lowQualScore : . . .. . . ... .. . .... . . ............ . . ........... ... . . . .. .............. .. ...... .... .. . ...... .. . ... .... ... . ............... . . . ....... .......................... . .. .... ......... ... .................................... . . . . ... ... .. . . ... ................. . . . . . . ............................. .. . ....... . . .... . ....................... . . . . . . ... . . .......... ... .. . .... . . ........... ... . . . .... . ....
lowQualScore : 7 7 99 0 0 888 99 1 1111 0 0 999999999999 0 5 99999999999 666 4 2 6 99 00000000000000 99 666666 3333 22 7 000000 44 0 000 0000 222 0 888888888888888 0 7 7 6666666 22222222222222222222222222 7 22 2222 000000000 000 000000000000000000000000000000000000 7 3 7 7 000 888 44 8 0 777 88888888888888888 0 0 3 2 7 7 22222222222222222222222222222 99 7 7777777 2 0 5555 0 00000000000000000000000 4 8 8 8 4 6 000 4 7 8888888888 777 22 7 1111 0 2 77777777777 888 1 4 4 1111 6 2222
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT-------T-----T-------A------T-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT-------T-----T-------A------T-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-TGAATTAAA---CAA--GAA-----TAA-CAAAAA-CGT-A----------GAGTT-TATAAGTAT------AAT--ATACGGTATT-GATGTTT-CTTAG-AAAAA--TGTATTTTCAAACATAC---ATGTAT--C--AAA--CATTATTTACAAAACAACTCTAAGCAATTAACAA-AAAC--TAATTATAAGGTT-T---TTAT--TTCG-TAC-TAA--AAT--------A------AAATTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTAAAA----GATTTTCTTT------------------------------------------GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGTA---------TA---CTTT-------T-----T-------ACGGTTAT-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGAA-------GCAACTGACTATACAAG-GAAA-ATGT-TTATAGTT------------------------------AT--TTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAAT---AGTTTTT--TT----------------------------TTTACGACGCATTCATATTTC-TACACGTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACCACATG-T-T------TGTGAGAGAA---TTTTTCC--TGTAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-TAAATAAAA---ATT--G------ATAA-TAAAAA-TGT------A-----GAATT-TATAAGTAT------AA--------GTA-TTAACG-TTCCTAAACAAAAC--TGTATTGTCAAACATAT---TT---T--A--AAATTAGATA-----GAat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATT-------TA--GAAAA----TA-TAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATT-ATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAACATAT---TT---T--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-TGAATTATATCTAAA--AAAAA--AAAA-TAAAAA-CGT------A-----GAATT-TATAAATAT-------ATT-ATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGTACAAT---A-------G-AGCTGACCATAC-AAAGAAGAACAT-TTATAGTT-TGAAGT-------TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG----AATTTCAATTCCAGTTT
gi|15 : tgAACATGT-TAAATTCAA---AAA--GAAAA--T----TAAATA-TGT-A----------GAATT-TACATGTAT------G--T-ATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAACATAT---TT---T--CTAAAG--AAACA-----GATGTAA-T--AAACAA--AAAAG-TAAT--aatgaccccattcca
gi|16 : AAGCAATAACTCCAAC---AGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTTACGACTCTTTCATATTTTATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGgataggttt
gi|17 : GTAGAGATTTATTCT------GTCATG----AAATAAGATATATA---------TAATACTTT-------TATGATT-------A------C-------CTTTTCAAAACCATGTTTAATT-TG-ATTTTGGT---
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAACACAT---TT---TT-C--AAA--ACA----------GT---------TAA--GAA---------TAATGGCAGGAATAT---TT-T--TTCT-AACGTATCGAATCGTGCTTAA---CCAAAATTTGAAGTGCGGGATT-ATAAT
gi|19 : CT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatttttatttaataataaCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCATAAAAAAAA---AAA--AAAAA--AGAA-AAAAAA-CGA-A----ACCAGGGAACA-TGTAAG-AT------AGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAACACATA--TT---T--C--AAA--CAATA-----GAAGTAACT--AAAGAA--AAAAAATAATAATAATGGTAAGGGT-T---TT-C--CCCA-TGCGTAGCGAATCGTGC--AAAACC--AAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAG-TTA------TATACTC---T-----GTTTTCGTAGAAA---ATTTTA--ATTGTCATG----GAATAAGATGTGTA---------TA----------------------------A------T-------ATTTT----------TTTA--T-GA---TCTTGT---GA---GACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---TA-------A-------GCAGCTGACCATAC-AAAGAAG-ACGCGTTTTGATG-TATAAC-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAAT---GGTTTTTCATTCCTAG-----------------------TTTACGACCCTTTCATATTTTAT--ATGTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCCAC---------------------AA---TTTTCTT--TGTAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCAACATG-T-C------TGAGAGAGGA---TTTTCCT--TGTAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCG-TAA------TATT-TTCTCT-----GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---TA-------ATAGAAAAGCAGCTGACCATACA----AAG-GCGC-TTACAGTTCTGGAATTTTGACGTATTTGTATA-----TA
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTAT
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGAA---------TA---CTTT-------T-----T-------A------TTGAGTATCTTTTCAAAATCATGTTTAATT-TG-ATTGTTGT---AA---
gi|29 : GGGTTGACA---TCACTTTGTCAACATG-T-C------TGTGAGAAAA---TTTAACT--TGTAATCGCACT----
gi|3 : TGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAA---GGTTTTTGGTTCTGAG-----------------------GTTACGACCCTTTCATATTGAATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCCATATG-TACAGTGTATGTGCGAGAA---TTTTCCT--CGTAAT--CACT----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|4 : taca--AAATA-----GAAGTAA-T--AAACAA--AAAAA-TAAT------GGTACGAGT-TGTTTT-T--CTCT-GACGTAGCGAAT------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAG-TTA------CATA-T----------GTTTCCGTAGATATTTATTCTA--ATTGTCATG----GAATAAGGTGTGTACAGTGTATATA---CTTT-------T-----TTATGGTTA------T-------CATCTAAAAATCGTGTTTAATT-AG-ATTCTTGT---GA---GACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---TA-------------------------ATACAAAAGAAG-ACGC-TTAAAG-T-TATAGT-------TGTATG-ATG-----CAT--TTGTtatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|5 : acCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-TAAATTAAA---AAA--AAAAA--TGAA-TAAAAAACGTTACGGTA-----GAATT-TATAAGTAT------AAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAACATAT---TT---TAAT--AAA--AAATA-----GAACAAACA--AAACAA--AAAAA-TGAT--TA--GGT--GGGT-T---TT-TTCCCCGTTACGTACCGAATCGTGC----------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------gta
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgt-------TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA-----------------TTCCATTCCGAG-----------------------TTTACGACCCATTCATATTTTATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGAC-C------TGTGAAAGAATTTTTTTCCTAATGTAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAG-TAACTGTTATATA-TT---TTCTACGTTTTCGTAGAAATTTATTCTA--AATATAGTG----AAAT--GATTTGTA---------TA---CTTTATAATGGT-----T-------A------T-------CTTTTCGAAATCTTGTTTAATT-GG-ATTCCTGT---GA---GACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---TA-------------------------ATACAAAAGAAA-ACGC-TTATACTT-TATAG-----------TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : --AAATTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGTTAA------------------------TTTCGTAGAGATTTATTCTAATATTGTCATG----GAACAAGATATACA---------Ta
gi|8 : taTA---------TA---CTTT-------T-----TTATGGTTA------T-------CTTTTCAAAACCATGTTTAATTCGGCATTCTCACACAGACG-GACAGGGAgtatatatatggaacaagatatacatgtataatattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
gi|9 : taaaatttgaagtgcagaattatgttggtgtttgtcgtcatctaaaacaaagattttctttaacgcgatagttaatttcgtagagatttattctaatattgtcatggaacaagatatacatgtatatatatggaacaagatatacatgtataatattttaaaCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGA---AAATTAAAAACGATAATTAAAAA-CAT------A-----GAATCGTGTACGTTT------AA-T-GCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAACAAATGAAT-----------AA--AAAT------GAAATAgat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|31 ): AAAAAGATGGTATTACTTTTTATAGTTACCTTCAAAATCATGCTT
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 2222 444444444444 22222222222 111 1 11111111111111 111111 1111 111111 111 1111 111 666666666666666 2222222 77777777777777777777777777 1111 222222222 111 777777777777777777777777777777777777 111 222 111 66666666666666666 22222222222222222222222222222 2222222 1111 77777777777777777777777 111 2222222222 111 1111 33333333333 2222
lowQualScore : 5 5 77 5 2 888 66 0 1111 5 5 666666666666 5 0 99999999999 444 9 4 5 66 88888888888888 66 222222 9999 99 6 222222 44 8 444 3333 222 1 555555555555555 1 6 6 3333333 33333333333333333333333333 1 99 4444 000000000 000 888888888888888888888888888888888888 0 0 5 5 000 000 22 0 1 111 99999999999999999 1 1 7 3 6 6 88888888888888888888888888888 77 6 1111111 3 1 3333 5 44444444444444444444444 1 0 0 0 1 5 000 1 1 6666666666 111 99 0 2222 1 3 11111111111 888 0 0 4 8888 2 3333
lowQualScore : . . .. . . ... .. . .... . . ............ . . ........... ... . . . .. .............. .. ...... .... .. . ...... .. . ... .... ... . ............... . . . ....... .......................... . .. .... ......... ... .................................... . . . . ... ... .. . . ... ................. . . . . . . ............................. .. . ....... . . .... . ....................... . . . . . . ... . . .......... ... .. . .... . . ........... ... . . . .... . ....
lowQualScore : 7 7 99 0 0 888 99 1 1111 0 0 999999999999 0 5 99999999999 666 4 2 6 99 00000000000000 99 666666 3333 22 7 000000 44 0 000 0000 222 0 888888888888888 0 7 7 6666666 22222222222222222222222222 7 22 2222 000000000 000 000000000000000000000000000000000000 7 3 7 7 000 888 44 8 0 777 88888888888888888 0 0 3 2 7 7 22222222222222222222222222222 99 7 7777777 2 0 5555 0 00000000000000000000000 4 8 8 8 4 6 000 4 7 8888888888 777 22 7 1111 0 2 77777777777 888 1 4 4 1111 6 2222
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT-------T-----T-------A------T-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT-------T-----T-------A------T-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-TGAATTAAA---CAA--GAA-----TAA-CAAAAA-CGT-A----------GAGTT-TATAAGTAT------AAT--ATACGGTATT-GATGTTT-CTTAG-AAAAA--TGTATTTTCAAACATAC---ATGTAT--C--AAA--CATTATTTACAAAACAACTCTAAGCAATTAACAA-AAAC--TAATTATAAGGTT-T---TTAT--TTCG-TAC-TAA--AAT--------A------AAATTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTAAAA----GATTTTCTTT------------------------------------------GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGTA---------TA---CTTT-------T-----T-------ACGGTTAT-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATAGAA-------GCAACTGACTATACAAG-GAAA-ATGT-TTATAGTT------------------------------AT--TTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAAT---AGTTTTT--TT----------------------------TTTACGACGCATTCATATTTC-TACACGTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACCACATG-T-T------TGTGAGAGAA---TTTTTCC--TGTAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-TAAATAAAA---ATT--G------ATAA-TAAAAA-TGT------A-----GAATT-TATAAGTAT------AA--------GTA-TTAACG-TTCCTAAACAAAAC--TGTATTGTCAAACATAT---TT---T--A--AAATTAGATA-----GAat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATT-------TA--GAAAA----TA-TAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATT-ATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAACATAT---TT---T--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-TGAATTATATCTAAA--AAAAA--AAAA-TAAAAA-CGT------A-----GAATT-TATAAATAT-------ATT-ATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGTACAAT---A-------G-AGCTGACCATAC-AAAGAAGAACAT-TTATAGTT-TGAAGT-------TGTTTG---A-----T-T--TTGTTGGACAGGT-------TG-CGTAAAG----AATTTCAATTCCAGTTT
gi|15 : tgAACATGT-TAAATTCAA---AAA--GAAAA--T----TAAATA-TGT-A----------GAATT-TACATGTAT------G--T-ATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAACATAT---TT---T--CTAAAG--AAACA-----GATGTAA-T--AAACAA--AAAAG-TAAT--aatgaccccattcca
gi|16 : AAGCAATAACTCCAAC---AGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTTACGACTCTTTCATATTTTATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGgataggttt
gi|17 : GTAGAGATTTATTCT------GTCATG----AAATAAGATATATA---------TAATACTTT-------TATGATT-------A------C-------CTTTTCAAAACCATGTTTAATT-TG-ATTTTGGT---
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAACACAT---TT---TT-C--AAA--ACA----------GT---------TAA--GAA---------TAATGGCAGGAATAT---TT-T--TTCT-AACGTATCGAATCGTGCTTAA---CCAAAATTTGAAGTGCGGGATT-ATAAT
gi|19 : CT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatttttatttaataataaCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCATAAAAAAAA---AAA--AAAAA--AGAA-AAAAAA-CGA-A----ACCAGGGAACA-TGTAAG-AT------AGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAACACATA--TT---T--C--AAA--CAATA-----GAAGTAACT--AAAGAA--AAAAAATAATAATAATGGTAAGGGT-T---TT-C--CCCA-TGCGTAGCGAATCGTGC--AAAACC--AAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAG-TTA------TATACTC---T-----GTTTTCGTAGAAA---ATTTTA--ATTGTCATG----GAATAAGATGTGTA---------TA----------------------------A------T-------ATTTT----------TTTA--T-GA---TCTTGT---GA---GACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---TA-------A-------GCAGCTGACCATAC-AAAGAAG-ACGCGTTTTGATG-TATAAC-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAAT---GGTTTTTCATTCCTAG-----------------------TTTACGACCCTTTCATATTTTAT--ATGTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCCAC---------------------AA---TTTTCTT--TGTAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCAACATG-T-C------TGAGAGAGGA---TTTTCCT--TGTAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCG-TAA------TATT-TTCTCT-----GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---TA-------ATAGAAAAGCAGCTGACCATACA----AAG-GCGC-TTACAGTTCTGGAATTTTGACGTATTTGTATA-----TA
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTAT
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGAA---------TA---CTTT-------T-----T-------A------TTGAGTATCTTTTCAAAATCATGTTTAATT-TG-ATTGTTGT---AA---
gi|29 : GGGTTGACA---TCACTTTGTCAACATG-T-C------TGTGAGAAAA---TTTAACT--TGTAATCGCACT----
gi|3 : TGTA-----TAT----GTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAA---GGTTTTTGGTTCTGAG-----------------------GTTACGACCCTTTCATATTGAATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCCATATG-TACAGTGTATGTGCGAGAA---TTTTCCT--CGTAAT--CACT----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|4 : taca--AAATA-----GAAGTAA-T--AAACAA--AAAAA-TAAT------GGTACGAGT-TGTTTT-T--CTCT-GACGTAGCGAAT------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAG-TTA------CATA-T----------GTTTCCGTAGATATTTATTCTA--ATTGTCATG----GAATAAGGTGTGTACAGTGTATATA---CTTT-------T-----TTATGGTTA------T-------CATCTAAAAATCGTGTTTAATT-AG-ATTCTTGT---GA---GACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---TA-------------------------ATACAAAAGAAG-ACGC-TTAAAG-T-TATAGT-------TGTATG-ATG-----CAT--TTGTtatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|5 : acCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-TAAATTAAA---AAA--AAAAA--TGAA-TAAAAAACGTTACGGTA-----GAATT-TATAAGTAT------AAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAACATAT---TT---TAAT--AAA--AAATA-----GAACAAACA--AAACAA--AAAAA-TGAT--TA--GGT--GGGT-T---TT-TTCCCCGTTACGTACCGAATCGTGC----------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------gta
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgt-------TATCTATGTA-----TAT--TCTTTGAACA-GT-------TGTCATAAAGCAA-----------------TTCCATTCCGAG-----------------------TTTACGACCCATTCATATTTTATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGAC-C------TGTGAAAGAATTTTTTTCCTAATGTAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAG-TAACTGTTATATA-TT---TTCTACGTTTTCGTAGAAATTTATTCTA--AATATAGTG----AAAT--GATTTGTA---------TA---CTTTATAATGGT-----T-------A------T-------CTTTTCGAAATCTTGTTTAATT-GG-ATTCCTGT---GA---GACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---TA-------------------------ATACAAAAGAAA-ACGC-TTATACTT-TATAG-----------TTGTGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : --AAATTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGTTAA------------------------TTTCGTAGAGATTTATTCTAATATTGTCATG----GAACAAGATATACA---------Ta
gi|8 : taTA---------TA---CTTT-------T-----TTATGGTTA------T-------CTTTTCAAAACCATGTTTAATTCGGCATTCTCACACAGACG-GACAGGGAgtatatatatggaacaagatatacatgtataatattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
gi|9 : taaaatttgaagtgcagaattatgttggtgtttgtcgtcatctaaaacaaagattttctttaacgcgatagttaatttcgtagagatttattctaatattgtcatggaacaagatatacatgtatatatatggaacaagatatacatgtataatattttaaaCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGA---AAATTAAAAACGATAATTAAAAA-CAT------A-----GAATCGTGTACGTTT------AA-T-GCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAACAAATGAAT-----------AA--AAAT------GAAATAgat
blockSeqs : T C GT A A TCT TT CGAT T A AACCAGG G ATTGTAAATT TTT T C C AC TTTCTA TT A CT . A AATAAT AG A GTT TTC GTT T CGTGCTTAACCA G . A ACATGTA TAACTGTTATATATTTTCTAC G AT . CAGTGTATA ATA TTATTGAGTAT C C ACA CG TT G ATG ATAGAAAAGC G C A A A G CTGGAATTTTGACGTATTTGTATA GA G AAACTGT T T TTCC C GGTGTTTTTTTAAAATGTTTTAT T G A TTG T A TACAGTGTA TTT AA . G T . ATG C AGA T GGGT
blockSeqs : . . . . A . . AT . . TACGGTA . AGTTT TTG T T G . TTTAAT . A CA . . TAAT AA . . T TA G CGTGCAAAACC G . C A TAATATTTTCTCT A . . . . TTTATGGTTAT . . . . TT A . CAATAG G C A A . . TATAGTTGTGTAAAGCC . . . T C C C . T A A . T A ACC . . . G T . . . GGT A TTT
blockSeqs : . . . . C . . AA . . A . ATT TT T T C . TTTTC . A T . . TA AC . . C AT G CGTGC A . C A TTATATACTCT C . . . . ATAATGGTTAT . . . . AT A . AGC G C A A . . TATAACTATTTGTGTA . . . T C T G . T G A . G A TC . . . G T . . . GG A G
blockSeqs : . . . . A . . AG . . A . AAT TT T T C . ATTTC . A T . . . . . . T TG C . . . . G TTACATAT T . . . . TTTATGGTTAT . . . . AG A . . . . . A . . TATAGTTGTATGATG . . . . C A C . A A . . T G TC . . . G T . . . AA G G
blockSeqs : . . . . A . . TG . . A . AAT TT . G C . TTTA . A . . . . . . A TTAA A . . . . TATGATTAC . . . . T . . . . . . . . TGAAGTTGTTTGA . . . . . . . T . . . . . . . . . . GG C G
blockSeqs : . . . . G . . T . . A . AA CT . . C . TTTC . . . G . . AT . . . . . . . . . GG C A
blockSeqs : . . . . . . . A . GT TT . . . . TTTC . . . . . G T .
blockSeqs : GAAT . . .
blockSeqCons : AG** TTTC********** A***** T*** ** TA**** T*** CGTGC********** A****** TTATATACTCT*************** **** TTNATGGTTAT************************* *** AG*************** TATAGTTGTTTGTATA************* **** *********** G***
originalCons : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAA--ANAA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATAT---TT---T--C--AAA--AAATA-----GAAGTAACT--AAACAA--AAAAA-TAAT--TAATGGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC--AA---C--AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAG-TAA------TATA-TT---T-----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTT-------T-----T-------A------T-------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA-------A-------GCAGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGT-------TATTTGTGTA-----TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
finalCons : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-TAAATTAAA---AAA--GAAAAAG--AA-TAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAACATATTTTC----------AAA--AAATA-----GAAGTAAT---AAACAA--AAAAA-TAATTA----GGTAAGGGT-T---TTT---CTCG-TACGTANCGAATCGTGC----------AAATTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAGTTATATACTCT---------------GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------TA---CTTTTTNATGGTTAT-------------------------CTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TAAG---------------AGCTGACCATACAAAAGAAG-ACGC-TTATAGTTTATAGTTGTTTGTATA-------------TAT--TTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|31 ): AAAAAGATGGTATTACTTTTTATAGTTACCTTCAAAATCATGCTT
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT
Alignments
lowQualScore : 11111111 2222 444444444444 22222222222 111 1 111111111 111 11111 1111 333333 111 1111 111 555555555555555555555 2222222 66666666666666666666 1111 111111111 1 111 222 111 88888888888888888 1 222222222 2222222 1111 77777777777777777777777 111 2222222222 111 1111 33333333333 2222
lowQualScore : 5 5 77 5 88888888 0 888 3333 5 666666666666 5 0 99999999999 444 9 4 5 66 9999 777777777 222 4 55555 66 11 0000 666 2 88 333333 44 8 444 3333 222 1 222222222222222222222 1 6 6 3333333 00000000000000000000 1 99 4444 777777777 4 5 2 5 5 000 000 22 0 1 111 33333333333333333 1 1 5 6 6 99 3 8888 999999999 6 1111111 3 1 3333 5 44444444444444444444444 1 0 0 0 1 5 000 1 1 6666666666 111 99 0 2222 1 3 11111111111 888 0 0 4 8888 2 3333
lowQualScore : . . .. . ........ . ... .... . ............ . . ........... ... . . . .. .... ......... ... . ..... .. .. .... ... . .. ...... .. . ... .... ... . ..................... . . . ....... .................... . .. .... ......... . . . . . ... ... .. . . ... ................. . . . . . .. . .... ......... . ....... . . .... . ....................... . . . . . . ... . . .......... ... .. . .... . . ........... ... . . . .... . ....
lowQualScore : 7 7 99 0 11111111 1 888 6666 0 999999999999 0 5 99999999999 666 4 2 6 99 4444 888888888 222 4 88888 99 00 6666 888 5 33 888888 44 0 000 0000 222 0 666666666666666666666 0 7 7 6666666 55555555555555555555 7 22 2222 888888888 4 0 5 7 7 000 888 44 8 0 777 22222222222222222 0 0 5 7 7 88 3 3333 222222222 7 7777777 2 0 5555 0 00000000000000000000000 4 8 8 8 4 6 000 4 7 8888888888 777 22 7 1111 0 2 77777777777 888 1 4 4 1111 6 2222
consensus : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-T--------AAATTAAA---AAAGAAAA--AATAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAA----CAT---------AT---T-TT--C--AAA--AAATAG----AAGTAA-T-AAACAAAAAAA-TAAT--TA--GGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC-------AAA------TTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAGT------TATATACTCT----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------T-ACT-TTTT-ATGGTTATCTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA----A-------G----AGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGTTGTTTGTA-----TGTATTTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
Reference ( family-2639 ) : CGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-T--------AAATTAAA---AAAGAAAAAGAATAAAAA-CGT-A----A-----GAATT-TATAAGTAT------AATT-ATATGGTATTTGACGTTTTCTTAACAAAAA--TGTATTTTCAAA----CAT---------AT---T-TT--C--AAA--AAATAG----AAGTAA-T-AAACAAAAAAA-TAAT--TA--GGTAAGGGT-T---TT-T--CTCG-TACGTANCGAATCGTGC-------AAA------TTTGAAGTGCGGGATT-ATCATGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTTA------ACACGATAGT------TATATACTCT----GTTTTCGTAGAGATTTATTCTA--ATTGTCATG----GAATAAGATGTGTA---------T-ACT-TTTTNATGGTTATCTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GA---GACAGGGAATATATTACGAGATTTCCTATTCNACCAACGACAA---TA----A-------G----AGCTGACCATACAAAAGAAG-ACGC-TTATAGTT-TATAGTTGTTTGTA-----TATATTTGTTGAACA-GT-------TGTCGTAAAGCAATAACTCCAAT---AGTTTTTCATTCCGAG-----------------------TTTACGACCCTTTCATATTTTATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCACTTTGTCCACATG-T-C------TGTGAGAGAA---TTTTCCT--TGTAATCGCGCT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTNTTG---ACGCTTGCGTCAATTTGTTTCTTGTCCAT
gi|1 : GTGTGTTT-GTGC-GG--AGTTATTATGCAGATGT-T--------GAATTAAA---CAAGAA---TAACAAAAA-CGT-A----------GAGTT-TATAAGTAT------AAT--ATACGGTATT-GATGTTT-CTTAG-AAAAA--TGTATTTTCAAACATACATGTATCAAACAT---TATT--T--ACA--AAACAACTCTAAGCAA-T-TAACAAAAAC--TAAT--TA----TAAGGTT-T---TTAT--TTCG-TAC-TAA--AATA-----------AAA------TTTGAAGTGCGGGATTGATCAAGTTGGTGTTTGGCATCATCTAAAA----GATTTTCTTT-------------------------------------GTTTTCTTAGCGATTTATTCTA--TTTGCCATGCATGGAGTAAGATGTGTA---------T-ACT-TTTT-ACGGTTATCTTTTCAAAATCATGTTTAATT-GG-ATTCTTGT---GATGAGACAGGGAATATATTATGAAATATCTTATTATACAGACGAGAA---TATTATA-------GAAGCAACTGACTATAC-AAGGAAA-ATGT-TTATAGT-----------------------TATTTGTCGAACA-GT-------TGTTGTAAAGCAATAACTACAAT---AGTTTTT--TT----------------------------TTTACGACGCATTCATATTTC-TACACGTA-----------------------TATAGAGTTTGGACTGACA---TCACTTTTACCACATG-T-T------TGTGAGAGAA---TTTTTCC--TGTAATCACGTTATGCATGCCTTTCAATCTTATGCATTTAAAATCCACGTATTTTAGACATATTTTTAT---T-AAAGAAACAAACGTTTTGCGG-CC-GG-TTTTTT
gi|10 : ctaccggccgccaggatgcggtcggttatatatattatgaaagttttaagtagatCGTGTGT---GTGC-GG--AATTATTAAGAATGTGT-T--------AAATAAAA---ATTG----ATAATAAAAA-TGT------A-----GAATT-TATAAGTAT------AA--------GTA-TTAACG-TTCCTAAACAAAAC--TGTATTGTCAAA----CAT---------AT---T-TT--A--AAATTAGATAG----Aat
gi|11 : tccgccaggaggcggtcggttatacgatatgaaagttttaagtagtCGTGTGTTT-GTGC-GG--AGTTATTATGAACATGT-T--------AAATT-------TAGAAAA--TATAAAAA-CGT------A-----GAATT-TATATATATATTGTAAATT-ATATGGTA-TTGACA-ATTCTTAAGAAAAA--TGTATTTTCAAA----CAT---------AT---T-TT--C--A
gi|12 : ttaccggccgccaggaggcggtcggtgttttaagttatCGAGTGTTT-GTGC-GG--AGTTATTATAAACATGT-T--------GAATTATATCTAAAAAAAAAAAATAAAAA-CGT------A-----GAATT-TATAAATAT-------ATT-ATATGGTTTTTAA-G-TTTCTCAACAAAAA--TGTATTTTCAAA----CAT---------AT---T-TT--C--
gi|13 : cggtcggttatatgatatgaaagttttaagtaatAGAGTATGTGTTACGAGATTTCTT--TCGACCAATGACAAATGTACAATA-------G----AGCTGACCATAC-AAAGAAGAACAT-TTATAGTT-TGAAGTTGTTTG-A-----T---TTTGTTGGACAGGT-------TG-CGTAAAG----AATTTCAATTCCAGTTT
gi|15 : tgAACATGT-T--------AAATTCAA---AAAGAAAAT---TAAATA-TGT-A----------GAATT-TACATGTAT------G--T-ATAAGGTATT-AACGTTT-CTTAACAAAAAACT-TATTTTCAAA----CAT---------AT---T-TT--CTAAAG--AAACAG----ATGTAA-T-AAACAAAAAAG-TAATGATA--GGTaatgaccccattcca
gi|16 : AAGCAATAACTCCAAC---AGTTTTTCATTCCGAGGGTGTTTTTTTAAAATGTTTTATTTTACGACTCTTTCATATTTTATATACGTATAGGTGATTAAAGCGTCTACATTTATGGAACTTGGGCTAAAATTGTCAATTTGtt
gi|17 : GTAGAGATTTATTCT------GTCATG----AAATAAGATATATA---------T-AATACTTTTATGATTACCTTTTCAAAACCATGTTTAATT-TG-ATTTTGGT---
gi|18 : aataaaatattgaatgaatgaatTATCTTCAAA----CAC---------AT---T-TTT-C--AAA--ACA---------GT---T-AAG------AA-TAAT------GGCAGGAATAT---TT-T--TTCT-AACGTATCGAATCGTGCTTAACCAAAA------TTTGAAGTGCGGGATT-ATAAT
gi|19 : CT----ATGCCTTTCAATCTTGTTCATTTCAAATCC-----------ACAT-----------------AAACACATGGTTCACTG-TC----TTTTTT----ACG-TTGCGTCAAGTTGTT
gi|2 : gtgctcatttttatttaataataaCGTGTGTTTTGTGC-GAGTAGTTATTATGAACATGCAT--------AAAAAAAA---AAAAAAAAAGAAAAAAAA-CGA-A----ACCAGGGAACA-TGTAAG-AT------AGTTTATATTGTATTGGACGTTTTCTTAACCAAAA--GGTATTTGCAAA----CAC---------ATA--T-TT--C--AAA--CAATAG----AAGTAACT-AAAGAAAAAAAATAATAATAATGGTAAGGGT-T---TT-C--CCCA-TGCGTAGCGAATCGTGC-------AAAACCAAATTTGAAGTGCGGGATT-ATCATGGTGGTGTTTGGCATCATCTAAAACAAATATTTTCTTTA------ACACGATAGT------TATATACTCT----GTTTTCGTAGAAA---ATTTTA--ATTGTCATG----GAATAAGATGTGTA---------T-A--------------ATATTTT----------TTTA--T-GA---TCTTGT---GA---GACAAGGAATATATTACGAGATTTCCAATTCAACCAACGACAA---TA----A-------GC---AGCTGACCATAC-AAAGAAG-ACGCGTTTTGATG-TATAACTATTTGTG-----TATATTTGTTGAACA-GT-------TGTCGTAAAGCAATGACTCCAAT---GGTTTTTCATTCCTAG-----------------------TTTACGACCCTTTCATATTTTAT--ATGTATAGATGATTAAAGCATCTACGTTTATCGAGCTTGGACTGACA---TCACTTTGTCCAC---------------------AA---TTTTCTT--TGTAATCGCACT----ATGCCTTTCATTCTTGTTTATTTCAAATTC-----------ACATATTTTTGT---TAAAAGAAACAAATGGTTTGCGG-CC-GG-TTTATTG---ACGCTTGCGTCAGTTTGTTTCTTGTCAAT
gi|20 : GCTGACA---TCATGTTGTCAACATG-T-C------TGAGAGAGGA---TTTTCCT--TGTAATCGCGCT----ATGCCTCTCAATTTT-T---TTTCAAATCC-----------ACACATTTTtt
gi|21 : TTGATGTTTGACATAATCTAAAACAAAGATTTTCTTT-------ACAGGATCGTAA----TATTTTCTCT----GTTTACGTAGGCATTTAT
gi|22 : aatatttcctcTCATCCAACGACAA---TA----ATAGAAAAGC---AGCTGACCATACA----AAG-GCGC-TTACAGTTCTGGAAT--TTTG-A-----CGTATTTGT
gi|23 : AATAGCTTGCGG-CC-AA-TTTATTG---ACGCTTGCGTCAATTTGTTTCTTATatata
gi|24 : tatttttaaataccaatctATTTTTGT---TAAAAGAAACAAGTGGTTTGCAG-CCAGA-TTTGTT----ACGCTTGCGTCAATTTATTTCTTGTCCATgtttattggattg
gi|26 : cTTGT---TAAAA--ATCAAATGGTTTGTGG-CC-G------TTGGGTATGCTTGTGTCAATTTCTTTCATGTGCATaccttta
gi|27 : TTTTGTATGTAGAAGAA-----TGGTTTGCGA-CC-GG-TCTCTTTTT-ACGCTTGCGTAAATTTGTTTCTatcatattt
gi|28 : TAAGATGTGAA---------T-ACT-TTTTATTGAGTATCTTTTCAAAATCATGTTTAATT-TG-ATTGTTGT---AA---
gi|29 : GGGTTGACA---TCACTTTGTCAACATG-T-C------TGTGAGAAAA---TTTAACT--TGTAATCGCACT----
gi|3 : A-----TGTATATGTTGGACA-GTAAACTGTTGTCGTAAAGCAATAACTCCAAA---GGTTTTTGGTTCTGAG-----------------------GTTACGACCCTTTCATATTGAATACACGTATAGGTGATTAAAGCATCTACATTTATAGAGCTTGGGCTGACA---TCAGTTTGTCCATATG-TACAGTGTATGTGCGAGAA---TTTTCCT--CGTAAT--CACT----ATGGCTTTCAATCTTGTTCACTTCAAATCC-----------ACGTATTTTTGT---TAAAAGAAACAAATGG-TTGCGG-GC-GGTTTTCTTG---ACGCTTTCGTCAATTTGTTTCTTGT
gi|31 : tacAAAAAGATG-GTA---------TTACT-TTTT-ATAGTTACCTT--CAAAATCATGCTTtatacctttcgcacactcatgaaatcacgtacatgtattatgcggacatacatacaatgtatatatagtactggcagaatctacatttgtatttcgttttgtcaaaacatctcaatgccgttccgaaattttagtgaacgacctccatctcaatcagctgttgtccaattcgatattaaaattatggaataatccttagtgtggcataaaagttttgttttaaaggtgtgtcttggaatgaataacgattatttgattggtgatggtcatttgttaatgtaaagctttgaatgttcttcaaacaactcatattttcagcggcgagaatt
gi|4 : --AAATAG----AAGTAA-T-AAACAAAAAAA-TAAT------GGTACGAGT-TGTTTT-T--CTCT-GACGTAGCGAAT---------------------------------GATT-ATCATGTTGATGATTGGCATCATCTAAATCAAAGATTTTCTTTACATGTAACACGATAGT------TACATA---T----GTTTCCGTAGATATTTATTCTA--ATTGTCATG----GAATAAGGTGTGTACAGTGTATAT-ACT-TTTTTATGGTTATCATCTAAAAATCGTGTTTAATT-AG-ATTCTTGT---GA---GACAGGGAATATATTACGAGAATTCCTATTCAGCAAACTACTA---TA-------------------------ATACAAAAGAAG-ACGC-TTAAAG-T-TATAGTTGTATG-A-----TGCATTTGT
gi|5 : acCGTGTGTTT-GTGC-GG--AGTT-TGATGAATATGT-T--------AAATTAAA---AAAAAAAATGAATAAAAAACGTTACGGTA-----GAATT-TATAAGTAT------AAT--ATATGGTACT-GACGTTT-CTTAACAAAAA--TGTATTTTCAAA----CAT---------AT---T-TTAAT--AAA--AAATAG----AACAAA-CAAAACAAAAAAA-TGAT--TA--GGT--GGGT-T---TT-TTCCCCGTTACGTACCGAATCGTGC-------------------------------T-A--GTGTTGGTGTTTGGCATCATCTAAAACAAAGATTTTCTTCA------gta
gi|6 : taccgaccgccaggagaaggtcggttgtttgatctgaaagttttaagttgtTATCTATG-----TATATTCTTTGAACA-GT-------TGTCATAAAGCAA-----------------TTCCATTCCGAG-----------------------TTTACGACCCATTCATATTTTATACAGGTATAGATGATT-AAGCATCTATATTTATAGAGATTAGGCTGACA---TTAC-TTGTCCTCGTGAC-C------TGTGAAAGAATTTTTTTCCTAATGTAATCACACT----AT-CCTTTCAATCTTGTTTACTTCAAACCC-----------ACATATTTTTGT---TAAATGAAACAAATGGTTTGCGGCCC-GG-TAATTTA---ACGCTTGTGT
gi|7 : taatgAAGATTTTCTTTG------ACACGACAGTAACTGTTATATATTTTCTACGTTTTCGTAGAAATTTATTCTA--AATATAGTG----AAAT--GATTTGTA---------T-ACT-TTATAATGGTTATCTTTTCGAAATCTTGTTTAATT-GG-ATTCCTGT---GA---GACAAAGAATATATTACGAGAAGTCCTATTCTATCAACGACAA---TA-------------------------ATACAAAAGAAA-ACGC-TTATACTT-TATAGTTG--TGTAAAGCCTGTGATTGGTGAA-------------GTCATAAA
gi|8 : -------AAA------TTTGAAGTGCAGAATT-AT---GTTGGTGTTTGTCGTCATCTAAAACAAAGATTTTCTTTA------ACGCGATAGT------TA-A------------TTTCGTAGAGATTTATTCTAATATTGTCATG----GAACAAGATATACA---------T-a
gi|8 : taTA---------T-ACT-TTTTTATGGTTATCTTTTCAAAACCATGTTTAATTCGGCATTCTCACACAGACG-GACAGGGAgtatatatatggaacaagatatacatgtataatattttaaatatacttttttatggttatcttttcaaaaccatgtttaattcggcattctcacacagacggacagggagat
gi|9 : taaaatttgaagtgcagaattatgttggtgtttgtcgtcatctaaaacaaagattttctttaacgcgatagttaatttcgtagagatttattctaatattgtcatggaacaagatatacatgtatatatatggaacaagatatacatgtataatattttaaaCGTGTGTTT-GCCCCGG--AGTTATTATGAGCATTT-TCATTTGGAAAATTAAA---AACGATA---ATTAAAAA-CAT------A-----GAATCGTGTACGTTT------AA-T-GCATGGTA-TTGTCGTTTGCTTAG-AGAAA--TGTATTTTCAAA----CAA---------ATGAAT---------AA--AAAT-G----AAATAgat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTAGCGGCCGCCAGGAGGCGATCGGGTATATGGCAAGAAAGTGTTGAAGAGGCTATGCGTTCATGCTGGATTGGTATATTGAAAAATCGTAGAAACCTATCTTTTACAGATGCAATACATTTTAATAGCATTAATGTTTCCTAACAAAAA
Unaligned ( gi|25 ): GCTTTGAATGTTCTTTAAACAACCCATATCAAAATGGGCTTTTTCAGCGGCGAGAATTTTTAAAATGGATGCTAGA
Unaligned ( gi|30 ): TACCGGCCGCCAGGAGGCGCTCTGTTATATGTAGTGTGTTTGTACGGA
Unaligned ( gi|32 ): GCTATTTCAGCGGCTACAATTTTTACAATGGATGCTAGAGGT