lowQualScore : 111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111
lowQualScore : 000000000000000 33 77777777777777777777777777 22222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33333 1 22 111 8888888888888888 44 666666666666666666666666666666666666666666666 333 222222 44444444444 2222222 333333 2 55 111 4 6666666666666 3 3 11 555555555 222 4 2 1 555555555555555 444444 1 1 1 3333 2222 111 11 77777777777777777777777777 1 1 3 1 4 1 33 1 1 777777777 11 11 1 1 11 22 1 1 2 1 2 33 111 22 22222222222222222222222 1 1 1 2 1 1 11 1 11 22 1 22 11 2222 11 11 77777777777777777777 22
lowQualScore : 444444444444444 3 8 00 66666666666666666666666666 55555 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 00000 0 88 222 4444444444444444 1 66 22 666666666666666666666666666666666666666666666 6 111 444444 3 00000000000 0 2222222 777777 2 3 33 888 77 0 1111111111111 0 8 3 3 99 2 555555555 888 0 7 0 444444444444444 6 888888 6 5 5 5 7777 1111 444 6 88 7 22222222222222222222222222 2 2 0 0 0 3 3 0 5 88 5 6 7 2 666666666 6 88 2 88 3 7 3 44 55 3 3 6 3 2 0 5 6 0 55 6 777 11 66666666666666666666666 3 3 6 3 3 6 7 7 3 55 0 55 0 88 999 66 33 5 0 00 11 8 8 8 6 77 8888 6 99 6 6 6 6 33 88 3 0 22222222222222222222 6 0 6 3 0 00 3 0 8 0 6
lowQualScore : ............... . . .. .......................... ..... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ..... . .. ... ................ . .. .. ............................................. . ... ...... . ........... . ....... ...... . . .. ... .. . ............. . . . . .. . ......... ... . . . ............... . ...... . . . . .... .... ... . .. . .......................... . . . . . . . . . .. . . . . ......... . .. . .. . . . .. .. . . . . . . . . . .. . ... .. ....................... . . . . . . . . . .. . .. . .. ... .. .. . . .. .. . . . . .. .... . .. . . . . .. .. . . .................... . . . . . .. . . . . .
lowQualScore : 000000000000000 0 8 00 11111111111111111111111111 00000 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 22222 0 22 444 4444444444444444 4 44 22 222222222222222222222222222222222222222222222 7 777 222222 8 88888888888 8 8888888 222222 8 4 22 000 22 0 8888888888888 0 8 8 2 88 5 555555555 000 0 5 0 555555555555555 0 000000 0 0 0 0 5555 2222 444 0 33 3 44444444444444444444444444 0 5 0 0 0 2 3 0 0 77 0 7 3 3 000000000 0 33 5 33 3 3 3 00 33 3 3 0 0 5 0 5 0 0 00 7 777 77 00000000000000000000000 3 3 7 3 7 7 0 3 3 00 0 22 8 88 222 22 22 4 8 88 00 0 0 0 7 33 0000 7 22 7 7 7 7 88 33 0 8 33333333333333333333 6 8 0 2 2 88 5 8 2 8 0
consensus : GAATTAAA---TCG-GCAAA---CAANTACAAAGTC-TCATAATC-AC--AAAGGGA--TATGAT-GATG-ATATCTGA-----AAGTGAAGTTTTAAAA-TGTTTCTTTTGA----ACA-----TTTTT--TGTGATATTGTGTTATATNTCAT----G-----TG-GGCTTGGATATTTTTC-TAAA-TTGTTTA-T-------TC----CGG---TGCT--TCAGTTG-AGCCATTT-GGC-CCAT-G--GATCTC-TT-GATTT--AACCT-CA-GACGACAGAC-AGATTTTTGGA-CAGAC---TATTTAAAGAGAT-CGTCAAA-TGTTTT-AGAAAGGGTGCGCAATATGC--GAAATAAAAG-CTATTAAA-AATAATGA--ATATTC--AAAAATGTTTTTATTAAAATATATGATGACTCAA---------AAAACAAAACNAAT-NAAAAGTACAT-GCA-TAAA---GT-CA--TAAACAAAAAGCT-GCTCATTT-CCTCGT-AATT-ACGGCTGATCNCAACGTNCCGGTTGA-T--CACACAG----TGTGAAGAG-ACT--ATATNTTTATTNTTAA-CA--A-A-CATTT-CGAAAACAACATC--TTGGTAAA--GG-TTCACTTGCCA-ATGTTT----ACT--A--ATGNGT-AGAG--A-ACATG--CTNCTTGGGNGTGAACAG-TNAAATTTAAAA-CATA-CA-CAGT-TAATGATGTTA-GTTACCTCATGTGCG-TTAAG--CAT---------------TACCTTG--TACATAATGAA-A--AAGAA---CAC--------AAAAAATATCATTCA-A---TTATTA-ACAAAATAT--GAAAAAA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTCCTA-C-GTTATGAGAATA-GAAACAA--CGGGAAAATATCGACATGTTCATTG-A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACA-TC-GGCA-TGACAAAATTAATTGT-GTA-AT-GATGCATCACC------TACATT---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTCTTT----TT--TTTTT--ACTTTAGATGTAAATAATGA--TTT-AATCAAAATGATT--CAA-ACCTATCA-TATCTTGAAGAAA-GGGGAATGAGAAAG-CTTGT-TAGATTAT--GCCAAACTGCATGCTTTAAGAAATACTAGTCTGTTTTGGAAGGGTT----TA-TATTTTTCCTAT--ACNAA--TTTT-TTCGCAATTCAAA-CCA-TCTG-TTGTCAATCTCTGA-CAGAAATAACCA-GGCATNGCACCAGTTTGNAGATCGAAGTTATCCGTTTTGGTTCAAATGATTAGTCCACTACACCCTACAAGAAACTCG-A-AGTAA-TCTTCTAGCGCTTACTGG-CGCGGA--TG-AG---AT-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTG-CAACAATGTTCCGAAAAAGTTTATTTACATCACGTAG-ATAA-TACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAGG-TAACAAAGTTG-CCTCATGG-TCAA-TAC-T-GCCA-ATGT-CACC--NGTGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTTTTCATGGTTAAC-TCTGGGCA-AGTTTCTTGGCTTTTTAACCTTTACAAATTACCCTTAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Reference ( gi|1 ) : GAATTAAACCATCGCGCAAAGCCCAATTACAAACTCCTCATAATCCACCAAAGGGGACTTATAATTGATGCATATCTGA-----AAGT-----TTTAAAAGTGTTTTCATTGA----A-------TTTTT--TG----ATTGTG---------------G-----TG-CGCTTGGATATCTTT-----------------------TC----CGG---TGCT--TCAGTTGCAGCCATT--GGC-CCAT-G--GATCTC-TT-GATTCTCACCCT-CA-GACG-CAGAC-AAATGTTTGGAGCAGACC-TTCTTTCAATAGAT-CGTCATA-TGTTTTTATAAAGTGTGCGCAATATGC-CGAAATAAAAAACTATTAAA-AATGA-GAGAATATTCTCAAAAA-GTTTTTATTAAAATATATAATGACTTAAGAGTGACATAAAACAAAACAAAT-CAAAAGTACATAACAGTAAAAAAGTACGATTAAACAAAAAGCT-GCTCATTC-CTTCGA-AATTCACGGCTGATCACAGCG-ACCAGT-GAAT--CATACAG----TGTAAAGAGCACT--ATATTTTTATTTTTAATCA--AGACCATTTCCAACAACAACATCCCTCGTTAAA--G--TTCA-TTGC---ATATTTTTAGACTTCACTATGAGT-AGAAGAA-ACATG-ACTTCCTGGGAGT-AACAG-TGAAATTTAAAATCCTA-CA-CAGTCTAATGATGTTA-CTT-CCTCCTGTGCGCTTAAG--CAT---------------TACCTTGCTTACATAATGACCA--AAGAA---CAC--------AAAAAATATCCTTCACG---TTATTA-ACAAAATA---GAAAAAACTA--ATTAGGA-----A-----GCATTGTTATTGAAAATATTTGTC-A-GTTATGAGAACAAGAAACAATCCGGAAAAATGTCAGCATGT-CATTG-ACAATTACAAGTAATA-ATTCTTTTCTTCAACTTTAAAAGGGACTCGTTTT-AAAAAGGCACA-T--GACACTGACAAAATTAATTGTCGTACAT-GATGCATCACC------TAC------TTGGCGACAACAGAGAATAGAGCAAGACAAGAAACTGGATATATACTCTTT----TT--CTCTT--ACTTTAGATGTAAATAATGGACCTTCAATCAAAA-AATTTACAATACCCATCA-TATCTTGAAGAAA-GGGGA-TGAGAAAG-CTTGTATATATTATTCGCCAACCTGCATGCTTTAAGAAATACTAGTCTGTTTTGGAAAGGTT----T----TTTTTCTTAT--ACCAA--TTTT-TTCGCAATTCAAA-CCA-CCTC-TTGTCAATCTCTGA-CAGAAATAACCA-GACATTGCACCAGTTTGGAGATCGAAGT-ATCCGTTTTAGTTCGA-TGATTAGTCCACTAC-CCCTACCAGAAACTCG-A-AGTAA-ACTTCTAGCGCTTACTGGTTTTGGAATTGCAGGCAATTCATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATGTTCCGAAAAAGTTTATATACATCACGTAG-ATAATTACGGGTTTC-TGGGAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAGT-TAACAAAGTTG-TCTCATGA-TCAA-TAC-T-GCCA-ATGC-CACC--TATGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCATGACTAC--TGTTTTCATAGTTAAC-TATGGGCATAGTTTCTTGGCTTTACAACCTTTACAAATTACCCTCTGCATTTAAGTTAGATATAGAAAATACATCACACATTT
gi|18 : GAATTAAA---TCG-GCAAA---CAATTACAAACT-CTCATAATC
gi|9 : ctctttAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATGAT-GATG-ATATCTGA-----AAGTGAAGTTTTAAAA-TGTTTCTTTTGA----ACA-----TTTTT--TATGATATTGTTATATAAT--------G-----TG-GGCTTGGATATTTTCCCTAAACTTGTTTATTGTTTAGATC----TGC---TGCT---CAGTTG-AGTTATTT-GGC-CGAT-G--GATCTC-TT-GATTT--AACCT-CA-GAC--------AGATTTTTGGA-CAGAC---TATTTAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC--GAAATAAAA--CTATTAAA-AATAATGA---TATTC--AAAAATGTTTTTATTAAAATATATaca
gi|8 : ctttaAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATCGATGATG-ATATCTGA-----AAGTGAAGTTTTAAAA-TGTTTCTTTTGA----ACA-----TTTTT--TATGATATTGTGTATAATGTC------G-----TGGCGCTTGGATATTT
gi|14 : ctttaAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AT--AAAGGGA--TATGAT-GATG-ATATCTGAAAGTGAAGT-----TTTAAAA-TATTTGTTTTGAAAATA-------TTTTA--TG----ATTTTGTTATATATAAT----G-----TG-GGCTTGGATAT-TTT-----------------------TC----Cccctaacttgtattatatctgtttagtttgtattcatgtagatctgtgcctagttgagttatttgggccgatggatctctttgatttaacctcagacagatttttggacagactatttaaaagattgtcaaatgttttagaaagggtgcaatatgcgaaataaaactattaaaaataatgatattcaaaaatgtttttattaaaatatat
gi|7 : tttatcaCAAAGGGA---TATGAT-GATG-ATACCTGA-----AAGTGAAGTTTTAAAA-TGTTTCTTTTGA----ACATGTTTTTTTTAATG----ATTTTGTTATATTACATGTATG-----TG-GGCTTGGATATTTTTCTTAAATTTGTTTAGTA------TT----TGGATCTGCTGCTCAGTTG-AGCCATTT-GGC-CCAT-G--GA---C-TT-GATTT--AACCT-CA-GATGACAGAC-GGATTTTTGG-TCAGAC---TATTT-AAGAGAT-CGTCAAA-TGTTTT---AGAATGGGTGCAGTATACAC--AATAAAAG--TGTTAGA-AATAATGA---TATTC--AAAAATGTTTTTATTAAAATAT---ATGACTCAA-------ATAAAA-AGAACCG---CAAAATTATA--------------------TAAACAAAAAGCT-GCTCATTT-CCTta
gi|5 : ----ATTGTG---------------ACCCACTG-C-CTTTGTTTTCTTT-----------------------CCAATTCTG---TGCTC-TGATTTG--ACCATT--GTCTCCAT-GCAAACTTC-T---ATT---AACCT-CAAGACGACAGACCAGAT-TTTGAAG---ACTATTCT------AGAT-CGTCA-A-TGTTT--AGAAAG-----GCAATATGT--GAAATAAATGACACTTAAATAATGATGTAAACAT------AAC-ATGTTTATTAACATAT-TA--GATTCAA------CTAAAAACGAAA--AAT-GCAAAGTACATA----TAA-----------TAA--------CTGGTTCATTT-TATCGCTAAT--AC-GCTGATCTCAAAT-TTTAGT----T--GACAAAG----TGTGAAAAGGAGTGAATATGCTTATTACT--TCAGCACACTATT--CAAAAACAA-ATCC--TGGTAAACTA--TTCACTTGCTA-ATGTTT----ACT---CTCTGCGTCAGAACAACACATG--CTTCATTGGGGTAAACAG-TTAAATACAAAACAATAGCATCAGTTAAATG-TGTTA-GTT-ACTCATGTGCGTTTAAT--GATACCAGACCACTAATATACCTAGTCTACATAATTAACAATAAAGA---CACCATCTACGAGCAAAT---CGTAACAAACATATTACCCAAAATGATTGAAAAAAA-A--ATTGGAATCTGTA-----GC-TT-TTGATGAAAAGATTCCTA-C-GTTATGAGAATAGAGCACAA--CGGGCAAAT
gi|2 : -----------------------TC----TGC---TGCA--TCAGTTGAAGCCATTT-GGC-CCATTG--GATCTCATT-GATTTTAACCCAACA-GACG-CAGAC-AGATTGCTGGA-CAGAC---TATTT-AAGAAATTCGTGAAAATGGTTT-AGAAGG-GT-TGCAATATGT--GAAATAAAA---TATTAAA-AA-GA-GTTGATGTTTAAAAAAA-GTTCTTATTAAT-TATATGATCA------AATGA---AAAACAAAA-AAATGCAAAAGT-----ACA-TAAA----------TAAAT-----GCT-GTTCATTCTCCTCGT-AATT-ACGGCTGCTATCAATG-TTC--T-AGATTGCACACAAAAGATGTGAA-AGC-CT--ATATGT--ATTATTAA-CA--A---CATTTTCAA-AACAACATCG---GTTAAA--AGATTCACTTGCCAAATGTTTATA-ATTTCA--ATGCGT-AGAG--A-ACAGGCGCTTC--GGGTG--AACAGGTTAAATC--AAA----A-CA-TAGAATGATGATGTTA-GTTACCTCATGTGGTCCTAAGTACATGTA------------TACCTAG--TACATAATAAA-A--AAGAAACCCCC--------AAAAAAAATCATTCA--------TTA-ACAAAATAT--GAAAATAATAGTATT-GTT-----A-----GCATT-TTGATGAAAATATTCTTCTACGTTTTGAGAATTAGAAACAA--CGGGAAATAATCAACATGTTCATTGCAAAAGT-CAAG-AATA-ATTATTTTCTTCCAGTTTAAA-GAGACTCGTTTTTAAAAAGG-ACA-TCTGGCA-TGACAAAAT-AATTGT-GTACAAAGATGCATCACC------TACATTAC-TTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTCTTT----TT--TTTTTTTACTTTAGATGTAA-TAATGA--TTTAAATCAAAA-TGT---CAAAACTTAT-A-TATCTTGAAGAAA-AAGAAATGAGAA-G-CTTGT-TAGATTAT--GCCAAACTGCATGCTGTAAGAAATACTAGT-TGTTT-GGAA--GTT----TATTATTTTTCCTATTTACAAA--TTTT-T-CGCAATTCAAAACCAATCTG-TTGTTCATCTCTGA-CAGAAATAACCACGGCATGGCATCAGTTTGTAGATCAAAGTTATCCGTTT-GGTTCAAATGATTAGTCCACTA--CCCTACAAGAAACTCG-ACAGTAA-TCTTCTAGCGCTTAC-----TTGG---TG-AG---AT--ATTG-TACGATATGTACCAACTTGGGTAATGCAGTTATTG-CAACAATGTT-CAAAAAAGTTTATTTACATT-CATAGTATA--TACGGGTTTCTTGAAAATAT-TCAATGGC-TAATGATACAATCTTTTCCTT-ATATTC--ACAGG-TAAC-AAGTTG--CT-ATGAGTCAA-TAC-TGGCCA-ATGT-CACC--GGTGCA-TTCGGGGTTT-CGCTTTTCAGCCACT-TCAGTACTACTGTGTTTTCATGGTTAACTTTTGGGC-----------GCTTTTTAACCTTTACAATTTACCCTTAGCATTTAAGCTAAATATAGAAAATACATCACACGTTT
gi|8 : tcaG---TGCC--T-AGTTG-AGTTATTTGGGC-CGAT-G--GATCTC-TTTGATTT--AACCT-CA-GAC--------AGATTTTTGGA-CAGAC---TATTTAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC--GAAATAAAA--CTATTAAA-AATAATGA---TATTC--AAAAATGTTTTTATTAAAATATAT
gi|10 : ctttaaattaaatcggcaaacaagtacaaagtctcataatcacaaagggatatcgatgatgatatctgaaagtgaagttttaaaatgtttcttttgaacattttttatgatattgtgtataatgtcgtggcgcttggatatttccctaacttgtattatatctgtttagtttgtattcatgtagatctCGAAT-GAAAAAAACATTGCAATA-----GTGCA--TAAACAAAAA-CT-GCTCATTT-CCTCGT-AATT-ACGGCTGATCA--ACGTACCGGTTGA----CA-ACAT----TGTGAAGAG-ACT--AAATTTTT--TTTTAAGTA------CATTT--GAAAACAACATC--TTGGTAAA--GG-TTTA-TTGC---A--------------A--ATGAGT-AGAG--A-ATATG--CTGCTTGGGATG-AACAG-TGAA--TTAAAA-CATA-CA--AGT--AATGATGTTA-GTCACCTCATGTGC--TTAAG--TAT----------------ACCTTG--TACATAA-GAAGA--AAGAA----AC--------AAAAAAT--CATTCA-A---TTATTA-ACAAAATA---TGAAAAACTA--
gi|4 : AAAAGTACA--TAAACAAAATGCT-GCTCATTT-CCTCGT-AATT-ACGGCTGATCA--ACGTACCAGTTGA----CA-ACAG----TGTGAAGAG-ACT--ATGTTTTTATTT------A--AGAACATTT--GAGAACAACATC--TTGGTAAA--GG-TTTA-TCGC---AT------------------GAGT-AGAG--A-ATATG--CTGCTTGGG-GTGAACAG-TGAA--TTAAAA-CATA-CA--AGT--AATGATGTTA-GTTACCTCATGTGC--TTAAG--TAT----------------ACCTTG--TACATAATAAG-A--AAGAA----AC--------AAAAAATA--ATTCA--------TTA-ACAAAATAT--GAAAAA--TA--ATTAGGA-----------TCATTGTGAT-GAAAATATTCGTA-C-GTTATGAGAATA-GAAACAA--CGGAAAA-TATCAACATGTTCATCG-A-GATT-CAAG-AATATATTCTTTTCTTCAG-TTTAAAAGGGACTCGTTT--AAAAAGGCACA-TT-GGC-TTGACAAA--TAATTGT-GTA-AT-GGTGTATCGCC------TAC------TAAGCAACAA--GGAAACACAGGAACACAAGAAACTA-ATATAAACTCTTTATTTTT--CTTTT--ACTTTAGATGTAAATAATG-ACTTGCA-TCAAAATGAT---CAA-ACCTATCA-TATCTTGAAGAAA-GGGGAATGAGAAAG-CTTGT-TAGATTAT--GCCAAACTGCATGCTTTAAGAAATACTAGTCTGTTTTGGAAGGCTTATTAT----TTTTTCCTAT--gaaaaaatgtgatg
gi|15 : aaaaatgcTAATGATGTTAGTTT-CCTCCTGTGCG-TTAAG--CAT----------------ACCTTG--TACATAATGAA-A--AAGAA----AC--------AAAAAATAT--TTCA-G---TTATTA-ACAAAATA---GAAAAAA-TA--ATTAGGA-----A-----GCATTGTGA-TGAAcaac
gi|11 : acaag---TTATTA-ACAAAATAT--GAAAAA--TG--ATTAGGA-----ATTGTAGCAT-ATTGATGAAAATATTTCTA-C-GTTATGAGAACA-GAAACAA--CGGGAAA-TATCTACATGTTCATTG-A-GGTT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACATT--GGCA-TGACAAAA-TAATTGT-GTA-AT-GATGCATCACCTACATGTAC------TTAGCGACA--AGGAAACACAGGAACACAAGAAAGT-GATATATACTCTTA----TT--
gi|3 : atcaaTATTTCTG-C-GTTATGAGAATA-GAAACAAC---GAGGAATATCGACATGTTCATTG-A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTA-AAAATGGCACA-TT-GGCA-TGACAAA-TTAATTGT-GTA-AT-GATGCATCACC------TACATTTACTTAGCGACAA--GGAAACACAGGAACACAAGAAGT--GATATATACTCTCT----TTATTTTTT--ACTTTATATATAAATAATGA--CTT-AATCAAACTGATT--CAA-ACTTATCAGTATCTTGAAAAAA-AGAGAACGAGAAAGGCTTGT-TAGATTAATGCCCAAACTTCATGGTTTAAGAAATACTAGTCTGTTTTTGGAAGGTT----TAATATTTTCCCTAT--ACCAAATTTTTGTTCGTAATTCAAA-ACA-CCTG-TTGTCAATCTCTGA-CAGAAAGAACCA-GGC
gi|19 : AA-AATTATCAA-ACCCATCA-TATCTTGAAGAAAGGGGGA-TGAGAAAcaacaaaaaactcgaagtaatcttctagcacttactgggcgtggacattgtacgatatgtacaacatgggtaatgcagtactgtcaacaatgttccgaaaacgtttatttacatcaagtagataattacggctttctggaaacatgtcaatggcataatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtaaccggtgcattcgggttcgccttcagcactgtcagtactactgtgttttcatggttaactctgggcatagtttcttggctttttaacctgtacaattaccctcagcattttagttaaacatagaaaataaatcacacgttt
gi|6 : AA--ATTT-TTCGCCAATCAAA-CCA-TCTTGTTGTCAATCTCTGAGCAGAAATAGCCA-GGCATTGCACCAGTTTGGAGATCGAAGT-ATCCGTTTTAGTTCAA-TGATTAGTCCACTACACCCTACCAGAAACTCGAA-AGTAATACTTCTAGCGCCTACTGG-CGCGGAATTGCAGCAAATACATTGTTACGATATTTA-CAACTT-GGTAATGCAG-TACTA-CAACAATGTTCCGAAAAAGTTTATTTACATCACGTAG-ATAAATACGGGTTTC-TGGG-ACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG--TAACAAAGTTG-CCTCATTG-TCAATTAC-T-GCCA-ATGT-CACCGGT-TGCATTTCGGA--TT-CGC-C-TCAG-CACTGTCATTACTAC--TGTTTTCATGGT-----TATGCG--------------TTTACAACCTTTACAAAT
gi|3 : CCAACAAAAAACTCG-A-AGTAA-TCTTCTAGCACTTACTGGGCGTGGA-------------CATTG-TACGATATGTA-CAACATGGGTAATGCAG-TACTGTCAACAATGTTCCGAAAACGTTTATTTACATCAAGTAG-ATAATTACGGCTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTC-ACAGG-TAAC-AAGTTG-CCTCATGG-TCAA-TAC-T-GCCA-ATGT-AACC--GGTGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTACTGTGTTTTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTTTAACCTGTAC-AATTACCCTCAGCATTTTAGTTAAACATAGAAAATAAATCACACGTTTagaaaatacatacacgttt
gi|12 : tatttctgcgttatgagaatagaaacaacgaggaatatcgacatgttcattgagattcaagaatatattattttcttcaatttaaaagggactcgtttaaaaatggcacattggcatgacaaattaattgtgtaatgatgcatcacctacatttacttagcgacaaggaaacacaggaacacaagaagtgatatatactctctttattttttactttatatataaataatgacttaatcaaactgattcaaacttatcagtatcttgaaaaaaagagaacgagaaaggcttgttagattaatgcccaaacttcatggtttaagaaatactagtctgtttttggaaggtttaatattttccctataccaaatttttgttcgtaattcaaaacacctgttgtcaatctctgacagaaagaaccaggTACGGGTTTC-TGGAAACATGTCAATGGCATGATGG-ATAATCTTTTCC-C-ATATTTCA-CAGG-TAACAA-GTTG-CCTCATGG-TCAA-TAC-T-GCCA-ATGT-CACC--GGTGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTGG--AGTTTT
gi|13 : ACATGTCAGTGGCATAATGG--TAATCAGTTCC-CAATATTTC-ACAGTGTAAACAAGTTGCCCTCATGG-TCAA-TACTT-GCCACATTCTCACCA-TGTGCA-TTCGGG--TTCCGC-CTTCAG-CACT----TGACTGT--TGTT----CAGTTAAC-TCT-GGCACAGTTTCacgaagaagcttacttttacaatcgacggctgacttttacaatat
gi|16 : aaat-ATAC-CACG--TA---A-TTC------T-C-T-CTCTAG-CACTGTCATTACTAC--TGTTTTCATGGTTA-------------------TGGCTTTACAACCTTTACAAAT-------------------------AGAAAATACATCACACGTTT
gi|17 : cacTCTTGGCTTTTTAACCTTTACAA-TTACCTTTAGCATTTAAGTTAAATATAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 111 111 11 1111 11 444444444 11111111111111111111111111111111111111111111111111111111111 222 111 11 2222 222 333 11111 11 777777777777777777777777777777777777777777777777777777777777777 11 1 33333 1111 1 11 11 3333333 11 111 11 11 2 11111111111111111111111111111 22 2 1111 33333333 22222 6666666666666666 2222 444444444 22222 111 11 33333333333 1 11 1 11 11 11 555555555 11 2222 1111 11 11 111 111 11111 1 1 11 1 1 22222222222 1111 11 1 1 1 1 1 11 111 2 111 1 9999999999999999999999999 1 1 1 2 1 1111 1 11 1 5555555555555555555 2222222222
lowQualScore : 444 8 444 1 8 8 99 11 8 8 8 8 1111 55 88 00 88 5 222222222 8 44444444444444444444444444444444444444444444444444444444444 111 2 6 6 7 6 6 6 99 1 6 6 777 99 6 77 6 6 99 1111 6 6 3 666 6 111 6 6 99999 99 00 3 0 777777777777777777777777777777777777777777777777777777777777777 00 6 6 8 88 6 3 11 2 8 00000 7777 3 6 11 1 0 0 8 11 0000000 66 8 444 11 44 0 66666666666666666666666666666 1 8 22 8 8 11 8 4 3 8 1 4444 8 8 8 33333333 3 00000 99 0000000000000000 99 99 2 0000 6 333333333 99999 5 44444 5 222 5 44 77 1 22222222222 9 99 6 6 6 99 1 1 4 0 11 8 8 8 0 0 8 44 77 8 0 777 8 99 333333333 11 0000 7777 11 33 3 777 111 0 88888 8 8 8 0 88 0 0 33 0 2 0 3 44444444444 8888 1 33 3 0 0 0 0 0 1 1 44 88 000 3 3 111 0 2 5555555555555555555555555 0 0 2 0 0 2 3 0 2222 8 8 3 6 3 00 6 5 6 6 6 6 6 6 6 77 6 6 99 6 5 5 4 3 77 77 5 2222222222222222222 4 0000000000 3 1 222
lowQualScore : ... . ... . . . .. .. . . . . .... .. .. .. .. . ......... . ........................................................... ... . . . . . . . .. . . . ... .. . .. . . .. .... . . . ... . ... . . ..... .. .. . . ............................................................... .. . . . .. . . .. . . ..... .... . . .. . . . . .. ....... .. . ... .. .. . ............................. . . .. . . .. . . . . . .... . . . ........ . ..... .. ................ .. .. . .... . ......... ..... . ..... . ... . .. .. . ........... . .. . . . .. . . . . .. . . . . . . .. .. . . ... . .. ......... .. .... .... .. .. . ... ... . ..... . . . . .. . . .. . . . . ........... .... . .. . . . . . . . . .. .. ... . . ... . . ......................... . . . . . . . . .... . . . . . .. . . . . . . . . . .. . . .. . . . . . .. .. . ................... . .......... . . ...
lowQualScore : 000 0 000 0 0 0 22 00 0 0 0 0 8888 44 88 88 88 6 888888888 0 88888888888888888888888888888888888888888888888888888888888 888 5 7 7 3 7 7 7 22 7 7 7 555 22 7 88 7 7 22 5555 7 7 5 888 7 000 7 7 88888 22 22 5 2 888888888888888888888888888888888888888888888888888888888888888 00 7 7 0 88 6 2 88 8 0 00000 0000 2 0 00 0 8 8 8 00 8888888 44 0 888 00 44 0 66666666666666666666666666666 0 0 00 0 0 88 0 4 2 0 0 2222 0 0 0 33333333 5 22222 22 7777777777777777 22 22 2 8888 7 333333333 88888 7 44444 7 999 7 11 99 7 55555555555 3 22 7 7 7 22 0 7 6 8 00 0 0 0 6 6 0 00 66 0 8 222 0 00 888888888 00 0000 0000 00 88 2 555 000 8 22222 0 0 0 8 88 0 0 88 0 5 0 2 00000000000 1111 0 88 2 0 0 0 0 0 0 0 77 00 777 7 0 000 0 5 0000000000000000000000000 0 0 5 0 0 5 2 0 2222 0 0 8 7 3 55 7 5 7 7 7 7 7 7 7 77 7 7 22 7 7 7 3 0 99 99 7 7777777777777777777 0 8888888888 3 5 000
consensus : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-ATTGTGT-TATATATC----ATGTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATTTAAA-AGATCGTCAAA-TGTTTT-AGAAAGGGT-CGCAATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATGAT--GACTCAA---------AAAACAAAACGAATGAAAAGNACAT-G-CA--AAA---GTACA--TAAACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTGA-CACACAG----TGTGAAGAG-ACT--ATATTTTTATTNTT--AA-CGAA--CATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC-AA-TGTTT---------AC-----TA-ATGAGT-AGAG-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA-CAGT-T-AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAATAAA----AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACATT-GGCA-TGACAAAATTAATTGT-GTAC-ATGATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA---CTTA-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTAT-ATTTTTCCTAT--A-CAAATTTT--TTCGCAATTCAAA-CCA-CCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAGTTATCCGTTTTAGTTCAAATGATTAGTCCACTAC-CCCTACNAGAAACTCGA-A-GTAAT-CTTCTAGCGCTTACTGG-CGTGGAATTGC---AGA----T-CATTGT-ACGATATGTAC-AACTTGGGTAATGCAGT-ACTGTCAACAATGTTCCGAAAAAGTTTATTTACATCACGTAG-AT-AA-T-ACGGGTTTCT-GGAAACATGTCAATGGCATAATGG-ATAATCTTTTCCC-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-TG-CCA-A-TGTCACC-GG-TGCA-TTCGGG--TT-CGCCTT-CAGC-ACTGTCANTACTAC--TGT--T-TTCATGGTTAACTCT-GGGCATAGTTTCTTGGCTTTNCAACCTTTACAA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Reference ( family-2623 ) : GAATTAAA---TCG-GCAAA---CAANTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTGTGAT-ATTGTGT-TATATNTC----ATGTGG-GCTTGGATATTTT-TC-TAAA-TTGT-TTA-T--------TCCG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACGACAGAC-AGATTTTTGGA-CAGAC--TATTTAAAGAGATCGTCAAA-TGTTTT-AGAAAGGGTGCGCAATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATGAT--GACTCAA---------AAAACAAAACNAATNAAAAGTACAT-G-CA-TAAA---GT-CA--TAAACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCNCAACGTNCCGG-TTGATCACACAG----TGTGAAGAG-ACT--ATATNTTTATTNTT--AA-CAAA--CATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGCCAA-TGTTT---------AC-----TA-ATGNGT-AGAG--A-ACATG-CTNC-TTGGGNGTGAACAG-TNAAATTTAAAA-C-ATA-CA-CAGT-T-AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAATGAA----AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCGACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACATC-GGCA-TGACAAAATTAATTGT-GTA--ATGATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TTTTTT--ACTTTAGATGTAAATAATGA---TTTA-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGGT--TTAT-ATTTTTCCTAT--A-CNAATTTT--TTCGCAATTCAAA-CCA-TCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATNGCACCAGTTTGNAGATCGAAGTTATCCGTTTTGGTTCAAATGATTAGTCCACTACACCCTACAAGAAACTCGA-A-GTAAT-CTTCTAGCGCTTACTGG-CGCGGA--TG----AGA----T-CATTGT-ACGATATGTAC-AACTTGGGTAATGCAGT-ACTG-CAACAATGTTCCGAAAAAGTTTATTTACATCACGTAG-AT-AA-T-ACGGGTTTCT-GGAAACATGTCAATGGCATAATGG-ATAATCTTTTCCC-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-TG-CCA-A-TGTCACC-NG-TGCA-TTCGGG--TT-CGCCTT-CAGC-ACTGTCANTACTAC--TGT--T-TTCATGGTTAACTCT-GGGCA-AGTTTCTTGGCTTTTTAACCTTTACAAATTACCCTTAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
gi|1 : GAATTAAACCATCGCGCAAAGCCCAATTACAAACTCCTCATAATCCACCAAAGGGGACTTAT-AATTGATGCATATCTGAAAGT-----TTTAAAAGTGTTTTCATTGAA----TTTTTTG-----ATTGTG----------------GTGC-GCTTGGATATCTT-T-------------------------TCCG------------------------G---TGCT--TCAGTTGCA-GCCATT-GGC-CC-AT-G--GATCTC-TT-GATTCTCACCCT--CA-GACG-CAGAC-AAATGTTTGGAGCAGACCTTCTTTCAATAGATCGTCATA-TGTTTTTATAAAGTGTGCGCAATATGCCGAAATAAAAAACTA-TTAAA-AATGAGAG--AATATTCTCAAAAA--GTTTTTATTAAAATATATAAT--GACTTAAGAGTGACATAAAACAAAACAAATCAAAAGTACAT-AACAGTAAAAAAGTACGATTAAACAAAAAGCTG-CTCATT-CCTTCG-AAATTCACGGCTGATCACAGCG-ACCAG-TGAATCATACAG----TGTAAAGAGCACT--ATATTTTTATTTTT--AATCAAGACCATTTCCAACAACAACATCCCTCGTT--AAAG--TTCA-TTGC--A-TATTTTTAGACTTCAC-----TA--TGAGT-AGAAGAA-ACATGACTTC-CTGGGAGT-AACAG-TGAAATTTAAAATC-CTA-CA-CAGTCT-AATGATGTTACTT-CCTCCTGTGCGCT--TAAG--CAT---------------TACCT--TGCTTACATAATGACC---AAAGA-A---C-----ACAAAAAATATCCT-TCACG--TTATTA-ACAAAATA---GAAAA-AACTA--ATTAGGA-----A-----GCATTGTTATTGAAAATATTT--GTCAGTTATGAGAAC-AAGAA-ACAATCCGGAAAAATGTCAGCATGT-CATTG--ACAATTACAAGTAATA-ATTCTTTTCTTCAACTTTAAAAGGGACTCGTTTT-AAAAAGGCACAT--GACACTGACAAAATTAATTGTCGTAC-ATGATGCATCACCTAC---------TTGGCGACAACAGAGAATAGAGCAAGACAAGAAACTGGATATATACTC----TTTT--TCTCTT--ACTTTAGATGTAAATAATGGACCTTCA-A-TCAAAA-AATTTACAATA-CCCATCA-TATCTTGAAGAAAGGGGA-TGAGAAA-GCTTGTATATATT-ATTCG-CCAACCTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAAGGT--TT----TTTTTCTTAT--A-CCAATTTT--TTCGCAATTCAAA-CCA-CCT-CTTGTCAATCTCTGA-CAGAAATAACCA-GACATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACCAGAAACTCGA-A-GTAAA-CTTCTAGCGCTTACTGGTTTTGGAATTGC---AGGCAATT-CATTGT-ACGATATGTAC-AACTTGGGTAATGCAGT-ACTGTCAACAATGTTCCGAAAAAGTTTATATACATCACGTAG-AT-AATT-ACGGGTTTCT-GGGAACATGTCAATGGCATAATGG-ATAATCTTTTCCC-ATATTTCAACAG-TTAACAAAGTTG-TCTCATG-ATCAA-TAC-TG-CCA-A-TGCCACC-TA-TGCA-TTCGGG--TT-CGCCTT-CAGC-ACTGTCATGACTAC--TGT--T-TTCATAGTTAACTAT-GGGCATAGTTTCTTGGCTTTACAACCTTTACAAATTACCCTCTGCATTTAAGTTAGATATAGAAAATACATCACACATTT
gi|10 : CGAATGAAAAAAACATTG-CA--ATA---GTGCA--TAAACAAAAA-CTG-CTCATT-TCCTCG-TAATT-ACGGCTGATC--AACGTACCGG-TTGA-CA-ACAT----TGTGAAGAG-ACT--AAATTTTT--TTTT--AA--GTA--CATTT-GAA-AACAACATC--TTGGT--AAAG-GTTTA-TTGC------------------A-------A-ATGAGT-AGAG--A-ATATG-CTGC-TTGGGA-TGAACAG-TGAA--TTAAAA-C-ATA-CA--AGT---AATGATGTTAGTCACCTCATGTGC--T--TAAG--TAT----------------ACCT--TG--TACATAAGAAG----AAAGA-A---------ACAAAAAAT--CAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AC-TA--
gi|11 : -TCA-A--TTATTA-ACAAAATA--TGAAAA-A--TG--ATTAGGA-----ATTGTAGCAT-ATTGATGAAAATATTT--CTACGTTATGAGAAC-A-GAA-ACAA--CGGGAAA-TATCTACATGTTCATTG--A-GGTT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACATT-GGCA-TGACAAAA-TAATTGT-GTA--ATGATGCATCACCTACATGTAC---TTAGCGACAA--GGAAACACAGGAACACAAGAAAGT-GATATATACTC----TTAT--Tgaaaaaatgtgatg
gi|12 : a-T-ACGGGTTTCT-GGAAACATGTCAATGGCATGATGG-ATAATCTTTTCCC-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-TG-CCA-A-TGTCACC-GG-TGCA-TTCGGG--TT-CGCCTT-CAGC-ACTGTCAGTACTGG--AGT--T-TT
gi|13 : ACATGTCAGTGGCATAATGG--TAATCAGTTCCCAATATTTC-ACAGTGTAAACAAGTTGCCCTCATG-GTCAA-TACTTG-CCACATTCTCACCATG-TGCA-TTCGGG--TTCCGCCTT-CAGC-ACT-----TG--AC--TGT--TGTTCA--GTTAACTCT--GGCACAGTTTCacgaagaagcttacttttacaatcgacggctgacttttacaatat
gi|14 : aaatAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AT--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TATTTGTTTTGAAAA--TATTTTATGAT--TT-TGT-TATATATA----ATGTGG-GCTTGGATATTTT-TC-
gi|15 : tttatcaA-CAAG-T-AATGATGTTAGTTTCCTCCTGTGCG-T--TAAG--CA----------------TACCT--TG--TACATAATGAA----AAAGA-A---------ACAAAAAATAT--T-TCA-G--TTATTA-ACAAAATA---GAAAA-AA-TA--ATTAGGA-----A-----GCATTG-TGATGAActa
gi|16 : CTC-TAGC-ACTGTCATTACTAC--TGT--T-TTCATGGTTA-------------------TGGCTTTACAACCTTTACAA-------------------------ATAGAAAATACATCACACGTTT
gi|17 : cacataccacgtaattctctTCTTGGCTTTTTAACCTTTACAA-TTACCTTTAGCATTTAAGTTAAATATAGAA
gi|18 : GAATTAAA---TCG-GCAAA---CAATTACAAACTC-TCATAATC-AC--A
gi|19 : ctctttAAAATTAT---CAA-A-CCCATCA-TATCTTGAAGAAAGGGGGATGAGAAA-
gi|2 : --------TCTG------------------------C---TGCA--TCAGTTG-AAGCCATTTGGC-CC-ATTG--GATCTCATT-GATTTT-AACCCAACA-GACG-CAGAC-AGATTGCTGGA-CAGAC--TATTTAAGAAATTCGTGAAAATGGTTT-AGAA-GGGT-TGCAATATGT-GAAATAAAA---TA-TTAAA-AAGAGT-T--GATGTTT--AAAAAAAGTTCTTATTAAT-TATATGAT------CAA---------ATGA-AAAACAAA---AAA----AT-G-CA--AAA---GTACA--TAAATAAAT-GCTG-TTCATTCTCCTCG-TAATT-ACGGCTGCTATCAATGTTCTAGATTG--CACACAAAAGATGTGAA-AG-CCT--ATATGT--ATTATT--AA-CAA---CATTTTCAA-AACAACATC----GGTTAAAAG-ATTCACTTGCCAAATGTTT---------ATAATTTCA-ATGCGT-AGAG--A-ACAGG-C-GC-TTCGG-GTGAACAGGTTAAATC-AAAA-C-ATA-GA--A---T-GATGATGTTAGTTACCTCATGTG-G-TCCTAAGTACATGTA------------TACCT--AG--TACATAATAAA----AAAGA-AACCC-----CCAAAAAAAATCAT-TCA-------TTA-ACAAAATA--TGAAAATAA-TAGTATT-GTT-----A-----GCATT-TTGATGAAAATATTCTTCTACGTTTTGAGAATTA-GAA-ACAA--CGGGAAATAATCAACATGTTCATTGCAA-AAGT-CAAG-AATA-ATTATTTTCTTCCA-GTTTAAAGAGACTCGTTTTTAAAAAGG-ACATCTGGCA-TGACAAAAT-AATTGT-GTACAAAGATGCATCACCTACAT---TAC-TTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC----TTTT--TTTTTTTTACTTTAGATGTAA-TAATGA---TTTA-AATCAAAATG--T--CAA-AACTTAT-A-TATCTTGAAGAAAAAGAAATGAGAA--GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTGTAAGAAATACTAGT-TG-TTT-GGAAG--T--TTATTATTTTTCCTATTTA-CAAATTTT--T-CGCAATTCAAAACCAATCT-GTTGTTCATCTCTGA-CAGAAATAACCACGGCATGGCATCAGTTTGTAGATCAAAGTTATCCGTTT-GGTTCAAATGATTAGTCCACTAC--CCTACAAGAAACTCGACA-GTAAT-CTTCTAGCGCTTACT-----TGG---TG----AGA----T--ATTGT-ACGATATGTACCAACTTGGGTAATGCAGTTATTG-CAACAATGTTC-AAAAAAGTTTATTTACATT-CATAGTAT-A--T-ACGGGTTTCTTGAAAATAT-TCAATGGC-TAATGATACAATCTTTTCCTTATATTC--ACAG-GTAACAA-GTTG-CT--ATGAGTCAA-TAC-TGGCCA-A-TGTCACC-GG-TGCA-TTCGGGGTTT-CGCTTTTCAGCCACT-TCAGTACTAC--TGTGTT-TTCATGGTTAACTTTTGGGC-----------GCTTTTTAACCTTTACAATTTACCCTTAGCATTTAAGCTAAATATAGAAAATACATCACACGTTT
gi|3 : tcaTATTT--CTGCGTTATGAGAAT-A-GAA-ACAA--CGAGGAA-TATCGACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTA-AAAATGGCACATT-GGCA-TGAC-AAATTAATTGT-GTA--ATGATGCATCACCTACAT---TTACTTAGCGACAA--GGAAACACAGGAACACAAGAAGT--GATATATACTC----TCTTTATTTTTT--ACTTTATATATAAATAATGA---CTTA-A-TCAAACTGATT--CAA-A-CTTATCAGTATCTTGAAAAAAAGAGAACGAGAAAGGCTTGT-TAGATTAAT--GCCCAAACTTCATGGTTTAAGAAATACTAGTCTGTTTTTGGAAGGTT--TAAT-ATTTTCCCTAT--ACCAAATTTTTGTTCGTAATTCAAA-ACA-CCT-GTTGTCAATCTCTGA-CAGAAAGAACCA-GGC
gi|3 : CCAACAAAAAACTCGA-A-GTAAT-CTTCTAGCACTTACTGGGCGTGGA-----------------CATTGT-ACGATATGTAC-AACATGGGTAATGCAGT-ACTGTCAACAATGTTCCGAAAACGTTTATTTACATCAAGTAG-AT-AA-TTACGGCTTTCT-GGAAACATGTCAATGGCATAATGG-ATAATCTTTTCCC-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-TG-CCA-A-TGTAACC-GG-TGCA-TTCGGG--TT-CGCCTT-CAGC-ACTGTCAGTACTACTGTGT--T-TTCATGGTTAACTCT-GGGCATAGTTTCTTGGCTTTTTAACCTGTAC-AATTACCCTCAGCATTTTAGTTAAACATAGAAAATAAATCACACGTTTcaacaaaaaactcgaagtaatcttctagcacttactgggcgtggacattgtacgatatgtacaacatgggtaatgcagtactgtcaacaatgttccgaaaacgtttatttacatcaagtagataattacggctttctggaaacatgtcaatggcataatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtaaccggtgcattcgggttcgccttcagcactgtcagtactactgtgttttcatggttaactctgggcatagtttcttggctttttaacctgtacaattaccctcagcattttagttaaacatagaaaataaatcacacgttt
gi|4 : tatttctgcgttatgagaatagaaacaacgaggaatatcgacatgttcattgagattcaagaatatattattttcttcaatttaaaagggactcgtttaaaaatggcacattggcatgacaaattaattgtgtaatgatgcatcacctacatttacttagcgacaaggaaacacaggaacacaagaagtgatatatactctctttattttttactttatatataaataatgacttaatcaaactgattcaaacttatcagtatcttgaaaaaaagagaacgagaaaggcttgttagattaatgcccaaacttcatggtttaagaaatactagtctgtttttggaaggtttaatattttccctataccaaatttttgttcgtaattcaaaacacctgttgtcaatctctgacagaaagaaccaggAT-G-CA--AAA---GTACA--TAAACAAAATGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATC--AACGTACCAG-TTGA-CA-ACAG----TGTGAAGAG-ACT--ATGTTTTTATT--T--AA--GAA--CATTT-GAG-AACAACATC--TTGGT--AAAG-GTTTA-TCGC----------------------------ATGAGT-AGAG--A-ATATG-CTGC-TTGGG-GTGAACAG-TGAA--TTAAAA-C-ATA-CA--AGT---AATGATGTTAGTTACCTCATGTGC--T--TAAG--TAT----------------ACCT--TG--TACATAATAAG----AAAGA-A---------ACAAAAAATA--AT-TCA-------TTA-ACAAAATA--TGAAAA-A--TA--ATTAGGA-----------TCATTGT-GATGAAAATATTC--GTACGTTATGAGAAT-A-GAA-ACAA--CGG-AAAATATCAACATGTTCATCG--A-GATT-CAAG-AATATATTCTTTTCTTCAG-TTTAAAAGGGACTCGTTT--AAAAAGGCACATT-GGCT-TGACAAA--TAATTGT-GTA--ATGGTGTATCGCCTAC---------TAAGCAACAA--GGAAACACAGGAACACAAGAAACT-AATATAAACTCTTTATTTT--TCTTTT--ACTTTAGATGTAAATAATGA---CTTGCA-TCAAAATGA-T--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGCTTATTAT--TTTTTCCTAT--
gi|5 : aaaaA-T--------TCTG----------------------------TGCTC-TGATTTG-A--CCATT-GTCTCC-AT-GCAAACTTC-T---ATT---AACCT--CAAGACGACAGACCAGATTTT--GA--AGAC--TATTC---TAGATCGTCAA--TGTTT--AGAAAGG-----CAATATGT-GAAATAAATG-ACACTTAAATAATGAT-GTAAACAT-----AACAT-GTTT--ATTAACATATTAGATTCAACT--A---------AAAACGAAA--AATGCAAAGTACAT----A-TAA-----------TAA--------CTGGTTCATT-TTATCGCTAAT--ACG-CTGATCTCAA-ATTTTAG-TTGA---CAAAG----TGTGAAAAGGAGTGAATATGCTTATTACTTCAG-CACA--CTATTCAAA-AACAA-ATC--CTGGT--AAACTATTCACTTGCTAA-TGTTT---------AC-----TCTCTGCGTCAGAACAACACATG-CTTCATTGGG-GTAAACAG-TTAAATACAAAA-CAATAGCATCAGT-TAAATG-TGTTAGTTA-CTCATGTGCGTT--TAAT--GATACCAGACCACTAATATACCTAGTC--TACATAATTAACAATAAAGACA---CCATCTACGAGCAA-ATCGTAACA-AACATATTACCCAAAATGATTGAAAA-AA-AA--ATTGGAATCTGTA-----GC-TT-TTGATGAAAAGATTC--CTACGTTATGAGAAT-A-GAGCACAA--CGGGCAAATcaac
gi|6 : attgtgacccactgcctttgttttctttccaAAATTT--TTCGCCAATCAAA-CCA-TCTTGTTGTCAATCTCTGAGCAGAAATAGCCA-GGCATTGCACCAGTTTGGAGATCGAAGT-ATCCGTTTTAGTTCAA-TGATTAGTCCACTACACCCTACCAGAAACTCGA-AAGTAATACTTCTAGCGCCTACTGG-CGCGGAATTGCAGCAAA----TACATTGTTACGATATTTAC-AACTTGG-TAATGCAGT-ACTA-CAACAATGTTCCGAAAAAGTTTATTTACATCACGTAG-ATAAA-T-ACGGGTTTCT-GG-GACATGTCAATGGCATAATGG-ATAATCTTTTCCC-ATATTTCAACA--GTAACAAAGTTG-CCTCATT-GTCAATTAC-TG-CCA-A-TGTCACC-GGTTGCATTTCGGA--TT-CGCC-T-CAGC-ACTGTCATTACTAC--TGT--T-TTCATGGTTA----T-GCG--------------TTTACAACCTTTACAA-------------------------ATAGAAAATACAT-ACACGTTT
gi|7 : C--AAAGGGA--TAT-GAT-GATG-ATACCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACATGTTTTTTTTAATGATTTTGT-TATATTACATGTATGTGG-GCTTGGATATTTT-TCTTAAATTTGT-TTAGTA-------TTTG------------------------GATCTGCTGCTCAGTTG-A-GCCATTTGGC-CC-AT-G--GA---C-TT-GATTT--AACCT--CA-GATGACAGAC-GGATTTTTGGT-CAGAC--TATTT-AAGAGATCGTCAAA-TGTTTT-AGAATGGGT--GCAGTATAC-ACAATAAAAG--TG-TTAGA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATAT---AT--GACTCA---------------------AATAAAAAGAAC-C-G-CA--AAA---TTATA--TAAACAAAAAGCTG-CTCATT-TCCT
gi|8 : AATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATCGAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-ATTGTGTATA-ATGTC------GTGGCGCTTGGATATTTC-CC-TAAC-TTGTATTA-TA-------TCTGTTTAGTTTGTATTCATGTAGATCTG---TGCC--T-AGTTG-A-GTTATTTGGG-CCGAT-G--GATCTC-TTTGATTT--AACCT--CA-GAC--------AGATTTTTGGA-CAGAC--TATTTAAA-AGATTGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G--A-TATTC--AAAAAT-GTTTTTATTAAAATATAT
gi|9 : ctttaAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-AT--TGT-TATATA------ATGTGG-GCTTGGATATTTTCCC-TAAACTTGT-TTA-TTGTTTAGATCTG------------------------C---TGC---TCAGTTG-A-GTTATTTGGC-CG-AT-G--GATCTC-TT-GATTT--AACCT----------CAGAC-AGATTTTTGGA-CAGAC--TATTTAAA-AGATTGTCAAA-TGTTTT-AGAAAGGGT--GCAATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 111 111 11 1111 11 444444444 99999999999999999999999999999999999999999999999999999999999 222 111 111 22 333 22222 11 888888888888888888888 222 11111 11 11 111 2 1111 1 11 11 333333 11 111 11 11 2 0000000000000000000000000000 1111 2 1111 333333 22222 6666666666666666 1111 11 444444444 22222 111 222222222222 11 1 11 1 2 555555555 11 2222 1111 11 11 11 11111 11111 1 1 11 1 11 22222222 11111 11 1 1 1 1 1 2 2 22 111 1 11111 5555555555555555555 1 1 1 22222 11 111 1 11 3333333333333333333 1111111111
lowQualScore : 444 8 444 0 8 8 99 11 8 8 8 8 1111 0 88 00 88 5 000000000 8 11111111111111111111111111111111111111111111111111111111111 111 2 6 6 7 6 6 6 99 1 6 6 777 99 6 666 6 6 99 6 6 6 6 6 3 88 6 111 6 6 88888 99 00 9999 2 0 666666666666666666666 77 000 6 6 66666 99 6 00 6 6 8 88 55 3 22 8 0 111 3 7777 3 6 11 0 66 44 11 111111 66 8 444 11 44 0 8888888888888888888888888888 0 8 9999 88 8 0 8 0 3 8 4444 8 8 8 555555 6 3 00000 99 8888888888888888 99 99 4444 11 6 333333333 7 44 5 00000 5 222 5 77 77 1 777777777777 66 99 6 6 6 99 1 0 11 8 8 8 0 0 8 0 8 88 8 0 777 8 0 8 333333333 11 0000 7777 11 33 3 33 55555 0 88888 8 8 8 0 88 0 0 33 0 2 33 77 11111111 88888 3 33 3 0 0 0 0 0 3 3 0 3 0 2 2 3 3 00 1 111 0 2 77777 9999999999999999999 0 0 2 8 0 00000 5 11 3 3 111 6 8 3 6 6 6 00 6 3 7 6 6 6 6 6 6 6 6 6 6 99 6 5 5 4 3 77 77 5 8888888888888888888 1 6 5555555555 3 1 222
lowQualScore : ... . ... . . . .. .. . . . . .... . .. .. .. . ......... . ........................................................... ... . . . . . . . .. . . . ... .. . ... . . .. . . . . . . .. . ... . . ..... .. .. .... . . ..................... .. ... . . ..... .. . .. . . . .. .. . .. . . ... . .... . . .. . .. .. .. ...... .. . ... .. .. . ............................ . . .... .. . . . . . . .... . . . ...... . . ..... .. ................ .. .. .... .. . ......... . .. . ..... . ... . .. .. . ............ .. .. . . . .. . . .. . . . . . . . . .. . . ... . . . ......... .. .... .... .. .. . .. ..... . ..... . . . . .. . . .. . . .. .. ........ ..... . .. . . . . . . . . . . . . . . . .. . ... . . ..... ................... . . . . . ..... . .. . . ... . . . . . . .. . . . . . . . . . . . . . .. . . . . . .. .. . ................... . . .......... . . ...
lowQualScore : 000 0 000 6 0 0 22 00 0 0 0 0 8888 8 88 88 88 6 888888888 0 55555555555555555555555555555555555555555555555555555555555 888 5 7 7 3 7 7 7 22 7 7 7 555 22 7 888 7 7 22 7 7 7 7 7 5 55 7 000 7 7 00000 22 22 8888 5 2 444444444444444444444 00 444 7 7 77777 22 7 00 7 7 0 88 66 2 22 0 8 888 2 0000 2 0 00 6 44 66 00 444444 44 0 888 00 44 0 4444444444444444444444444444 6 0 8888 88 0 8 0 4 2 0 2222 0 0 0 777777 7 5 22222 22 8888888888888888 22 22 2222 00 7 333333333 5 00 7 99999 7 999 7 11 99 7 888888888888 77 22 7 7 7 22 7 8 00 0 0 0 6 6 0 8 0 88 0 8 222 0 0 0 888888888 00 0000 0000 00 88 2 88 88888 8 22222 0 0 0 8 88 0 0 88 0 5 22 00 88888888 00000 2 88 2 0 0 0 0 0 2 0 2 2 2 0 5 2 7 00 0 000 0 5 55555 8888888888888888888 0 0 5 0 6 00000 0 00 2 2 000 0 0 8 7 7 7 55 7 2 3 7 7 7 7 7 7 7 7 7 7 22 7 7 7 3 0 99 99 7 2222222222222222222 0 7 7777777777 3 5 000
consensus : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-ATTGTGT-TATAT---AT--ATGTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGT--GCAATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA---------A-GACAAAACGAATGAAAAGAACAT-G-CA-----AAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTGA--CA-ACAG----TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA-CAG--T-AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAN-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAGT-ATCCGTTTTAGTTCGA-TGATTAGTCCACTAC-CCCTACNAGAAACTCGA-A-GTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTGT-ACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAGAT-A-ATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGT--T-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Reference ( family-2623 ) : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-ATTGTGT-TATAT---AT-CATGTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGT-CGCAATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATGATGACTCAA---------AAAACAAAACGAATGAAAAGNACAT-G-CA-----AAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTGA--CACACAG----TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA-CAGT-T-AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAA-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAGTTATCCGTTTTAGTTCAAATGATTAGTCCACTAC-CCCTACNAGAAACTCGA-A-GTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTGT-ACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAGAT-A-AT-ACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGT--T-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
gi|1 : GAATTAAACCATCGCGCAAAGCCCAATTACAAACTCCTCATAATCCACCAAAGGGGACTTAT-AATTGATGCATATCTGAAAGT-----TTTAAAAGTGTTTTCATTGAA----TTTTTTG-----ATTGTG----------------GTGC-GCTTGGATATCTT-T-------------------------TCCG------------------------G---TGCT--TCAGTTGCA-GCCATT-GGC-CC-AT-G--GATCTC-TT-GATTCTCACCCT--CA-GACG-CAGAC-AAATGTTTGGAGCAGACCTTCTT-TCAATAGAT-CGTCATA-TGTTTTTATAAAGTGTGCGCAATATGCCGAAATAAAAAACTA-TTAAA-AATGAGAG--AATATTCTCAAAAA--GTTTTTATTAAAATATATAATGACTTAAGAGTGACATAAAACAAAACAAATCAAAAGTACAT-AACAGTAAAAAAGTACGATTA-AACAAAAAGCTG-CTCATT-CCTTCG-AAATTCACGGCTGATCACAGCG-ACCAG-T-GAATCATACAG----TGTAAAGAGCACT--ATATTTTTATTTTT--AATCAAGACCATTTCCAACAACAACATCCCTCGTT--AAAG--TTCA-TTGC--ATATTTTTAGACTTCAC-----TA--TGAGT-AGAAG-AA-ACATGACTTC-CTGGGAGT-AACAG-TGAAATTTAAAATC-CTA-CA-CAGTCT-AATGATGTTACTT-CCTCCTGTGCGCT--TAAG--CAT---------------TACCT--TGCTTACATAAT----GACCAAAGA-A---C-----ACAAAAAATATCCT-TCACG--TTATTA-ACAAAATA---GAAAA-AACTA--ATTAGGA-----A-----GCATTGTTATTGAAAATATTT--GTCAGTTATGAGAAC-AAGAA-ACAATCCGGAAAAATGTCAGCATGT-CATTG--ACAATTACAAGTAATA-ATTCTTTTCTTCAACTTTAAAAGGGACTCGTTTT-AAAAAGGCACAT--GACACTGACAAAATTAATTGTCGTACAT-GATGCATCACCTAC---------TTGGCGACAACAGAGAATAGAGCAAGACAAGAAACTGGATATATACTC----TTTT--TCTCTT--ACTTTAGATGTAAATAATGGACCTTCA-A-TCAAAA-AATTTACAATA-CCCATCA-TATCTTGAAGAAAGGGGA-TGAGAAA-GCTTGTATATATT-ATTCG-CCAACCTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAAGGT--TT----TTTTTCTTA--TA-CCAATTTT--TTCGCAATTC-AAACC-ACCT-CTTGTCAATCTCTGA-CAGAAATAACCA-GACATTGCACCAGTTTGGAGATCGAAGT-ATCCGTTTTAGTTCGA-TGATTAGTCCACTAC-CCCTACCAGAAACTCGA-A-GTAAA-CTTCTAGCGCTTACTGG-TTTTGGAATTGCAG---GCAATT-CATTGT-ACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TATACATCACGTAGAT-A-ATTACGGGTTTC-TGGGAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-TTAACAAAGTTG-TCTCATG-ATCAA-TAC-T-GCCA-A-TGCCACCT-A-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCATGACTAC--TGT--T-TTCATAGTTAAC-TATGGGCATAGTTTCTTGGCTTTACAACCTTTACAAA-TTACCCTCTGCATTTAAGTTAGATATAGAAAATACATCACACATTT
gi|10 : CGAATGAAAAAAACATTG-CA-----ATAGTGCA--TA-AACAAAAA-CTG-CTCATT-TCCTCG-TAATT-ACGGCTGA--TCAACGTACCGG-TTGA--CA-ACAT----TGTGAAGAG-ACT--AAATTTT--TTTTT--AA----GTACATTT-GAA-AACAACATC--TTGGT--AAAG-GTTTA-TTGC--A----------------------A-ATGAGT-AGA-G--A-ATATG-CTGC-TTGGGA-TGAACAG-TGAA--TTAAAA-C-ATA-CA--AG--T-AATGATGTTAGTCACCTCATGTGC--T--TAAG--TA----------------TACCT--TG--TACATAAG----AAG-AAAGA-A---------ACAAAAA--ATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AC-TA--
gi|11 : -TCA-A--TTATTA-ACAAAATA--TGAAAA-A--TG--ATTAGGA-----ATTGTAGCAT-ATTGATGAAAATATTT--CTACGTTATGAGAAC-A-GAA-ACAA--CGGGAAA-TATCTACATGTTCATTG--A-GGTT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAA-TAATTGT-GTA-AT-GATGCATCACCTACATGTAC---TTAGCGACAA--GGAAACACAGGAACACAAGAAAGT-GATATATACTC----TTAT--Tgaaaaaatgtgatg
gi|12 : aT-ACGGGTTTC-TGGAAACATGTCAATGGCATGATGG-ATAATCTTTTCC-C-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTGG--AGT--T-TT
gi|12 : CAG-CACTGTCAGTACTGGAGTTTTACGAAGAAGCTTACTTTTACAacgaagaagcttacttttacaatcgacggctgacttttacaatat
gi|13 : tacgggtttctggaaacatgtcaatggcatgatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtcaccggtgcattcgggttcgccttACATGTCAGTGGCATAATGG--TAATCAGTTCC-CAATATTTC-ACAGTGTAAACAAGTTGCCCTCATG-GTCAA-TACTT-GCCACATTCTCACCATG-TGCA-TTCGGG--TTCCGC-CTTCAG-CACT-----TG--AC--TGT--TGTTCA--GTTAAC-TCT-GGCACAGTTTCatcgacggctgacttttacaatat
gi|14 : aaatAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AT--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TATTTGTTTTGAAAA--TATTTTATGAT--TT-TGT-TATAT---AT-AATGTGG-GCTTGGATATTTT-TC-
gi|15 : tttatcaA-CAAG-T-AATGATGTTAGTTTCCTCCTGTGCG-T--TAAG--CA----------------TACCT--TG--TACATAAT----GAA-AAAGA-A---------ACAAAAAATAT--T-TCA-G--TTATTA-ACAAAATA---GAAAA-AA-TA--ATTAGGA-----A-----GCATTG-TGATGAActa
gi|16 : -CTCTAG-CACTGTCATTACTAC--TGT--T-TTCATGGTTA-------------------TGGCTTTACAACCTTTAC-AA-------------------------ATAGAAAATACATCACACGTTT
gi|17 : cacataccacgtaattctctTCTTGGCTTTTTAACCTTTAC-AA-TTACCTTTAGCATTTAAGTTAAATATAGAA
gi|18 : GAATTAAA---TCG-GCAAA---CAATTACAAACTC-TCATAATC-AC--A
gi|19 : ctctttAAAATTAT---CAA-A-CCCATCA-TATCTTGAAGAAAGGGGGATGAGAAA-
gi|2 : --------TCTG------------------------C---TGCA--TCAGTTG-AAGCCATTTGGC-CC-ATTG--GATCTCATT-GATTTT-AACCCAACA-GACG-CAGAC-AGATTGCTGGA-CAGAC--TATT-TAAG-AAATTCGTGAAAATGGTTT-AGAA-GGGT-TGCAATATGT-GAAATAAAA---TA-TTAAA-AAGAGT-T--GATGTTT--AAAAAAAGTTCTTATTAAT-TATATGAT----CAA---------ATGA-AAAACAAA---AAA----AT-G-CA-----AAAGTACA--TA-AATAAAT-GCTG-TTCATTCTCCTCG-TAATT-ACGGCTGCTATCAATGTTCTAGATTG---CACACAAAAGATGTGAA-AG-CCT--ATATGT--ATTATT--AAC----AACATTTTCAA-AACAACATC----GGTTAAAAG-ATTCACTTGCCAA-ATGTTTA-------TAATTTCA-ATGCGT-AGA-G-AA--CAGG-C-GC-TTCGG-GTGAACAGGTTAAATC-AAAA-C-ATA-GA--A---T-GATGATGTTAGTTACCTCATGTG-G-TCCTAAGTACATGTA------------TACCT--AG--TACATAAT----AAA-AAAGA-AACCC-----CCAAAAAAAATCAT-TCA-------TTA-ACAAAATA--TGAAAATAA-TAGTATT-GTT-----A-----GCATT-TTGATGAAAATATTCTTCTACGTTTTGAGAATTA-GAA-ACAA--CGGGAAATAATCAACATGTTCATTGCAA-AAGT-CAAG-AATA-ATTATTTTCTTCCA-GTTTAAAGAGACTCGTTTTTAAAAAGG-ACATCTGGCA-TGACAAAAT-AATTGT-GTACAAAGATGCATCACCTACAT---TAC-TTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC----TTTT--TTTTTTTTACTTTAGATGTAA-TAATGA--TTT-A-AATCAAAATG--T--CAA-AACTTAT-A-TATCTTGAAGAAAAAGAAATGAGAA--GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTGTAAGAAATACTAGT-TG--TTTGGAAG--T--TTATTATTTTTCCTATTTA-CAAA-TTT--TTCGCAATTCAAAACCAATCT-GTTGTTCATCTCTGA-CAGAAATAACCACGGCATGGCATCAGTTTGTAGATCAAAGTTATCCG-TTTGGTTCAAATGATTAGTCCACTA--CCCTACAAGAAACTCGACA-GTAAT-CTTCTAGCGCTTACT-----T-GG---TG-AG---A----T--ATTGT-ACGATATGTACCAACTTGGGTAATGCAGTTATTG-CAACAATG-----TT-CAAAAAAGTTTA--TTTACATT-CATAG-T-ATAT-ACGGGTTTCTTGAAAATAT-TCAATGGC-TAATGATACAATCTTTTCCTT-ATATTC--ACAG-GTAAC-AAGTTG-C--TATGAGTCAA-TAC-TGGCCA-A-TGTCACCG-G-TGCA-TTCGGGGTTT-CGCTTTTCAGCCACT-TCAGTACTACTGTGT--T-TTCATGGTTAACTTTTGGGC-----------GCTTTTTAACCTTTAC-AATTTACCCTTAGCATTTAAGCTAAATATAGAAAATACATCACACGTTT
gi|3 : tcaTATTT--CTGCGTTATGAGAAT-A-GAA-ACAA--CGAGGAA-TATCGACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTA-AAAATGGCACAT-TGGCA-TGAC-AAATTAATTGT-GTA-AT-GATGCATCACCTACAT---TTACTTAGCGACAA--GGAAACACAGGAACACAAGAAGT--GATATATACTC----TCTTTATTTTTT--ACTTTATATATAAATAATGA--CTT-A-A-TCAAACTGATT--CAA-A-CTTATCAGTATCTTGAAAAAAAGAGAACGAGAAAGGCTTGT-TAGATTAAT--GCCCAAACTTCATGGTTTAAGAAATACTAGTCTGTTTTTGGAAGGTT--TAA-TATTTTCCCTA--TACCAAATTTTTGTTCGTAATTC-AAAAC-ACCT-GTTGTCAATCTCTGA-CAGAAAGAACCA-GGC----CAACAA---AAAACTCGAAGTAATC--TTCTAG
gi|3 : CCAACAAAAAACTCGA-A-GTAAT-CTTCTAGCACTTACTGGGCGT-GGA-----------------CATTGT-ACGATATGTA-CAACATGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAACGTTTA--TTTACATCAAGTAGAT-A-ATTACGGCTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTAACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTAC--TGTGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTTTAACCTGTAC-AA-TTACCCTCAGCATTTTAGTTAAACATAGAAAATAAATCACACGTTTcacttactgggcgtggacattgtacgatatgtacaacatgggtaatgcagtactgtcaacaatgttccgaaaacgtttatttacatcaagtagataattacggctttctggaaacatgtcaatggcataatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtaaccggtgcattcgggttcgccttcagcactgtcagtactactgtgttttcatggttaactctgggcatagtttcttggctttttaacctgtacaattaccctcagcattttagttaaacatagaaaataaatcacacgttt
gi|4 : tatttctgcgttatgagaatagaaacaacgaggaatatcgacatgttcattgagattcaagaatatattattttcttcaatttaaaagggactcgtttaaaaatggcacattggcatgacaaattaattgtgtaatgatgcatcacctacatttacttagcgacaaggaaacacaggaacacaagaagtgatatatactctctttattttttactttatatataaataatgacttaatcaaactgattcaaacttatcagtatcttgaaaaaaagagaacgagaaaggcttgttagattaatgcccaaacttcatggtttaagaaatactagtctgtttttggaaggtttaatattttccctataccaaatttttgttcgtaattcaaaacacctgttgtcaatctctgacagaaagaaccaggAT-G-CA-----AAAGTACA--TA-AACAAAATGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGA--TCAACGTACCAG-TTGA--CA-ACAG----TGTGAAGAG-ACT--ATGTTTTTAT--TT--AA----GAACATTT-GAG-AACAACATC--TTGGT--AAAG-GTTTA-TCGC---------------------------ATGAGT-AGA-G--A-ATATG-CTGC-TTGGG-GTGAACAG-TGAA--TTAAAA-C-ATA-CA--AG--T-AATGATGTTAGTTACCTCATGTGC--T--TAAG--TA----------------TACCT--TG--TACATAAT----AAG-AAAGA-A---------ACAAAAAATA--AT-TC-------ATTA-ACAAAATA--TG-AAA-AA-TA--ATTAGG------A-----TCATTG-TGATGAAAATATTC--GTACGTTATGAGAAT-A-GAA-ACAA--C-GGAAAATATCAACATGTTCATCG--A-GATT-CAAG-AATATATTCTTTTCTTCAG-TTTAAAAGGGACTCG-TTT-AAAAAGGCACAT-TGGCT-TGACAAA--TAATTGT-GTA-AT-GGTGTATCGCCTAC---------TAAGCAACAA--GGAAACACAGGAACACAAGAAACT-AATATAAACTCTTTATTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-GCA-TCAAAATGA-T--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGCTTATTA-T-TTTTTCCTA--T--CAA
gi|5 : aaaaA-T--------TCTG----------------------------TGCTC-TGATTTG-A--CCATT-GTCTCC-AT-GCAAACTTC-T---ATT---AACCT--CAAGACGACAGACCAGATTTT--GA--AGAC--TATTCTA----GAT-CGTCAA--TGTTT--AGAAAGG-----CAATATGT-GAAATAAATG-ACACTTAAATAATGAT-GTAAACAT-----AACAT-GTTT--ATTAACATAT-TA--GATTCAA-------------CTAAA--AACGAAAA----AT-G-CA-----AA-GTACA--TATAATAA----CTGGTTCATT-TTATCGCTAAT--ACG-CTGATCTCAA-ATTTTAG-TTGA--CA-A-AG----TGTGAAAAGGAGTGAATATGCTTATTACTTCAGC---ACACTATTCAAA-AACAA-ATC--CTGGT--AAACTATTCACTTGCT-A-ATGTTTA-------C-----TCTCTGCGTCAGA-ACAACACATG-CTTCATTGGG-GTAAACAG-TTAAATACAAAA-CAATAGCATCAGT-TAAATG-TGTTAGTTA-CTCATGTGCGTT--TAAT--GATACCAGACCACTAATATACCTAGTC--TACATAATTAACAAT-AAAGACA---CCATCTACGAGCAA-ATCGTAACA-AACATATTACCCAAAATGATTGAAAA-AA-AA--ATTGGAATCTGTA-----GC-TT-TTGATGAAAAGATTC--CTACGTTATGAGAAT-A-GAGCACAA--CGGGCAAATc
gi|6 : attgtgacccactgcctttgttttctttccaAAATTTT--T-CGCCAATC-AAACC-ATCTTGTTGTCAATCTCTGAGCAGAAATAGCCA-GGCATTGCACCAGTTTGGAGATCGAAGT-ATCCGTTTTAGTTCAA-TGATTAGTCCACTACACCCTACCAGAAACTCGA-AAGTAATACTTCTAGCGCCTACTGG-CGC-GGAATTGCAGCAAA----TACATTGTTACGATATTTA-CAACTTGG-TAATGCAG-TACTA-CAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAGATAA-AT-ACGGGTTTC-TGG-GACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACA--GTAACAAAGTTG-CCTCATT-GTCAATTAC-T-GCCA-A-TGTCACCG-GTTGCATTTCGGA--TT-CGC-C-TCAG-CACTGTCATTACTAC--TGT--T-TTCATGGTTA-----TGCG--------------TTTACAACCTTTAC-AA-------------------------ATAGAAAATACAT-ACACGTTT
gi|7 : C--AAAGGGA--TAT-GAT-GATG-ATACCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACATGTTTTTTTTAATGATTTTGT-TATATTACATGTATGTGG-GCTTGGATATTTT-TCTTAAATTTGT-TTAGTA-------TTTG------------------------GATCTGCTGCTCAGTTG-A-GCCATTTGGC-CC-AT-G--GA---C-TT-GATTT--AACCT--CA-GATGACAGAC-GGATTTTTGGT-CAGAC--TATT-TAAG-AGAT-CGTCAAA-TGTTTT-AGAATGGGT--GCAGTATAC-ACAATAAAAG--TG-TTAGA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATAT---ATGACTCA---------------------AATAAAAAGAAC-C-G-CA-----AAATTATA--TA-AACAAAAAGCTG-CTCATT-TCCT
gi|8 : AATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATCGAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-ATTGTGTATA-AT---GT-C--GTGGCGCTTGGATATTTC-CC-TAA-CTTGTATTA-TA-------TCTGTTTAGTTTGTATTCATGTAGATCTG---TGCC--T-AGTTG-A-GTTATTTGGG-CCGAT-G--GATCTC-TTTGATTT--AACCT--CA-GA-------C-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGT--GCAATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
gi|9 : ctttaAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACA--TTTTTTATGAT-AT--TGT-TATAT---A---ATGTGG-GCTTGGATATTTTCCC-TAAACTTGT-TTA-TTGTTTAGATCTG------------------------C---TGC---TCAGTTG-A-GTTATTTGGC-CG-AT-G--GATCTC-TT-GATTT--AACCT----------CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGT--GCAATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 111 111 11 1111 2222222222222222222 99999999999999999999999999999999999999999999999999999999999 222 111 111 333 22222 11 1 9999999999999999999999 3333333333333 11 111111 1 11 11 333333 11 111 11 11 2 0000000000000000000000000000 1111 2 1111 33 11 22222 6666666666666666 1111 444444444 22222 111 222222222222 11 1 11 1 2 555555555 11 2222 1111 11 11 11 11111 11111 1 1 11 1 11 22222222 11111 11 1 1 1 1 1 1 11 22 111 1 11111 5555555555555555555 1 1 1 22222 11 1 1 1 11 3333333333333333333 1111111111
lowQualScore : 444 8 444 0 8 8 99 11 8 8 8 8 5 8 7777 0 6 1111111111111111111 8 11111111111111111111111111111111111111111111111111111111111 111 2 6 6 7 6 6 6 99 1 6 6 777 99 6 666 6 6 99 6 6 6 6 6 2 99 6 111 6 6 88888 99 00 3 7 5 6 0000000000000000000000 77 6666666666666 99 6 00 6 6 8 88 666 3 22 8 0 666666 8 5 8 3 6 11 0 66 44 11 111111 66 8 444 11 44 0 8888888888888888888888888888 0 8 9999 88 8 0 8 0 3 8 4444 8 8 6 00 88 3 00000 99 8888888888888888 99 99 4444 77 6 333333333 7 44 5 00000 5 222 5 77 77 1 777777777777 66 99 6 6 6 99 1 0 11 8 8 8 0 0 8 0 8 88 8 0 777 8 0 8 333333333 11 0000 7777 11 33 3 33 55555 0 88888 8 8 8 0 88 0 0 33 0 2 33 77 11111111 88888 3 33 3 0 0 0 0 0 3 7 44 00 1 111 0 2 77777 9999999999999999999 0 0 2 8 0 00000 5 11 3 0 66 8 3 6 6 6 1 6 1 6 6 6 6 6 6 6 6 6 6 99 6 5 5 4 3 55 5 8888888888888888888 1 6 5555555555 3 1 222
lowQualScore : ... . ... . . . .. .. . . . . . . .... . . ................... . ........................................................... ... . . . . . . . .. . . . ... .. . ... . . .. . . . . . . .. . ... . . ..... .. .. . . . . ...................... .. ............. .. . .. . . . .. ... . .. . . ...... . . . . . .. . .. .. .. ...... .. . ... .. .. . ............................ . . .... .. . . . . . . .... . . . .. .. . ..... .. ................ .. .. .... .. . ......... . .. . ..... . ... . .. .. . ............ .. .. . . . .. . . .. . . . . . . . . .. . . ... . . . ......... .. .... .... .. .. . .. ..... . ..... . . . . .. . . .. . . .. .. ........ ..... . .. . . . . . . . . .. .. . ... . . ..... ................... . . . . . ..... . .. . . .. . . . . . . . . . . . . . . . . . . .. . . . . . .. . ................... . . .......... . . ...
lowQualScore : 000 0 000 6 0 0 22 00 0 0 0 0 0 0 0000 8 0 4444444444444444444 0 55555555555555555555555555555555555555555555555555555555555 888 5 7 7 3 7 7 7 22 7 7 7 555 22 7 888 7 7 22 7 7 7 7 7 5 22 7 000 7 7 00000 22 22 2 3 5 5 4444444444444444444444 00 4444444444444 22 7 00 7 7 0 88 888 2 22 0 8 000000 0 0 0 2 0 00 6 44 66 00 444444 44 0 888 00 44 0 4444444444444444444444444444 6 0 8888 88 0 8 0 4 2 0 2222 0 0 7 00 33 5 22222 22 8888888888888888 22 22 2222 77 7 333333333 5 00 7 99999 7 999 7 11 99 7 888888888888 77 22 7 7 7 22 7 8 00 0 0 0 6 6 0 8 0 88 0 8 222 0 0 0 888888888 00 0000 0000 00 88 2 88 88888 8 22222 0 0 0 8 88 0 0 88 0 5 22 00 88888888 00000 2 88 2 0 0 0 0 0 3 3 00 00 0 000 0 5 55555 8888888888888888888 0 0 5 0 6 00000 0 00 2 0 88 0 8 7 7 7 3 7 3 7 7 7 7 7 7 7 7 7 7 22 7 7 7 3 0 77 7 2222222222222222222 0 7 7777777777 3 5 000
consensus : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGTTATATAT-AT-GTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAG-----AACA-T-GCAAAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAN-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Reference ( family-2623 ) : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGTTATATAT-AT-GTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAG-----AACA-T-GCAAAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA-CAGT--AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAN-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
gi|1 : GAATTAAACCATCGCGCAAAGCCCAATTACAAACTCCTCATAATCCACCAAAGGGGACTTAT-AATTGATGCATATCTGAAAGT-----TTTAAAAGTGTTTTCATTGAA--T-TTTTT----G----ATTG---TG------------GTGC-GCTTGGATATCTT-T-------------------------TCCG------------------------G---TGCT--TCAGTTGCA-GCCATT-GGC-CC-AT-G--GATCTC-TT-GATTCTCACCCT--CA-GACG-CAGAC-AAATGTTTGGAGCAGACCTTCTT-TCAATAGAT-CGTCATA-TGTTTTTATAAAGTGTGCGCAATATGCCGAAATAAAAAACTA-TTAAA-AATGAGAG--AATATTCTCAAAAA--GTTTTTATTAAAATATATAATGACTTAAGAGTGACATAA-AACAAAACAAATCAAAAGTACATAACAGT-AAAAAAGTACGATTA-AACAAAAAGCTG-CTCATT-CCTTCG-AAATTCACGGCTGATCACAGCG-ACCAG-T-G---AATCATACAG-TGTAAAGAGCACT--ATATTTTTATTTTT--AATCAAGACCATTTCCAACAACAACATCCCTCGTT--AAAG--TTCA-TTGC--ATATTTTTAGACTTCAC-----TA--TGAGT-AGAAG-AA-ACATGACTTC-CTGGGAGT-AACAG-TGAAATTTAAAATC-CTA-CA-CAGTCTAATGATGTTACTT-CCTCCTGTGCGCT--TAAG--CAT---------------TACCT--TGCTTACATAAT----GACCAAAGA-A---C-----ACAAAAAATATCCT-TCACG--TTATTA-ACAAAATA---GAAAA-AACTA--ATTAGGA-----A-----GCATTGTTATTGAAAATATTT--GTCAGTTATGAGAAC-AAGAA-ACAATCCGGAAAAATGTCAGCATGT-CATTG--ACAATTACAAGTAATA-ATTCTTTTCTTCAACTTTAAAAGGGACTCGTTTT-AAAAAGGCACAT--GACACTGACAAAATTAATTGTCGTACAT-GATGCATCACCTAC---------TTGGCGACAACAGAGAATAGAGCAAGACAAGAAACTGGATATATACTC----TTTT--TCTCTT--ACTTTAGATGTAAATAATGGACCTTCA-A-TCAAAA-AATTTACAATA-CCCATCA-TATCTTGAAGAAAGGGGA-TGAGAAA-GCTTGTATATATT-ATTCG-CCAACCTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAAGGT--TT----TTTTTCTTA--TA-CCAATTTT--TTCGCAATTC-AAACC-ACCT-CTTGTCAATCTCTGA-CAGAAATAACCA-GACATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACCAGAAACTCG-A-AGTAAA-CTTCTAGCGCTTACTGG-TTTTGGAATTGCAG---GCAATT-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TATACATCACGTAG-ATAATTACGGGTTTC-TGGGAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-TTAACAAAGTTG-TCTCATG-ATCAA-TAC-T-GCCA-A-TGCCACCT-A-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCATGACTAC--TGTT-TTCATAGTTAAC-TATGGGCATAGTTTCTTGGCTTTACAACCTTTACAAA-TTACCCTCTGCATTTAAGTTAGATATAGAAAATACATCACACATTT
gi|10 : CGAATGAAAAA-----AACA-TTGCAATAGTGCA--TA-AACAAAAA-CTG-CTCATT-TCCTCG-TAATT-ACGGCTGATC--AACGTACCGG-TTG---A--CA-ACAT-TGTGAAGAG-ACT--AAATTTT--TTTTT--AA----GTACATTT-GAA-AACAACATC--TTGGT--AAAG-GTTTA-TTGC--A----------------------A-ATGAGT-AGA-G--A-ATATG-CTGC-TTGGGA-TGAACAG-TGAA--TTAAAA-C-ATA-CA--AGT--AATGATGTTAGTCACCTCATGTGC--T--TAAG--TA----------------TACCT--TG--TACATAAG----AAG-AAAGA-A---------ACAAAAA--ATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AC-TA--
gi|11 : -TCA-A--TTATTA-ACAAAATA--TGAAAA-A--TG--ATTAGGA-----ATTGTAGCAT-ATTGATGAAAATATTT--CTACGTTATGAGAAC-A-GAA-ACAA--CGGGAAA-TATCTACATGTTCATTG--A-GGTT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAA-TAATTGT-GTA-AT-GATGCATCACCTACATGTAC---TTAGCGACAA--GGAAACACAGGAACACAAGAAAGT-GATATATACTC----TTAT--Tgaaaaaatgtgatg
gi|12 : aTACGGGTTTC-TGGAAACATGTCAATGGCATGATGG-ATAATCTTTTCC-C-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTGG--AGTT-TT
gi|12 : CAG-CACTGTCAGTACTGGAGTTTTACGAAGAAGCTTACTTTTACAacgaagaagcttacttttacaatcgacggctgacttttacaatat
gi|13 : tacgggtttctggaaacatgtcaatggcatgatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtcaccggtgcattcgggttcgccttACATGTCAGTGGCATAATGG--TAATCAGTTCC-CAATATTTC-ACAGTGTAAACAAGTTGCCCTCATG-GTCAA-TACTT-GCCACATTCTCACCATG-TGCA-TTCGGG--TTCCGC-CTTCAG-CACT-----TG--AC--TGTTGTTCA--GTTAAC-TCT-GGCACAGTTTCatcgacggctgacttttacaatat
gi|14 : aaatAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AT--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TATTTGTTTTGAAAAT-ATTTT----ATGAT-TT----TGTTATATATAAT-GTGG-GCTTGGATATTTT-TC-
gi|15 : tttatcaA-CA--AGT--AATGATGTTAGTTTCCTCCTGTGCG-T--TAAG--CA----------------TACCT--TG--TACATAAT----GAA-AAAGA-A---------ACAAAAAATAT--T-TCA-G--TTATTA-ACAAAATA---GAAAA-AA-TA--ATTAGGA-----A-----GCATTG-TGATGAActa
gi|16 : -CTCTAG-CACTGTCATTACTAC--TGTT-TTCATGGTTA-------------------TGGCTTTACAACCTTTAC-AA-------------------------ATAGAAAATACATCACACGTTT
gi|17 : cacataccacgtaattctctTCTTGGCTTTTTAACCTTTAC-AA-TTACCTTTAGCATTTAAGTTAAATATAGAA
gi|18 : GAATTAAA---TCG-GCAAA---CAATTACAAACTC-TCATAATC-AC--A
gi|19 : ctctttAAAATTAT---CAA-A-CCCATCA-TATCTTGAAGAAAGGGGGATGAGAAA-
gi|2 : --------TCTG------------------------C---TGCA--TCAGTTG-AAGCCATTTGGC-CC-ATTG--GATCTCATT-GATTTT-AACCCAACA-GACG-CAGAC-AGATTGCTGGA-CAGAC--TATT-TAAG-AAATTCGTGAAAATGGTTT-AGAAGGGTTGC--AATATGT-GAAATAAAA---TA-TTAAA-AAGAGT-T--GATGTTT--AAAAAAAGTTCTTATTAA--T-TATA-TGA-TCAA----------ATGA-AAAACAAA---AAA---------A-T-GCAAAAGTACA--TA-AATAAAT-GCTG-TTCATTCTCCTCG-TAATT-ACGGCTGCTATCAATGTTCTAGATTGCACA--CA-AAAGATGTGAA-AG-CCT--ATATGT--ATTATT--AAC----AACATTTTCAA-AACAACATC----GGTTAAAAG-ATTCACTTGCCAA-ATGTTTA-------TAATTTCA-ATGCGT-AGA-G-AA--CAGG-C-GC-TTCGG-GTGAACAGGTTAAATC-AAAA-C-ATA-GA---AT--GATGATGTTAGTTACCTCATGTG-G-TCCTAAGTACATGTA------------TACCT--AG--TACATAAT----AAA-AAAGA-AACCC-----CCAAAAAAAATCAT-TCA-------TTA-ACAAAATA--TGAAAATAA-TAGTATT-GTT-----A-----GCATT-TTGATGAAAATATTCTTCTACGTTTTGAGAATTA-GAA-ACAA--CGGGAAATAATCAACATGTTCATTGCAA-AAGT-CAAG-AATA-ATTATTTTCTTCCA-GTTTAAAGAGACTCGTTTTTAAAAAGG-ACATCTGGCA-TGACAAAAT-AATTGT-GTACAAAGATGCATCACCTACAT---TAC-TTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC----TTTT--TTTTTTTTACTTTAGATGTAA-TAATGA--TTT-A-AATCAAAATG--T--CAA-AACTTAT-A-TATCTTGAAGAAAAAGAAATGAGAA--GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTGTAAGAAATACTAGT-TG--TTTGGAAG--T--TTATTATTTTTCCTATTTA-CAAA-TTT--TTCGCAATTCAAAACCAATCT-GTTGTTCATCTCTGA-CAGAAATAACCACGGCATGGCATCAGTTTGTAGATCAAAGTTATCCG-TTTGGTTCAAATGATTAGTCCACTA--CCCTACAAGAAACTCG-ACAGTAAT-CTTCTAGCGCTTACT-----T-GG---TG-AG---A----T--ATTG-TACGATATGTACCAACTTGGGTAATGCAGTTATTG-CAACAATG-----TT-CAAAAAAGTTTA--TTTACATT-CATAGTATA--TACGGGTTTCTTGAAAATAT-TCAATGGC-TAATGATACAATCTTTTCCTT-ATATTC--ACAG-GTAAC-AAGTTG-C--TATGAGTCAA-TAC-TGGCCA-A-TGTCACCG-G-TGCA-TTCGGGGTTT-CGCTTTTCAGCCACT-TCAGTACTACTGTGTT-TTCATGGTTAACTTTTGGGC-----------GCTTTTTAACCTTTAC-AATTTACCCTTAGCATTTAAGCTAAATATAGAAAATACATCACACGTTT
gi|3 : tcaTATTT--CTGCGTTATGAGAAT-A-GAA-ACAA--CGAGGAA-TATCGACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTA-AAAATGGCACAT-TGGCA-TGAC-AAATTAATTGT-GTA-AT-GATGCATCACCTACAT---TTACTTAGCGACAA--GGAAACACAGGAACACAAGAAGT--GATATATACTC----TCTTTATTTTTT--ACTTTATATATAAATAATGA--CTT-A-A-TCAAACTGATT--CAA-A-CTTATCAGTATCTTGAAAAAAAGAGAACGAGAAAGGCTTGT-TAGATTAAT--GCCCAAACTTCATGGTTTAAGAAATACTAGTCTGTTTTTGGAAGGTT--TAA-TATTTTCCCTA--TACCAAATTTTTGTTCGTAATTC-AAAAC-ACCT-GTTGTCAATCTCTGA-CAGAAAGAACCA-GGC
gi|3 : CCAACAAAAAACTCG-A-AGTAAT-CTTCTAGCACTTACTGGGCGT-GGA-----------------CATTG-TACGATATGTA-CAACATGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAACGTTTA--TTTACATCAAGTAG-ATAATTACGGCTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTC-ACAG-GTAAC-AAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTAACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTACTGTGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTTTAACCTGTAC-AA-TTACCCTCAGCATTTTAGTTAAACATAGAAAATAAATCACACGTTTcaacaaaaaactcgaagtaatcttctagcacttactgggcgtggacattgtacgatatgtacaacatgggtaatgcagtactgtcaacaatgttccgaaaacgtttatttacatcaagtagataattacggctttctggaaacatgtcaatggcataatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtaaccggtgcattcgggttcgccttcagcactgtcagtactactgtgttttcatggttaactctgggcatagtttcttggctttttaacctgtacaattaccctcagcattttagttaaacatagaaaataaatcacacgttt
gi|4 : tatttctgcgttatgagaatagaaacaacgaggaatatcgacatgttcattgagattcaagaatatattattttcttcaatttaaaagggactcgtttaaaaatggcacattggcatgacaaattaattgtgtaatgatgcatcacctacatttacttagcgacaaggaaacacaggaacacaagaagtgatatatactctctttattttttactttatatataaataatgacttaatcaaactgattcaaacttatcagtatcttgaaaaaaagagaacgagaaaggcttgttagattaatgcccaaacttcatggtttaagaaatactagtctgtttttggaaggtttaatattttccctataccaaatttttgttcgtaattcaaaacacctgttgtcaatctctgacagaaagaaccagg-----AAAA-T-GCAAAAGTACA--TA-AACAAAATGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGA--TCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATGTTTTTAT--TT--AA----GAACATTT-GAG-AACAACATC--TTGGT--AAAG-GTTTA-TCGC---------------------------ATGAGT-AGA-G--A-ATATG-CTGC-TTGGG-GTGAACAG-TGAA--TTAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGC--T--TAAG--TA----------------TACCT--TG--TACATAAT----AAG-AAAGA-A---------ACAAAAAATA--AT-TC-------ATTA-ACAAAATA--TG-AAA-AA-TA--ATTAGG------A-----TCATTG-TGATGAAAATATTC--GTACGTTATGAGAAT-A-GAA-ACAA--C-GGAAAATATCAACATGTTCATCG--A-GATT-CAAG-AATATATTCTTTTCTTCAG-TTTAAAAGGGACTCG-TTT-AAAAAGGCACAT-TGGCT-TGACAAA--TAATTGT-GTA-AT-GGTGTATCGCCTAC---------TAAGCAACAA--GGAAACACAGGAACACAAGAAACT-AATATAAACTCTTTATTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-GCA-TCAAAATGA-T--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGCTTATTA-T-TTTTTCCTA--T--CAA
gi|5 : aA-T--------TCTG----------------------------TGCTC-TGATTTG-A--CCATT-GTCTCC-AT-GCAAACTTC-T---ATT---AACCT--CAAGACGACAGACCAGATTTT--GA--AGAC--TATTCTA----GAT-CGTCAA--TGTTT--AGAAAGG---C--AATATGT-GAAATAAATG-ACACTTAAATAATGAT-GTAAACAT-----AACAT-GTTT--ATTAACATAT-TA--GATTCAA--------------CTAAA--AACGAAAA---------A-T-GCAAA-GTACA--TATAATAA----CTGGTTCATT-TTATCGCTAAT--ACG-CTGATCTCAA-ATTTTAG-TTG---A--CA-A-AG-TGTGAAAAGGAGTGAATATGCTTATTACTTCAGC---ACACTATTCAAA-AACAA-ATC--CTGGT--AAACTATTCACTTGCT-A-ATGTTTA-------C-----TCTCTGCGTCAGA-ACAACACATG-CTTCATTGGG-GTAAACAG-TTAAATACAAAA-CAATAGCATCAGTTAAATG-TGTTAGTTA-CTCATGTGCGTT--TAAT--GATACCAGACCACTAATATACCTAGTC--TACATAATTAACAAT-AAAGACA---CCATCTACGAGCAA-ATCGTAACA-AACATATTACCCAAAATGATTGAAAA-AA-AA--ATTGGAATCTGTA-----GC-TT-TTGATGAAAAGATTC--CTACGTTATGAGAAT-A-GAGCACAA--CGGGCAAATc
gi|6 : attgtgacccactgcctttgttttctttccaAAATTTT--T-CGCCAATC-AAACC-ATCTTGTTGTCAATCTCTGAGCAGAAATAGCCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-AATGATTAGTCCACTACACCCTACCAGAAACTCGAA-AGTAATACTTCTAGCGCCTACTGG-CGC-GGAATTGCAGCAAA----TACATTGTTACGATATTTA-CAACTT-GGTAATGCAG-TACTA-CAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAAATACGGGTTTC-TGG-GACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACA--GTAACAAAGTTG-CCTCATT-GTCAATTAC-T-GCCA-A-TGTCACCG-GTTGCATTTCGGA--TT-CGC-C-TCAG-CACTGTCATTACTAC--TGTT-TTCATGGTTA-----TGCG--------------TTTACAACCTTTAC-AA-------------------------ATAGAAAATACAT-ACACGTTT
gi|7 : C--AAAGGGA--TAT-GAT-GATG-ATACCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACATGTTTTTTTTAATGATTTTGTTATATTACATGT-AT-GTGG-GCTTGGATATTTT-TCTTAAATTTGT-TTAGTA-------TTTG------------------------GATCTGCTGCTCAGTTG-A-GCCATTTGGC-CC-AT-G--GA---C-TT-GATTT--AACCT--CA-GATGACAGAC-GGATTTTTGGT-CAGAC--TATT-TAAG-AGAT-CGTCAAA-TGTTTT-AGAATGGGTGC--AGTATAC-ACAATAAAAG--TG-TTAGA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATAT---ATGACTCA----------------------AATAAAAAG-----AAC--C-GCAAAATTATA--TA-AACAAAAAGCTG-CTCATT-TCCT
gi|8 : AATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATCGAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGT-ATA-AT-GTCGTGGCGCTTGGATATTTC-CC-TAA-CTTGTATTA-TA-------TCTGTTTAGTTTGTATTCATGTAGATCTG---TGCC--T-AGTTG-A-GTTATTTGGG-CCGAT-G--GATCTC-TTTGATTT--AACCT--CA-GA-------C-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
gi|9 : ctttaAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATAT-----TGTTATATA--AT-GTGG-GCTTGGATATTTTCCC-TAAACTTGT-TTA-TTGTTTAGATCTG------------------------C---TGC---TCAGTTG-A-GTTATTTGGC-CG-AT-G--GATCTC-TT-GATTT--AACCT----------CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 111 111 11 1111 2222222222222222222 99999999999999999999999999999999999999999999999999999999999 222 111 111 333 22222 11 1 9999999999999999999999 3333333333333 11 111111 1 11 11 333333 11 111 11 11 2 0000000000000000000000000000 1111 2 1111 11 11 22222 6666666666666666 1111 444444444 22222 111 222222222222 11 1 11 1 2 555555555 11 2222 1111 11 11 11 11111 11111 1 1 11 1 11 22222222 11111 11 1 1 1 1 1 1 11 22 111 1 11111 5555555555555555555 1 1 1 22222 11 1 1 1 11 3333333333333333333 1111111111
lowQualScore : 444 8 444 0 8 8 99 11 8 8 8 8 5 8 7777 0 6 1111111111111111111 8 11111111111111111111111111111111111111111111111111111111111 111 2 6 6 7 6 6 6 99 1 6 6 777 99 6 666 6 6 99 6 6 6 6 6 2 99 6 111 6 6 88888 99 00 3 7 5 6 0000000000000000000000 77 6666666666666 99 6 00 6 6 8 88 666 3 22 8 0 666666 8 5 8 3 6 11 0 66 44 11 111111 66 8 444 11 44 0 8888888888888888888888888888 0 8 9999 88 8 0 8 0 3 8 4444 8 8 6 55 88 3 00000 99 8888888888888888 99 99 4444 77 6 333333333 7 44 5 00000 5 222 5 77 77 1 777777777777 66 99 6 6 6 99 1 0 11 8 8 8 0 0 8 0 8 88 8 0 777 8 0 8 333333333 11 0000 7777 11 33 3 33 55555 0 88888 8 8 8 0 88 0 0 33 0 2 33 77 11111111 88888 3 33 3 0 0 0 0 0 3 7 44 00 1 111 0 2 77777 9999999999999999999 0 0 2 8 0 00000 5 11 3 0 66 8 3 6 6 6 1 6 1 6 6 6 6 6 6 6 6 6 6 99 6 5 5 4 3 55 5 8888888888888888888 1 6 5555555555 3 1 222
lowQualScore : ... . ... . . . .. .. . . . . . . .... . . ................... . ........................................................... ... . . . . . . . .. . . . ... .. . ... . . .. . . . . . . .. . ... . . ..... .. .. . . . . ...................... .. ............. .. . .. . . . .. ... . .. . . ...... . . . . . .. . .. .. .. ...... .. . ... .. .. . ............................ . . .... .. . . . . . . .... . . . .. .. . ..... .. ................ .. .. .... .. . ......... . .. . ..... . ... . .. .. . ............ .. .. . . . .. . . .. . . . . . . . . .. . . ... . . . ......... .. .... .... .. .. . .. ..... . ..... . . . . .. . . .. . . .. .. ........ ..... . .. . . . . . . . . .. .. . ... . . ..... ................... . . . . . ..... . .. . . .. . . . . . . . . . . . . . . . . . . .. . . . . . .. . ................... . . .......... . . ...
lowQualScore : 000 0 000 6 0 0 22 00 0 0 0 0 0 0 0000 8 0 4444444444444444444 0 55555555555555555555555555555555555555555555555555555555555 888 5 7 7 3 7 7 7 22 7 7 7 555 22 7 888 7 7 22 7 7 7 7 7 5 22 7 000 7 7 00000 22 22 2 3 5 5 4444444444444444444444 00 4444444444444 22 7 00 7 7 0 88 888 2 22 0 8 000000 0 0 0 2 0 00 6 44 66 00 444444 44 0 888 00 44 0 4444444444444444444444444444 6 0 8888 88 0 8 0 4 2 0 2222 0 0 7 88 33 5 22222 22 8888888888888888 22 22 2222 77 7 333333333 5 00 7 99999 7 999 7 11 99 7 888888888888 77 22 7 7 7 22 7 8 00 0 0 0 6 6 0 8 0 88 0 8 222 0 0 0 888888888 00 0000 0000 00 88 2 88 88888 8 22222 0 0 0 8 88 0 0 88 0 5 22 00 88888888 00000 2 88 2 0 0 0 0 0 3 3 00 00 0 000 0 5 55555 8888888888888888888 0 0 5 0 6 00000 0 00 2 0 88 0 8 7 7 7 3 7 3 7 7 7 7 7 7 7 7 7 7 22 7 7 7 3 0 77 7 2222222222222222222 0 7 7777777777 3 5 000
consensus : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGTTATATAT-AT-GTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAG-----AACA-T-GCAAAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAN-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Reference ( family-2623 ) : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGTTATATAT-AT-GTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAG-----AACA-T-GCAAAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAN-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
gi|1 : GAATTAAACCATCGCGCAAAGCCCAATTACAAACTCCTCATAATCCACCAAAGGGGACTTAT-AATTGATGCATATCTGAAAGT-----TTTAAAAGTGTTTTCATTGAA--T-TTTTT----G----ATTG---TG------------GTGC-GCTTGGATATCTT-T-------------------------TCCG------------------------G---TGCT--TCAGTTGCA-GCCATT-GGC-CC-AT-G--GATCTC-TT-GATTCTCACCCT--CA-GACG-CAGAC-AAATGTTTGGAGCAGACCTTCTT-TCAATAGAT-CGTCATA-TGTTTTTATAAAGTGTGCGCAATATGCCGAAATAAAAAACTA-TTAAA-AATGAGAG--AATATTCTCAAAAA--GTTTTTATTAAAATATATAATGACTTAAGAGTGACATAA-AACAAAACAAATCAAAAGTACATAACAGT-AAAAAAGTACGATTA-AACAAAAAGCTG-CTCATT-CCTTCG-AAATTCACGGCTGATCACAGCG-ACCAG-T-G---AATCATACAG-TGTAAAGAGCACT--ATATTTTTATTTTT--AATCAAGACCATTTCCAACAACAACATCCCTCGTT--AAAG--TTCA-TTGC--ATATTTTTAGACTTCAC-----TA--TGAGT-AGAAG-AA-ACATGACTTC-CTGGGAGT-AACAG-TGAAATTTAAAATC-CTA-CAC-AGTCTAATGATGTTACTT-CCTCCTGTGCGCT--TAAG--CAT---------------TACCT--TGCTTACATAAT----GACCAAAGA-A---C-----ACAAAAAATATCCT-TCACG--TTATTA-ACAAAATA---GAAAA-AACTA--ATTAGGA-----A-----GCATTGTTATTGAAAATATTT--GTCAGTTATGAGAAC-AAGAA-ACAATCCGGAAAAATGTCAGCATGT-CATTG--ACAATTACAAGTAATA-ATTCTTTTCTTCAACTTTAAAAGGGACTCGTTTT-AAAAAGGCACAT--GACACTGACAAAATTAATTGTCGTACAT-GATGCATCACCTAC---------TTGGCGACAACAGAGAATAGAGCAAGACAAGAAACTGGATATATACTC----TTTT--TCTCTT--ACTTTAGATGTAAATAATGGACCTTCA-A-TCAAAA-AATTTACAATA-CCCATCA-TATCTTGAAGAAAGGGGA-TGAGAAA-GCTTGTATATATT-ATTCG-CCAACCTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAAGGT--TT----TTTTTCTTA--TA-CCAATTTT--TTCGCAATTC-AAACC-ACCT-CTTGTCAATCTCTGA-CAGAAATAACCA-GACATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACCAGAAACTCG-A-AGTAAA-CTTCTAGCGCTTACTGG-TTTTGGAATTGCAG---GCAATT-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TATACATCACGTAG-ATAATTACGGGTTTC-TGGGAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-TTAACAAAGTTG-TCTCATG-ATCAA-TAC-T-GCCA-A-TGCCACCT-A-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCATGACTAC--TGTT-TTCATAGTTAAC-TATGGGCATAGTTTCTTGGCTTTACAACCTTTACAAA-TTACCCTCTGCATTTAAGTTAGATATAGAAAATACATCACACATTT
gi|10 : CGAATGAAAAA-----AACA-TTGCAATAGTGCA--TA-AACAAAAA-CTG-CTCATT-TCCTCG-TAATT-ACGGCTGATC--AACGTACCGG-TTG---A--CA-ACAT-TGTGAAGAG-ACT--AAATTTT--TTTTT--AA----GTACATTT-GAA-AACAACATC--TTGGT--AAAG-GTTTA-TTGC--A----------------------A-ATGAGT-AGA-G--A-ATATG-CTGC-TTGGGA-TGAACAG-TGAA--TTAAAA-C-ATA-CA--AGT--AATGATGTTAGTCACCTCATGTGC--T--TAAG--TA----------------TACCT--TG--TACATAAG----AAG-AAAGA-A---------ACAAAAA--ATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AC-TA--
gi|11 : -TCA-A--TTATTA-ACAAAATA--TGAAAA-A--TG--ATTAGGA-----ATTGTAGCAT-ATTGATGAAAATATTT--CTACGTTATGAGAAC-A-GAA-ACAA--CGGGAAA-TATCTACATGTTCATTG--A-GGTT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAA-TAATTGT-GTA-AT-GATGCATCACCTACATGTAC---TTAGCGACAA--GGAAACACAGGAACACAAGAAAGT-GATATATACTC----TTAT--Tgaaaaaatgtgatg
gi|12 : aTACGGGTTTC-TGGAAACATGTCAATGGCATGATGG-ATAATCTTTTCC-C-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTGG--AGTT-TT
gi|12 : CAG-CACTGTCAGTACTGGAGTTTTACGAAGAAGCTTACTTTTACAacgaagaagcttacttttacaatcgacggctgacttttacaatat
gi|13 : tacgggtttctggaaacatgtcaatggcatgatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtcaccggtgcattcgggttcgccttACATGTCAGTGGCATAATGG--TAATCAGTTCC-CAATATTTC-ACAGTGTAAACAAGTTGCCCTCATG-GTCAA-TACTT-GCCACATTCTCACCATG-TGCA-TTCGGG--TTCCGC-CTTCAG-CACT-----TG--AC--TGTTGTTCA--GTTAAC-TCT-GGCACAGTTTCatcgacggctgacttttacaatat
gi|14 : aaatAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AT--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TATTTGTTTTGAAAAT-ATTTT----ATGAT-TT----TGTTATATATAAT-GTGG-GCTTGGATATTTT-TC-
gi|15 : tttatcaA-CA--AGT--AATGATGTTAGTTTCCTCCTGTGCG-T--TAAG--CA----------------TACCT--TG--TACATAAT----GAA-AAAGA-A---------ACAAAAAATAT--T-TCA-G--TTATTA-ACAAAATA---GAAAA-AA-TA--ATTAGGA-----A-----GCATTG-TGATGAActa
gi|16 : -CTCTAG-CACTGTCATTACTAC--TGTT-TTCATGGTTA-------------------TGGCTTTACAACCTTTAC-AA-------------------------ATAGAAAATACATCACACGTTT
gi|17 : cacataccacgtaattctctTCTTGGCTTTTTAACCTTTAC-AA-TTACCTTTAGCATTTAAGTTAAATATAGAA
gi|18 : GAATTAAA---TCG-GCAAA---CAATTACAAACTC-TCATAATC-AC--A
gi|19 : ctctttAAAATTAT---CAA-A-CCCATCA-TATCTTGAAGAAAGGGGGATGAGAAA-
gi|2 : --------TCTG------------------------C---TGCA--TCAGTTG-AAGCCATTTGGC-CC-ATTG--GATCTCATT-GATTTT-AACCCAACA-GACG-CAGAC-AGATTGCTGGA-CAGAC--TATT-TAAG-AAATTCGTGAAAATGGTTT-AGAAGGGTTGC--AATATGT-GAAATAAAA---TA-TTAAA-AAGAGT-T--GATGTTT--AAAAAAAGTTCTTATTAA--T-TATA-TGA-TCAA----------ATGA-AAAACAAA---AAA---------A-T-GCAAAAGTACA--TA-AATAAAT-GCTG-TTCATTCTCCTCG-TAATT-ACGGCTGCTATCAATGTTCTAGATTGCACA--CA-AAAGATGTGAA-AG-CCT--ATATGT--ATTATT--AAC----AACATTTTCAA-AACAACATC----GGTTAAAAG-ATTCACTTGCCAA-ATGTTTA-------TAATTTCA-ATGCGT-AGA-G-AA--CAGG-C-GC-TTCGG-GTGAACAGGTTAAATC-AAAA-C-ATA-GA--A-T--GATGATGTTAGTTACCTCATGTG-G-TCCTAAGTACATGTA------------TACCT--AG--TACATAAT----AAA-AAAGA-AACCC-----CCAAAAAAAATCAT-TCA-------TTA-ACAAAATA--TGAAAATAA-TAGTATT-GTT-----A-----GCATT-TTGATGAAAATATTCTTCTACGTTTTGAGAATTA-GAA-ACAA--CGGGAAATAATCAACATGTTCATTGCAA-AAGT-CAAG-AATA-ATTATTTTCTTCCA-GTTTAAAGAGACTCGTTTTTAAAAAGG-ACATCTGGCA-TGACAAAAT-AATTGT-GTACAAAGATGCATCACCTACAT---TAC-TTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC----TTTT--TTTTTTTTACTTTAGATGTAA-TAATGA--TTT-A-AATCAAAATG--T--CAA-AACTTAT-A-TATCTTGAAGAAAAAGAAATGAGAA--GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTGTAAGAAATACTAGT-TG--TTTGGAAG--T--TTATTATTTTTCCTATTTA-CAAA-TTT--TTCGCAATTCAAAACCAATCT-GTTGTTCATCTCTGA-CAGAAATAACCACGGCATGGCATCAGTTTGTAGATCAAAGTTATCCG-TTTGGTTCAAATGATTAGTCCACTA--CCCTACAAGAAACTCG-ACAGTAAT-CTTCTAGCGCTTACT-----T-GG---TG-AG---A----T--ATTG-TACGATATGTACCAACTTGGGTAATGCAGTTATTG-CAACAATG-----TT-CAAAAAAGTTTA--TTTACATT-CATAGTATA--TACGGGTTTCTTGAAAATAT-TCAATGGC-TAATGATACAATCTTTTCCTT-ATATTC--ACAG-GTAAC-AAGTTG-C--TATGAGTCAA-TAC-TGGCCA-A-TGTCACCG-G-TGCA-TTCGGGGTTT-CGCTTTTCAGCCACT-TCAGTACTACTGTGTT-TTCATGGTTAACTTTTGGGC-----------GCTTTTTAACCTTTAC-AATTTACCCTTAGCATTTAAGCTAAATATAGAAAATACATCACACGTTT
gi|3 : tcaTATTT--CTGCGTTATGAGAAT-A-GAA-ACAA--CGAGGAA-TATCGACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTA-AAAATGGCACAT-TGGCA-TGAC-AAATTAATTGT-GTA-AT-GATGCATCACCTACAT---TTACTTAGCGACAA--GGAAACACAGGAACACAAGAAGT--GATATATACTC----TCTTTATTTTTT--ACTTTATATATAAATAATGA--CTT-A-A-TCAAACTGATT--CAA-A-CTTATCAGTATCTTGAAAAAAAGAGAACGAGAAAGGCTTGT-TAGATTAAT--GCCCAAACTTCATGGTTTAAGAAATACTAGTCTGTTTTTGGAAGGTT--TAA-TATTTTCCCTA--TACCAAATTTTTGTTCGTAATTC-AAAAC-ACCT-GTTGTCAATCTCTGA-CAGAAAGAACCA-GGC
gi|3 : CCAACAAAAAACTCG-A-AGTAAT-CTTCTAGCACTTACTGGGCGT-GGA-----------------CATTG-TACGATATGTA-CAACATGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAACGTTTA--TTTACATCAAGTAG-ATAATTACGGCTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTC-ACAG-GTAAC-AAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTAACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTACTGTGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTTTAACCTGTAC-AA-TTACCCTCAGCATTTTAGTTAAACATAGAAAATAAATCACACGTTTcaacaaaaaactcgaagtaatcttctagcacttactgggcgtggacattgtacgatatgtacaacatgggtaatgcagtactgtcaacaatgttccgaaaacgtttatttacatcaagtagataattacggctttctggaaacatgtcaatggcataatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtaaccggtgcattcgggttcgccttcagcactgtcagtactactgtgttttcatggttaactctgggcatagtttcttggctttttaacctgtacaattaccctcagcattttagttaaacatagaaaataaatcacacgttt
gi|4 : tatttctgcgttatgagaatagaaacaacgaggaatatcgacatgttcattgagattcaagaatatattattttcttcaatttaaaagggactcgtttaaaaatggcacattggcatgacaaattaattgtgtaatgatgcatcacctacatttacttagcgacaaggaaacacaggaacacaagaagtgatatatactctctttattttttactttatatataaataatgacttaatcaaactgattcaaacttatcagtatcttgaaaaaaagagaacgagaaaggcttgttagattaatgcccaaacttcatggtttaagaaatactagtctgtttttggaaggtttaatattttccctataccaaatttttgttcgtaattcaaaacacctgttgtcaatctctgacagaaagaaccagg-----AAAA-T-GCAAAAGTACA--TA-AACAAAATGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGA--TCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATGTTTTTAT--TT--AA----GAACATTT-GAG-AACAACATC--TTGGT--AAAG-GTTTA-TCGC---------------------------ATGAGT-AGA-G--A-ATATG-CTGC-TTGGG-GTGAACAG-TGAA--TTAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGC--T--TAAG--TA----------------TACCT--TG--TACATAAT----AAG-AAAGA-A---------ACAAAAAATA--AT-TC-------ATTA-ACAAAATA--TG-AAA-AA-TA--ATTAGG------A-----TCATTG-TGATGAAAATATTC--GTACGTTATGAGAAT-A-GAA-ACAA--C-GGAAAATATCAACATGTTCATCG--A-GATT-CAAG-AATATATTCTTTTCTTCAG-TTTAAAAGGGACTCG-TTT-AAAAAGGCACAT-TGGCT-TGACAAA--TAATTGT-GTA-AT-GGTGTATCGCCTAC---------TAAGCAACAA--GGAAACACAGGAACACAAGAAACT-AATATAAACTCTTTATTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-GCA-TCAAAATGA-T--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGCTTATTA-T-TTTTTCCTA--T--CAA
gi|5 : aA-T--------TCTG----------------------------TGCTC-TGATTTG-A--CCATT-GTCTCC-AT-GCAAACTTC-T---ATT---AACCT--CAAGACGACAGACCAGATTTT--GA--AGAC--TATTCTA----GAT-CGTCAA--TGTTT--AGAAAGG---C--AATATGT-GAAATAAATG-ACACTTAAATAATGAT-GTAAACAT-----AACAT-GTTT--ATTAACATAT-TA--GATTCAA--------------CTAAA--AACGAAAA---------A-T-GCAAA-GTACA--TATAATAA----CTGGTTCATT-TTATCGCTAAT--ACG-CTGATCTCAA-ATTTTAG-TTG---A--CA-A-AG-TGTGAAAAGGAGTGAATATGCTTATTACTTCAGC---ACACTATTCAAA-AACAA-ATC--CTGGT--AAACTATTCACTTGCT-A-ATGTTTA-------C-----TCTCTGCGTCAGA-ACAACACATG-CTTCATTGGG-GTAAACAG-TTAAATACAAAA-CAATAGCATCAGTTAAATG-TGTTAGTTA-CTCATGTGCGTT--TAAT--GATACCAGACCACTAATATACCTAGTC--TACATAATTAACAAT-AAAGACA---CCATCTACGAGCAA-ATCGTAACA-AACATATTACCCAAAATGATTGAAAA-AA-AA--ATTGGAATCTGTA-----GC-TT-TTGATGAAAAGATTC--CTACGTTATGAGAAT-A-GAGCACAA--CGGGCAAATc
gi|6 : attgtgacccactgcctttgttttctttccaAAATTTT--T-CGCCAATC-AAACC-ATCTTGTTGTCAATCTCTGAGCAGAAATAGCCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-AATGATTAGTCCACTACACCCTACCAGAAACTCGAA-AGTAATACTTCTAGCGCCTACTGG-CGC-GGAATTGCAGCAAA----TACATTGTTACGATATTTA-CAACTT-GGTAATGCAG-TACTA-CAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAAATACGGGTTTC-TGG-GACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACA--GTAACAAAGTTG-CCTCATT-GTCAATTAC-T-GCCA-A-TGTCACCG-GTTGCATTTCGGA--TT-CGC-C-TCAG-CACTGTCATTACTAC--TGTT-TTCATGGTTA-----TGCG--------------TTTACAACCTTTAC-AA-------------------------ATAGAAAATACAT-ACACGTTT
gi|7 : C--AAAGGGA--TAT-GAT-GATG-ATACCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACATGTTTTTTTTAATGATTTTGTTATATTACATGT-AT-GTGG-GCTTGGATATTTT-TCTTAAATTTGT-TTAGTA-------TTTG------------------------GATCTGCTGCTCAGTTG-A-GCCATTTGGC-CC-AT-G--GA---C-TT-GATTT--AACCT--CA-GATGACAGAC-GGATTTTTGGT-CAGAC--TATT-TAAG-AGAT-CGTCAAA-TGTTTT-AGAATGGGTGC--AGTATAC-ACAATAAAAG--TG-TTAGA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATAT---ATGACTCA----------------------AATAAAAAG-----AAC--C-GCAAAATTATA--TA-AACAAAAAGCTG-CTCATT-TCCT
gi|8 : AATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATCGAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGT-ATA-AT-GTCGTGGCGCTTGGATATTTC-CC-TAA-CTTGTATTA-TA-------TCTGTTTAGTTTGTATTCATGTAGATCTG---TGCC--T-AGTTG-A-GTTATTTGGG-CCGAT-G--GATCTC-TTTGATTT--AACCT--CA-GA-------C-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
gi|9 : ctttaAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATAT-----TGTTATATA--AT-GTGG-GCTTGGATATTTTCCC-TAAACTTGT-TTA-TTGTTTAGATCTG------------------------C---TGC---TCAGTTG-A-GTTATTTGGC-CG-AT-G--GATCTC-TT-GATTT--AACCT----------CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAA--CTA-TTAAA-AATAAT-G---ATATTC--AAAAAT-GTTTTTATTAAAATATAT
blockSeqs : . . . . . . . C . . . A G TTTA T TGTTATATTACATGTAT C CCTAACTTGTATTATATCTGTTTAGTTTGTATTCATGTAGATCTG TGC C . A T T G T CA T A T TT AA A CGA C . . C . T A . T . . GA C T GTAA . AA C A A T AATGAAAAACA TG AAACATT . T TG G C C T TAT C TA A CACA . C A G G GA TT TT TC CAC TC . T TA TA C CAAATGTTTATAATTTCAA C ACA CA . A A G G ATAC . A G TC TA A GTCC TA TACCAGACCACTAATA AG . TAAC G C CCATCT T CA A AACA C ATT T C GT A AATTGTA AT TT T . C . T CA . . . T . T CT . ATT . C A ATGTAC . GTG TTTA TA TT A . AAA ATT . A G AG . A . C C TT GT TTATTA TTTA T TG T A A T G C T T AA CA A AC A G GCGT AATTGCAGCAAATAC T C G T T GAGTT A CT A T AT T A T T A A T A C A T T G C T T T T GT C T C G G TG G ACTCTGGGCATAGTTTCT A . TTTACCCTTA A T AAT
blockSeqs : . . . . . . . . . . . C . . A TTGTTATATATAAT . CCCTAAACTTGTTTATTGTTTAGATCTGC TC G . . T . . . . C . . T . . TGA . . . . . . . . G . . G . . TG . T A A . C ACTAAA CG GAACC . . AG . . . T TCT T TT . A . A . G . . TT TA . GT CA . T . G C TAATGTTTACTCTC . GA A . . . G . ATC . . . . . T GTT . TGTA . . . A . ACCC A CA . AT . T . A . A ATCTGTA G . . . . . A . . . . T . . T . AT . . . ATTTAC . GTG . . . A . GCA AT . . . A . . . . C T GC TATTAT TAC T . T . . . . . . . A . A AA . G CGC TGAGAT . . G . T . C . A . AA . A . . . A . C . . . . . . . . . . . . . . G T TG . ACTTTTGGGC T . TTACCTTTA A C AAT
blockSeqs : . . . . . . . . . . . C . . A TGTGTATAATGTC . TCTTAAATTTGTTTAGTATTTGGATC A C . . T . . . . T . . T . . CG . . . . . . . . G . . C . . G . T A A . . . TA AT . . A . . . T TC C TA . A . C . A . . T TA . CA G . C . A . AAA . G A . . . G . TT . . . . . A GT . . . . . A . . T CG . AT . T . A . A AA T . . . . . A . . . . T . . T . AT . . . ATTAC . CTA . . . . . AA AT . . . A . . . . . . . TAATA T . . . . . . . . C A . . T AC . . . . . . C . . . . . A . . . . . A . . . . . . . . . . . . . . G G . . TGCG T . TTACCCTCA T T AAC
blockSeqs : . . . . . . . . . . . C . . . TGTTATATAAT . C C . . T . . . . T . . T . . . . . . . . . . . G . . C . . G . T A . . AT . . G . . . . T . TT . A . . . . . . . . . GA G . . . G . A . G . . . . A . TT . . . . . A T . . . . . G . . . A . GT . T . A . G TA G . . . . . . . . . . . . . T . T . . . . . TG . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G G . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . T . . . . . . . . . . A T . . . . . T . . . . . . . T . A . . A T . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . A . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : *** *** ** ** TGTTATATATGAT****** T** CG* ** ** C** G**** ** T* AAACT******** ** T* TN A***** GA**** CG T** G* AAA************************* G*** TT** ** ** GT*** **************** ** G* ********* AT*** T** A* ATA********* N* ** T* AT* ATAC***** ** GTG* AT*** TTACCCTCA*
originalCons : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTG---TGTTATATAT-AT-GTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAAG-CTA-TTAAA-AATAAT-G--AATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAG-----AACA-T-GCAAAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGAG-ACT--ATATTTTTATTNTT--AAC---GAACATTTCGAA-AACAACATC--TTGGT--AAAG-GTTCACTTGC--A-ATGTTTA-------C-----TA-ATGAGT-AGA-G-AA-ACATG-CTGC-TTGGGAGTGAACAG-TGAAATTTAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCG-T--TAAG--CAT---------------TACCT--TG--TACATAAT----AAN-AAAGA-A---C-----ACAAAAAATATCAT-TCA-A--TTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA-----A-----GCATTGTTGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAATTAATTGT-GTACAT-GATGCATCACCTACAT---T---TTAGCGACAA--GGAAACACAGGAACACAAGAAANTGGATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGATT--CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
finalCons : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT-TTTTT----ATGATATTGTTATATATGAT------GTGG-GCTTGGATATTTT-TC-TAAACTTGT-TTA-T--------TCTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAAAC--TA-TTAAA-AATAATG----ATATTC--AAAAAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAAAACT--------GCAAAAGTACA--TA-AACAAAAAGCTG-CTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTNCCAG-TTGA-----CA-ACAG-TGTGAAGAG-ACT--ATATTTTTATTNTT--AAGA----ACATTTCGAA-AACAACATCT--TGGT--AAAGG-TTCACTTGCAAA-------------------------TGAGT-AGAG---A-ACATG-CTGC-TTGGGAGTGAACAG-TGAATT--AAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCGT---TAAG--CA----------------TACCT--TG--TACATAAT----AAG-AAAGA-A---------ACAAAAAATATCAT-TCAAT---TATTA-ACAAAATAT--GAAAA-AA-TA--ATTAGGATA---------GCATTN-TGATGAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACATT-GGCA-TGACAAAAT-AATTGT-GTACAT-GATGCATCACCTACATAC-----TTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC----TTTT--TCTTTT--ACTTTAGATGTAAATAATGA--CTT-A-A-TCAAAATGAT---CAA-A-CCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AATTACCCTCA-GCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 111 111 11 1111 1 222222222 9999999999999999999999999999999999999999999999999999999999 1111 111 222 111111 111 111 11 1 9999999999999999999999 3333333333 11 1 111111 11 11 1111 11 11 111 11 2 33333333333333333333333333333333333333333 11 2 11 11 11 11 4444444444444444444444444444444444 1111 11 33333333333 1111 222 111 11 33333 1 11 1 11 2 3333333 11 11 1111111 11 222 111 1 1 11 1 11 22222222 11111 11 1 1 1 1 1 1 11 22 111 1 11111 5555555555555555555 1 1 1 22222 11 1 1 1 11 3333333333333333333 1111111111
lowQualScore : 444 8 444 0 8 8 99 11 8 8 8 8 5 7777 88 1 8 111111111 8 6666666666666666666666666666666666666666666666666666666666 7777 6 6 7 6 6 6 99 1 6 6 777 99 6 111 6 6 99 6 6 6 6 6 2 99 6 111111 6 111 99 111 22 3 7 5 6 7777777777777777777777 3 5555555555 99 6 00 6 6 8 0 8 5 3 11 8 0 666666 8 5 8 3 8 8 11 0 0 0 66 7777 1 11 66 8 444 11 999 0 55555555555555555555555555555555555555555 11 8 0 8 0 3 99 11 8 8 8 6 55 88 3 0000000000000000000000000000000000 6 99 99 4444 00 11111111111 6 4444 1 66 333 5 222 5 44 77 1 55555 1 6 99 6 6 6 99 1 1 0 11 8 8 8 0 0 8 44 88 8 6 8 8 0 8 7777777 11 0 8 11 9999999 3 33 444 0 88 444 8 8 8 0 0 8 0 0 33 0 2 33 77 11111111 88888 3 33 3 0 0 0 0 0 3 7 44 00 1 111 0 2 77777 9999999999999999999 0 0 2 8 0 00000 5 11 3 0 66 8 3 6 6 6 1 6 1 6 6 6 6 6 6 6 6 6 6 99 6 5 5 4 3 55 5 8888888888888888888 1 6 5555555555 3 1 222
lowQualScore : ... . ... . . . .. .. . . . . . .... .. . . ......... . .......................................................... .... . . . . . . .. . . . ... .. . ... . . .. . . . . . . .. . ...... . ... .. ... .. . . . . ...................... . .......... .. . .. . . . . . . . .. . . ...... . . . . . . .. . . . .. .... . .. .. . ... .. ... . ......................................... .. . . . . . .. .. . . . . .. .. . .................................. . .. .. .... .. ........... . .... . .. ... . ... . .. .. . ..... . . .. . . . .. . . . .. . . . . . . .. .. . . . . . . ....... .. . . .. ....... . .. ... . .. ... . . . . . . . . .. . . .. .. ........ ..... . .. . . . . . . . . .. .. . ... . . ..... ................... . . . . . ..... . .. . . .. . . . . . . . . . . . . . . . . . . .. . . . . . .. . ................... . . .......... . . ...
lowQualScore : 000 0 000 6 0 0 22 00 0 0 0 0 0 0000 88 2 0 888888888 0 5555555555555555555555555555555555555555555555555555555555 5555 7 7 3 7 7 7 22 7 7 7 555 22 7 000 7 7 22 7 7 7 7 7 5 22 7 888888 7 777 22 777 77 2 3 5 5 2222222222222222222222 2 8888888888 22 7 00 7 7 0 8 0 8 2 88 0 8 000000 0 0 0 2 0 0 00 6 8 8 88 0000 0 00 44 0 888 00 444 0 88888888888888888888888888888888888888888 00 0 8 0 4 2 00 00 0 0 0 7 88 33 5 7777777777777777777777777777777777 7 22 22 2222 33 77777777777 7 2222 7 00 333 7 999 7 11 99 7 77777 0 7 22 7 7 7 22 0 7 8 00 0 0 0 6 6 0 00 88 0 0 0 0 0 0 2222222 00 8 0 00 0000000 2 88 888 8 88 000 0 0 0 8 8 0 0 0 88 0 5 22 00 88888888 00000 2 88 2 0 0 0 0 0 3 3 00 00 0 000 0 5 55555 8888888888888888888 0 0 5 0 6 00000 0 00 2 0 88 0 8 7 7 7 3 7 3 7 7 7 7 7 7 7 7 7 7 22 7 7 7 3 0 77 7 2222222222222222222 0 7 7777777777 3 5 000
consensus : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT----TTTTTA-TGATNTTGT-TATAT---ATG-ATGTGG-GCTTGGATATTTTTC-T-AAACTTGT-TTA-T-T--------CTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAA--A--CTATTAAAAATAAT-GA---TATTC--AAA---AAC-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAAC-AATGAAAAA-----AAC--TGCAAAAGTACA--TA-AACAAAAAGCT-GCTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTACCAG-TTG---A--CA-ACAG-TGTGAAGA-G-ACT--ATATTTTTATT-TTTAA----GAACAT--TTCGAA-AACAACATC--TTGGT--AAA-GGTTCACTTGC-A--------------A--ATGTTTA---T-T-----A---GTAGAG--AACATG-CTGC-TTGGGAGTGAACAG--TGAA--T-TAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCG-T--T----------AAGC-------A------T-ACCT--TG--TACATAAT----AAN-AAAGA-----------A-AC----AAAAAATATCATTCA-GTTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA----TAGCATTNTGAT-GAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAAT-AATTGT-GTACAT-GATGCATCACCTACAT-T-ACTTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC--TTT----T--TCTTTTACTTTAGATGTAAATAATGA--CTT-A-ATCAAAATGA-T---C-AA-ACCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
Reference ( family-2623 ) : GAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT----TTTTTA-TGATATTGT-TATAT---ATG-ATGTGG-GCTTGGATATTTTTC-T-AAACTTGT-TTA-T-T--------CTG------------------------G---TGCT--TCAGTTG-A-GCCATTTGGC-CC-AT-G--GATCTC-TT-GATTT--AACCT--CA-GACG-CAGAC-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-CGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAA--A--CTATTAAAAATAAT-GA---TATTC--AAA---AAT-GTTTTTATTAAAATATATAATGACTCAA----------A-GACAAAACGAATGAAAAA-----AAC--TGCAAAAGTACA--TA-AACAAAAAGCT-GCTCATT-TCCTCG-TAATT-ACGGCTGATCTCAACGTNCCAG-TTG---A--CA-ACAG-TGTGAAGA-G-ACT--ATATTTTTATT-NTTAA----GAACAT--TTCGAA-AACAACATC--TTGGT--AAA-GGTTCACTTGC-A--------------A--ATG---------------A---GTAGAG--AACATG-CTGC-TTGGGAGTGAACAG--TGAA--T-TAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGCG-T--T----------AAGC-------A------T-ACCT--TG--TACATAAT----AAG-AAAGA-----------A-AC----AAAAAATATCATTCA-ATTATTA-ACAAAATA--TGAAAA-AA-TA--ATTAGGA----TAGCATTNTGAT-GAAAATATTC--CTACGTTATGAGAAT-A-GAA-ACAA--CGGGAAAATATCAACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAAT-AATTGT-GTACAT-GATGCATCACCTACA--T-ACTTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC--TTT----T--TCTTTTACTTTAGATGTAAATAATGA--CTT-A-ATCAAAATGA-T---C-AA-ACCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGNT--TTA-TATTTTTCCTA--TA-CAAATTTT--TTCGCAATTC-AAACC-ACCT-GTTGTCAATCTCTGA-CAGAAATAACCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACNAGAAACTCG-A-AGTAAT-CTTCTAGCGCTTACTGG-CGT-GGAATTGCAG---A----T-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAATTACGGGTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-GTAACAAAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCANTACTAC--TGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTNCAACCTTTAC-AA-TTACCCTCAGCATTTAAGTTAAATATAGAAAATACATCACACGTTT
gi|1 : GAATTAAACCATCGCGCAAAGCCCAATTACAAACTCCTCATAATCCACCAAAGGGGACTTAT-AATTGATGCATATCTGAAAGT-----TTTAAAAGTGTTTTCATTGAA-------TTTTT--TGAT----------T---GTG---GTGC-GCTTGGATATCTTT-------------------T--------CCG------------------------G---TGCT--TCAGTTGCA-GCCATT-GGC-CC-AT-G--GATCTC-TT-GATTCTCACCCT--CA-GACG-CAGAC-AAATGTTTGGAGCAGACCTTCTT-TCAATAGAT-CGTCATA-TGTTTTTATAAAGTGTGCGCAATATGCCGAAATAAA--AAACTATTAAAAATGA--GAGAATATTCTCAAA---AA--GTTTTTATTAAAATATATAATGACTTAAGAGTGACATAA-AACAAAACAAATCAAAAGTACATAACAGTAAAAAAGTACGATTA-AACAAAAAGCT-GCTCATT-CCTTCG-AAATTCACGGCTGATCACAGCG-ACCAG-T-G---AATCATACAG-TGTAAAGA-GCACT--ATATTTTTATT-TTTAATCAAGACCAT--TTCCAACAACAACATCCCTCGTT--AAA-G-TTCA-TTGC-ATATTTTTAGACTTCACTATG---------------A---GTAGAAGAAACATGACTTC-CTGGGAGT-AACAG--TGAAATT-TAAAATC-CTA-CAC-AGTCTAATGATGTTACTT-CCTCCTGTGCGCT--T----------AAGC-------A------TTACCT--TGCTTACATAAT----GACCAAAGA-----------ACAC----AAAAAATATCCTTCACGTTATTA-ACAAAATA---GAAAA-AACTA--ATTAGGA-----AGCATTGTTATTGAAAATATTT--GTCAGTTATGAGAAC-AAGAA-ACAATCCGGAAAAATGTCAGCATGT-CATTG--ACAATTACAAGTAATA-ATTCTTTTCTTCAACTTTAAAAGGGACTCGTTTT-AAAAAGGCACAT--GACACTGACAAAATTAATTGTCGTACAT-GATGCATCACCTAC-------TTGGCGACAACAGAGAATAGAGCAAGACAAGAAACTGGATATATACTC--TTT----T--TCTCTTACTTTAGATGTAAATAATGGACCTTCA-ATCAAAA-AA-TTTAC-AATACCCATCA-TATCTTGAAGAAAGGGGA-TGAGAAA-GCTTGTATATATT-ATTCG-CCAACCTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAAGGT--TT----TTTTTCTTA--TA-CCAATTTT--TTCGCAATTC-AAACC-ACCT-CTTGTCAATCTCTGA-CAGAAATAACCA-GACATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-GATGATTAGTCCACTAC-CCCTACCAGAAACTCG-A-AGTAAA-CTTCTAGCGCTTACTGG-TTTTGGAATTGCAG---GCAATT-CATTG-TACGATATGTA-CAACTTGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAAAGTTTA--TATACATCACGTAG-ATAATTACGGGTTTC-TGGGAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACAG-TTAACAAAGTTG-TCTCATG-ATCAA-TAC-T-GCCA-A-TGCCACCT-A-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCATGACTAC--TGTT-TTCATAGTTAAC-TATGGGCATAGTTTCTTGGCTTTACAACCTTTACAAA-TTACCCTCTGCATTTAAGTTAGATATAGAAAATACATCACACATTT
gi|10 : CGAATGAAAAA-----AACATTGCAATAGTGCA--TA-AACAAAAA-CT-GCTCATT-TCCTCG-TAATT-ACGGCTGATC--AACGTACCGG-TTG---A--CA-ACAT-TGTGAAGA-G-ACT--AAATTTTT--T-TTTAA----GTACAT--TT-GAA-AACAACATC--TTGGT--AAA-GGTTTA-TTGC-A--------------A--ATG---------------A---GTAGAG--AATATG-CTGC-TTGGGA-TGAACAG--TGAA--T-TAAAA-C-ATA-CA--AGT--AATGATGTTAGTCACCTCATGTGC--T--T----------AAGT-------A------T-ACCT--TG--TACATAAG----AAG-AAAGA-----------A-AC----AAAAA--ATCATTCA-ATTATTA-ACAAAATA--TGAAAA-AC-TA--
gi|11 : TCA-ATTATTA-ACAAAATA--TGAAAA-A--TG--ATTAGGAATTGTAGCATATTGAT-GAAAATATTT--CTACGTTATGAGAAC-A-GAA-ACAA--CGGGAAA-TATCTACATGTTCATTG--A-GGTT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTT-AAAAAGGCACAT-TGGCA-TGACAAAAT-AATTGT-GTA-AT-GATGCATCACCTACATGT-ACTTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTC--TTA----T--Tgaaaaaatgtgatg
gi|12 : aTACGGGTTTC-TGGAAACATGTCAATGGCATGATGG-ATAATCTTTTCC-C-ATATTTCA-CAG-GTAACAA-GTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTCACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTGG--AGTT-TT
gi|12 : CAG-CACTGTCAGTACTGGAGTTTTACGAAGAAGCTTACTTTTACAacgaagaagcttacttttacaatcgacggctgacttttacaatat
gi|13 : tacgggtttctggaaacatgtcaatggcatgatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtcaccggtgcattcgggttcgccttACATGTCAGTGGCATAATGG--TAATCAGTTCC-CAATATTTC-ACAGTGTAAACAAGTTGCCCTCATG-GTCAA-TACTT-GCCACATTCTCACCATG-TGCA-TTCGGG--TTCCGC-CTTCAG-CACT-----TG--AC--TGTTGTTCA--GTTAAC-TCT-GGCACAGTTTCatcgacggctgacttttacaatat
gi|14 : aaatAATTAAA---TCG-GCAAA---CAATTACAAAGTC-TCATAATC-AT--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TATTTGTTTTGAAAAT----ATTTTA-TGATTTTGT-TATAT---ATA-ATGTGG-GCTTGGATATTTTTC-
gi|15 : tttatcaA-CA--AGT--AATGATGTTAGTTTCCTCCTGTGCG-T--T----------AAGC-------A------T-ACCT--TG--TACATAAT----GAA-AAAGA-----------A-AC----AAAAAATAT--TTCA-GTTATTA-ACAAAATA---GAAAA-AA-TA--ATTAGGA-----AGCATTGTGAT-GAActa
gi|16 : -CTCTAG-CACTGTCATTACTAC--TGTT-TTCATGGTTA-------------------TGGCTTTACAACCTTTAC-AA-------------------------ATAGAAAATACATCACACGTTT
gi|17 : cacataccacgtaattctctTCTTGGCTTTTTAACCTTTAC-AA-TTACCTTTAGCATTTAAGTTAAATATAGAA
gi|18 : GAATTAAA---TCG-GCAAA---CAATTACAAACTC-TCATAATC-AC--A
gi|19 : ctctttAAAATTA-T---C-AA-ACCCATCA-TATCTTGAAGAAAGGGGGATGAGAAA-
gi|2 : -T--------CTG------------------------C---TGCA--TCAGTTG-AAGCCATTTGGC-CC-ATTG--GATCTCATT-GATTTT-AACCCAACA-GACG-CAGAC-AGATTGCTGGA-CAGAC--TATT-TAAG-AAATTCGTGAAAATGGTTT-AGAAGGGTTGC--AATATGT-GAAATAAA--A---TATTAAAAAGAGTTGA---TGTTT--AAA---AAAAGTTCTTATTAA--T-TATA-TGA-TCAA----------ATGA-AAAAC-----AAAAA-----AA---TGCAAAAGTACA--TA-AATAAAT-GCT-GTTCATTCTCCTCG-TAATT-ACGGCTGCTATCAATGTTCTAGATTGCACA--CA-AAAGATGTGAA-A-G-CCT--ATATGT--ATT-ATTAA----CAACAT--TTTCAA-AACAACATC----GGTTAAAA-GATTCACTTGCCA--------------A--ATGTTTATAATTTCA---ATGCGTAGAG--AACAGG-C-GC-TTCGG-GTGAACAGGTTAAA--T-CAAAA-C-ATA-GA--A-T--GATGATGTTAGTTACCTCATGTG-G-TCCT----------AAGT-------ACATGTAT-ACCT--AG--TACATAAT----AAA-AAAGA-----------A-ACCCCCAAAAAAAATCATTCA-----TTA-ACAAAATA--TGAAAATAA-TAGTATT--GT----TAGCATTTTGAT-GAAAATATTCTTCTACGTTTTGAGAATTA-GAA-ACAA--CGGGAAATAATCAACATGTTCATTGCAA-AAGT-CAAG-AATA-ATTATTTTCTTCCA-GTTTAAAGAGACTCGTTTTTAAAAAGG-ACATCTGGCA-TGACAAAAT-AATTGT-GTACAAAGATGCATCACCTACA--TTACTTAGCGACAA--GGAAACACAGGAACACAAGAAAGTG-ATATATACTCTTTTT----T--TTTTTTACTTTAGATGT-AATAATGA--TTTAA-ATCAAAATG--T---CAAA-ACTTAT-A-TATCTTGAAGAAAAAGAAATGAG-AA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTGTAAGAAATACTAGT-TG--TTTGGAAG--T--TTATTATTTTTCCTATTTA-CAAA-TTT--TTCGCAATTCAAAACCAATCT-GTTGTTCATCTCTGA-CAGAAATAACCACGGCATGGCATCAGTTTGTAGATCAAAGTTATCCG-TTTGGTTCAAATGATTAGTCCACTA--CCCTACAAGAAACTCG-ACAGTAAT-CTTCTAGCGCTTACT-----T-GG---TG-AG---A----T--ATTG-TACGATATGTACCAACTTGGGTAATGCAGTTATTG-CAACAATG-----TT-CAAAAAAGTTTA--TTTACATT-CATAGTATA--TACGGGTTTCTTGAAAATAT-TCAATGGC-TAATGATACAATCTTTTCCTT-ATATTC--ACAG-GTAAC-AAGTTG-C--TATGAGTCAA-TAC-TGGCCA-A-TGTCACCG-G-TGCA-TTCGGGGTTT-CGCTTTTCAGCCACT-TCAGTACTACTGTGTT-TTCATGGTTAACTTTTGGGC-----------GCTTTTTAACCTTTAC-AATTTACCCTTAGCATTTAAGCTAAATATAGAAAATACATCACACGTTT
gi|3 : tcaTATTT--CTGCGTTATGAGAAT-A-GAA-ACAA--CGAGGAA-TATCGACATGTTCATTG--A-GATT-CAAG-AATATATTATTTTCTTCAA-TTTAAAAGGGACTCGTTTA-AAAATGGCACAT-TGGCA-TGACAAATT-AATTGT-GTA-AT-GATGCATCACCTACATTT-ACTTAGCGACAA--GGAAACACAGGAACACAAG-AAGTG-ATATATACTC--TCT----TTATTTTTTACTTTATATATAAATAATGA--CTT-A-ATCAAACTGATT---C-AA-ACTTATCAGTATCTTGAAAAAAAGAGAACGAGAAAGGCTTGT-TAGATTAAT--GCCCAAACTTCATGGTTTAAGAAATACTAGTCTGTTTTTGGAAGGTT--TAA-TATTTTCCCTA--TACCAAATTTTTGTTCGTAATTC-AAAAC-ACCT-GTTGTCAATCTCTGA-CAGAAAGAACCA-GGC
gi|3 : CCAACAAAAAACTCG-A-AGTAAT-CTTCTAGCACTTACTGGGCGT-GGA-----------------CATTG-TACGATATGTA-CAACATGGGTAATGCAG-TACTGTCAACAATG-----TTCCGAAAACGTTTA--TTTACATCAAGTAG-ATAATTACGGCTTTC-TGGAAACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTC-ACAG-GTAAC-AAGTTG-CCTCATG-GTCAA-TAC-T-GCCA-A-TGTAACCG-G-TGCA-TTCGGG--TT-CGC-CTTCAG-CACTGTCAGTACTACTGTGTT-TTCATGGTTAAC-TCTGGGCATAGTTTCTTGGCTTTTTAACCTGTAC-AA-TTACCCTCAGCATTTTAGTTAAACATAGAAAATAAATCACACGTTTcaacaaaaaactcgaagtaatcttctagcacttactgggcgtggacattgtacgatatgtacaacatgggtaatgcagtactgtcaacaatgttccgaaaacgtttatttacatcaagtagataattacggctttctggaaacatgtcaatggcataatggataatcttttcccatatttcacaggtaacaagttgcctcatggtcaatactgccaatgtaaccggtgcattcgggttcgccttcagcactgtcagtactactgtgttttcatggttaactctgggcatagtttcttggctttttaacctgtacaattaccctcagcattttagttaaacatagaaaataaatcacacgttt
gi|4 : tatttctgcgttatgagaatagaaacaacgaggaatatcgacatgttcattgagattcaagaatatattattttcttcaatttaaaagggactcgtttaaaaatggcacattggcatgacaaattaattgtgtaatgatgcatcacctacatttacttagcgacaaggaaacacaggaacacaagaagtgatatatactctctttattttttactttatatataaataatgacttaatcaaactgattcaaacttatcagtatcttgaaaaaaagagaacgagaaaggcttgttagattaatgcccaaacttcatggtttaagaaatactagtctgtttttggaaggtttaatattttccctataccaaatttttgttcgtaattcaaaacacctgttgtcaatctctgacagaaagaaccaggAA-----AAA--TGCAAAAGTACA--TA-AACAAAATGCT-GCTCATT-TCCTCG-TAATT-ACGGCTGATC--AACGTACCAG-TTG---A--CA-ACAG-TGTGAAGA-G-ACT--ATGTTTTTATT---TAA----GAACAT--TT-GAG-AACAACATC--TTGGT--AAA-GGTTTA-TCGC-A------------------TG---------------A---GTAGAG--AATATG-CTGC-TTGGG-GTGAACAG--TGAA--T-TAAAA-C-ATA-CA--AGT--AATGATGTTAGTTACCTCATGTGC--T--T----------AAGT-------A------T-ACCT--TG--TACATAAT----AAG-AAAGA-----------A-AC----AAAAAATA--ATTCA-----TTA-ACAAAATA--TGAAAA-A--TA--ATTAGGA----T--CATTGTGAT-GAAAATATTC--GTACGTTATGAGAAT-A-GAA-ACAA--CGG-AAAATATCAACATGTTCATCG--A-GATT-CAAG-AATATATTCTTTTCTTCAG-TTTAAAAGGGACTCGTTT--AAAAAGGCACAT-TGGCT-TGACAAA-T-AATTGT-GTA-AT-GGTGTATCGCCTAC---T-A---AGCAACAA--GGAAACACAGGAACACAAGAAACTA-ATATAAACTC--TTTATTTT--TCTTTTACTTTAGATGTAAATAATGA--CTT-GCATCAAAATGA-T---C-AA-ACCTATCA-TATCTTGAAGAAAGGGGAATGAGAAA-GCTTGT-TAGATT-AT--G-CCAAACTGCATGCTTTAAGAAATACTAGTCTG-TTTTGGAAGGCTTATTA-T-TTTTTCCTA--T--CAA
gi|5 : A-T-T--------CTG----------------------------TGCTC-TGATTTG-A--CCATT-GTCTCC-AT-GCAAACTTC-T---ATT---AACCT--CAAGACGACAGACCAGATTTT--GA--AGAC--TATTCTA----GAT-CGTCAA--TGTTT--AGAAAGG---C--AATATGT-GAAATAAATGA--CACTTAAA--TAAT-GA---TGT----AAACATAAC-ATGTTTATTAACATAT-TA--GATTCA--------------ACTAAA--AACGAAAAA----------TGC-AAAGTACA--TATAATAA----CTGGTTCATT-TTATCGCTAA-T-AC-GCTGATCTCAA-ATTTTAG-TTG---A--CA-A-AG-TGTGAAAAGG-AGTGAATATGCTTATTACTTCA----GCACACTATTCAAA-AACAA-ATC--CTGGT--AAACTATTCACTTGC-T--------------A--ATGTTTACTCTCTGCGTCA---GAACAA--CACATG-CTTCATTGGG-GTAAACAGT-TAAA--TACAAAA-CAATAGCATCAGTTAAATG-TGTTAGTTA-CTCATGTGCG-T--TTAATGATACCAGACCACTAATA------T-ACCTAGTC--TACATAATTAACAAT-AAAGACACCATCTACGA-GC----AAATCGTAACAAACA---TATTACCCAAAATGATTGAAAA-AA-AA--ATTGGAATCTGTAGC-TTTTGAT-GAAAAGATTC--CTACGTTATGAGAAT-A-GAGCACAA--CGGGCAAATc
gi|6 : attgtgacccactgcctttgttttctttccaAAATTTT--T-CGCCAATC-AAACC-ATCTTGTTGTCAATCTCTGAGCAGAAATAGCCA-GGCATTGCACCAGTTTGGAGATCGAAG-TATCCGTTTTAGTTC-AATGATTAGTCCACTACACCCTACCAGAAACTCGAA-AGTAATACTTCTAGCGCCTACTGG-CGC-GGAATTGCAGCAAA----TACATTGTTACGATATTTA-CAACTT-GGTAATGCAG-TACTA-CAACAATG-----TTCCGAAAAAGTTTA--TTTACATCACGTAG-ATAAATACGGGTTTC-TGG-GACATGTCAATGGCATAATGG-ATAATCTTTTCC-C-ATATTTCAACA--GTAACAAAGTTG-CCTCATT-GTCAATTAC-T-GCCA-A-TGTCACCG-GTTGCATTTCGGA--TT-CGC-C-TCAG-CACTGTCATTACTAC--TGTT-TTCATGGTTA-----TGCG--------------TTTACAACCTTTAC-AA-------------------------ATAGAAAATACAT-ACACGTTT
gi|7 : C--AAAGGGA--TAT-GAT-GATG-ATACCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACATGTTTTTTTTAATGATTTTGT-TATATTACATGTATGTGG-GCTTGGATATTTTTC-TTAAATTTGT-TTAGTAT--------TTG------------------------GATCTGCTGCTCAGTTG-A-GCCATTTGGC-CC-AT-G--GA---C-TT-GATTT--AACCT--CA-GATGACAGAC-GGATTTTTGGT-CAGAC--TATT-TAAG-AGAT-CGTCAAA-TGTTTT-AGAATGGGTGC--AGTATAC-ACAATAAA--A--GTGTTAGAAATAAT-GA---TATTC--AAA---AAT-GTTTTTATTAAAATAT---ATGACTCA----------------------AATAAAAAG-----AAC--CGCAAAATTATA--TA-AACAAAAAGCT-GCTCATT-TCCT
gi|8 : AATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TATCGAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT----TTTTTA-TGATATTGTGTATA----ATG-TCGTGGCGCTTGGATATTTCCC-T-AA-CTTGTATTA-TAT--------CTGTTTAGTTTGTATTCATGTAGATCTG---TGCC--T-AGTTG-A-GTTATTTGGG-CCGAT-G--GATCTC-TTTGATTT--AACCT--CA-GA-------C-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAA--A--CTATTAAAAATAAT-GA---TATTC--AAA---AAT-GTTTTTATTAAAATATAT
gi|9 : ctttaAATTAAA---TCG-GCAAA---CAAGTACAAAGTC-TCATAATC-AC--AAAGGGA--TAT-GAT-GATG-ATATCTGAAAGTGAAGTTTTAAAA-TGTTTCTTTTGAACAT----TTTTTA-TGATATTGT-TATAT---A---ATGTGG-GCTTGGATATTTTCCCT-AAACTTGT-TTA-T-TGTTTAGATCTG------------------------C---TGCT---CAGTTG-A-GTTATTTGGC-CG-AT-G--GATCTC-TT-GATTT--AACCT--CA-GA-------C-AGATTTTTGGA-CAGAC--TATT-TAAA-AGAT-TGTCAAA-TGTTTT-AGAAAGGGTGC--AATATGC-GAAATAAA--A--CTATTAAAAATAAT-GA---TATTC--AAA---AAT-GTTTTTATTAAAATATAT