lowQualScore : 1111111111111111 11111111111111111111111
lowQualScore : 11 5555555555555555 2222 1 1 1 33 33 44444444444444 1 00000000000000000000000 222 11111111 22 111 11 1 111 11 11 11111 22222222 111 22 1111 111111 2222222222222222222222222 111111111111111111111111 11 66666666666666666666666666666666666 11 11111
lowQualScore : 22 6 1111111111111111 6 9999 5 7 9 0 0 6 44 33 44444444444444 9 77777777777777777777777 1 0 8 8 1 000 666 0 3 33333333 3 3 8 6 88 777 3 9 2 2 3 6 33 0 0 555 33 33 88888 33333333 777 77 8 77 0 8 6666 999999 1 8 6666666666666666666666666 4 666666666666666666666666 2 66 4 888888888 99 00000000000000000000000000000000000 0 00 2 5555 444 66 4 99 5 2 5555 99999 2 6
lowQualScore : .. . ................ . .... . . . . . . .. .. .............. . ....................... . . . . . ... ... . . ........ . . . . .. ... . . . . . . .. . . ... .. .. ..... ........ ... .. . .. . . .... ...... . . ......................... . ........................ . .. . ......... .. ................................... . .. . .... ... .. . .. . . .... ..... . .
lowQualScore : 00 0 0000000000000000 0 5555 0 3 2 0 0 5 55 22 55555555555555 0 00000000000000000000000 4 8 0 0 4 666 444 8 2 88888888 8 2 0 0 00 555 2 2 5 5 0 5 88 0 2 888 88 88 55555 22222222 555 55 0 00 8 0 0000 888888 4 0 6666666666666666666666666 4 000000000000000000000000 9 33 4 000000000 88 44444444444444444444444444444444444 1 77 9 3333 444 99 2 44 0 5 3333 44444 7 4
consensus : ATTATGTTTGTTT-GAGTA---GAA----CGAATGAGATTACATAAATGTATTTATTAAA-GGT-TCTAATAACACGTGCTCGTGTTTATATCTGC--AACATCTATTG-GGTAGCCTGATACGTGTCAC---------------------CTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGG--TTTTAACTGACCACGGTNAGCGAGTAG--AA--TTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACNTG--TATT--TTGACTTATCA--T--TGA--T-A---ACTTG---TTTTT-AT-TTTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AACTGNA----TAATNAAA-CTG-CA--CNTTCAGAGCGCTTCCATATC---------C--TA----TA---T----GT-T---TTGTGTT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----GAGTGG---AACGAA-TNAGAACATAA
Reference ( gi|2 ) : ATTACATCTGTTTTGAATGACTGAATACACAAATAA-ATTATAGAAATGTATTTATTAAA-GGT-TCTAATAAC-TGTGCTCGTGTT-ATATCTGC--AA-ATCTA--G-GGTAGCCTAATACGTGTC-----------------------CTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGG--ATTTAACTGACCACGGTCAGTGAGTTG--AA--TTTGAAAGCCATT-CAAAGGCTC-GTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTTCTTG--TATT--TTGACTTATCA--T--TGA--T-A---ACTTG---TTCTT-A--TTTGT-AGAAA--GGAAGACTA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AACTGTA----TAATAAAA-CTG-CA--CTTTCAGAGCGCTTCCATATC---T-----C--TA----TA---T----GT-T---TTGTGTT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----GAGTCG---AACGAA-TAAGAACATAA
gi|4 : ATTATGTTTGTTT-GAGTA---GAA----CGAATAAGA--ACATAAATGTATTTTTGAAA-GGT-TCTAATAACACGTGCTCGTGTTTATATCTGC--AATATATT--G-GGTAGCCTAATACGTGTCAC---------------------CTTGTCAGGTGGCATCTAA-AT-ATCAATTATACGGG--TTTTAACTGACCACGGTCAGTGAGTAG--AA--TGTGAAAGCCATT-CGAAGGCTC--TTTTAGT---GCAGACAACTTACTCCCATCCACCCAACC--AT-GTTTTACTTG--TATT--TTGATTTATCA--T--TGA--T-A---ACTTG---TTTTT-AT-TTTGT-AGAAA--TTAAGACAA----ACGGA-ACTGAGGATTGTTT-T-----TT-G-AATGTGTG-TA-GAACACATGATTAACTGAA----TAATTAAA-CTG-CA--CGCTCAAAGAGC
gi|3 : ttataaTGA-ATTATATA--TGTATTTATTAAACGGT-T-TAATAACACGTGCTCGTGTTTATATCTGT--CA-ATCTATTG-GGTAGCTAGATACGTGTCACCTTGTCACCTCTACGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTTATTGTACGGG--TTTTAACTGA-CA-GGTTAGTGAGTAG--AT--TTTGGAAG-CATT-CGAAGGCTCTTTTTTAGTGGGGCAGAC-ACTTACGCCCAC---CCCGCCC--AT-GATTACTGTGTTTTTT--TTGACTTATCA--TGCTGA--TAA---ACTTG---TTTTT-ATTTTTGTAAGAAA--TGAAGACAA----ACCGA-ACTGAGAATTG--T-TTCTTAAT-G-AATGTTTG-TA-GA----ATG---AACTGAA----T-ATAAA
gi|8 : tgtgtgataagggcctgtaggtgggatctatctggcactactttctgtgAAATGTATTGATTGAA-AACATTTAAACAC--GTGCACGTGCT--TCTTTTCTTACCATCTA--TTGGTTGT-TGGTATTTGTCAT---------------------CTAGTCATGTGACATT--A-AT-ATTCATAGCCCGTGCTGTTGGA--GCCTAC-ATAAGCATATAC--AG--TT--AAACCCATT-CGAAGGCTC-TTTc
gi|1 : tgttttataaatgtttcatatttattagaacatATGTATT-ATTAAA-GGT-TCTAATAAC-CGTGCTCGTGTTTATATCTGC--AA--TTTATTG-GGTAGC-TAATACGTGTCAC---------------------CTTGTCAGGTGACATCTAA-AT-ATTCATTGCAAGGG--ATTTAACTGACCACGGTCAGTGAGTTG--AA--TTCGAAAGCCATT-CGAAGGCTC-GTTTTAGT---GCAGACAACTGACGCCCACCCACTCGCCC--AT-GCTTTACTTG--TATT--TTGACTTATCA--T--TTA--T-A---GCTTG---T--TT-AT-TTTGT-AGAAA--GGAAGACTA----AAGTA-ACTGAAAA-TG--T-T-----GT-GAAA----TG-TA-GA----ATG---AACTGTA----TAATTAAA-CTG-CA--CTTTCAGAGCGCTT-CATATC---C-----TAATA----TA---T----GTGT---GTGTGCT--TA-TTTT-----T---AAA--TTA--TTT-ACTGTTCGTTT----GAGTAG---AACGAA-TAAGAACATAA
gi|5 : gtgtgtgcataaaggtaaaatgtgaatttgggattgtattgggtttgtatttC-----------------------CTAGTCAGTTGA-ATTTAATATTGTTCTTAGCACGGT--TGTTA---GGCC-CGGTAAGGTATTTGTCAAGGTTTAAAACTCATTACGAAGGCTT--TTCTCGT---GCAG-----CTATCCCCCCCCCCCC-CCCGGATCGCTTTATATA--TACTAGTGAATTTGTTACTT--TGAAAT-ACTTATTTGCTATTCTTTA--TTTGT-AGAATTTGGAAGAGAAGTGCATGAA-A--GAAAG-CA--T-T-----AT-A-CAC---TG-TCTGAC---ATT---ACTTGTA-----AGTTAAA-CTATCA--CATT-AGAGCGCTTC-ACATC---------C--TA----TT---TTAA-GTGT---TTGTGTT--TA-TTT-A----T---AA----TAATTTT-A-TGT--GTTT----GAGTGA---AACGAA-T-AGAACA
gi|6 : TT-A--TT-AC-AGAAA--G-AAGTTAA----ATGGACGCTGAAA--------T-----G--A-AA----TG-TA--------T------TTGTACGT-TAATAAA---TG-CGAGCATACA-AGCGCTTC--TTTC---A-----C--TAAATACA---T----GTAC---GTGTGTTGTTA-TGTTG----T---AAA--TAA--TTT-A-TGTTCGTTTTAAATAGTGA---AACGAA-TTAGAACATAAga
gi|14 : ctAAAA-TG--TAT-----GTAG-AA----TGGTA-GA----ATG---AACTGAA----TAATGAAA-CTG-CA--CTTTCAGAGCGCCTC-ATATC---C-----TAATA----TA---C----GTGT---TTCTGCT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----CAGTAG---AACGAA-TAAGAACATAAtcataatcagaacttatcagcaccaacatcacaatatcagtgattatcagcaaaaaatattaatgacattgtcagtatattttccgtcaagta
gi|10 : -TG--T-T-----AT-G-TA----TA-TA-G------T------CTGTA----TATTAAA--CTG-CA--AAACGAGATCGTTTCTACACC---TAATAGC--TA----TA---TCTTCGT-G---TTGTAAT--TA-TTTTA----T---AAA--TGA--TTT-A-CAAACTTTT----GAGT-G---AATGAA-TAAG
gi|15 : tctttttgtagatcgtaaagatttggggaaatacagaaaaactataatatttG--T-T-----AT-A-TA----TG--A-AA----GTG---AA----------AATAAAATCTG-AG--CTTTT----CGCTTCC-TATC---------C--TA----TACAAT----GC-G---TTGTTTT--TT-TTATA----TGGTAAA--TGG--TTT-A-TGTTCGTTT----GCGTGA---AACGAATTATGAACAGAA
gi|17 : gagactgtg-T-----GT-G-AA----TG-TA-GA----ATG---AA-TGAAGAAATAATAAAA-TTA------------------TCCGTGT------------------------------------TTGTGCT--TA-CATTG----T---AAA--TTA--TTT-A-TGTTCGGTT----GAACTG----GTGAA-TTAGAACATAA
gi|18 : A----TAATTAAA-CTG-CA--CTTTCAGAGCGCTTC-ATATC---C-----TAATA----TA---C----GTGT---TTGTGCT--TA-TTTTA----T---AAA--TTA--T------GTTTGTTT----GAGTAG---AACGAA-TAAGAACATAgtc
gi|9 : aGCGCTTC--TTTC---A-----C--TA----AA---T----AC-T---T-GTGTTGTTA-TGTTAATTGT---AAA--TAA--TTT-A-TGTTCGTTT----TAATTGTGAAACGAA-TTAGAACATAA
gi|19 : CGCCTCC-TATC---------C--TA----TA---T----AT-TGCGTTGT-TT--TA-TATGG----T---AAA--TGA--TAT-A-TGTTCGTTT----GAGT-G---AAtcagaatctatcagcaccattaacacaatatcagtgattatcagaaattatcagcaaaaaatgacattctcagtacattttccgtccagtag
gi|11 : tgcaaaataaaatctgagcgcatTTTCACATCCTAT-----C--TAACA-TA---C----GT-T---T-GTGTT--TA-TTTCA----T---AAACGTTGGTTTT-A-TTTTGGTTT----GAGTGA---AAAGAA-TAAGAACA
gi|16 : ttgacgaattcggagggaagtgcaagaaaagaaaatgtatactttgtgctaaattattcaaaataattaaattacgcaaaagattgA----CA---T----GT-G---CTGT-----TA-TTGTA----------A--TCA--TTT-A-TGTTTGTTT----GAGTGA---AACGAA-TTAGAACGTAA
gi|7 : ataaatgcgagcatataagtgagaccttccctacaac-T---TTGTGTT--TA-TTTCA----T---AAATGTTAG-TTTGA-TTTTGGTTT----GAGTGA---AAAGAA-TTAGAACAacacaaatcatcatcaag
gi|20 : ttaaaattgatttcattttgttattctgtatttgacgaattcagagagaaatgcatgaaaagaaaatgtatactttgtgctacattattcgaaataattcagtttcgcataagattgatttacatcctatttaactgTGTGTTG-TAATGTTG----T---AA--------TTT-A-TGTTCGTTT----GAGTGA---AACGAA-TTAGAACATAA
gi|13 : ttactaaatacgTTTA----T---AAA--T-A--TTCCA-TATTCGTTT----GAGTGA---AACGAA-TTAGAACCTAAag
gi|4 : TTA----T---AAA--TTA--T------GTTTGTTT----GAGTAG---AACGAA-TAAGAACATAAatgtattgattgaaaacattcaaacacgtgtacgttcttcttgtcttaccatctatatattggttgatgtcatttagtcaggtgacattaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AACGAAAATTATTGCTAATAAAGGCGAGCATACAAGCGCTTCTCACTACATATACTTGGAATTTAAACGCGTATACTCACGTCGTAAGTAAATTTACCTCATCCGTTATATCACGAATTATAATAACATAAAACAGCAATTTA
Unaligned ( gi|21 ): AAAAAAATGGCACTCTCAGTATATTTTCCGTTCAG
Alignments
lowQualScore : 1 33333333333 2222 1 111 1111 444444444444444444444 111 11 111 11 11 11 11111 111111 1111 1111 11 11111 2222 1111 11111 111111 111 33333333333333333333333333333333333333 11 1111111
lowQualScore : 0 3 00000000000 6 6666 0 7 99 6 6 1 3 7 6 99 7 1 111 0000 888888888888888888888 2 1 5 6 2 6 7 99 1 4 111 6 0 1 1 6 33 444 0 5 0 3 11 8 11 1 11 33333 8 8 0 6 6 999999 6 0000 4444 6 00 66 4 11111 4 4 3333 4 4 2222 9999 44 1 22222 1 6 77 44 111111 44 666 99999999999999999999999999999999999999 0 00 2 5555 444 4444444 5 2 5555 444 2 3 2
lowQualScore : . . ........... . .... . . .. . . . . . . .. . . ... .... ..................... . . . . . . . .. . . ... . . . . . .. ... . . . . .. . .. . .. ..... . . . . . ...... . .... .... . .. .. . ..... . . .... . . .... .... .. . ..... . . .. .. ...... .. ... ...................................... . .. . .... ... ....... . . .... ... . . .
lowQualScore : 7 3 00000000000 4 8888 8 2 22 7 7 0 2 3 7 22 7 0 777 3333 666666666666666666666 1 7 7 7 2 7 3 22 0 8 777 7 3 7 0 7 88 000 8 6 6 2 00 0 00 0 00 00000 0 0 8 7 7 222222 7 0000 2222 7 11 99 4 11111 4 4 3333 4 4 5555 5555 33 0 55555 0 2 99 66 222222 22 999 88888888888888888888888888888888888888 8 00 7 3333 444 9999999 0 5 3333 444 5 6 7
consensus : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATACGTGTCA---------------------CCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTT--TACTTGTATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCCATATC------C---TA----T-----A---T----GTGT---TTGTGTT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
Reference ( family-2619 ) : ATTATGTTTGTTT-GAGTA---GAA----CGAATGAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATACGTGTCA---------------------CCTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGTT-TTAACTGA--CCACGGTNAGCGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTT--TACNTGTATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CA--CNTTCAGAG--CGCTTCCATATC------C---TA----T-----A---T----GT-T---TTGTGTT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----GA---G-TGGAACGAATNA-GAACATAA
gi|1 : ATGTATT-ATT--AAA-GGT-TCTAATAAC-CGTGCTCGTGTTTA-TATCTG-CAA--TTTAT---TGGGTAGC-TAATACGTGTCA---------------------CCTTGTCAGGTGACATCTAA-AT-ATTCATTGCAAGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTCGAAAGCCATT-CGAAGGCTC-GTTTTAGT---GCAGACAACTGACGCCCACCCACTCGCCC--AT-GCTT--TACTTGTATT--TTGACTTATCA--T--TTAT-A-GCTTG--T-TTA-TT------TTGT-AGAAA--GGAAGACTA----AAGTA-ACTGAAAA-TG--T-T-----GT-GAAA----TG-TA-GA----ATG---AAC-TGTA----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTT-CATATC------CTAATA----T-----A---T----GTGT---GTGTGCT--TA-TTTT-----T---AAA--TTA--TTT-ACTGTTCGTTT----GA---G-TAGAACGAATAA-GAACATAA
gi|10 : gtgtgtgcataaaggtaaaatgtgaatttgggattgtattgggtttgtattt-TG--T-T-----AT-G-TA----TA-TA-G------T------C-TGTA----TA-TTAAA-CTG--CA--AAACGAGAT--CGTTTCTACACCTAATAGC---TA----T-----A---TCTTCGT-G---TTGTAAT--TA-TTTTA----T---AAA--TGA--TTT-A-CAAACTTTT----GA---G-T-GAATGAATAA-
gi|11 : tctttttgtagatcgtaaagatttggggaaatacagaaaaactataatatttA----TAATTAAA-TTA--CG--CA---AAAGATTGTTTC-ACATC------C---TA----TCTAACA---T----ACGT---TTGTGTT--TA-TTTCA----T---AAACGTTGGTTTT-A-TTTTGGTTT----GA---G-TGAAAAGAATAA-GAACA
gi|13 : ttgacgaattcggagggaagtgcaagaaaagaaaatgtatactttgtgctaaattattcaaaTTTA----T---AAA--T-A--TTCCA-TATTCGTTT----GA---G-TGAAACGAATTA-GAACCTAA
gi|13 : ATATTCGTTT-GAGTG---AAA----CGAATTAGA--ACCTAAATGTATTGATTGAAAA-CAT-TC-A--AACACGTGTACGTTCTTCTTGTCT--TACCATCTATATATTGGT----TGA----TGTCA---------------------TTTAGTCAGGTGACAT-TAA-atgtattgattgaaaacattcaaacacgtgtacgttcttcttgtcttaccatctatatattggttgatgtcatttagtcaggtgacattaa
gi|14 : tttataaatattccAAAA-TG--TAT-----GTAG-AA----TGGTA-GA----ATG---AAC-TGAA----TAATGAAA-CTG--CA--CTTTCAGAG--CGCCTC-ATATC------C---TAATA-T-----A---C----GTGT---TTCTGCT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----CA---G-TAGAACGAATAA-GAACATAA
gi|15 : ----ATG---AAAGTGAA-----AATAAAATCTG--AG--CTTTT------CGCTTCC-TATC------C---TA----T-----ACAAT----GC-G---TTGTTTT--TT-TTATA----TGGTAAA--TGG--TTT-A-TGTTCGTTT----GC---G-TGAAACGAATTATGAACAGAA
gi|16 : gagactgtggttatatCTTCCCTACA------A---CA----C-----A---T----GT-G---CTGT-----TA-TTGTA----------A--TCA--TTT-A-TGTTTGTTT----GA---G-TGAAACGAATTA-GAACGTAA
gi|17 : ataaatgcgagcatataagtgagac-T-----GT-G-AA----TG-TA-GA----ATG---AA--TGAAGAAATAATAAAA-TT---------------------------ATC------C---------------G---T----GT-T---T-GTGCT--TA-CATTG----T---AAA--TTA--TTT-A-TGTTCGGTT----GA---ACTGG--TGAATTA-GAACATAAacacaaatcatcatcaag
gi|18 : A----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTT-CATATC------CTAATA----T-----A---C----GTGT---TTGTGCT--TA-TTTTA----T---AAA--------TT-A-TGTTTGTTT----GA---G-TAGAACGAATAA-GAACATAgtc
gi|19 : a-TGCA----AAATAAAATCTGAGCG--CAT--------CGCCTCC-TATC------C---TA----T-----A---T----AT-TGCGTTGT-TT--TA-TATGG----T---AAA--TGA--TAT-A-TGTTCGTTT----GA---G-TGAA
gi|2 : ATTACATCTGTTTTGAATGACTGAATACACAAATAA-ATTATAGAAATGTATTTATT--AAA-GGT-TCTAATAAC-TGTGCTCGTGTT-A-TATCTG-CAA-ATCTA-----GGGTAGCCTAATACGTGTC-----------------------CTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTTGAAAGCCATT-CAAAGGCTC-GTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTT--TTCTTGTATT--TTGACTTATCA--T--TGAT-A-ACTTGTTC-TTA--T------TTGT-AGAAA--GGAAGACTA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGTA----TAATAAAA-CTG--CA--CTTTCAGAG--CGCTTCCATATCT-----C---TA----T-----A---T----GT-T---TTGTGTT--TA-TTTTA----T---AAA--TTA--TTT-A-TGTTCGTTT----GA---G-TCGAACGAATAA-GAACATAA
gi|20 : TGTGTTG-TAATGTTG----T---AA--------TTT-A-TGTTCGTTT----GA---G-TGAAACGAATTA-GAACATAA
gi|3 : ttactaaatacgTGA-ATTATATA--TGTATTTATT--AAACGGT-T-TAATAACACGTGCTCGTGTTTA-TATCTGTCAA--TCTAT---TGGGTAGCTAGATACGTGTCACCTTGTCACCTCTACGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTTATTGTACGGGTT-TTAACTGA---CA-GGTTAGTGA---GT-AGATTTTGGAAG-CATT-CGAAGGCTCTTTTTTAGTGGGGCAGAC-ACTTACGCCCAC---CCCGCCC--AT-GATTACTGTGTTTTTT--TTGACTTATCA--TGCTGATAA-ACTTGTTT-TTATTT------TTGTAAGAAA--TGAAGACAA----ACCGA-ACTGAGAATTG--T-TTCTTAAT-G-AATGTTTG-TA-GA----ATG---AAC-TGAA----TA--TAAA-Cag
gi|4 : tgtgtgataagggcctgtaggtgggatctatctggcactactttctgtgATTATGTTTGTTT-GAGTA---GAA----CGAATAAGA--ACATAAATGTATTTTTG--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAATAT--AT---TGGGTAGCCTAATACGTGTCA---------------------CCTTGTCAGGTGGCATCTAA-AT-ATCAATTATACGGGTT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATGTGAAAGCCATT-CGAAGGCTC--TTTTAGT---GCAGACAACTTACTCCCATCCACCCAACC--AT-GTTT--TACTTGTATT--TTGATTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--TTAAGACAA----ACGGA-ACTGAGGATTGTTT-T-----TT-G-AATGTGTG-TA-GAACACATGATTAAC-TGAA----TAATTAAA-CTG--CA--CGCTCAAAG--AGC
gi|5 : ttataa---------------------CCTAGTCAGTTGA-ATTTAATATTGTTCTTAGCACGGTTG-TTA---GG--CC-CGGTAAGGTATTTGTCAAGGTTTAAAACTCATTACGAAGGCT--TTTCTCGT---GCAG-----CTATCCCCCCCCCCCC-CCCGGATCGCTT--TATATATACTAGTGAATTTGTTACTT--TGAA-ATACTTATTTGCTA-TTCTTTATTTGT-AGAATTTGGAAGAGAAGTGCATGAA-A--GAAAG-CA--T-T-----AT-A-CAC---TG-TCTGAC---ATT---ACT-TGTA-----AGTTAAA-CTAT-CA--CATT-AGAG--CGCTT-CACATC------C---TATTT-T-----A---A----GTGT---TTGTGTT--TA--TTTA----T---AA----TAATTTT-A-TGT--GTTT----GA---G-TGAAACGAAT-A-GAACA
gi|6 : T-TTA-TT--------AC-AGAAA--G-AAGTTAA----ATGGACGCTGAAA--------T-----G--A-AA----TG-TA--------T------T-TGTACGT-TAATAAA---TG--CGAGCATACA-AG--CGCTTC--TTTCA-----C---TAAATAC-----A---T----GTAC---GTGTGTTGTTA-TGTTG----T---AAA--TAA--TTT-A-TGTTCGTTTTAAATA---G-TGAAACGAATTA-GAACATAAga
gi|7 : cACATC------C---TA----TTTA--AC--T----GT-T---T-GTGTT--TA-TTTCA----T---AAATGTTAG-TTTGA-TTTTGGTTT----GA---G-TGAAAAGAATTA-GAACAtcataatcagaacttatcagcaccaacatcacaatatcagtgattatcagcaaaaaatattaatgacattgtcagtatattttccgtcaagta
gi|8 : ttaaaattgatttcattttgttattctgtatttgacgaattcagagagaaatgcatgaaaagaaaatgtatactttgtgctacattattcgaaataattcagtttcgcataagattgatttATTAGA--ACATAAATGTATTGATT--GAA-AACATTTAA--ACACGTGCACGTGCTTC-TTTTCT-TACCATCTAT---TGGTTG--TTGGTATTTGTCA---------------------TCTAGTCATGTGACATT--A-AT-ATTCATAGCCCGTGCTGTTG---GAGCCTACA-TAAGCAT---AT-ACAGTT--AAACCCATT-CGAAGGCTC-TTT
gi|9 : tgttttataaatgtttcatatttG--CGCTTC--TTTCA-----C---TA----A-----A---T----AC-T---T-GTGTTGTTA-TGTTAATTGT---AAA--TAA--TTT-A-TGTTCGTTT----TAATTG-TGAAACGAATTA-GAACATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACGAAAATTATTGCTAATAAAGGCGAGCATACAAGCGCTTCTCACTACATATACTTGGAATTTAAACGCGTATACTCACGTCGTAAGTAAATTTACCTCATCCGTTATATCACGAATTATAATAACATAAAACAGCAATTTA
Unaligned ( gi|21 ): AAAAAAATGGCACTCTCAGTATATTTTCCGTTCAG
Alignments
lowQualScore : 1 2222222222 22 1 111 1111 555555555555555555555 111 11 111 11 11 11 11111 111111 1111 1111 11 11111 2222 1111 1111 111111 22 3333333333333333333 11111 1111111
lowQualScore : 0 3 9999999999 1 2 55 0 7 99 6 6 1 3 7 6 99 7 1 111 0000 666666666666666666666 1 1 5 6 1 6 7 99 1 111 6 0 1 1 6 33 444 0 5 0 3 11 8 0 8 11 11 33333 8 8 0 6 6 999999 6 0000 4444 6 00 66 4 11111 4 4 3333 4 4 2222 9999 44 1 1111 1 5 77 444 222222 33 22 8 555 1111111111111111111 33 2 5 33 00000 66666 4444444 5 2 5555 444 2 0 3 2
lowQualScore : . . .......... . . .. . . .. . . . . . . .. . . ... .... ..................... . . . . . . . .. . ... . . . . . .. ... . . . . .. . . . .. .. ..... . . . . . ...... . .... .... . .. .. . ..... . . .... . . .... .... .. . .... . . .. ... ...... .. .. . ... ................... .. . . .. ..... ..... ....... . . .... ... . . . .
lowQualScore : 7 3 0000000000 0 5 88 8 2 22 7 7 0 2 3 7 22 7 0 777 3333 777777777777777777777 0 7 7 7 0 7 3 22 0 777 7 3 7 0 7 88 000 8 6 6 2 00 0 8 0 00 00 00000 0 0 8 7 7 222222 7 0000 2222 7 11 99 4 11111 4 4 3333 4 4 5555 5555 33 0 1111 0 7 33 888 555555 99 88 6 000 3333333333333333333 77 7 3 77 33333 22222 9999999 0 5 3333 444 5 9 6 7
consensus : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATA---------------------CGTGTCACCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCCATATC-C---TA-----T-----A---T---G--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
Reference ( family-2619 ) : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATA---------------------CGTGTCACCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCCATATC-C---TA-----T-----A---T---G--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
gi|1 : ATGTATT-ATT--AAA-GGT-TCTAATAAC-CGTGCTCGTGTTTA-TATCTG-CAA--TTTAT---TGGGTAGC-TAATA---------------------CGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTCATTGCAAGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTCGAAAGCCATT-CGAAGGCTC-GTTTTAGT---GCAGACAACTGACGCCCACCCACTCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TTAT-A-GCTTG--T-TTA-TT------TTGT-AGAAA--GGAAGACTA----AAGTA-ACTGAAAA-TG--T-T-----GT-GAAA----TG-TA-GA----ATG---AAC-TGTA----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTT-CATATC-CTAATA-----T-----A---T---G--T-GT-G--TGTGCT-----TATTTT-TA-----AA--TTA--TTT-ACTGTTCGTTT----GA---G-TAGAACGAATAA-GAACATAA
gi|10 : gtgtgtgcataaaggtaaaatgtgaatttgggattgtattgggtttgtattt-TG--T-T-----AT-G-TA----TA-TA-G------T------C-TGTA----TA-TTAAA-CTG--CA--AAACGAGAT--CGTTTCTACA-C-C---TAATAGCT-----A---T---A--T-CT-T--CGTGTTGTAATTATTTTATA-----AA--TGA--TTT-A-CAAACTTTT----GA---G-TG-AATGAATAA-
gi|11 : tctttttgtagatcgtaaagatttggggaaatacagaaaaactataatatttA----TAATTAAA-TTA--CG--CA---AAAGATTGTTTC-ACATC-C---TA-----TCTAACA---T---A--C-GT-T--TGTGTT-----TATTTCATA-----AACGTTGGTTTT-A-TTTTGGTTT----GA---G-TGAAAAGAATAA-GAACA
gi|13 : ttgacgaattcggagggaagtgcaagaaaagaaaatgtatactttgtgctaaattattcaaaTTTATA-----AA--T-A--TTCCA-TATTCGTTT----GA---G-TGAAACGAATTA-GAACCTAA
gi|13 : ATATTCGTTT-GAGTG---AAA----CGAATTAGA--ACCTAAATGTATTGATTGAAAA-CAT-TC-A--AACACGTGTACGTTCTTCTTGTCT--TACCATCTATATATTGGT----TGA-------------------------TGTCATTTAGTCAGGTGACAT-TAA-atgtattgattgaaaacattcaaacacgtgtacgttcttcttgtcttaccatctatatattggttgatgtcatttagtcaggtgacattaa
gi|14 : tttataaatattccAAAA-TG--TAT-----GTAG-AA----TGGTA-GA----ATG---AAC-TGAA----TAATGAAA-CTG--CA--CTTTCAGAG--CGCCTC-ATATC-C---TAATA--T-----A---C---G--T-GT-T--TCTGCT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----CA---G-TAGAACGAATAA-GAACATAA
gi|15 : ----ATG---AAAGTGAA-----AATAAAATCTG--AG--CTTTT------CGCTTCC-TATC-C---TA-----T-----ACAAT---G--C-GT-T-----GTT-----TTTTTTATATGGTAAA--TGG--TTT-A-TGTTCGTTT----GC---G-TGAAACGAATTATGAACAGAA
gi|16 : gagactgtggttatatCTTCCCTACA-A---CA-----C-----A---T---G--T-GC-T-----GTT------ATTGTA--------A--TCA--TTT-A-TGTTTGTTT----GA---G-TGAAACGAATTA-GAACGTAA
gi|17 : ataaatgcgagcatataagtgagac-T-----GT-G-AA----TG-TA-GA----ATG---AA--TGAAGAAATAATAAAA-TT---------------------------ATC-C------------------------G--T-GT-T--TGTGCT-----TACATTGTA-----AA--TTA--TTT-A-TGTTCGGTT----GA---ACTG--GTGAATTA-GAACATAAacacaaatcatcatcaag
gi|18 : A----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTTC-ATATC-C---TAATA--T-----A---C---G--T-GT-T--TGTGCT-----TATTTTATA-----AA--------TT-A-TGTTTGTTT----GA---G-TAGAACGAATAA-GAACATAgtc
gi|19 : a-TGCA----AAATAAAATCTGAGCG--CAT--------CGCCTCC-TATC-C---TA-----T-----A---T---A--TTGCGT--TGT-TT-----TATATGGTA-----AA--TGA--TAT-A-TGTTCGTTT----GA---G-TGAA
gi|2 : ATTACATCTGTTTTGAATGACTGAATACACAAATAA-ATTATAGAAATGTATTTATT--AAA-GGT-TCTAATAAC-TGTGCTCGTGTT-A-TATCTG-CAA-ATCTA-----GGGTAGCCTAATA---------------------CGTGTC--CTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTTGAAAGCCATT-CAAAGGCTC-GTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTTCT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTC-TTA--T------TTGT-AGAAA--GGAAGACTA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGTA----TAATAAAA-CTG--CA--CTTTCAGAG--CGCTTCCATATCTC---TA-----T-----A---T---G--T--T-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TCGAACGAATAA-GAACATAA
gi|20 : A-----T-----A---C---G--T-GTGT--TGTA--------ATGTTGTA-----A--------TTT-A-TGTTCGTTT----GA---G-TGAAACGAATTA-GAACATAA
gi|3 : ttactaaATTATATA--TGTATTTATT--AAACGGT-T-TAATAACACGTGCTCGTGTTTA-TATCTGTCAA--TCTAT---TGGGTAGCTAGATACGTGTCACCTTGTCACCTCTACGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTTATTGTACGGGTT-TTAACTGA---CA-GGTTAGTGA---GT-AGATTTTGGAAG-CATT-CGAAGGCTCTTTTTTAGTGGGGCAGAC-ACTTACGCCCAC---CCCGCCC--AT-GA-TTACTGTGTTTTTT--TTGACTTATCA--TGCTGATAA-ACTTGTTT-TTATTT------TTGTAAGAAA--TGAAGACAA----ACCGA-ACTGAGAATTG--T-TTCTTAAT-G-AATGTTTG-TA-GA----ATG---AAC-TGAA----TA--TAAA-Cag
gi|4 : tgtgtgataagggcctgtaggtgggatctatctggcactactttctgtgtgaATTATGTTTGTTT-GAGTA---GAA----CGAATAAGA--ACATAAATGTATTTTTG--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAATAT--AT---TGGGTAGCCTAATA---------------------CGTGTCACCTTGTCAGGTGGCATCTAA-AT-ATCAATTATACGGGTT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATGTGAAAGCCATT-CGAAGGCTC--TTTTAGT---GCAGACAACTTACTCCCATCCACCCAACC--AT-GTTTTACT-TG--TATT--TTGATTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--TTAAGACAA----ACGGA-ACTGAGGATTGTTT-T-----TT-G-AATGTGTG-TA-GAACACATGATTAAC-TGAA----TAATTAAA-CTG--CA--CGCTCAAAG--AGC
gi|5 : ttataaCCTAGTCAGTTGA-ATTTAATATTGTTCTTAGCACGGTTG-TTA---GG--CC-CGGTAAGGTATTTGTCAAGGTTTAAAACTCATTACGAAGGCT--TTTCTCGT---GCAG-----CTATCCCCCCCCCCCC-CCCGGATCGCTTTATA-TA--TACTAGTGAATTTGTTACTT--TGAA-ATACTTATTTGCTA-TTCTTTATTTGT-AGAATTTGGAAGAGAAGTGCATGAA-A--GAAAG-CA--T-T-----AT-A-CAC---TG-TCTGAC---ATT---ACT-TGTA-----AGTTAAA-CTAT-CA--CATT-AGAG--CGCTTC-ACATC-C---TA-----T-----T---TTAAG--T-GT-T--TGTGTT-----TA-TTTATA-----A----TAATTTT-A-TGT--GTTT----GA---G-TGAAACGAAT-A-GAACA
gi|6 : T-TTA-TT--------AC-AGAAA--G-AAGTTAA----ATGGACGCTGAAA--------T-----G--A-AA----TG-TA--------T------T-TGTACGT-TAATAAA---TG--CGAGCATACA-AG--CGCTTC--TTTCAC---TAAATA-C-----A---T---G--T-AC-G--TGTGTTGT---TATGTTGTA-----AA--TAA--TTT-A-TGTTCGTTTTAAATA---G-TGAAACGAATTA-GAACATAAga
gi|7 : cA----TAATTCAG-TTT--CG--CAT-AAGAT--TGATTT-ACATC-C---TA-----T-----T---T---AACT-GT-T--TGTGTT-----TATTTCATA-----AATGTTAG-TTTGA-TTTTGGTTT----GA---G-TGAAAAGAATTA-GAACAtcataatcagaacttatcagcaccaacatcacaatatcagtgattatcagcaaaaaatattaatgacattgtcagtatattttccgtcaagta
gi|8 : ttaaaattgatttcattttgttattctgtatttgacgaattcagagagaaatgcatgaaaagaaaatgtatactttgtgctacattattcgaaATTAGA--ACATAAATGTATTGATT--GAA-AACATTTAA--ACACGTGCACGTGCTTC-TTTTCT-TACCATCTAT---TGGTTG--TTGGTA---------------------TTTGTCATCTAGTCATGTGACATT--A-AT-ATTCATAGCCCGTGCTGTTG---GAGCCTAC-ATAAGCAT---AT-ACAGTT--AAACCCATT-CGAAGGCTC-TTT
gi|9 : tgttttataaatgtttcatatttG--CGCTTC--TTTCAC---TAAA---T-----ACT-T---G--T-GT-TGTTATGTT-----AATT--GTA-----AA--TAA--TTT-A-TGTTCGTTT----TAATTG-TGAAACGAATTA-GAACATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACGAAAATTATTGCTAATAAAGGCGAGCATACAAGCGCTTCTCACTACATATACTTGGAATTTAAACGCGTATACTCACGTCGTAAGTAAATTTACCTCATCCGTTATATCACGAATTATAATAACATAAAACAGCAATTTA
Unaligned ( gi|21 ): AAAAAAATGGCACTCTCAGTATATTTTCCGTTCAG
Alignments
lowQualScore : 1 2222222222 22 1 111 1111 555555555555555555555 111 11 111 11 11 11 11111 111111 1111 1111 11 11111 2222 1111 1111 111111 22 3333333333333333333 11111 1111111
lowQualScore : 0 3 9999999999 1 2 55 0 7 99 6 6 1 3 7 6 99 7 1 111 0000 666666666666666666666 1 1 5 6 1 6 7 99 1 111 6 0 1 1 6 33 444 0 5 0 3 11 8 0 8 11 11 33333 8 8 0 6 6 999999 6 0000 4444 6 00 66 4 11111 4 4 3333 4 4 2222 9999 44 1 1111 1 5 77 444 222222 33 22 8 555 1111111111111111111 33 2 5 33 00000 66666 4444444 5 2 5555 444 2 0 3 2
lowQualScore : . . .......... . . .. . . .. . . . . . . .. . . ... .... ..................... . . . . . . . .. . ... . . . . . .. ... . . . . .. . . . .. .. ..... . . . . . ...... . .... .... . .. .. . ..... . . .... . . .... .... .. . .... . . .. ... ...... .. .. . ... ................... .. . . .. ..... ..... ....... . . .... ... . . . .
lowQualScore : 7 3 0000000000 0 5 88 8 2 22 7 7 0 2 3 7 22 7 0 777 3333 777777777777777777777 0 7 7 7 0 7 3 22 0 777 7 3 7 0 7 88 000 8 6 6 2 00 0 8 0 00 00 00000 0 0 8 7 7 222222 7 0000 2222 7 11 99 4 11111 4 4 3333 4 4 5555 5555 33 0 1111 0 7 33 888 555555 99 88 6 000 3333333333333333333 77 7 3 77 33333 22222 9999999 0 5 3333 444 5 9 6 7
consensus : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATA---------------------CGTGTCACCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCCATATC-C---TA-----T-----A---T---G--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
Reference ( family-2619 ) : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATA---------------------CGTGTCACCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCCATATC-C---TA-----T-----A---T---G--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
gi|1 : ATGTATT-ATT--AAA-GGT-TCTAATAAC-CGTGCTCGTGTTTA-TATCTG-CAA--TTTAT---TGGGTAGC-TAATA---------------------CGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTCATTGCAAGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTCGAAAGCCATT-CGAAGGCTC-GTTTTAGT---GCAGACAACTGACGCCCACCCACTCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TTAT-A-GCTTG--T-TTA-TT------TTGT-AGAAA--GGAAGACTA----AAGTA-ACTGAAAA-TG--T-T-----GT-GAAA----TG-TA-GA----ATG---AAC-TGTA----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTT-CATATC-CTAATA-----T-----A---T---G--T-GT-G--TGTGCT-----TATTTT-TA-----AA--TTA--TTT-ACTGTTCGTTT----GA---G-TAGAACGAATAA-GAACATAA
gi|10 : gtgtgtgcataaaggtaaaatgtgaatttgggattgtattgggtttgtattt-TG--T-T-----AT-G-TA----TA-TA-G------T------C-TGTA----TA-TTAAA-CTG--CA--AAACGAGAT--CGTTTCTACA-C-C---TAATAGCT-----A---T---A--T-CT-T--CGTGTTGTAATTATTTTATA-----AA--TGA--TTT-A-CAAACTTTT----GA---G-TG-AATGAATAA-
gi|11 : tctttttgtagatcgtaaagatttggggaaatacagaaaaactataatatttA----TAATTAAA-TTA--CG--CA---AAAGATTGTTTC-ACATC-C---TA-----TCTAACA---T---A--C-GT-T--TGTGTT-----TATTTCATA-----AACGTTGGTTTT-A-TTTTGGTTT----GA---G-TGAAAAGAATAA-GAACA
gi|13 : ttgacgaattcggagggaagtgcaagaaaagaaaatgtatactttgtgctaaattattcaaaTTTATA-----AA--T-A--TTCCA-TATTCGTTT----GA---G-TGAAACGAATTA-GAACCTAA
gi|13 : ATATTCGTTT-GAGTG---AAA----CGAATTAGA--ACCTAAATGTATTGATTGAAAA-CAT-TC-A--AACACGTGTACGTTCTTCTTGTCT--TACCATCTATATATTGGT----TGA-------------------------TGTCATTTAGTCAGGTGACAT-TAA-atgtattgattgaaaacattcaaacacgtgtacgttcttcttgtcttaccatctatatattggttgatgtcatttagtcaggtgacattaa
gi|14 : tttataaatattccAAAA-TG--TAT-----GTAG-AA----TGGTA-GA----ATG---AAC-TGAA----TAATGAAA-CTG--CA--CTTTCAGAG--CGCCTC-ATATC-C---TAATA--T-----A---C---G--T-GT-T--TCTGCT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----CA---G-TAGAACGAATAA-GAACATAA
gi|15 : ----ATG---AAAGTGAA-----AATAAAATCTG--AG--CTTTT------CGCTTCC-TATC-C---TA-----T-----ACAAT---G--C-GT-T-----GTT-----TTTTTTATATGGTAAA--TGG--TTT-A-TGTTCGTTT----GC---G-TGAAACGAATTATGAACAGAA
gi|16 : gagactgtggttatatCTTCCCTACA-A---CA-----C-----A---T---G--T-GC-T-----GTT------ATTGTA--------A--TCA--TTT-A-TGTTTGTTT----GA---G-TGAAACGAATTA-GAACGTAA
gi|17 : ataaatgcgagcatataagtgagac-T-----GT-G-AA----TG-TA-GA----ATG---AA--TGAAGAAATAATAAAA-TT---------------------------ATC-C------------------------G--T-GT-T--TGTGCT-----TACATTGTA-----AA--TTA--TTT-A-TGTTCGGTT----GA---ACTG--GTGAATTA-GAACATAAacacaaatcatcatcaag
gi|18 : A----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTTC-ATATC-C---TAATA--T-----A---C---G--T-GT-T--TGTGCT-----TATTTTATA-----AA--------TT-A-TGTTTGTTT----GA---G-TAGAACGAATAA-GAACATAgtc
gi|19 : a-TGCA----AAATAAAATCTGAGCG--CAT--------CGCCTCC-TATC-C---TA-----T-----A---T---A--TTGCGT--TGT-TT-----TATATGGTA-----AA--TGA--TAT-A-TGTTCGTTT----GA---G-TGAA
gi|2 : ATTACATCTGTTTTGAATGACTGAATACACAAATAA-ATTATAGAAATGTATTTATT--AAA-GGT-TCTAATAAC-TGTGCTCGTGTT-A-TATCTG-CAA-ATCTA-----GGGTAGCCTAATA---------------------CGTGTC--CTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTTGAAAGCCATT-CAAAGGCTC-GTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTTCT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTC-TTA--T------TTGT-AGAAA--GGAAGACTA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGTA----TAATAAAA-CTG--CA--CTTTCAGAG--CGCTTCCATATCTC---TA-----T-----A---T---G--T--T-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TCGAACGAATAA-GAACATAA
gi|20 : A-----T-----A---C---G--T-GTGT--TGTA--------ATGTTGTA-----A--------TTT-A-TGTTCGTTT----GA---G-TGAAACGAATTA-GAACATAA
gi|3 : ttactaaATTATATA--TGTATTTATT--AAACGGT-T-TAATAACACGTGCTCGTGTTTA-TATCTGTCAA--TCTAT---TGGGTAGCTAGATACGTGTCACCTTGTCACCTCTACGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTTATTGTACGGGTT-TTAACTGA---CA-GGTTAGTGA---GT-AGATTTTGGAAG-CATT-CGAAGGCTCTTTTTTAGTGGGGCAGAC-ACTTACGCCCAC---CCCGCCC--AT-GA-TTACTGTGTTTTTT--TTGACTTATCA--TGCTGATAA-ACTTGTTT-TTATTT------TTGTAAGAAA--TGAAGACAA----ACCGA-ACTGAGAATTG--T-TTCTTAAT-G-AATGTTTG-TA-GA----ATG---AAC-TGAA----TA--TAAA-Cag
gi|4 : tgtgtgataagggcctgtaggtgggatctatctggcactactttctgtgtgaATTATGTTTGTTT-GAGTA---GAA----CGAATAAGA--ACATAAATGTATTTTTG--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAATAT--AT---TGGGTAGCCTAATA---------------------CGTGTCACCTTGTCAGGTGGCATCTAA-AT-ATCAATTATACGGGTT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATGTGAAAGCCATT-CGAAGGCTC--TTTTAGT---GCAGACAACTTACTCCCATCCACCCAACC--AT-GTTTTACT-TG--TATT--TTGATTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--TTAAGACAA----ACGGA-ACTGAGGATTGTTT-T-----TT-G-AATGTGTG-TA-GAACACATGATTAAC-TGAA----TAATTAAA-CTG--CA--CGCTCAAAG--AGC
gi|5 : ttataaCCTAGTCAGTTGA-ATTTAATATTGTTCTTAGCACGGTTG-TTA---GG--CC-CGGTAAGGTATTTGTCAAGGTTTAAAACTCATTACGAAGGCT--TTTCTCGT---GCAG-----CTATCCCCCCCCCCCC-CCCGGATCGCTTTATA-TA--TACTAGTGAATTTGTTACTT--TGAA-ATACTTATTTGCTA-TTCTTTATTTGT-AGAATTTGGAAGAGAAGTGCATGAA-A--GAAAG-CA--T-T-----AT-A-CAC---TG-TCTGAC---ATT---ACT-TGTA-----AGTTAAA-CTAT-CA--CATT-AGAG--CGCTTC-ACATC-C---TA-----T-----T---TTAAG--T-GT-T--TGTGTT-----TA-TTTATA-----A----TAATTTT-A-TGT--GTTT----GA---G-TGAAACGAAT-A-GAACA
gi|6 : T-TTA-TT--------AC-AGAAA--G-AAGTTAA----ATGGACGCTGAAA--------T-----G--A-AA----TG-TA--------T------T-TGTACGT-TAATAAA---TG--CGAGCATACA-AG--CGCTTC--TTTCAC---TAAATA-C-----A---T---G--T-AC-G--TGTGTTGT---TATGTTGTA-----AA--TAA--TTT-A-TGTTCGTTTTAAATA---G-TGAAACGAATTA-GAACATAAga
gi|7 : cA----TAATTCAG-TTT--CG--CAT-AAGAT--TGATTT-ACATC-C---TA-----T-----T---T---AACT-GT-T--TGTGTT-----TATTTCATA-----AATGTTAG-TTTGA-TTTTGGTTT----GA---G-TGAAAAGAATTA-GAACAtcataatcagaacttatcagcaccaacatcacaatatcagtgattatcagcaaaaaatattaatgacattgtcagtatattttccgtcaagta
gi|8 : ttaaaattgatttcattttgttattctgtatttgacgaattcagagagaaatgcatgaaaagaaaatgtatactttgtgctacattattcgaaATTAGA--ACATAAATGTATTGATT--GAA-AACATTTAA--ACACGTGCACGTGCTTC-TTTTCT-TACCATCTAT---TGGTTG--TTGGTA---------------------TTTGTCATCTAGTCATGTGACATT--A-AT-ATTCATAGCCCGTGCTGTTG---GAGCCTAC-ATAAGCAT---AT-ACAGTT--AAACCCATT-CGAAGGCTC-TTT
gi|9 : tgttttataaatgtttcatatttG--CGCTTC--TTTCAC---TAAA---T-----ACT-T---G--T-GT-TGTTATGTT-----AATT--GTA-----AA--TAA--TTT-A-TGTTCGTTT----TAATTG-TGAAACGAATTA-GAACATAA
blockSeqs : T ACTGAATACA A G TT G GA C A C T A T GT C C ATA AGCC CGTGTCACCTTGTCACCTCTA A C T T A G A GC C TTT C T C A TT GGG A G GG C G TT AG TGC A T G T CTTTAT A TTGG GTGC C AT TT A TCTTA A . TGTT G T ACAC GATT AG T GAAA T T AG GAG AACGAG AT TA T . ATAGCTAT AC T G GT GTAAT TGGTA CGTTGGT C . TAAA ATT C A T
blockSeqs : . GAA A G TT T . . . C T A . G T C . AGCT . T C . . T . A . T . . T C . G . A G . . . . . CTT . . . . . . GG . . AT . . . . . TGTG . . C G C A CGT T T T A TTTCAG . CC A . TCTAACAT . . G . GT . TGTTAG G . . . . A .
blockSeqs : T . . T . . . C T A . G C C . AGCC . T C . . T . A . C . . T T . T . . A . . . . . T . . . . . . TG . . A . . . . . C . . . G C A . G . . G TTTCAG . CA A . AATACAT . . . . . . TAAT . . . . . T .
blockSeqs : . T . . . T . A . T . C . GT . T T . . T . . . A . . T C . T . . . . . . . . T . . . . . . TT . . A . . . . . . . . . G C A . A . . A TTTCAG . A . . AATACTT . . . . . . TGA . . . . . A .
blockSeqs : G . . . . . . . . . . . . . A T . . C . . . A . . . . . . . . . . G . . G . . . . . . . . . G C C . A . . G GCTCAA . A . . ATATAC . . . . . . TTA . . . . . T .
blockSeqs : A . . . . . . . . . . . . G C T . T . . A ATTAG . C . . TACAAT . . . . . . TGG . . . . . T .
blockSeqs : . . . . . . . . . T T A . A . . G ATACA . A . . ATATAC . . . . . . TCA . . . . . T .
blockSeqs : . . . . . . . . . T A . A . . A ATAAG . C . . TTTTAA . . . . . . TTA . . . . . A .
blockSeqs : . . . T . T . . A TTTT . A . . CAT . . . . . . TGA . . . . . A .
blockSeqs : T . T . . A AAA . A . . TAT . . . . . . TTA . . . . . T .
blockSeqs : . T . . G AT . . . . TAT . . . . . . TAA . . . . . T .
blockSeqs : . A . . . . . . . . TAC . . . . . . TAA . . . . . T .
blockSeqs : . T . . . . . TTT . . . . . . TA . . . . . T .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** AGCC T**** A* ***
originalCons : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGATTACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATA---------------------CGTGTCACCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCCATATC-C---TA-----T-----A---T---G--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
finalCons : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGA--ACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATA---------------------CGTGTCACCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCAT----TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTTCA-TATC-C---TA-----T-----A---T---G--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACGAAAATTATTGCTAATAAAGGCGAGCATACAAGCGCTTCTCACTACATATACTTGGAATTTAAACGCGTATACTCACGTCGTAAGTAAATTTACCTCATCCGTTATATCACGAATTATAATAACATAAAACAGCAATTTA
Unaligned ( gi|21 ): AAAAAAATGGCACTCTCAGTATATTTTCCGTTCAG
Alignments
lowQualScore : 1 2222222222 11 1 111 1111 444444444444444444444 111 11 111 11 11 11 11111 111111 1111 1111 11 11111 2222 1111 1111 111111 111 222222222222222 11111 1111111
lowQualScore : 0 3 9999999999 1 2 33 7 99 6 6 1 7 7 6 99 7 1 111 0000 888888888888888888888 1 1 5 6 1 6 7 99 1 111 6 0 1 1 6 33 444 0 5 0 3 11 8 0 8 11 11 33333 8 8 0 6 6 999999 6 0000 4444 6 00 66 4 11111 4 4 3333 4 4 2222 9999 44 1 1111 1 5 77 444 222222 33 3 33 9 000 999999999999999 33 2 5 33 00000 66666 4444444 5 2 5555 444 2 0 3 2
lowQualScore : . . .......... . . .. . .. . . . . . . .. . . ... .... ..................... . . . . . . . .. . ... . . . . . .. ... . . . . .. . . . .. .. ..... . . . . . ...... . .... .... . .. .. . ..... . . .... . . .... .... .. . .... . . .. ... ...... .. . .. . ... ............... .. . . .. ..... ..... ....... . . .... ... . . . .
lowQualScore : 7 3 0000000000 0 5 88 2 22 7 7 0 3 3 7 22 7 0 777 3333 666666666666666666666 0 7 7 7 0 7 3 22 0 777 7 3 7 0 7 88 000 8 6 6 2 00 0 8 0 00 00 00000 0 0 8 7 7 222222 7 0000 2222 7 11 99 4 11111 4 4 3333 4 4 5555 5555 33 0 1111 0 7 33 888 555555 99 1 66 2 888 333333333333333 77 7 3 77 33333 22222 9999999 0 5 3333 444 5 9 6 7
consensus : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGA--ACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATACGTGTCA---------------------CCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTT-C-ATATC-C---TA-----T-----A---TG--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
Reference ( family-2619 ) : ATTATATTCGTTT-GAGTG---GAA----CGAATNAGA--ACATAAATGTATTTATT--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAACATCTAT---TGGGTAGCCTGATACGTGTCA---------------------CCTNGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGNT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATTTGAAAGCCATT-CGAAGGCTC-TTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--GGAAGACAA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGNA----TAATNAAA-CTG--CG--CNTTCAGAG--CGCTT-C-ATATC-C---TA-----T-----A---TG--T-GT-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TGAAACGAATNA-GAACATAA
gi|1 : ATGTATT-ATT--AAA-GGT-TCTAATAAC-CGTGCTCGTGTTTA-TATCTG-CAA--TTTAT---TGGGTAGC-TAATACGTGTCA---------------------CCTTGTCAGGTGACATCTAA-AT-ATTCATTGCAAGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTCGAAAGCCATT-CGAAGGCTC-GTTTTAGT---GCAGACAACTGACGCCCACCCACTCGCCC--AT-GCTTTACT-TG--TATT--TTGACTTATCA--T--TTAT-A-GCTTG--T-TTA-TT------TTGT-AGAAA--GGAAGACTA----AAGTA-ACTGAAAA-TG--T-T-----GT-GAAA----TG-TA-GA----ATG---AAC-TGTA----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTT-C-ATATC-CTAATA-----T-----A---TG--T-GT-G--TGTGCT-----TATTTT-TA-----AA--TTA--TTT-ACTGTTCGTTT----GA---G-TAGAACGAATAA-GAACATAA
gi|10 : gtgtgtgcataaaggtaaaatgtgaatttgggattgtattgggtttgtattt-TG--T-T-----AT-G-TA----TA-TA-G------T------C-TGTA----TA-TTAAA-CTG--CA--AAACGAGAT--CGTTT-CTACA-C-C---TAATAGCT-----A---TA--T-CT-T--CGTGTTGTAATTATTTTATA-----AA--TGA--TTT-A-CAAACTTTT----GA---G-TG-AATGAATAA-
gi|11 : tctttttgtagatcgtaaagatttggggaaatacagaaaaactataatatttA----TAATTAAA-TTA--CG--CA---AAAGATTGTTT-C-ACATC-C---TA-----TCTAACA---TA--C-GT-T--TGTGTT-----TATTTCATA-----AACGTTGGTTTT-A-TTTTGGTTT----GA---G-TGAAAAGAATAA-GAACA
gi|13 : ttgacgaattcggagggaagtgcaagaaaagaaaatgtatactttgtgctaaattattcaaaTTTATA-----AA--T-A--TTCCA-TATTCGTTT----GA---G-TGAAACGAATTA-GAACCTAA
gi|13 : ATATTCGTTT-GAGTG---AAA----CGAATTAGA--ACCTAAATGTATTGATTGAAAA-CAT-TC-A--AACACGTGTACGTTCTTCTTGTCT--TACCATCTATATATTGGT----TGA----TGTCA---------------------TTTAGTCAGGTGACAT-TAA-atgtattgattgaaaacattcaaacacgtgtacgttcttcttgtcttaccatctatatattggttgatgtcatttagtcaggtgacattaa
gi|14 : tttataaatattccAAAA-TG--TAT-----GTAG-AA----TGGTA-GA----ATG---AAC-TGAA----TAATGAAA-CTG--CA--CTTTCAGAG--CGCCT-C-ATATC-C---TAATA--T-----A---CG--T-GT-T--TCTGCT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----CA---G-TAGAACGAATAA-GAACATAA
gi|15 : ----ATG---AAAGTGAA-----AATAAAATCTG--AG--CTTTT------CGCTT-C-CTATC-C---TA-----T-----ACAATG--C-GT-T-----GTT-----TTTTTTATATGGTAAA--TGG--TTT-A-TGTTCGTTT----GC---G-TGAAACGAATTATGAACAGAA
gi|16 : gagactgtggttatatA-----C-----A---TG--T-GC-T-----GTT------ATTGTA--------A--TCA--TTT-A-TGTTTGTTT----GA---G-TGAAACGAATTA-GAACGTAA
gi|17 : ataaatgcgagcatataagtgagaccttccctacaac-T-----GT-G-AA----TG-TA-GA----ATG---AA--TGAAGAAATAATAAAA-TT----------------------------ATC-C---------------------G--T-GT-T--TGTGCT-----TACATTGTA-----AA--TTA--TTT-A-TGTTCGGTT----GA---ACTG--GTGAATTA-GAACATAAacacaaatcatcatcaag
gi|18 : A----TAATTAAA-CTG--CA--CTTTCAGAG--CGCTT-C-ATATC-CTAATA-----T-----A---CG--T-GT-T--TGTGCT-----TATTTTATA-----AA--------TT-A-TGTTTGTTT----GA---G-TAGAACGAATAA-GAACATAgtc
gi|19 : a-TGCA----AAATAAAATCTGAGCG--CAT--------CGCCT-C-CTATC-C---TA-----T-----A---TA--TTGCGT--TGT-TT-----TATATGGTA-----AA--TGA--TAT-A-TGTTCGTTT----GA---G-TGAA
gi|2 : ATTACATCTGTTTTGAATGACTGAATACACAAATAA-ATTATAGAAATGTATTTATT--AAA-GGT-TCTAATAAC-TGTGCTCGTGTT-A-TATCTG-CAA-ATCTA-----GGGTAGCCTAATACGTGTC-----------------------CTTGTCAGGTGACATCTAA-AT-ATTCATTGCACGGGAT-TTAACTGA--CCACGGTCAGTGA---GT-TGAATTTGAAAGCCATT-CAAAGGCTC-GTTTTAGT---GCAGACAACTTACGCCCACCCACCCGCCC--AT-GCTTTTCT-TG--TATT--TTGACTTATCA--T--TGAT-A-ACTTGTTC-TTA--T------TTGT-AGAAA--GGAAGACTA----ACGGA-ACTGAAAA-TG--T-T-----GT-G-AA----TG-TA-GA----ATG---AAC-TGTA----TAATAAAA-CTG--CA--CTTTCAGAG--CGCTTCC-ATATCTC---TA-----T-----A---TG--T--T-T--TGTGTT-----TATTTTATA-----AA--TTA--TTT-A-TGTTCGTTT----GA---G-TCGAACGAATAA-GAACATAA
gi|20 : A-----T-----A---CG--T-GTGT--TGTA--------ATGTTGTA-----A--------TTT-A-TGTTCGTTT----GA---G-TGAAACGAATTA-GAACATAA
gi|3 : ttactaaATATATGTATTTATT--AAACGGT-T-TAATAACACGTGCTCGTGTTTA-TATCTGTCAA--TCTAT---TGGGTAGCTAGATACGTGTCACCTTGTCACCTCTACGTGTCACCTTGTCAGGTGACATCTAA-AT-ATTTATTGTACGGGTT-TTAACTGA---CA-GGTTAGTGA---GT-AGATTTTGGAAG-CATT-CGAAGGCTCTTTTTTAGTGGGGCAGAC-ACTTACGCCCAC---CCCGCCC--AT-GA-TTACTGTGTTTTTT--TTGACTTATCA--TGCTGATAA-ACTTGTTT-TTATTT------TTGTAAGAAA--TGAAGACAA----ACCGA-ACTGAGAATTG--T-TTCTTAAT-G-AATGTTTG-TA-GA----ATG---AAC-TGAA----TA--TAAA-Cag
gi|4 : tgtgtgataagggcctgtaggtgggatctatctggcactactttctgtgtgaattATTATGTTTGTTT-GAGTA---GAA----CGAATAAGA--ACATAAATGTATTTTTG--AAA-GGT-TCTAATAACACGTGCTCGTGTTTA-TATCTG-CAATAT--AT---TGGGTAGCCTAATACGTGTCA---------------------CCTTGTCAGGTGGCATCTAA-AT-ATCAATTATACGGGTT-TTAACTGA--CCACGGTCAGTGA---GT-AGAATGTGAAAGCCATT-CGAAGGCTC--TTTTAGT---GCAGACAACTTACTCCCATCCACCCAACC--AT-GTTTTACT-TG--TATT--TTGATTTATCA--T--TGAT-A-ACTTGTTT-TTA-TT------TTGT-AGAAA--TTAAGACAA----ACGGA-ACTGAGGATTGTTT-T-----TT-G-AATGTGTG-TA-GAACACATGATTAAC-TGAA----TAATTAAA-CTG--CA--CGCTCAAAG--AGC
gi|5 : ttataa---------------------CCTAGTCAGTTGA-ATTTAATATTGTTCTTAGCACGGTTG-TTA---GG--CC-CGGTAAGGTATTTGTCAAGGTTTAAAACTCATTACGAAGGCT--TTTCTCGT---GCAG-----CTATCCCCCCCCCCCC-CCCGGATCGCTTTATA-TA--TACTAGTGAATTTGTTACTT--TGAA-ATACTTATTTGCTA-TTCTTTATTTGT-AGAATTTGGAAGAGAAGTGCATGAA-A--GAAAG-CA--T-T-----AT-A-CAC---TG-TCTGAC---ATT---ACT-TGTA-----AGTTAAA-CTAT-CA--CATT-AGAG--CGCTT-C-ACATC-C---TATTT--T-----A---AG--T-GT-T--TGTGTT-----TA-TTTATA-----A----TAATTTT-A-TGT--GTTT----GA---G-TGAAACGAAT-A-GAACA
gi|6 : T-TTA-TT--------AC-AGAAA--G-AAGTTAA----ATGGACGCTGAAA--------T-----G--A-AA----TG-TA--------T------T-TGTACGT-TAATAAA---TG--CGAGCATACA-AG--CGCTT-C-TT-TCAC---TAAATA-C-----A---TG--T-AC-G--TGTGTTGT---TATGTTGTA-----AA--TAA--TTT-A-TGTTCGTTTTAAATA---G-TGAAACGAATTA-GAACATAAga
gi|7 : cA----TAATTCAG-TTT--CG--CAT-AAGAT--TGATT-T-ACATC-C---TA-----T-----T---TAACT-GT-T--TGTGTT-----TATTTCATA-----AATGTTAG-TTTGA-TTTTGGTTT----GA---G-TGAAAAGAATTA-GAACAtcataatcagaacttatcagcaccaacatcacaatatcagtgattatcagcaaaaaatattaatgacattgtcagtatattttccgtcaagta
gi|8 : ttaaaattgatttcattttgttattctgtatttgacgaattcagagagaaatgcatgaaaagaaaatgtatactttgtgctacattattcgaaATTAGA--ACATAAATGTATTGATT--GAA-AACATTTA--AACACGTGCACGTGCTTC-TTTTCT-TACCATCTAT---TGGTTG--TTGGTATTTGTCA---------------------TCTAGTCATGTGACATT--A-AT-ATTCATAGCCCGTGCTGTTG---GAGCCTAC-ATAAGCAT---AT-ACAGTT--AAACCCATT-CGAAGGCTC-TTT
gi|9 : tgttttataaatgtttcatatttG--CGCTT-C-TT-TCAC---TAAA---T-----ACT-TG--T-GT-TGTTATGTT-----AATT--GTA-----AA--TAA--TTT-A-TGTTCGTTT----TAATTG-TGAAACGAATTA-GAACATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACGAAAATTATTGCTAATAAAGGCGAGCATACAAGCGCTTCTCACTACATATACTTGGAATTTAAACGCGTATACTCACGTCGTAAGTAAATTTACCTCATCCGTTATATCACGAATTATAATAACATAAAACAGCAATTTA
Unaligned ( gi|21 ): AAAAAAATGGCACTCTCAGTATATTTTCCGTTCAG