lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11111 444444444 22222 111 11 111 11 333333333333333333 11 222222 3333 2 22222 11 111 333 11 2222 1 5555555555 1 1 2 1 11 1 1 2222 1 777777 11 111 111 2 4444444 22 77777 1 11 11 11 22 1 333333333333333333333 1 33333333333 1 3333333333 1 333333 1 1 111 1 2222 2222 111 222222 4444444444 11 2222 1 222222222 55 222222 444444 1 2222 1 1 444444444 1 8888888888 3333 2 1 11 2 1 1 444 7777777777777777777777777777777777777777777777777777777777 2222 1 1 111 3333333 333333333 33 2 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222222 555555555555 333333 77777777777777777 222 1 1111111111111111111 4444444444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000 222222 44444444444444444 444444
lowQualScore : 7 444444 9999 4 4 33333 4 0 5555555 222222222 5 33333 000 77 1 5 77 6 6 111 2 1 88 6 6 777777777777777777 11 8 111111 8888 7 8 8 00000 8 8 88 11 3 8 888 999 11 0 999 6 8888 8 3 8888888888 7 3 3 3 7 0 33 0 3 6 8888 3 888888 22 777 7 3 3 777 44 7 0 2 888 3333333 00 55555 7 3 9 11 11 11 3 66 0 7 6 777777777777777777777 0 22222222222 0 8 6 1 3 7777777777 5 11 6 111111 3 0 0 444 3 0 1111 99 0 8 0 4444 444 777777 5555555555 88 7 8888 0 444444444 55 0 888888 6 000000 4 0 0000 0 0 000000000 3 3 9999999999 1 0000 7 6 0 2 33 0 0 3 0 6 111 7777777777777777777777777777777777777777777777777777777777 6666 1 3 7 3 888 7 9999999 666666666 55 7 3 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8888 99 111111 999999999999 6 6 888888 5 5 33333333333333333 5 88 111 77 1 8 7777777777777777777 3 666 5 44 5 8888888888888888888888 99999 5 111111111111111111111111111111111111111111111111111111111111111111111111111 111111 6 2 6 22222222222222222 6 5 5 222222
lowQualScore : . ...... .... . . ..... . . ....... ......... . ..... ... .. . . .. . . ... . . .. . . .................. .. . ...... .... . . . ..... . . .. .. . . ... ... .. . ... . .... . . .......... . . . . . . .. . . . .... . ...... .. ... . . . ... .. . . . ... ....... .. ..... . . . .. .. .. . .. . . . ..................... . ........... . . . . . .......... . .. . ...... . . . ... . . .... .. . . . .... ... ...... .......... .. . .... . ......... .. . ...... . ...... . . .... . . ......... . . .......... . .... . . . . .. . . . . . ... .......................................................... .... . . . . ... . ....... ......... .. . . . .......................................................................................................................................................................................................... .... .. ...... ............ . . ...... . . ................. . .. ... .. . . ................... . ... . .. . ...................... ..... . ........................................................................... ...... . . . ................. . . . ......
lowQualScore : 7 333333 4444 4 4 11111 4 1 8888888 999999999 0 33333 000 99 4 7 00 7 7 777 5 7 55 7 7 555555555555555555 22 0 666666 5555 5 0 0 00000 0 0 88 66 8 0 000 444 00 7 333 7 3333 3 3 7777777777 3 3 3 7 3 0 88 0 3 7 3333 3 000000 55 555 0 2 2 555 00 2 2 0 777 3333333 00 33333 3 3 0 00 00 00 8 00 0 0 5 222222222222222222222 0 44444444444 0 0 0 4 8 8888888888 0 66 0 222222 2 0 0 888 2 0 2222 55 2 8 2 0000 000 333333 3333333333 00 3 3333 0 888888888 00 2 888888 0 000000 2 0 2222 0 0 000000000 2 3 7777777777 0 0000 3 7 0 2 88 0 0 2 0 0 777 3333333333333333333333333333333333333333333333333333333333 7777 0 3 0 3 000 3 0000000 777777777 77 3 7 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7777 22 888888 333333333333 7 7 555555 7 7 00000000000000000 7 11 666 33 4 7 1111111111111111111 0 111 1 77 7 1111111111111111111111 44444 7 222222222222222222222222222222222222222222222222222222222222222222222222222 333333 7 8 7 33333333333333333 7 7 7 000000
consensus : NTCTGAGANTCGTTG------TACA----G-T-C-G---TTTGC-CCAGTT--CCG--GATCATGATCAT-GGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-TAC--AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTCAAA-CTT-TT---ATATAA-A--CAT-AACGA-CTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CA-TCGCGCTGGA-TGGAAA--ACGTGCATGTCACT----AAAGT-ATAGAT--CAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAGGTCTT-TCAGCA----ATAT-AATAAA------TATTT-CTTCAAT---GGATGTATTAT---TGCAGTCGAGATGNCTTACGAAA-GAAACGCTACCT-------CATGGTCCAATTCCGGATCAGTCGT----GTCAAACTGCC-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATA----CG----TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATT----ACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATACATTT-TT--TA--AAAAA---T--ATANAATA-NAAGTGGACAG----TAAA-TATACT--AAGTA-TTGTA--TTTCGATT------TACTTCTT-G----GTATTAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTA-CCTA-----AAGGTTATTCCGA-CGAGCTTCGATCC-CACCC--TCGCC-AACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT--ATAATA-ATA-TAT-CATA-AG-AGACT-CAGAGAAAATGAAT----AAT-TTAA-AT-AGG-AGAA-TTTTGA-ATGC-TGC-A-ATTTGG--NTA-A-GCCT--AAACGCGAAG-TTTG-AAATATTGTT---ATA-TAACG-TCAAA-A-AATATATAA-GATTT--ACTTTAAAACTG-GTGTCTGATTT-GTTTTTATT-TC-TA-CA-GAAACT-AGGTAT-ATC--CTA-AGCGG--AATAAACCATA-CA-GACATAC---CG--ATTT-CAAAAGTTTGGGACCGAA-TTGAA-TGTCCGA--CGG-ATC-GATCACG-TA--CAACGTTCGAATCGACCTG--CAGTCCGTTTCAAA-CGTCTT-TCCGTGA-TTCGGA-ACT------GG-C-AGCGTGATTC--------------GNAAC-TGACCN-AT-TGAAC-TCGGTT-ATGGAAAAATG-C-A--AAGACC----GGTNATAT-TTACAACGAT-TTTC--NG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-C-ACAAGAAGATTGGAAACC---T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAAT-TGAAAA-TGTG-ATCCGGA-ACTGG-GCCN-AAGACTGTA
Reference ( gi|2 ) : TTCTGAAATTTGTTG------TACA----G-T-C-G---TTTGC-CCAGTT--CCG--GATCATGATCAT-GGCCAGTTCCGAATC-ACTT-----TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATTAC--AA---CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTCAAA-CTT-TT---ATATAAGA--CATGAACGA-CTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CA-T-GCGCTGGATTGGAAA--ACGTGCATGTCACT----AATGT-ATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-AATAAAATAAT-TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAAGAAACGCTACCT-------CATGGACCAATTCCGGATCAGTCGTTCGTGTCAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATA----TA----TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATT----ACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATACATTTATT--TA--AAAAA---TGGATAGAATA-AAAGTGGACAG----TAAA-TATACT--GAATA-TTGTACTTTTCGATT------TACTTTTT-C----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTA----A-----AAAGTTATTCTGATCGAGCTTCGAT-C-CACTC--TCG-C-AACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATA-ATAATG-ATATTAT-CATA-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAAT-AAG-ATAA-TTTTCACATGCTTGC-A-ATTTGA--ATA-A-GCCTAAAAACGCGAAGTTTTGCAAATATTGTTCCAATA-TACTG-TCAAG-A-AATATATAA-GATTT--ACTTTACAACTG-GTGTTTGATTTCGTTTTGATT-TC-TA-AA-GAAACT-AGGTAT-ATC--TGA-AGCAG--AATAAACCATA-CA-GATATAC---TG--ATTT-TAAAAGTTTGGGACTGGA-TTAAA-TGTTGGATTCGGTATC-AATCACGTTA--CAACGTTCGAATCGACCTG--CGGTTTGTTTCAA--CATCTCGTCCGTGA-TTCGGA-ACT-----CGG-C-AGTGTGATTC--------------G--AC-TGACCT-AT-TGAAC-TCGGTT-ATGGAAAAATG-C-A--AAAATC----GGTGATAT-TTACAACAAT-TTTC--CG---AT-ATAGTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTAC-ACAAGAAAATGGGAAACC---T-AA---A-T-ATCT-------------TCT-T--------GGA-TTAC-A-CCGTCAGC-AATC-GT-------TAAT-TAAAAA-TGTG-ATCCGGA-ACTGGCACCT-AAGACTGTA
gi|8 : TCTGAAAATCGTTA------TACATATAA-T-C-GGTCTTTGC----GTTTTCCATTAACCAAGCTCATCGGTCAGTTTCGAATC-AC
gi|9 : tttttttttttacaaatcgctcggactaaatgaaactaggcatatcggaataatatagcacatatattgtgatttcaagtttggaaccgattgaatgtcagtcaacgttcaaatctgcagtcttttcaaatgactccgtgattcgcaactggtggcagcagtTGAGAGTTACAG------TACA----G-T-C-G---TTTGC-CTAGTT--CCG--GATCATG-------GCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-TACAAAA---CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTCAAA-CTT-TT---ATATAA-A--CAT-AACGA-CTT-CGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CA-TCGCGCTGGA-TGGAAA--ACGTGCATGTCACT----AATGT-ATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTtgatttcatttctttttcattagaataacttctgatctcataagaagattggtcctaaattatctttgtggatacccccagcgatcattaataaaaatgtgcttcggaactgtgccaaacacggtgta
gi|12 : aATTCGTTGATAATATACA----G-T-C-A---TTTGC-CCAGTT--CCG--GATCATGA-------CCAGTTCCAAATC-ACTTCACTTTGTA-ATT--ATCAGTT--AAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACTGAA-GGA-CAC--A-----------AAT----ATCCATCCCCGGTTTATTACTTGCTACA-CCT-CT---
gi|17 : tgtacTTATTGGC----TGCA----G-TTC-A---TTTGC-CCAGTT---------TCA-GATCAT-GGCCAGATCCGAATC-ACTT-----TGTA-ATT--TTTATTTCTAAAATATACcatttacgcgcttgaggaaaattcacgctggggaaa
gi|3 : tga------TACA----G-T-C-T---TTAGG-CCAGTT--CCG--GATCA
gi|14 : atctcattaatagatattccagcaatatactaaatattttcccatggatgtattattgcagataagataccttacgaaagaaacgtcacctcatggtccaattccggatcaaccatgtaaaatttctgtcattcgtgtcatgttgaacttggttttaaattttgagcaatatttcagttcataataaaaggttctctttgatttataaaagtagggtcaaatatgaaaaacacacttttttgtatgaataaacactatggttttctcaagattattaacaccccctccccgcggtaaaatacattttaagaaaaatgttaatataaagtggacagtaaatgtactaagtattgcatttcgatttacatgtacttcttggtattaatattttaaagatacactgtaattatatttactgtgtagcctttgttggtttttatcctatttttcaagttattccgagcaccacaccctcaccaacaccatacgaaacgacgaggaattgttacactgtgtagatataatattatatcataaaaagactcaaaaaaaaaataattttaaaggagaattttgaatgccgcaaatttggttacgcctaaacgcgaagtttgaaatattgttcaatataacgttcaatataacatgtcgactatactgatgtctaacttgtttttatttttacaaaaacaagatatcttctaagcgggcaaaaaaccatatagacataccaatttaaagtttggggccgactgaatgtcgaatcggatcactatgtacaacgttcgaaacgacctgcagttgttttaaacatctccgtgattcggaagtggcagtgtaatttggaacttacctatcaacttgtttatggaaagagccaatgatcggtgatatttactacaattttcagataaatcaatttatttttcattagagtaacttctgatcttcctacaagaagattaaaacctaaaatgtcncacgccacctatgttttagtaaaggggaaaaccgacaaatatcgaccattaaaatg------TACA----G-T-C-T---TCGGC-CCAGTT--CTG--GATCA
gi|13 : gcagtgtgatttaaattaattggactgactgacctatgtatttgattatggaaaatgcaaagacagatgatttgatataatttagtctaacttctgatcttctcacaagaagattgaaacataaattattttttgtggatttttaccgccagcaatcgtgtgtgaaaatg------TACA----A-T-C-G---TTTGCGCCAGTT--CCG--GATCA-----AT-GGCCAGTTCCGAATC-ACTT-----TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|1 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaaagagccattgaaaACA----GCT-CTG---TTTGC-CC-GTT--C--------GTGATCAT-G--CAGTTCCGAATCGACTTG----TGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGATTAC--AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTCAAA-CTTCTT---ATATGATATACATGAACGA-CTT-CGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACA-TCGCGCTGTAT---ATATTATCTGTTTGTCTCTCTTGAAAGT-AT--ATATCACGATTATTTGCACTAAATCAT-TATT-GCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAA-TAAGATATTT-CTTCAACATGGGATGTATTAT---TGCAGTCA-GATGGCTTACGAAATGAAACGCTACCT-------CATGGTCCAATTCCGGATCAGTCGT--GT-CCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGTGATAA---CAAAGAAC-TA-TCCGTTTTCTCAAGGATT----ACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAATTATTTGTA--AAAAAAATTCGATAGAGGA-TAAGTGGACAGTTATTAAATTATAGTACAAATAGTTGTA--TTTTGATT------ATCTTCTTGC----GTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGTG----T-----AAGGGTATTCCGA-CGAGCTTCGATCC-CACTCGGTCGTC-AACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T--ATAATGTATA-TATCCATACAGCAG-CT-CAGAGAAAATGAATTATCAATGTTAAAAT-AAGTATAATTTTTTAAATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TTGAATATATTGTTC--ATATTAC-G-TCAAA-G-AATATA-AA-GA-TT--AC-TTAC-ACTG-GTTGTCGATTTCGTTTTGATTGTCGTATCA-GAAACTGAGGTATGATCT-TGAGAGCGA--GATATA-CATA-CAGGATAT-CTGGTG--ATTTCCAAAGGTTCGGGACTGAG-TTGAATTGGTCGATGGGGGGGCGGATCA--TTATCTAACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAACCAT----TCCGTGATTTCGGA-ACT-----GTG-C-AGTGTGAGTCTG------------A--AC-TGACCA-AA-TGAACTTCGGTTAATGG-AAAATG-CTAGTAACATC----GGTGATAT-TTAC-ACAATGTTTC--C----AT-ATA-TCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCTTCACTATAAGAAAGAGTGAAA-C---T-AGATTA-T-ATCT-------------GTC-T--------GAATTTAC-ATCCGTCAGCAAATCGGT-------TAAC-TAAAAATTGTGAATCCGGA-ATCGG-GCCT-AA
gi|11 : tgCG----G-T-C-A---TGTGT-C-AGTT--GCG--AATCACG-CC----GCCAGTTCCGAATC-ACTacgac
gi|3 : ctcgaattgccttgcacccgtttcaaacgtcttAGTT--CCA--AATTA----CAC-TGCCACTTCCGAATC-AC-------GGAG-AT-------GTT-TAAAA-cggttgtgtaaaatgtcaagaacgatcatgtttacaatgattttcagctaatatgatatatttttaattagagtagcttctggtcttctcacgagaagactgaaacccgttttttcttcgtggattataccgtgggcaatcgtagatgaaaatgtgatcggatactgggcgaaagactgt
gi|4 : atctcattaatagatattccagcaatatactaaatattttcccatggatgtattattgcagataagataccttacgaaagaaacgtcacctcatggtccaattccggatcaaccatgtaaaatttctgtcattcgtgtcatgttgaacttggttttaaattttgagcaatatttcagttcataataaaaggttctctttgatttataaaagtagggtcaaatatgaaaaacacacttttttgtatgaataaacactatggttttctcaagattattaacaccccctccccgcggtaaaatacattttaagaaaaatgttaatataaagtggacagtaaatgtactaagtattgcatttcgatttacatgtacttcttggtattaatattttaaagatacactgtaattatatttactgtgtagcctttgttggtttttatcctatttttcaagttattccgagcaccacaccctcaccaacaccatacgaaacgacgaggaattgttacactgtgtagatataatattatatcataaaaagactcaaaaaaaaaataattttaaaggagaattttgaatgccgcaaatttggttacgcctaaacgcgaagtttgaaatattgttcaatataacgttcaatataacatgtcgactatactgatgtctaacttgtttttatttttacaaaaacaagatatcttctaagcgggcaaaaaaccatatagacataccaatttaaagtttggggccgactgaatgtcgaatcggatcactatgtacaacgttcgaaacgacctgcagttgAA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGATAAC--AAA--CTGTTGTAAT--ACATACCTCCC-GGTTTATTACTT-TCAAAACTT-TTTTAATATAA-A--CAT-AACGAACTT-TGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CA-T-CATCTGGG--GGAAA--ATG---ATGTCA-T----AAAGTTATAGAT----C-AT-ATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-AATAAAA------ATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGCAAAGAGtacctatcaacttgtttatggaaagagccaatgatcggtgatatttactacaattttcagataaatcaatttatttttcattagagtaacttctgatcttcctacaagaagattaaaacctaaaatgtcncacgccacctatgttttagtaaaggggaaaaccgacaaatatcgaccattaaaatgtgatccggaactggcctaaagactgta
gi|15 : tgccAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-TAC--AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTCAAA-CTT-------TATAA-A--CAT-AACGA-CTT-CCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATT-GCGCTGGA-TGGAAA--Actatgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|19 : ATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-TAC--AA---
gi|12 : cA-CTTGCTAC-----ACCTC---TC-AT-TTA-CGCGCTTGAGGAAAA-TT-C-ACGCTGG---GGAAA--
gi|3 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-ACTAAA------TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACGAAA-GAAACGTCACCT-------CATGGTCCAATTCCGGATCAACCAT----GTAAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACA----C-----TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTATTAACACCCCCTCCC-----------CGCGGTAAAATACAT---TT--TAAGAAAAA---TG--T-TAATATAAAGTGGACAG----TAAA-TGTACT--AAGTA-TTGCA--TTTCGATTTACATGTACTTCTT-G----GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTTATCCTATTTTTCAAGTTATTC----CGAGC----AC-CACACCC--TCACC-AACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT--ATAATA-TTA-TAT-CATA-AAAAGACT-CAAAAAAAA--AAT----AATTTTAA----AGG-AGAA-TTTTGA-ATGC-CGCAA-ATTTGG--TTA-C-GCCT--AAACGCGAAG-TTTG-AAATATTGTT-CAATA-TAACGTTCA--------ATATAA-CATGTCGACTAT---ACTG-ATGTCTAACTT-GTTTTTATT-TT-TA-CA-AAAACA-AGATAT-CTT--CTA-AGCGGGCAAAAAACCATA-TA-GACATAC---CA--ATTT---AAAGTTTGGGGCC-GA-CTGAA-TGTCGAA-TCGG-ATC-ACT-ATG-TA--CAACGTTCGAAACGACCTG--CAGTTGTTTTAAA--CATC---TCCGTGA-TTCGGA-AGT------GG-C-AGTGTAATTT--------------GGAAC-TTACCT-AT-C-AAC-TTGTTT-ATGGAAAGAGC-C-A--ATGATC----GGTGATAT-TTACTACAAT-TTTC--AG---AT-A-AATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT---ACAAGAAGAT-TAAAACC---TAAA---A-T-GTCNCACGCCACCTATGTTT-TAGTAAAGGGGA---AA-A-CCGACAAA-TATC-GA-------CCAT-T-AAAA-TGTG-ATCCGGA-ACTGG--CCTAAAGACTGTA
gi|6 : -TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACCAAA-GAAA---TACCTTCTGCTGCTTGGG----TTCCGGAACAGTCGT----GTCAA-CTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTTAAAAT
gi|4 : GCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATT----TG----TTTTTGTTTTGGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|20 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtata--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|16 : gCAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-A----TG----TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATT----ATGACCCCCCCCCCCCCttcgtattaa
gi|10 : cGATTTAT---AGAAG--TGTGAAATAT-GATAAACATA----CA----TTTTTTGTTTGGT-AT-GAACCAA-G-AC-TA-T-CGTTTTCTCAA-GATT----AC-----------CCCTCCCCCTCGCGGTGAAATACATTTTTT--TT--TAAAT---T--ATAAGATA-GA-GTGGACAG----TAAA-TATACT--AAGTA-TTGTA--TTTCGATT------TACTTCTT-GAATGGTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAATTTA-----AAGGTTATTCCGATCGAGCTTCGATCC-CACCC--TCG-C-AACACCATACGAAAACGGCGAGGAA-T
gi|6 : AAA-TATAC---GA-----TGTA--TCTAGATT------TACTTCTT-G----AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTAT
gi|5 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaag-CACCC--TGG-CCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AATATATAATA-A-ATTGT-CA------ACATTC---AGATAATGA-----------TAACATTAGG-AGAA-TTTTGACA-GCCT-C-A-ATTTTG--GCA-ATGCCTGAA--TGTGAAGTTTTG--AATGTTGT------------G-TAAAACA-AAT---TAA--------ATGTCAAAA----GTGTTTGAATT--TTTCTACT-TC-AA-CA-GAAAAA-ATGTTT-ATCATTCA-AG--G--GATATAC-ATA-CT-GACA-AA---TG--AC-----AAATTTTGGTAC-GAA-TTA---TGTCGGA--CGACA-------ACG------AAGGCTCGAAATGCCTTG--CA-CCCGTT-CAA--CGTCTTA---GTGA-TTCGGACACT-----TGGGCGAGCGTGATTC--------------GCAACATGACAC-AT--GACC-GCGGTT-CGTGTAAAATGTC-A--AGAA-C----GATCATTTGTTACAATGAT-TTTCACTA---AT-ATA------T-TATTT---AATAGAGTAAGCTTCTGgatt
gi|7 : ATA-TAACG--CAAA-ACAAT-TGTAAAGATTA--ATTCAAAAAGTACGTGTCTGATTT-GTTTTTATT-TC-TT-CA-GAAGCT-AGGTAT-TTC--CTA-AGCGA--AATAAA---------GA------------ATT-------GTTTG--ATTGAAGTT----TGTTCGAA-CAG-ATC-AA-CACCATA--TATTGT--GAATAGACCCA--CAGTC-GTTTCAAA-CGTCTTTT---TGA-TTGGGA-ACT------GG-C-AGTGCTAATC--------------GGAAC-TGATTTTATATAAAC-ACGATC-ACGGAAAA-TA-C-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTGC--TG---AT-A-AATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TCCTCT-TAC------AAAAT--GAAACC---T-AA---ATT-ATCT-------------TTG-T--------AGA-TTAT-A-CCACTAGC-AATC-ACTTGCATGTAAT-T-AATA-TGTG-ATCTGGA-ACTGGgtcttgc
gi|8 : C-TA-AATGAAACT-AGGCAT-ATC---------GG--AATAA--TATAGCA-CATATAT---TGTGATTT-CAA--GTTTGGAACCG-A-TTGAA-TGT------CAGT----------------CAACGTTCAAATC----TG--CAGTCT-TTTCAA---ATGAC-TCCGTGA-TTCGCA-ACTGGTGGCAG-C-AGTGTGATTC--------------GAAAC-TGACCG-A--TGAGC-TTGGTTAATGG-AAAACG-C-A--AAGACC----GATTATAT-GTATAACGAT-TTTC--AG---ATGAT-TTCATTT-C-TTTTTCATTAGAATAA-CTTCTGA-----TCT---C-ATAAGAAGATTGG--TCC---T-AA---ATT-ATCT-------------TTG-T--------GGA-T----A-CCCCCAGC-GATC-AT-------TAA--TAAAAA-TGTG-CTTCGGA-ACTGgctaaagccg
gi|11 : tttttttttttacaaatcgctcggaTCGAATTGCCTTG--CA-CCCGTTTCAAA-CGTCTTA---GTGA-TTCGGA-ACT------GG-C-GGCGTGATTC--------------GCAAC-TGACAC-AT--GACC-GCGGTT-GTGTAAAA-TGTC-A--AGAA-C----GATCATGT-TTACAATGAT-TTTC--AGCTAAT-ATGAT--AT---ATTTTTAATTAGAGTAG-CTTCTGG--TCTTCTC----ACGAGAAGACTGAAACCCGTTT--------T-TTCT-------------TCG-T--------GGA-TTAT-A-CCGTGGGC-AATC-G--------TAGA-TGAAAA-TGTG-AT-CGGATACTGG-GCGA-AAGACTGTtgccaaacacggtgta
gi|14 : cG-C-AGTGTGATTTAAATTAATTGGACTG--AC-TGACCT-AT--GTAT-TTGATT-ATGGAAAA-TG-C-A--AAGACA----GATGAT---------------TT----G---AT-ATA---------ATTT------AGTCTAA-CTTCTGA--TCTTCTC----ACAAGAAGATTG-AAACA---T-AA---A-TTATTT-------------TTTGT--------GGA-TTTTTA-CCGCCAGC-AATC-GT---------GTGTGAAAA-TGTG-ATCCAGA-ACTGG-GCCG-AAGACTGTA
gi|13 : TG-ATCCGGA-ACTGGCGCAA-ACGATTGTA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA
Alignments
lowQualScore : 333333 11111 22222 11 11 22 11 111111 222 1 22222 111 2222 1 111 11 1 1 1 11 1 2222 22222 2222222 111 111 1 11 111 2222 1 11 2222222 2222 111 111 3333333333 1111 111 111 111 11 111 1 1111 11 333333333333 1111 11 111 1111 11 222222 1111 1111 333333333 1 555555555555 2 11 1 222 11 1 1 1 1 222222 1 555555555555 1 11 1 1 111 11 111 11 11 1 1 11 333 11 1111 11111 2222222222222 1 2222 222 333333333333333333333333 111111 9999999999999999999999999999999 222222 11 111111 222222222222 111 1111 1111 11111111111 1111 111 1111111111111 33333333333333333333333333 2222222222 1 11
lowQualScore : 1 777777 6 6 6 6 2 44444 2 6 33333 0 5 77 5 44 5 5 888 0 0 33 5 5 55 5 5 5 5 55 3 1 6 555555 222 6 8 00000 8 6 6 66 1 6 1 111 3 0 2 1111 4 0 4 777 22 0 0 0 8 11 8 0 2 1111 55555 1111111 8 444 3 0 0 444 1 1 33 8 0 5 777 1111 0 3 22 1 99 99 99 1 6 8 3 3 1111111 999 8888 8 111 6 999 6 3 1 0000000000 2 2222 111 8 8 000 0 8 999 33 111 0 7777 11 000000000000 999 0 7777 8 8 11 444 8 7777 11 333333 7777 8 1 8 2222 8 8 222222222 0 0 333333333333 3 6 0 3 2 11 3 0 8 000 2 33 3 0 3 0 0 0 444444 0 0 0 333 3 777777777777 3 0 2 33 0 0 0 111 33 1 777 33 33 0 0 33 333 3 33 1111 44444 0000000000000 1 5 999 0 6 0 8 8888 6 6 5555 2 9999 111 999999999999999999999999 44 1 9999 1 111111 3333333333333333333333333333333 5 1 77 4 88 1 1 333333 5 5 33 5 444444 5 2 5 555555555555 5 66 666 55 555 6 9 1111 2 0000 5 1 5 3 0 5 0 77777777777 6 0 55 0 5 66 77 88 0000 5 111 1 9999999999999 5 99999999999999999999999999 77 5 5 0 5 8888888888 77 1 5 5 5 5 1 11
lowQualScore : . ...... . . . . . ..... . . ..... . . .. . .. . . ... . . .. . . .. . . . . .. . . . ...... ... . . ..... . . . .. . . . ... . . . .... . . . ... .. . . . . .. . . . .... ..... ....... . ... . . . ... . . .. . . . ... .... . . .. . .. .. .. . . . . . ....... ... .... . ... . ... . . . .......... . .... ... . . ... . . ... .. ... . .... .. ............ ... . .... . . .. ... . .... .. ...... .... . . . .... . . ......... . . ............ . . . . . .. . . . ... . .. . . . . . . ...... . . . ... . ............ . . . .. . . . ... .. . ... .. .. . . .. ... . .. .... ..... ............. . . ... . . . . .... . . .... . .... ... ........................ .. . .... . ...... ............................... . . .. . .. . . ...... . . .. . ...... . . . ............ . .. ... .. ... . . .... . .... . . . . . . . ........... . . .. . . .. .. .. .... . ... . ............. . .......................... .. . . . . .......... .. . . . . . . ..
lowQualScore : 0 000000 7 7 7 7 5 33333 5 7 33333 6 7 99 7 11 7 7 666 7 1 33 7 7 11 7 7 7 7 88 2 0 7 000000 000 0 0 00000 0 7 7 77 7 7 0 555 2 2 5 2222 0 0 2 000 55 0 0 0 0 00 0 0 5 2222 00000 0000000 0 000 8 8 8 000 4 0 00 0 8 0 555 2222 0 2 00 2 22 22 22 7 7 0 8 2 8888888 888 0000 0 777 7 777 7 5 7 0000000000 5 1111 888 0 0 000 8 0 666 88 000 0 0000 00 888888888888 888 8 0000 0 0 00 000 0 0000 00 000000 0000 0 8 0 6666 0 0 000000000 8 0 222222222222 2 5 0 2 5 00 2 8 0 000 0 88 2 0 2 0 0 0 555555 2 0 2 555 2 555555555555 2 0 5 88 2 0 0 000 88 0 000 88 22 0 0 22 000 2 66 2222 00000 4444444444444 0 0 222 8 0 6 0 4444 7 7 2222 5 3333 777 555555555555555555555555 77 0 3333 0 888888 3333333333333333333333333333333 4 3 99 3 00 4 7 111111 7 7 66 0 444444 0 0 9 666666666666 0 00 666 22 999 5 4 9999 2 6666 9 0 0 4 2 0 1 11111111111 5 1 22 8 0 99 00 77 1111 7 000 7 3333333333333 7 66666666666666666666666666 11 7 7 4 7 4444444444 44 1 7 7 7 7 0 00
consensus : NTCTGAGANTCGTTGA-A---TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTTCGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-A-TTT-TTT----AAA--AAAT---AT-ANA---ATA-GAAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCT----TG-GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAATAGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTT-G-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--ACTT-AAAACTG-G-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--A-ATAAA-CATACAG-ACATAC----C----GATTT-CAAAAGTTTGGGACCGAATTGAA---T--GTC--------GA--CGG-ATCGACCAC-G-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTCGGA------------AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCCAAAGAC--TGTA
Reference ( family-2613 ) : NTCTGAGANTCGTTG------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTTCGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AAAG-TATAGA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAGGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGCAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCC-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-A-TTT-TTT----AAA--AAAT---AT-ANA---ATA-NAAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCT----TG-GTATTAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGA-CGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATA-ATA-TAT-CAT-A-AG-AGACT-CAGAGAAAATGAAT----AAT-TT-AAATAGG-AGAA--TTTTGA-ATGC-TGC-A-ATTT--GGNTA-A-GCCT--AAACGCGAAG-TTT-G-AA-ATATTGTT---ATATAACG-TCAAAA-AAT-ATATAAGATTT--ACTTTAAAACTG-G-TGTCTGATTT-GTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--A-ATAAACCATACAG-ACATAC----C----GATTT-CAAAAGTTTGGGACCGAATTGAA---T--GTC-------CGA--CGG-ATCGATCAC-G-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGCGTGATTCGNA------------AC-TGACCN-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTGAAAA-TGTG-ATCCGGA-ACTGG-GCCNAAGAC--TGTA
gi|1 : ACAGCT-CTGTTTGC-CC-GTTC------GTGATCATG--CAGTTCCGAATCGACTTG----TGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGA-TTA-C-AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTC-AAACTTCTT---ATATGATATACATGAACG-ACTTCGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACATCGCGCTGTA-TATATTATCTGTTTGTCTCTCTTGAAAG-TATATA--TCACGATTATTTGCACTAAATCAT-TA-TTGCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAATAAGA-----TATTT-CTTCAACATGGGATGTATTAT---TGCAGTC-AGATGGCTTACG-AAATGAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGTCCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGT-G-ATAA-CAAAGAAC-TA-TCCGTTTTCTCAAGGATTACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAA-TTA-TTTGTAAAAA--AAATTCGAT-AGA---GGA-TAAGTGGACAGTTATTAAATTAT-AGTACAAA---TAGT----TGTA--TTTTGATT------ATCTTCT----TGCGTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGT-G---TA-----AGGG-TATTCCGA-CGAGCTTCGATCCCACTCGGTCGTCAACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T-ATAATGTATA-TATCCAT-ACAG-CAGCT-CAGAGAAAATGAATTATCAATGTTAAAATAAGTATAATTTTTTAA-ATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TT-G-AATATATTGTTC--ATATTACG-TCAAAG-AAT-ATA-AAGA-TT--ACTT--ACACTG-GTTGTC-GATTTCGTTTTGATTGTCGTATCAGAAACTGAGGTATGATCTTGAGAGCGA--G-ATATA-CATACAG-G-ATAT----CTGGTGATTTCCAAAGGTTCGGGACTGAGTTGAA---TTGGTCGATGGGGGGG--CGG-ATC-ATTA----TCTAACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAAC--CAT-TCCGTGATTTCGGA-ACT--GTG------C-AGTGTGAGTCTGA------------AC-TGACCA-AA-TGAACTTCGGTTAA-TGG-AAAATGCTAGTAACATC----GGTGATAT-TTAC-ACAATGTTTCC----AT-AT-ATCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCT-T-CACTATAAGAAAGAGTGAAA--C----T-AGATTA-T-ATCT-------------GTC-T--------GAATTTAC-ATCCGTCAGCAAATCGGT-------TAACTAAAAATTGTGAATCCGGA-ATCGG-GCCTAA
gi|10 : tgGATTTAT---AGAAG--TGTGAAATAT-GATAAACATACA--------TTTTTTGTTTGGT-AT-GAA-CCAAG-AC-TA-T-CGTTTTCTCAA-GATTAC---------CCCTCCCCCT--CGCGGTGAAATAC-ATTTT-TTT----TTA--AATT---AT-AAG---ATA-G-AGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTGAATG-GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAA-TTTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCG-CAACACCATACGAAAACGGCGAGGAA-Tacgac
gi|11 : TCGAATTGCCTTG--CA-CCCGTTTCAAACGTCTT---AGTGA-TTCGGA-ACT--G-G------C-GGCGTGATTCGCA------------AC-TGACAC-A--TGACC-GCGGTT-G-TGT-AAAATGT-C--AAGAAC----GATCATGT-TTACAATGAT-TTTCAGCTAAT-ATGAT-A----TATTTTTAATTAGAGTAG-CTTCTGG--TCT--TCT-CAC---GAG-AAGACT-GAAACCCGTTT--------T-TTCT-------------TCG-T--------GGA-TTAT-A-CCGTGGGC-AATC-G--------TAGATGAAAA-TGTG-AT-CGGATACTGG-GCGAAAGAC--TGT
gi|12 : cATTCGTTGATAATATACAG-T-C-ATTTGC-CCAGTTCCGGATCATGA------CCAGTTCCAAATC-ACTTCACTTTGTA-ATT--ATCAGTT--AAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACT-GAAGGA-C-A-C-AAA---------------TATCCATCCCCGGTTTATTACTTGCT-ACACCT-CT---
gi|12 : tgtacTC-AT-TTA-CGCGCTTGAGGAAAA-T-TCACGCTGG---GGAAAcatttacgcgcttgaggaaaattcacgctggggaaa
gi|13 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattacttgctacacctcAGAGCCATTGAAA---TACAA-T-C-GTTTGCGCCAGTTCCGGATCA-----ATGGCCAGTTCCGAATC-ACTT-----TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|14 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaa-G------C-AGTGTGATTTAAATTAATTGGACTGAC-TGACCT-AT--GTAT-TTGATT-A-TGGAAAA-TGC-A--AAGACA----GAT-------------GAT-TT---G---AT-ATAAT---------------TTAGTCTAA-CTTCTGA--TCTTCTC---AC---AAG-AAGATTG-AAACA----T-AA---A-TTATTT-------------TTTGT--------GGA-TTTTTA-CCGCCAGC-AATC-GTG------TG--TGAAAA-TGTG-ATCCAGA-ACTGG-GCCGAAGAC--TGTA
gi|15 : AATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-C-AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTC-AAACTT-------TATAA---ACAT-AACG-ACTTCCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATTGCGCTGGA-TGGAAAA
gi|16 : CAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-ATG--------TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATTATGACCCCCCCCCCCCC
gi|17 : c------TGCAG-TTC-ATTTGC-CCAGTT-----TCA-GATCATGGCCAGATCCGAATC-ACTT-----TGTA-ATT--TTTATTTCTAAAATATAC
gi|19 : tgattattggcATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-T-A-C-AA
gi|2 : cTCTGAAATTTGTTG------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATT-A-C--AA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAAG--ACATGAACG-ACTTCGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CAT-GCGCTGGATTGGAAAACGTGCATGTCACT----AATG-TATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-AATAATTATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAA-GAAACGCTACCTCATGGACC---AATTCCGGATCAGTCGTTCGTGT-CAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATATA--------TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATTACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATAC-A-TTTATTT----AAA--AAATGG-AT-AGA---ATA-AAAGTGGACAG----TAAA-TAT-ACT--GAA---TA-T----TGTACTTTTCGATT------TACTTTT----TC-GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A----A-----AAAGTTATTCTGATCGAGCTTCGAT-CCACTC--TCG-CAACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATAATAATG-ATATTAT-CAT-A-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAATAAG-ATAA--TTTTCACATGCTTGC-A-ATTT--GAATA-A-GCCTAAAAACGCGAAGTTTT-GCAA-ATATTGTTCCAATATACTG-TCAAGA-AAT-ATATAAGATTT--ACTTTACAACTG-G-TGTTTGATTTCGTTTTGATT-TC-TA-AAGAAACT-AGGTAT-ATCTG--AAGCAG--A-ATAAACCATACAG-ATATAC----T----GATTT-TAAAAGTTTGGGACTGGATTAAA---T--GTT-------GGATTCGGTATCAATCAC-GTTACAACGTTCGAATCGACCTG--CGGTTTGTTTC-AACATCTCGTCCGTGA-TTCGGA-ACTC-G-G------C-AGTGTGATTCG--------------AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAAATC----GGTGATAT-TTACAACAAT-TTTCCG---AT-ATAGTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTACAC---AAG-AAAATGGGAAACC----T-AA---A-T-ATCT-------------TCT-T--------GGA-TTAC-A-CCGTCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGGCACCTAAGAC--TGTA
gi|20 : t--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|3 : gATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-----ACTAA-A-----TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACG-AAA-GAAACGTCACCTCATGGTCC---AATTCCGGATCAA----CCATGT-AAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACAC---------TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTA-----TTAACACCCCCTCCC--CGCGGTAAAATAC-A-TTT-TAA----GAA--AAAT---GT--TA---ATATAAAGTGGACAG----TAAA-TGT-ACT--AAG---TA-T----TGCA--TTTCGATTTACATGTACTTCT----TG-GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTT-ATCCTATTTTTCAAGTTATTC----CGAGC----ACCACACCC--TCACCAACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT-ATAATA-TTA-TAT-CATAA-AA-AGACT-CAAAAAAAA--AAT----AAT-TT-TAA-AGG-AGAA--TTTTGA-ATGC-CGCAA-ATTT--GGTTA-C-GCCT--AAACGCGAAG-TTT-G-AA-ATATTGTTCA-ATATAACGTTCA--------ATATAACATGTCGACT---ATACTG-A-TGTCTAACTT-GTTTTTATT-TT-TA-CAAAAACA-AGATAT-CTTCT--AAGCGGGCA-AAAAACCATATAG-ACATAC----C----AATTT---AAAGTTTGGGGCCG-ACTGAA---T--GT--------CGAATCGG-ATC-ACTAT-G-TACAACGTTCGAAACGACCTG--CAGT-TGTTTTAAACATC---TCCGTGA-TTCGGA-AGT--G-G------C-AGTGTAATTTGGA------------AC-TTACCT-AT-C-AAC-TTGTTT-A-TGGAAAGAGCC-A--ATGATC----GGTGATAT-TTACTACAAT-TTTCAG---AT-A-AATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT--AC---AAG-AAGATT-AAAACC----TAAA---A-T-GTCNCACGCCACCTATGTTT-TAGTAAAGGGGA---AA-A-CCGACAAA-TATC-GA-------CCATT-AAAA-TGTG-ATCCGGA-ACTGG-CCTAAAGAC--TGTAttcgtattaa
gi|4 : AA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGA-T-AAC-AAA--CTGTTGTAA--TACATACCT-CCCGGTTTATTACTT-TCAAAACTT-TTTTAATATAA---ACAT-AACGAACTTTGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CATCAT-CTGGG--GGAAAATG---ATGTCA-T----AAAGTTATAGA--TCA----TATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-----AATAA-A-----AATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGC--AAA-GA---GCTA
gi|4 : tgccGCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATTTG--------TTTTTGTTTTGGT-tgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|5 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtataCACCC--TGGCCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AAT-ATA-TA-ATA-AAT-TGT-C-A--ACATT-CAGATAA--TGA-T----AAC-AT----TAGG-AGAA--TTTTGA-CAGC-CTC-A-ATTT--TGGCA-ATGCCT--GAATGTGAAG-TTTTG-AA-----TGTT---GTGTAA-----AACA-AAT----TAA-------ATGTCAAAA----G-TGTTTGAATT--TTTCTACT-TC-AA-CAGAAAAA-ATGTTT-ATCATTCAAG-GG--ATATA---CATACTG-ACA-AA----T----GAC-----AAATTTTGGTAC-GAATT--A---T--GTC-------------GG-A-CGACAAC-G----AAGGCTCGAAATGCCTTG--CA-CCCGTTC--AACGTCTT---AGTGA-TTCGGACACTTGG-G------CGAGCGTGATTCGCA------------ACATGACAC-A--TGACC-GCGGTT-C-GTGTAAAATGT-C--AAGAAC----GATCATTTGTTACAATGAT-TTTC-----------ACTAATA-TATTATTTAATAGAGTAAGCTTCTGG--TCTT
gi|6 : -----TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACC-AAA-GAAA---TACCTTCTGCTGCTTGGGTTCCGGAACAG----TCGTGT-C-AACTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTT-AAAgc
gi|6 : TT----AAAGGAAAT---ATTGTATTTACA-GAAGTAG-TGT----TAGA-TATGATT--AAGAAATA-TACGATGTA--TCTAGATT------TACTTCT----TG-AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTATatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|7 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgta---ATATAACG--CAAAACAATTGTA-AAGATTA--ATTCAAAAAGTACG-TGTCTGATTT-GTTTTTATT-TC-TT-CAGAAGCT-AGGTAT-TTCCT--AAGCGA--A-ATAAA-------G-A---------------ATT-------GTTTG-------ATTGAAGTTT--GTT-------CGAA-CAG-ATCAA-CACCA-TATATTGT--GAATAGACCCA--CAGTC-GTTTCAAACGTCTT-TT--TGA-TTGGGA-ACT--G-G------C-AGTGCTAATCGGA------------AC-TGATTTTATATAAAC-ACGATC-A-CGGAAAA-TAC-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTGCTG---AT-A-AATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TC--CTCT-TAC-------AAAAT--GAAACC----T-AA---ATT-ATCT-------------TTG-T--------AGA-TTAT-A-CCACTAGC-AATC-ACTTGCATGTAATT-AATA-TGTG-ATCTGGA-ACTGG-GCTAAAGgatt
gi|8 : GAAACT-AGGCAT-ATC--------GG--A-ATAA----TATAGCACATATATTGT----GATTT-CAA--GTTTGGAACCGA-TTGAA---T--GTC-----------------------A--G-T-CAACGTTCAAATC----TG--CAGTCT-TTTCAAATGACT---CCGTGA-TTCGCA-ACT--G-GTGGCAGC-AGTGTGATTCGAA------------AC-TGACCG-AT--GAGC-TTGGTT-AATGGAAAA-CGC-A--AAGACC----GATTATAT-GTATAACGAT-TTTCAG---ATGAT--TTCATT-TCTTTTTCATTAGAATAA-CTTCTGA-------TCT-CAT---AAG-AAGATTGG--TCC----T-AA---ATT-ATCT-------------TTG-T--------GG----AT-A-CCCCCAGC-GATC-AT-------TAA-TAAAAA-TGTG-CTTCGGA-ACTGT-GCCAAACACGGTGTAccg
gi|9 : tttttttttttacaaatcgctcggactaaatTGAGAGTTACAG------TACAG-T-C-GTTTGC-CTAGTTCCGGATCATG------GCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-CAAAA--CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTTCGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AATG-TATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA
Alignments
lowQualScore : 111 44444444 11111 22222 11 11 22 11 111111 222 2 11111 111 2222 1 111 11 1 1 1 11 1 2222 22222 2222222 111 111 1 11 111 2222 1 1 2222222 2222 111 111 3333333333 1111 111 111 111 11 1 111 11 333333333333333333333 1111 11 111 1111 11 222222 2222 1111 333333333 1 555555555555 11 1 222 11 1 1 1 1 222222 1 111111111 1111 1 11 1 1 111 11 111 11 11 1 1 11 11 1111 11111 33333333333333333333 2 2222 11 333333333333333333333333 111111 77777777777777777777777777777 222222 11 111111 222222222222222 111 1111 1111 11111111111 1111 111 1111111111111 33333333333333333333333333 2222222222
lowQualScore : 111 00000000 6 6 6 6 2 44444 2 6 33333 0 5 77 5 44 5 5 888 0 0 33 5 5 55 5 5 5 5 55 3 1 6 555555 222 0 6 6 66666 6 6 6 66 1 6 1 111 3 0 2 1111 1 0 1 777 22 0 0 0 8 11 8 0 2 1111 55555 1111111 8 444 3 0 0 444 1 1 33 8 0 5 777 1111 0 3 0 1 99 99 99 1 6 8 3 3 1111111 999 8888 8 111 6 999 6 3 1 0000000000 2 2222 111 8 8 000 0 8 999 33 0 111 8 11 333333333333333333333 0 0 7777 8 8 11 444 8 7777 11 333333 5555 1 8 2222 8 8 222222222 0 0 333333333333 3 6 9 3 2 11 3 0 8 000 2 33 3 0 3 0 0 0 2 444444 0 0 6 888888888 3333 0 1 33 0 0 0 111 33 1 777 33 33 0 0 3 99 3 33 1111 44444 5 11 77777777777777777777 0 0 0 8 8888 6 6 5555 2 99 55 999999999999999999999999 44 1 2 77 1 111111 88888888888888888888888888888 5 1 77 4 88 1 1 333333 5 5 33 5 444444 5 000000000000000 5 66 666 55 555 6 9 1111 2 0000 5 1 5 3 0 5 0 77777777777 6 0 55 0 5 66 77 88 0000 5 111 1 9999999999999 5 99999999999999999999999999 77 5 5 0 5 8888888888 77 9 5 5 5 5 5 5 99
lowQualScore : ... ........ . . . . . ..... . . ..... . . .. . .. . . ... . . .. . . .. . . . . .. . . . ...... ... . . . ..... . . . .. . . . ... . . . .... . . . ... .. . . . . .. . . . .... ..... ....... . ... . . . ... . . .. . . . ... .... . . . . .. .. .. . . . . . ....... ... .... . ... . ... . . . .......... . .... ... . . ... . . ... .. . ... . .. ..................... . . .... . . .. ... . .... .. ...... .... . . .... . . ......... . . ............ . . . . . .. . . . ... . .. . . . . . . . ...... . . . ......... .... . . .. . . . ... .. . ... .. .. . . . .. . .. .... ..... . .. .................... . . . . .... . . .... . .. .. ........................ .. . . .. . ...... ............................. . . .. . .. . . ...... . . .. . ...... . ............... . .. ... .. ... . . .... . .... . . . . . . . ........... . . .. . . .. .. .. .... . ... . ............. . .......................... .. . . . . .......... .. . . . . . . . ..
lowQualScore : 888 44444444 7 7 7 7 5 33333 5 7 33333 6 7 99 7 11 7 7 666 7 1 33 7 7 11 7 7 7 7 88 2 0 7 000000 000 0 7 7 77777 7 7 7 77 7 7 0 555 2 2 5 2222 0 0 2 000 55 0 0 0 0 00 0 0 5 2222 00000 0000000 0 000 8 8 8 000 4 0 00 0 8 0 555 2222 0 2 0 2 22 22 22 7 7 0 8 2 8888888 888 0000 0 777 7 777 7 5 7 0000000000 5 1111 888 0 0 000 8 0 666 88 0 000 0 00 444444444444444444444 8 8 0000 0 0 00 000 0 0000 00 000000 0000 4 0 6666 0 0 000000000 8 0 222222222222 2 5 2 2 5 00 2 8 0 000 0 88 2 0 2 0 0 0 0 555555 2 0 5 222222222 2222 0 0 88 2 0 0 000 88 2 000 88 22 0 0 2 00 2 66 2222 00000 0 44 88888888888888888888 8 0 6 0 4444 7 7 2222 5 22 88 555555555555555555555555 77 0 5 33 0 888888 55555555555555555555555555555 4 3 99 3 00 4 7 111111 7 7 66 0 444444 0 444444444444444 0 00 666 22 999 5 4 9999 2 6666 9 0 0 4 2 0 1 11111111111 5 1 22 8 0 99 00 77 1111 7 000 7 3333333333333 7 66666666666666666666666666 11 7 7 4 7 4444444444 44 3 7 7 7 7 7 7 22
consensus : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTT-CAAAAGTTTGGGACCGAATTGAA---T--GT-CGAA-------CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
Reference ( family-2613 ) : NTCTGAGANTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TTAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTT-CAAAAGTTTGGGACCGAATTGAA---T--GT-CGA--------CGG-ATCGACCACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
gi|1 : ACAGCT-CTGTTTGC-CC-GTTC------GTGATCATG--CAGTTCCGAATCGACTTG----TGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGA-TTA-C-AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTC-AAACTTCTT---ATATGATATACATGAACG-ACTT-CGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACATCGCGCTGTA-TATATTATCTGTTTGTCTCTCTTGAAAG-TATATA--TCACGATTATTTGCACTAAATCAT-TA-TTGCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAATAAGA-----TATTT-CTTCAACATGGGATGTATTAT---TGCAGTC-AGATGGCTTACG-AAATGAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGTCCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGT-G-ATAA-CAAAGAAC-TA-TCCGTTTTCTCAAGGATTACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAATTAT-TTGTAAA--AAAA--AT-TCG---ATA-GAGGATAAGTGGACAGTTATTAAATTAT-AGTACAAA---TAGT----TGTA--TTTTGATT------ATCTTCTTGC---GTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGT-G---TA-----AGGG-TATTCCGA-CGAGCTTCGATCCCACTCGGTCGTCAACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T-ATAATGTATA-TATCCAT-ACAG-CAGCT-CAGAGAAAATGAATTATCAATGTTAAAAT-AAGTATAATTTTTTAA-ATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TTG-AATATATTGTTC--ATATTACG-TCAAAG-AAT-ATA-AAGA-TT--AC-TT-ACA----CTGGTTGTC-GATTTCGTTTTGATTGTCGTATCAGAAACTGAGGTATGATCTTGAGAGCGA--GATATA-CATACAG-G-ATAT----CTGGTGATTTCCAAAGGTTCGGGACTGAGTTGAA---TTGGT-CGATGGGGGGGCGG-ATC-ATTA---TCTAACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAAC--CAT-TCCGTGATTTCGGA-ACT--GTG------C-AGTGTGAGTC---------TGA---AC-TGACCA-AA-TGAACTTCGGTTAA-TGG-AAAATGCTAGTAACATC----GGTGATAT-TTAC-ACAATGTTTCC----AT-AT-ATCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCT-T-CACTATAAGAAAGAGTGAAA--C----T-AGATTA-T-ATCT-------------GTC-T--------GAATTTAC-ATCCGTCAGCAAATCGGT-------TAACTAAAAATTGTGAATCCGGA-ATCGG-GCCTAAACGAC--
gi|10 : tgGATTTAT---AGAAG--TGTGAAATAT-GATAAACATACA--------TTTTTTGTTTGGT-AT-GAA-CCAAG-AC-TA-T-CGTTTTCTCAA-GATTAC---------CCCTCCCCCT--CGCGGTGAAATAC-ATT-T-TT-TTTT--AAATT-AT-AAG---ATA-G-----A-GTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTGAATGGTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAA-TTTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCG-CAACACCATACGAAAACGGCGAGGAA-T
gi|11 : TCGAATTGCCTTG--CA-CCCGTTTCAAACGTCTT---AGTGA-TTCGGA-ACT--G-G------C-GGCGTGATTC---------GCA---AC-TGACAC-A--TGACC-GCGGTT-G-TGT-AAAATGT-C--AAGAAC----GATCATGT-TTACAATGAT-TTTCAGCTAAT-ATGAT-A----TATTTTTAATTAGAGTAG-CTTCTGG--TCT--TCT-CAC---GAG-AAGACT-GAAACCCGTTT--------T-TTCT-------------TCG-T--------GGA-TTAT-A-CCGTGGGC-AATC-G--------TAGATGAAAA-TGTG-AT-CGGATACTGG-GCG-AAA-GAC--TGT
gi|12 : cATTCGTTG-ATAATA-TACAG-T-C-ATTTGC-CCAGTTCCGGATCATGA------CCAGTTCCAAATC-ACTTCACTTTGTA-ATT--ATCAGTT--AAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACT-GAAGGA-C-A-C-AAA---------------TATCCATCCCCGGTTTATTACTTGCT-ACACCT-CT---
gi|12 : tgtac-ACTTGCTAC-----ACCTC---TC-AT-TTA-CGCGCTTGAGGAAAA-T-TCACGCTGG---GGAAAcatttacgcgcttgaggaaaattcacgctggggaaa
gi|13 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattAGAGCCATTG-A----AATACAA-T-C-GTTTGCGCCAGTTCCGGATCA-----ATGGCCAGTTCCGAATC-ACTT-----TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|14 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaa-G------C-AGTGTGATTTAAATTAATTGGACTGAC-TGACCT-AT--GTAT-TTGATT-A-TGGAAAA-TGC-A--AAGACA----GAT-------------GAT-TT---G---AT-ATAAT---------------TTAGTCTAA-CTTCTGA--TCTTCTC---AC---AAG-AAGATTG-AAACA----T-AA---A-TTATTT-------------TTTGT--------GGA-TTTTTA-CCGCCAGC-AATC-GTG------TG--TGAAAA-TGTG-ATCCAGA-ACTGG-GCC-GAA-GAC--TGTA
gi|15 : AATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-C-AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTC-AAACTT-------TATAA---ACAT-AACG-ACTT-CCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATTGCGCTGGA-TGGAAAA
gi|16 : CAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-ATG--------TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATTATGACCCCCCCCCCCCC
gi|17 : cTTG-G----C-TGCAG-TTC-ATTTGC-CCAGTT-----TCA-GATCATGGCCAGATCCGAATC-ACTT-----TGTA-ATT--TTTATTTCTAAAATATAC
gi|19 : tgattaATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-T-A-C-AA
gi|2 : cTCTGAAATTTGTTG--------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATT-A-C--AA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAAG--ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CAT-GCGCTGGATTGGAAAACGTGCATGTCACT----AATG-TATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-AATAATTATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAA-GAAACGCTACCTCATGGACC---AATTCCGGATCAGTCGTTCGTGT-CAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATATA--------TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATTACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATAC-ATT-TATT-TAAA--AAATGGAT-AGA---ATA-A-----AAGTGGACAG----TAAA-TAT-ACT--GAA---TA-T----TGTACTTTTCGATT------TACTTTTTC----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A----A-----AAAGTTATTCTGATCGAGCTTCGAT-CCACTC--TCG-CAACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATAATAATG-ATATTAT-CAT-A-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAAT-AAG-ATAA--TTTTCACATGCTTGC-A-ATTT--GAATA-A-GCCTAAAAACGCGAAGTTTTGCAA-ATATTGTTCCAATATACTG-TCAAGA-AAT-ATATAAGATTT--ACTTTACAA----CTGG-TGTTTGATTTCGTTTTGATT-TC-TA-AAGAAACT-AGGTAT-ATCTG--AAGCAG--AATAAACCATACAG-ATATAC----T----GATTT-TAAAAGTTTGGGACTGGATTAAA---T--GT-TGGATT-----CGGTATCAATCACGTTACAACGTTCGAATCGACCTG--CGGTTTGTTTC-AACATCTCGTCCGTGA-TTCGGA-ACTC-G-G------C-AGTGTGATTC---------G-----AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAAATC----GGTGATAT-TTACAACAAT-TTTCCG---AT-ATAGTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTACAC---AAG-AAAATGGGAAACC----T-AA---A-T-ATCT-------------TCT-T--------GGA-TTAC-A-CCGTCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGGCACC-TAA-GAC--TGTA
gi|20 : t--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|3 : gATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-----ACTAA-A-----TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACG-AAA-GAAACGTCACCTCATGGTCC---AATTCCGGATCAA----CCATGT-AAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACAC---------TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTA-----TTAACACCCCCTCCC--CGCGGTAAAATAC-ATT-T-TA-AGAA--AAAT--GT--TA---ATATA-----AAGTGGACAG----TAAA-TGT-ACT--AAG---TA-T----TGCA--TTTCGATTTACATGTACTTCTTG----GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTT-ATCCTATTTTTCAAGTTATTC----CGAGC----ACCACACCC--TCACCAACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT-ATAATA-TTA-TAT-CATAA-AA-AGACT-CAAAAAAAA--AAT----AATTTTAA----AGG-AGAA--TTTTGA-ATGC-CGCAA-ATTT--GGTTA-C-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTCA-ATATAACGTTCA--------ATATAACATGTCGAC-T--ATA----CTGA-TGTCTAACTT-GTTTTTATT-TT-TA-CAAAAACA-AGATAT-CTTCT--AAGCGGGCAAAAAACCATATAG-ACATAC----C----AATTT---AAAGTTTGGGGCCG-ACTGAA---T--GT-CGAAT------CGG-ATC-ACTATG-TACAACGTTCGAAACGACCTG--CAGT-TGTTTTAAACATC---TCCGTGA-TTCGGA-AGT--G-G------C-AGTGTAATTT---------GGA---AC-TTACCT-AT-C-AAC-TTGTTT-A-TGGAAAGAGCC-A--ATGATC----GGTGATAT-TTACTACAAT-TTTCAG---AT-A-AATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT--AC---AAG-AAGATT-AAAACC----TAAA---A-T-GTCNCACGCCACCTATGTTT-TAGTAAAGGGGA---AA-A-CCGACAAA-TATC-GA-------CCATT-AAAA-TGTG-ATCCGGA-ACTGG-CCT-AAA-GAC--TGTAttcgtattaa
gi|4 : AA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGA-T-AAC-AAA--CTGTTGTAA--TACATACCT-CCCGGTTTATTACTT-TCAAAACTT-TTTTAATATAA---ACAT-AACGAACTT-TGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CATCAT-CTGGG--GGAAAATG---ATGTCA-T----AAAGTTATAGA--TCA----TATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-----AATAA-A-----AATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGC--AAA-GA---GCTA
gi|4 : tgccGCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATTTG--------TTTTTGTTTTGGT-tgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|5 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtataCACCC--TGGCCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AAT-ATA-TA-ATA-AAT-TGT-C-A--ACATT-CAGA-------------TAATGATAACATTAGG-AGAA--TTTTGA-CAGC-CTC-A-ATTT--TGGCA-ATGCCT--GAATGTGAAG-TTTT-GA-ATGTTGT------GTAA-----AACA-AAT----TAA-ATGT------CAAAA-------G-TGTTTGAATT--TTTCTACT-TC-AA-CAGAAAAA-ATGTTT-ATCATTCAA--GG--GATATA-CATACTG-ACA-AA----T----GAC-----AAATTTTGGTA-CGAATT--A---T--GT------------CGG-A-CGACAACG----AAGGCTCGAAATGCCTTG--CA-CCCGTTC--AACGTCTT---AGTGA-TTCGGACACTTGG-G------CGAGCGTGATTC---------GCA---ACATGACAC-A--TGACC-GCGGTT-C-GTGTAAAATGT-C--AAGAAC----GATCATTTGTTACAATGAT-TTTC-----------ACTAATA-TATTATTTAATAGAGTAAGCTTCTGG--TCTT
gi|6 : -----TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACC-AAA-GAAA---TACCTTCTGCTGCTTGGGTTCCGGAACAG----TCGTGT-C-AACTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTT-AAAgc
gi|6 : T-TAAAGGAAAT--ATTGTATTTACA-G-----AAGTAG-TGT----TAGA-TATGATT--AAGAAATA-TACGATGTA--TCTAGATT------TACTTCTTG----AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTATatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|7 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgta--ATATAACG--CAAAACAATTGTA-AAGATTA--AT-TCAAAAAGTAC--G-TGTCTGATTT-GTTTTTATT-TC-TT-CAGAAGCT-AGGTAT-TTCCT--AAGCGA--AATAAA-------G-A---------------ATT-------GTTTG-------ATTGAAGTTT--GTTCGAA-------CAG-ATCAACACCA-TATATTGT--GAATAGACCCA--CAGTC-GTTTCAAACGTCTT-TT--TGA-TTGGGA-ACT--G-G------C-AGTGCTAATC---------GGA---AC-TGATTTTATATAAAC-ACGATC-A-CGGAAAA-TAC-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTGCTG---AT-A-AATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TC--CTCT-TAC-------AAAAT--GAAACC----T-AA---ATT-ATCT-------------TTG-T--------AGA-TTAT-A-CCACTAGC-AATC-ACTTGCATGTAATT-AATA-TGTG-ATCTGGA-ACTGG-GCT-AAA-Ggatt
gi|8 : GAAACT-AGGCAT-ATC--------GG--AATAA----TATAGCACATATATTGT----GATTT-CAA--GTTTGGAACCGA-TTGAA---T--GT-CA----------------------G-T-CAACGTTCAAATC----TG--CAGTCT-TTTCAAATGACT---CCGTGA-TTCGCA-ACT--G-GTGGCAGC-AGTGTGATTC---------GAA---AC-TGACCG-AT--GAGC-TTGGTT-AATGGAAAA-CGC-A--AAGACC----GATTATAT-GTATAACGAT-TTTCAG---ATGAT--TTCATT-TCTTTTTCATTAGAATAA-CTTCTGA-------TCT-CAT---AAG-AAGATTGG--TCC----T-AA---ATT-ATCT-------------TTG-T--------GG----AT-A-CCCCCAGC-GATC-AT-------TAA-TAAAAA-TGTG-CTTCGGA-ACTGT-GCC-AAA-CACGGTGTAccg
gi|9 : tttttttttttacaaatcgctcggactaaatTGAGA---GTTACA----G-TACAG-T-C-GTTTGC-CTAGTTCCGGATCATG------GCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-CAAAA--CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTT-CGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AATG-TATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA
Alignments
lowQualScore : 111 44444444 11111 22222 11 11 22 11 111111 222 2 11111 111 2222 1 111 11 1 1 1 11 1 2222 22222 2222222 111 111 1 11 111 2222 1 1 2222222 2222 111 111 3333333333 1111 111 111 111 11 1 111 11 333333333333333333333 1111 11 111 1111 11 222222 2222 1111 333333333 1 555555555555 11 1 222 11 1 1 1 1 222222 1 111111111 1111 1 11 1 1 111 11 111 11 11 1 1 11 11 1111 11111 33333333333333333333 2 22222 1111 444444444444444444444444 1 111111 6666666666666666666666666666 11 222222 222222222 222222222222222 111 1 1111 1111 11111111111 111 1111 111111111111 33333333333333333333333333 2222222222
lowQualScore : 222 00000000 6 6 6 6 2 44444 2 6 33333 0 5 77 5 44 5 5 888 0 0 33 5 5 55 5 5 5 5 55 3 1 6 555555 222 0 6 6 66666 6 6 6 66 1 6 1 111 3 0 2 1111 1 0 1 777 22 0 0 0 8 11 8 0 2 1111 55555 1111111 8 444 3 0 0 444 1 1 33 8 0 5 777 1111 0 3 0 1 99 99 99 1 6 8 3 3 1111111 999 8888 8 111 6 999 6 3 1 0000000000 2 2222 111 8 8 000 0 8 999 33 0 111 8 11 333333333333333333333 0 0 7777 8 8 11 444 8 7777 11 333333 5555 1 8 2222 8 8 222222222 0 0 333333333333 3 6 9 3 2 11 3 0 8 000 2 33 3 0 3 0 0 0 2 444444 0 0 6 888888888 3333 0 1 33 0 0 0 111 33 1 777 33 33 0 0 3 99 3 33 1111 44444 5 11 77777777777777777777 0 0 0 8 8888 6 6 22222 2 99 8888 777777777777777777777777 1 2 3 1 111111 6 7777777777777777777777777777 00 1 77 4 88 1 1 333333 5 5 222222222 5 000000000000000 5 66 666 55 0 6 9 1111 2 0000 5 1 5 3 0 5 0 77777777777 6 88 0 5 66 3 777 0000 5 666 5 777777777777 5 99999999999999999999999999 77 5 5 0 5 8888888888 77 9 5 5 5 5 5 5 99
lowQualScore : ... ........ . . . . . ..... . . ..... . . .. . .. . . ... . . .. . . .. . . . . .. . . . ...... ... . . . ..... . . . .. . . . ... . . . .... . . . ... .. . . . . .. . . . .... ..... ....... . ... . . . ... . . .. . . . ... .... . . . . .. .. .. . . . . . ....... ... .... . ... . ... . . . .......... . .... ... . . ... . . ... .. . ... . .. ..................... . . .... . . .. ... . .... .. ...... .... . . .... . . ......... . . ............ . . . . . .. . . . ... . .. . . . . . . . ...... . . . ......... .... . . .. . . . ... .. . ... .. .. . . . .. . .. .... ..... . .. .................... . . . . .... . . ..... . .. .... ........................ . . . . ...... . ............................ .. . .. . .. . . ...... . . ......... . ............... . .. ... .. . . . .... . .... . . . . . . . ........... . .. . . .. . ... .... . ... . ............ . .......................... .. . . . . .......... .. . . . . . . . ..
lowQualScore : 666 44444444 7 7 7 7 5 33333 5 7 33333 6 7 99 7 11 7 7 666 7 1 33 7 7 11 7 7 7 7 88 2 0 7 000000 000 0 7 7 77777 7 7 7 77 7 7 0 555 2 2 5 2222 0 0 2 000 55 0 0 0 0 00 0 0 5 2222 00000 0000000 0 000 8 8 8 000 4 0 00 0 8 0 555 2222 0 2 0 2 22 22 22 7 7 0 8 2 8888888 888 0000 0 777 7 777 7 5 7 0000000000 5 1111 888 0 0 000 8 0 666 88 0 000 0 00 444444444444444444444 8 8 0000 0 0 00 000 0 0000 00 000000 0000 4 0 6666 0 0 000000000 8 0 222222222222 2 5 2 2 5 00 2 8 0 000 0 88 2 0 2 0 0 0 0 555555 2 0 5 222222222 2222 0 0 88 2 0 0 000 88 2 000 88 22 0 0 2 00 2 66 2222 00000 0 44 44444444444444444444 8 0 6 0 4444 7 7 00000 5 22 7777 777777777777777777777777 0 5 8 0 888888 7 8888888888888888888888888888 77 3 99 3 00 4 7 111111 7 7 999999999 0 444444444444444 0 00 666 22 0 5 4 9999 2 6666 9 0 0 4 2 0 1 11111111111 5 44 8 0 99 9 333 1111 7 111 1 111111111111 7 66666666666666666666666666 11 7 7 4 7 4444444444 44 3 7 7 7 7 7 7 22
consensus : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTT-C-AAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G------GC-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-ATGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC---T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
Reference ( family-2613 ) : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTT-CAAAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G------GC-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-ATGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC---T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
gi|1 : ACAGCT-CTGTTTGC-CC-GTTC------GTGATCATG--CAGTTCCGAATCGACTTG----TGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGA-TTA-C-AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTC-AAACTTCTT---ATATGATATACATGAACG-ACTT-CGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACATCGCGCTGTA-TATATTATCTGTTTGTCTCTCTTGAAAG-TATATA--TCACGATTATTTGCACTAAATCAT-TA-TTGCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAATAAGA-----TATTT-CTTCAACATGGGATGTATTAT---TGCAGTC-AGATGGCTTACG-AAATGAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGTCCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGT-G-ATAA-CAAAGAAC-TA-TCCGTTTTCTCAAGGATTACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAATTAT-TTGTAAA--AAAA--AT-TCG---ATA-GAGGATAAGTGGACAGTTATTAAATTAT-AGTACAAA---TAGT----TGTA--TTTTGATT------ATCTTCTTGC---GTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGT-G---TA-----AGGG-TATTCCGA-CGAGCTTCGATCCCACTCGGTCGTCAACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T-ATAATGTATA-TATCCAT-ACAG-CAGCT-CAGAGAAAATGAATTATCAATGTTAAAAT-AAGTATAATTTTTTAA-ATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TTG-AATATATTGTTC--ATATTACG-TCAAAG-AAT-ATA-AAGA-TT--AC-TT-ACA----CTGGTTGTC-GATTTCGTTTTGATTGTCGTATCAGAAACTGAGGTATGATCTTGAGAGCGA--GATATA-CATACAG-G-ATAT----CTGGTGATTTCCAAAGGTTCGGGACTGAGTTGAA---TTGGT-CGATGGGGGGG--CGG-ATC-ATTA---TCTAACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAAC--CAT-TCCGTGATTTCGGA-ACT--GT-----GC-AGTGTGAGTC---------TGA---AC-TGACCA-AA-TGAACTTCGGTTAATGG-AAAATGCTAGTAACATC----GGTGATAT-TTAC-ACAATGTTTCC----AT-AT-ATCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCT-T-CACTATAAGAAAGAGTGAAA--C---T-AGATTA-T-ATCT-------------GTC-T--------GAATTTAC-ATCCGTCAGCAAATCGGT-------TAACTAAAAATTGTGAATCCGGA-ATCGG-GCCTAAACGAC--
gi|10 : tgGATTTAT---AGAAG--TGTGAAATAT-GATAAACATACA--------TTTTTTGTTTGGT-AT-GAA-CCAAG-AC-TA-T-CGTTTTCTCAA-GATTAC---------CCCTCCCCCT--CGCGGTGAAATAC-ATT-T-TT-TTTT--AAATT-AT-AAG---ATA-G-----A-GTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTGAATGGTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAA-TTTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCG-CAACACCATACGAAAACGGCGAGGAA-T
gi|11 : TCGAATTGCCTTG--CA-CCCGTTTCAAACGTCTT---AGTGA-TTCGGA-ACT--G------GC-GGCGTGATTC---------GCA---AC-TGACAC-AT--GACC-GCGGTT-GTGTAAAA-TGT-C--AAGAAC----GATCATGT-TTACAATGAT-TTTCAGCTAAT-ATGAT--AT---ATTTTTAATTAGAGTAG-CTTCTGG--TCTTCTC---AC---GAG-AAGACTGAAACCCGTTT--------T-TTCT-------------TCG-T--------GGA-TTAT-A-CCGTGGGC-AATC-G--------TAGATGAAAA-TGTG-AT-CGGATACTGG-GCG-AAA-GAC--TGT
gi|12 : cATTCGTTG-ATAATA-TACAG-T-C-ATTTGC-CCAGTTCCGGATCATGA------CCAGTTCCAAATC-ACTTCACTTTGTA-ATT--ATCAGTT--AAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACT-GAAGGA-C-A-C-AAA---------------TATCCATCCCCGGTTTATTACTTGCT-ACACCT-CT---
gi|12 : tgtac-ACTTGCTAC-----ACCTC---TC-AT-TTA-CGCGCTTGAGGAAAA-T-TCACGCTGG---GGAAAcatttacgcgcttgaggaaaattcacgctggggaaa
gi|13 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattAGAGCCATTG-A----AATACAA-T-C-GTTTGCGCCAGTTCCGGATCA-----ATGGCCAGTTCCGAATC-ACTT-----TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|14 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaa------GC-AGTGTGATTTAAATTAATTGGACTGAC-TGACCT-AT--GTAT-TTGATT-ATGGAAAA-TGC-A--AAGACA----GAT-------------GAT-TT---G---AT-ATAAT---------------TTAGTCTAA-CTTCTGA--TCTTCTC---AC---AAG-AAGATTG-AAACA---T-AA---A-TTATTT-------------TTTGT--------GGA-TTTTTA-CCGCCAGC-AATC-GTG------TG--TGAAAA-TGTG-ATCCAGA-ACTGG-GCC-GAA-GAC--TGTA
gi|15 : AATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-C-AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTC-AAACTT-------TATAA---ACAT-AACG-ACTT-CCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATTGCGCTGGA-TGGAAAA
gi|16 : CAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-ATG--------TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATTATGACCCCCCCCCCCCC
gi|17 : cGATT-ATTG-G----C-TGCAG-TTC-ATTTGC-CCAGTT-----TCA-GATCATGGCCAGATCCGAATC-ACTT-----TGTA-ATT--TTTATTTCTAAAATATAC
gi|19 : tATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-T-A-C-AA
gi|2 : cTCTGAAATTTGTTG--------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATT-A-C--AA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAAG--ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CAT-GCGCTGGATTGGAAAACGTGCATGTCACT----AATG-TATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-AATAATTATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAA-GAAACGCTACCTCATGGACC---AATTCCGGATCAGTCGTTCGTGT-CAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATATA--------TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATTACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATAC-ATT-TATT-TAAA--AAATGGAT-AGA---ATA-A-----AAGTGGACAG----TAAA-TAT-ACT--GAA---TA-T----TGTACTTTTCGATT------TACTTTTTC----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A----A-----AAAGTTATTCTGATCGAGCTTCGAT-CCACTC--TCG-CAACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATAATAATG-ATATTAT-CAT-A-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAAT-AAG-ATAA--TTTTCACATGCTTGC-A-ATTT--GAATA-A-GCCTAAAAACGCGAAGTTTTGCAA-ATATTGTTCCAATATACTG-TCAAGA-AAT-ATATAAGATTT--ACTTTACAA----CTGG-TGTTTGATTTCGTTTTGATT-TC-TA-AAGAAACT-AGGTAT-ATCTG--AAGCAG--AATAAACCATACAG-ATATAC----T----GATTT-TAAAAGTTTGGGACTGGATTAAA---T--GT-TGG-------ATTCGGTATCAATCACGTTACAACGTTCGAATCGACCTG--CGGTTTGTTTC-AACATCTCGTCCGTGA-TTCGGA-ACTC-G------GC-AGTGTGATTC---------G-----AC-TGACCT-AT-TGAAC-TCGGTT-ATGGAAAAATGC-A--AAAATC----GGTGATAT-TTACAACAAT-TTTCCG---AT-ATAGTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTACAC---AAG-AAAATGGGAAACC---T-AA---A-T-ATCT-------------TCT-T--------GGA-TTAC-A-CCGTCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGGCACC-TAA-GAC--TGTA
gi|20 : t--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|3 : gATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-----ACTAA-A-----TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACG-AAA-GAAACGTCACCTCATGGTCC---AATTCCGGATCAA----CCATGT-AAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACAC---------TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTA-----TTAACACCCCCTCCC--CGCGGTAAAATAC-ATT-T-TA-AGAA--AAAT--GT--TA---ATATA-----AAGTGGACAG----TAAA-TGT-ACT--AAG---TA-T----TGCA--TTTCGATTTACATGTACTTCTTG----GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTT-ATCCTATTTTTCAAGTTATTC----CGAGC----ACCACACCC--TCACCAACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT-ATAATA-TTA-TAT-CATAA-AA-AGACT-CAAAAAAAA--AAT----AATTTTAA----AGG-AGAA--TTTTGA-ATGC-CGCAA-ATTT--GGTTA-C-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTCA-ATATAACGTTCA--------ATATAACATGTCGAC-T--ATA----CTGA-TGTCTAACTT-GTTTTTATT-TT-TA-CAAAAACA-AGATAT-CTTCT--AAGCGGGCAAAAAACCATATAG-ACATAC----C----AATTT---AAAGTTTGGGGCCG-ACTGAA---T--GT-CGA-------AT-CGG-ATC-ACTATG-TACAACGTTCGAAACGACCTG--CAGT-TGTTTTAAACATC---TCCGTGA-TTCGGA-AGT--G------GC-AGTGTAATTT---------GGA---AC-TTACCT-AT-C-AAC-TTGTTT-ATGGAAAGAGCC-A--ATGATC----GGTGATAT-TTACTACAAT-TTTCAG---AT-A-AATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT--AC---AAG-AAGATT-AAAACC---TAAA---A-T-GTCNCACGCCACCTATGTTT-TAGTAAAGGGGA---AA-A-CCGACAAA-TATC-GA-------CCATT-AAAA-TGTG-ATCCGGA-ACTGG-CCT-AAA-GAC--TGTAttcgtattaa
gi|4 : AA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGA-T-AAC-AAA--CTGTTGTAA--TACATACCT-CCCGGTTTATTACTT-TCAAAACTT-TTTTAATATAA---ACAT-AACGAACTT-TGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CATCAT-CTGGG--GGAAAATG---ATGTCA-T----AAAGTTATAGA--TCA----TATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-----AATAA-A-----AATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGC--AAA-GA---GCTA
gi|4 : tgccGCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATTTG--------TTTTTGTTTTGGT-tgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|5 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtataCACCC--TGGCCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AAT-ATA-TA-ATA-AAT-TGT-C-A--ACATT-CAGA-------------TAATGATAACATTAGG-AGAA--TTTTGA-CAGC-CTC-A-ATTT--TGGCA-ATGCCT--GAATGTGAAG-TTTT-GA-ATGTTGT------GTAA-----AACA-AAT----TAA-ATGT------CAAAA-------G-TGTTTGAATT--TTTCTACT-TC-AA-CAGAAAAA-ATGTTT-ATCATTCAA--GG--GATATA-CATACTG-ACA-AA----T----GAC-----AAATTTTGGTA-CGAATT--A---T--GT-CGG-------A--------CGACAACG----AAGGCTCGAAATGCCTTG--CA-CCCGTTC--AACGTCTT---AGTGA-TTCGGACACTTGG------GCGAGCGTGATTC---------GCA---ACATGACAC-A--TGACC-GCGGTT-CGTGTAAAATGT-C--AAGAAC----GATCATTTGTTACAATGAT-TTTC-----------ACTAATA-TATTATTTAATAGAGTAAGCTTCTGG--TCTT
gi|6 : -----TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACC-AAA-GAAA---TACCTTCTGCTGCTTGGGTTCCGGAACAG----TCGTGT-C-AACTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTT-AAAgc
gi|6 : T-TAAAGGAAAT--ATTGTATTTACA-G-----AAGTAG-TGT----TAGA-TATGATT--AAGAAATA-TACGATGTA--TCTAGATT------TACTTCTTG----AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTATatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|7 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgta--ATATAACG--CAAAACAATTGTA-AAGATTA--AT-TCAAAAAGTAC--G-TGTCTGATTT-GTTTTTATT-TC-TT-CAGAAGCT-AGGTAT-TTCCT--AAGCGA--AATAAA-------G-A---------------ATT-------GTTTG-------ATTGAAGTTT--GTTCGA-------A--CAG-ATCAACACCA-TATATTGT--GAATAGACCCA--CAGTC-GTTTCAAACGTCTT-TT--TGA-TTGGGA-ACT--G------GC-AGTGCTAATC---------GGA---AC-TGATTTTATATAAAC-ACGATC-ACGGAAAA-TAC-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTGCTG---AT-A-AATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TC--CTCT-TAC-------AAAAT--GAAACC---T-AA---ATT-ATCT-------------TTG-T--------AGA-TTAT-A-CCACTAGC-AATC-ACTTGCATGTAATT-AATA-TGTG-ATCTGGA-ACTGG-GCT-AAA-Ggatt
gi|8 : GAAACT-AGGCAT-AT--------CGG--AATA----ATATAGCACATATATTGT----GATTT-C--AAGTTTGGAACCG-ATTGAA---T--GT-CA------------------------G-T-CAACGTTCAAAT----CTG--CAGTCT-TTTCAAATGAC---TCCGTGA-TTCGCA-ACT--GGTGGCAGC-AGTGTGATTC---------GAA---AC-TGACCG-A--TGAGC-TTGGTTAATGG-AAAACGC-A--AAGACC----GATTATAT-GTATAACGAT-TTTCAG---ATGAT--TTCATT-TCTTTTTCATTAGAATAA-CTTCTGA-------TCT-CAT---AAG-AAGATTGG--TCC---T-AA---ATT-ATCT-------------TTG-T--------GG----AT-A-CCCCCAGC-GATC-AT-------TAA-TAAAAA-TGTG-CTTCGGA-ACTGT-GCC-AAA-CACGGTGTAccg
gi|9 : tttttttttttacaaatcgctcggactaaatTGAGA---GTTACA----G-TACAG-T-C-GTTTGC-CTAGTTCCGGATCATG------GCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-CAAAA--CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTT-CGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AATG-TATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA
Alignments
lowQualScore : 111 44444444 11111 22222 11 11 22 11 111111 222 2 11111 111 2222 1 111 11 1 1 1 11 1 2222 22222 2222222 111 111 1 11 111 2222 1 1 2222222 2222 111 111 3333333333 1111 111 111 111 11 1 111 11 333333333333333333333 1111 11 111 1111 11 222222 2222 1111 333333333 1 555555555555 11 1 222 11 1 1 1 1 222222 1 111111111 1111 1 11 1 1 111 11 111 11 11 1 1 11 11 1111 11111 33333333333333333333 2 2222 11 444444444444444444444444 111111 6666666666666666666666666666 222222 11 111111 222222222222222 111 1111 1111 11111111111 1111 111 1111111111111 33333333333333333333333333 2222222222
lowQualScore : 222 00000000 6 6 6 6 2 44444 2 6 33333 0 5 77 5 44 5 5 888 0 0 33 5 5 55 5 5 5 5 55 3 1 6 555555 222 0 6 6 66666 6 6 6 66 1 6 1 111 3 0 2 1111 1 0 1 777 22 0 0 0 8 11 8 0 2 1111 55555 1111111 8 444 3 0 0 444 1 1 33 8 0 5 777 1111 0 3 0 1 99 99 99 1 6 8 3 3 1111111 999 8888 8 111 6 999 6 3 1 0000000000 2 2222 111 8 8 000 0 8 999 33 0 111 8 11 333333333333333333333 0 0 7777 8 8 11 444 8 7777 11 333333 5555 1 8 2222 8 8 222222222 0 0 333333333333 3 6 9 3 2 11 3 0 8 000 2 33 3 0 3 0 0 0 2 444444 0 0 6 888888888 3333 0 1 33 0 0 0 111 33 1 777 33 33 0 0 3 99 3 33 1111 44444 5 11 77777777777777777777 0 0 0 8 8888 6 6 5555 2 99 55 333333333333333333333333 5 1 2 77 1 111111 6 7777777777777777777777777777 5 1 77 4 88 1 1 333333 5 5 33 5 444444 5 000000000000000 5 66 666 55 555 6 9 1111 2 0000 5 1 5 3 0 5 0 77777777777 6 0 55 0 5 66 77 88 0000 5 111 1 9999999999999 5 99999999999999999999999999 77 5 5 0 5 8888888888 77 9 5 5 5 5 5 5 99
lowQualScore : ... ........ . . . . . ..... . . ..... . . .. . .. . . ... . . .. . . .. . . . . .. . . . ...... ... . . . ..... . . . .. . . . ... . . . .... . . . ... .. . . . . .. . . . .... ..... ....... . ... . . . ... . . .. . . . ... .... . . . . .. .. .. . . . . . ....... ... .... . ... . ... . . . .......... . .... ... . . ... . . ... .. . ... . .. ..................... . . .... . . .. ... . .... .. ...... .... . . .... . . ......... . . ............ . . . . . .. . . . ... . .. . . . . . . . ...... . . . ......... .... . . .. . . . ... .. . ... .. .. . . . .. . .. .... ..... . .. .................... . . . . .... . . .... . .. .. ........................ . . . .. . ...... . ............................ . . .. . .. . . ...... . . .. . ...... . ............... . .. ... .. ... . . .... . .... . . . . . . . ........... . . .. . . .. .. .. .... . ... . ............. . .......................... .. . . . . .......... .. . . . . . . . ..
lowQualScore : 666 44444444 7 7 7 7 5 33333 5 7 33333 6 7 99 7 11 7 7 666 7 1 33 7 7 11 7 7 7 7 88 2 0 7 000000 000 0 7 7 77777 7 7 7 77 7 7 0 555 2 2 5 2222 0 0 2 000 55 0 0 0 0 00 0 0 5 2222 00000 0000000 0 000 8 8 8 000 4 0 00 0 8 0 555 2222 0 2 0 2 22 22 22 7 7 0 8 2 8888888 888 0000 0 777 7 777 7 5 7 0000000000 5 1111 888 0 0 000 8 0 666 88 0 000 0 00 444444444444444444444 8 8 0000 0 0 00 000 0 0000 00 000000 0000 4 0 6666 0 0 000000000 8 0 222222222222 2 5 2 2 5 00 2 8 0 000 0 88 2 0 2 0 0 0 0 555555 2 0 5 222222222 2222 0 0 88 2 0 0 000 88 2 000 88 22 0 0 2 00 2 66 2222 00000 0 44 44444444444444444444 8 0 6 0 4444 7 7 2222 5 22 88 000000000000000000000000 7 0 5 33 0 888888 7 8888888888888888888888888888 4 3 99 3 00 4 7 111111 7 7 66 0 444444 0 444444444444444 0 00 666 22 999 5 4 9999 2 6666 9 0 0 4 2 0 1 11111111111 5 1 22 8 0 99 00 77 1111 7 000 7 3333333333333 7 66666666666666666666666666 11 7 7 4 7 4444444444 44 3 7 7 7 7 7 7 22
consensus : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTTC--AAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
Reference ( family-2613 ) : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTTC--AAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
gi|1 : ACAGCT-CTGTTTGC-CC-GTTC------GTGATCATG--CAGTTCCGAATCGACTTG----TGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGA-TTA-C-AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTC-AAACTTCTT---ATATGATATACATGAACG-ACTT-CGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACATCGCGCTGTA-TATATTATCTGTTTGTCTCTCTTGAAAG-TATATA--TCACGATTATTTGCACTAAATCAT-TA-TTGCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAATAAGA-----TATTT-CTTCAACATGGGATGTATTAT---TGCAGTC-AGATGGCTTACG-AAATGAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGTCCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGT-G-ATAA-CAAAGAAC-TA-TCCGTTTTCTCAAGGATTACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAATTAT-TTGTAAA--AAAA--AT-TCG---ATA-GAGGATAAGTGGACAGTTATTAAATTAT-AGTACAAA---TAGT----TGTA--TTTTGATT------ATCTTCTTGC---GTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGT-G---TA-----AGGG-TATTCCGA-CGAGCTTCGATCCCACTCGGTCGTCAACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T-ATAATGTATA-TATCCAT-ACAG-CAGCT-CAGAGAAAATGAATTATCAATGTTAAAAT-AAGTATAATTTTTTAA-ATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TTG-AATATATTGTTC--ATATTACG-TCAAAG-AAT-ATA-AAGA-TT--AC-TT-ACA----CTGGTTGTC-GATTTCGTTTTGATTGTCGTATCAGAAACTGAGGTATGATCTTGAGAGCGA--GATATA-CATACAG-G-ATAT----CTGGTGATTTCCAAAGGTTCGGGACTGAGTTGAA---TTGGT-CGATGGGGGGG--CGG-ATC-ATTA---TCTAACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAAC--CAT-TCCGTGATTTCGGA-ACT--GTG------C-AGTGTGAGTC---------TGA---AC-TGACCA-AA-TGAACTTCGGTTAA-TGG-AAAATGCTAGTAACATC----GGTGATAT-TTAC-ACAATGTTTCC----AT-AT-ATCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCT-T-CACTATAAGAAAGAGTGAAA--C----T-AGATTA-T-ATCT-------------GTC-T--------GAATTTAC-ATCCGTCAGCAAATCGGT-------TAACTAAAAATTGTGAATCCGGA-ATCGG-GCCTAAACGAC--
gi|10 : tgGATTTAT---AGAAG--TGTGAAATAT-GATAAACATACA--------TTTTTTGTTTGGT-AT-GAA-CCAAG-AC-TA-T-CGTTTTCTCAA-GATTAC---------CCCTCCCCCT--CGCGGTGAAATAC-ATT-T-TT-TTTT--AAATT-AT-AAG---ATA-G-----A-GTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTGAATGGTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAA-TTTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCG-CAACACCATACGAAAACGGCGAGGAA-T
gi|11 : TCGAATTGCCTTG--CA-CCCGTTTCAAACGTCTT---AGTGA-TTCGGA-ACT--G-G------C-GGCGTGATTC---------GCA---AC-TGACAC-A--TGACC-GCGGTT-G-TGT-AAAATGT-C--AAGAAC----GATCATGT-TTACAATGAT-TTTCAGCTAAT-ATGAT-A----TATTTTTAATTAGAGTAG-CTTCTGG--TCT--TCT-CAC---GAG-AAGACT-GAAACCCGTTT--------T-TTCT-------------TCG-T--------GGA-TTAT-A-CCGTGGGC-AATC-G--------TAGATGAAAA-TGTG-AT-CGGATACTGG-GCG-AAA-GAC--TGT
gi|12 : cATTCGTTG-ATAATA-TACAG-T-C-ATTTGC-CCAGTTCCGGATCATGA------CCAGTTCCAAATC-ACTTCACTTTGTA-ATT--ATCAGTT--AAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACT-GAAGGA-C-A-C-AAA---------------TATCCATCCCCGGTTTATTACTTGCT-ACACCT-CT---
gi|12 : tgtac-ACTTGCTAC-----ACCTC---TC-AT-TTA-CGCGCTTGAGGAAAA-T-TCACGCTGG---GGAAAcatttacgcgcttgaggaaaattcacgctggggaaa
gi|13 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattAGAGCCATTG-A----AATACAA-T-C-GTTTGCGCCAGTTCCGGATCA-----ATGGCCAGTTCCGAATC-ACTT-----TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|14 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaa-G------C-AGTGTGATTTAAATTAATTGGACTGAC-TGACCT-AT--GTAT-TTGATT-A-TGGAAAA-TGC-A--AAGACA----GAT-------------GAT-TT---G---AT-ATAAT---------------TTAGTCTAA-CTTCTGA--TCTTCTC---AC---AAG-AAGATTG-AAACA----T-AA---A-TTATTT-------------TTTGT--------GGA-TTTTTA-CCGCCAGC-AATC-GTG------TG--TGAAAA-TGTG-ATCCAGA-ACTGG-GCC-GAA-GAC--TGTA
gi|15 : AATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-C-AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTC-AAACTT-------TATAA---ACAT-AACG-ACTT-CCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATTGCGCTGGA-TGGAAAA
gi|16 : CAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-ATG--------TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATTATGACCCCCCCCCCCCC
gi|17 : cGATT-ATTG-G----C-TGCAG-TTC-ATTTGC-CCAGTT-----TCA-GATCATGGCCAGATCCGAATC-ACTT-----TGTA-ATT--TTTATTTCTAAAATATAC
gi|19 : tATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-T-A-C-AA
gi|2 : cTCTGAAATTTGTTG--------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATT-A-C--AA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAAG--ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CAT-GCGCTGGATTGGAAAACGTGCATGTCACT----AATG-TATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-AATAATTATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAA-GAAACGCTACCTCATGGACC---AATTCCGGATCAGTCGTTCGTGT-CAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATATA--------TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATTACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATAC-ATT-TATT-TAAA--AAATGGAT-AGA---ATA-A-----AAGTGGACAG----TAAA-TAT-ACT--GAA---TA-T----TGTACTTTTCGATT------TACTTTTTC----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A----A-----AAAGTTATTCTGATCGAGCTTCGAT-CCACTC--TCG-CAACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATAATAATG-ATATTAT-CAT-A-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAAT-AAG-ATAA--TTTTCACATGCTTGC-A-ATTT--GAATA-A-GCCTAAAAACGCGAAGTTTTGCAA-ATATTGTTCCAATATACTG-TCAAGA-AAT-ATATAAGATTT--ACTTTACAA----CTGG-TGTTTGATTTCGTTTTGATT-TC-TA-AAGAAACT-AGGTAT-ATCTG--AAGCAG--AATAAACCATACAG-ATATAC----T----GATTTTA-AAAGTTTGGGACTGGATTAAA---T--GT-TGG-------ATTCGGTATCAATCACGTTACAACGTTCGAATCGACCTG--CGGTTTGTTTC-AACATCTCGTCCGTGA-TTCGGA-ACTC-G-G------C-AGTGTGATTC---------G-----AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAAATC----GGTGATAT-TTACAACAAT-TTTCCG---AT-ATAGTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTACAC---AAG-AAAATGGGAAACC----T-AA---A-T-ATCT-------------TCT-T--------GGA-TTAC-A-CCGTCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGGCACC-TAA-GAC--TGTA
gi|20 : t--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|3 : gATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-----ACTAA-A-----TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACG-AAA-GAAACGTCACCTCATGGTCC---AATTCCGGATCAA----CCATGT-AAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACAC---------TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTA-----TTAACACCCCCTCCC--CGCGGTAAAATAC-ATT-T-TA-AGAA--AAAT--GT--TA---ATATA-----AAGTGGACAG----TAAA-TGT-ACT--AAG---TA-T----TGCA--TTTCGATTTACATGTACTTCTTG----GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTT-ATCCTATTTTTCAAGTTATTC----CGAGC----ACCACACCC--TCACCAACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT-ATAATA-TTA-TAT-CATAA-AA-AGACT-CAAAAAAAA--AAT----AATTTTAA----AGG-AGAA--TTTTGA-ATGC-CGCAA-ATTT--GGTTA-C-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTCA-ATATAACGTTCA--------ATATAACATGTCGAC-T--ATA----CTGA-TGTCTAACTT-GTTTTTATT-TT-TA-CAAAAACA-AGATAT-CTTCT--AAGCGGGCAAAAAACCATATAG-ACATAC----C----AATTT---AAAGTTTGGGGCCG-ACTGAA---T--GT-CGA-------AT-CGG-ATC-ACTATG-TACAACGTTCGAAACGACCTG--CAGT-TGTTTTAAACATC---TCCGTGA-TTCGGA-AGT--G-G------C-AGTGTAATTT---------GGA---AC-TTACCT-AT-C-AAC-TTGTTT-A-TGGAAAGAGCC-A--ATGATC----GGTGATAT-TTACTACAAT-TTTCAG---AT-A-AATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT--AC---AAG-AAGATT-AAAACC----TAAA---A-T-GTCNCACGCCACCTATGTTT-TAGTAAAGGGGA---AA-A-CCGACAAA-TATC-GA-------CCATT-AAAA-TGTG-ATCCGGA-ACTGG-CCT-AAA-GAC--TGTAttcgtattaa
gi|4 : AA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGA-T-AAC-AAA--CTGTTGTAA--TACATACCT-CCCGGTTTATTACTT-TCAAAACTT-TTTTAATATAA---ACAT-AACGAACTT-TGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CATCAT-CTGGG--GGAAAATG---ATGTCA-T----AAAGTTATAGA--TCA----TATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-----AATAA-A-----AATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGC--AAA-GA---GCTA
gi|4 : tgccGCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATTTG--------TTTTTGTTTTGGT-tgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|5 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtataCACCC--TGGCCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AAT-ATA-TA-ATA-AAT-TGT-C-A--ACATT-CAGA-------------TAATGATAACATTAGG-AGAA--TTTTGA-CAGC-CTC-A-ATTT--TGGCA-ATGCCT--GAATGTGAAG-TTTT-GA-ATGTTGT------GTAA-----AACA-AAT----TAA-ATGT------CAAAA-------G-TGTTTGAATT--TTTCTACT-TC-AA-CAGAAAAA-ATGTTT-ATCATTCAA--GG--GATATA-CATACTG-ACA-AA----T----GA---C--AAATTTTGGTA-CGAATT--A---T--GT-CGG-------A--------CGACAACG----AAGGCTCGAAATGCCTTG--CA-CCCGTTC--AACGTCTT---AGTGA-TTCGGACACTTGG-G------CGAGCGTGATTC---------GCA---ACATGACAC-A--TGACC-GCGGTT-C-GTGTAAAATGT-C--AAGAAC----GATCATTTGTTACAATGAT-TTTC-----------ACTAATA-TATTATTTAATAGAGTAAGCTTCTGG--TCTT
gi|6 : -----TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACC-AAA-GAAA---TACCTTCTGCTGCTTGGGTTCCGGAACAG----TCGTGT-C-AACTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTT-AAAgc
gi|6 : T-TAAAGGAAAT--ATTGTATTTACA-G-----AAGTAG-TGT----TAGA-TATGATT--AAGAAATA-TACGATGTA--TCTAGATT------TACTTCTTG----AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTATatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|7 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgta--ATATAACG--CAAAACAATTGTA-AAGATTA--AT-TCAAAAAGTAC--G-TGTCTGATTT-GTTTTTATT-TC-TT-CAGAAGCT-AGGTAT-TTCCT--AAGCGA--AATAAA-------G-A---------------ATT-------GTTTG-------ATTGAAGTTT--GTTCGA-------A--CAG-ATCAACACCA-TATATTGT--GAATAGACCCA--CAGTC-GTTTCAAACGTCTT-TT--TGA-TTGGGA-ACT--G-G------C-AGTGCTAATC---------GGA---AC-TGATTTTATATAAAC-ACGATC-A-CGGAAAA-TAC-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTGCTG---AT-A-AATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TC--CTCT-TAC-------AAAAT--GAAACC----T-AA---ATT-ATCT-------------TTG-T--------AGA-TTAT-A-CCACTAGC-AATC-ACTTGCATGTAATT-AATA-TGTG-ATCTGGA-ACTGG-GCT-AAA-Ggatt
gi|8 : GAAACT-AGGCAT-ATC--------GG--AATAA----TATAGCACATATATTGT----GATTTC--AA-GTTTGGAACCGA-TTGAA---T--GT-CA------------------------G-T-CAACGTTCAAATC----TG--CAGTCT-TTTCAAATGACT---CCGTGA-TTCGCA-ACT--G-GTGGCAGC-AGTGTGATTC---------GAA---AC-TGACCG-AT--GAGC-TTGGTT-AATGGAAAA-CGC-A--AAGACC----GATTATAT-GTATAACGAT-TTTCAG---ATGAT--TTCATT-TCTTTTTCATTAGAATAA-CTTCTGA-------TCT-CAT---AAG-AAGATTGG--TCC----T-AA---ATT-ATCT-------------TTG-T--------GG----AT-A-CCCCCAGC-GATC-AT-------TAA-TAAAAA-TGTG-CTTCGGA-ACTGT-GCC-AAA-CACGGTGTAccg
gi|9 : tttttttttttacaaatcgctcggactaaatTGAGA---GTTACA----G-TACAG-T-C-GTTTGC-CTAGTTCCGGATCATG------GCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-CAAAA--CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTT-CGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AATG-TATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA
Alignments
lowQualScore : 111 44444444 11111 22222 11 11 22 11 111111 222 2 11111 111 2222 1 111 11 1 1 1 11 1 2222 22222 2222222 111 111 1 11 111 2222 1 1 2222222 2222 111 111 3333333333 1111 111 111 111 11 1 111 11 333333333333333333333 1111 11 111 1111 11 222222 2222 1111 333333333 1 555555555555 11 1 222 11 1 1 1 1 222222 1 111111111 1111 1 11 1 1 111 11 111 11 11 1 1 11 11 1111 11111 33333333333333333333 2 2222 11 444444444444444444444444 111111 6666666666666666666666666666 222222 11 111111 222222222222222 111 1111 1111 11111111111 1111 111 1111111111111 33333333333333333333333333 2222222222
lowQualScore : 222 00000000 6 6 6 6 2 44444 2 6 33333 0 5 77 5 44 5 5 888 0 0 33 5 5 55 5 5 5 5 55 3 1 6 555555 222 0 6 6 66666 6 6 6 66 1 6 1 111 3 0 2 1111 1 0 1 777 22 0 0 0 8 11 8 0 2 1111 55555 1111111 8 444 3 0 0 444 1 1 33 8 0 5 777 1111 0 3 0 1 99 99 99 1 6 8 3 3 1111111 999 8888 8 111 6 999 6 3 1 0000000000 2 2222 111 8 8 000 0 8 999 33 0 111 8 11 333333333333333333333 0 0 7777 8 8 11 444 8 7777 11 333333 5555 1 8 2222 8 8 222222222 0 0 333333333333 3 6 9 3 2 11 3 0 8 000 2 33 3 0 3 0 0 0 2 444444 0 0 6 888888888 3333 0 1 33 0 0 0 111 33 1 777 33 33 0 0 3 99 3 33 1111 44444 5 11 77777777777777777777 0 0 0 8 8888 6 6 5555 2 99 55 333333333333333333333333 5 1 2 77 1 111111 6 7777777777777777777777777777 5 1 77 4 88 1 1 333333 5 5 33 5 444444 5 000000000000000 5 66 666 55 555 6 9 1111 2 0000 5 1 5 3 0 5 0 77777777777 6 0 55 0 5 66 77 88 0000 5 111 1 9999999999999 5 99999999999999999999999999 77 5 5 0 5 8888888888 77 9 5 5 5 5 5 5 99
lowQualScore : ... ........ . . . . . ..... . . ..... . . .. . .. . . ... . . .. . . .. . . . . .. . . . ...... ... . . . ..... . . . .. . . . ... . . . .... . . . ... .. . . . . .. . . . .... ..... ....... . ... . . . ... . . .. . . . ... .... . . . . .. .. .. . . . . . ....... ... .... . ... . ... . . . .......... . .... ... . . ... . . ... .. . ... . .. ..................... . . .... . . .. ... . .... .. ...... .... . . .... . . ......... . . ............ . . . . . .. . . . ... . .. . . . . . . . ...... . . . ......... .... . . .. . . . ... .. . ... .. .. . . . .. . .. .... ..... . .. .................... . . . . .... . . .... . .. .. ........................ . . . .. . ...... . ............................ . . .. . .. . . ...... . . .. . ...... . ............... . .. ... .. ... . . .... . .... . . . . . . . ........... . . .. . . .. .. .. .... . ... . ............. . .......................... .. . . . . .......... .. . . . . . . . ..
lowQualScore : 666 44444444 7 7 7 7 5 33333 5 7 33333 6 7 99 7 11 7 7 666 7 1 33 7 7 11 7 7 7 7 88 2 0 7 000000 000 0 7 7 77777 7 7 7 77 7 7 0 555 2 2 5 2222 0 0 2 000 55 0 0 0 0 00 0 0 5 2222 00000 0000000 0 000 8 8 8 000 4 0 00 0 8 0 555 2222 0 2 0 2 22 22 22 7 7 0 8 2 8888888 888 0000 0 777 7 777 7 5 7 0000000000 5 1111 888 0 0 000 8 0 666 88 0 000 0 00 444444444444444444444 8 8 0000 0 0 00 000 0 0000 00 000000 0000 4 0 6666 0 0 000000000 8 0 222222222222 2 5 2 2 5 00 2 8 0 000 0 88 2 0 2 0 0 0 0 555555 2 0 5 222222222 2222 0 0 88 2 0 0 000 88 2 000 88 22 0 0 2 00 2 66 2222 00000 0 44 44444444444444444444 8 0 6 0 4444 7 7 2222 5 22 88 000000000000000000000000 7 0 5 33 0 888888 7 8888888888888888888888888888 4 3 99 3 00 4 7 111111 7 7 66 0 444444 0 444444444444444 0 00 666 22 999 5 4 9999 2 6666 9 0 0 4 2 0 1 11111111111 5 1 22 8 0 99 00 77 1111 7 000 7 3333333333333 7 66666666666666666666666666 11 7 7 4 7 4444444444 44 3 7 7 7 7 7 7 22
consensus : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTTC--AAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
Reference ( family-2613 ) : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTTC--AAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
gi|1 : ACAGCT-CTGTTTGC-CC-GTTC------GTGATCATG--CAGTTCCGAATCGACTTG----TGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGA-TTA-C-AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTC-AAACTTCTT---ATATGATATACATGAACG-ACTT-CGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACATCGCGCTGTA-TATATTATCTGTTTGTCTCTCTTGAAAG-TATATA--TCACGATTATTTGCACTAAATCAT-TA-TTGCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAATAAGA-----TATTT-CTTCAACATGGGATGTATTAT---TGCAGTC-AGATGGCTTACG-AAATGAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGTCCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGT-G-ATAA-CAAAGAAC-TA-TCCGTTTTCTCAAGGATTACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAATTAT-TTGTAAA--AAAA--AT-TCG---ATA-GAGGATAAGTGGACAGTTATTAAATTAT-AGTACAAA---TAGT----TGTA--TTTTGATT------ATCTTCTTGC---GTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGT-G---TA-----AGGG-TATTCCGA-CGAGCTTCGATCCCACTCGGTCGTCAACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T-ATAATGTATA-TATCCAT-ACAG-CAGCT-CAGAGAAAATGAATTATCAATGTTAAAAT-AAGTATAATTTTTTAA-ATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TTG-AATATATTGTTC--ATATTACG-TCAAAG-AAT-ATA-AAGA-TT--AC-TT-ACA----CTGGTTGTC-GATTTCGTTTTGATTGTCGTATCAGAAACTGAGGTATGATCTTGAGAGCGA--GATATA-CATACAG-G-ATAT----CTGGTGATTTCCAAAGGTTCGGGACTGAGTTGAA---TTGGT-CGATGGGGGGG--CGG-ATC-ATTA---TCTAACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAAC--CAT-TCCGTGATTTCGGA-ACT--GTG------C-AGTGTGAGTC---------TGA---AC-TGACCA-AA-TGAACTTCGGTTAA-TGG-AAAATGCTAGTAACATC----GGTGATAT-TTAC-ACAATGTTTCC----AT-AT-ATCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCT-T-CACTATAAGAAAGAGTGAAA--C----T-AGATTA-T-ATCT-------------GTC-T--------GAATTTAC-ATCCGTCAGCAAATCGGT-------TAACTAAAAATTGTGAATCCGGA-ATCGG-GCCTAAACGAC--
gi|10 : tgGATTTAT---AGAAG--TGTGAAATAT-GATAAACATACA--------TTTTTTGTTTGGT-AT-GAA-CCAAG-AC-TA-T-CGTTTTCTCAA-GATTAC---------CCCTCCCCCT--CGCGGTGAAATAC-ATT-T-TT-TTTT--AAATT-AT-AAG---ATA-G-----A-GTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTGAATGGTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAA-TTTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCG-CAACACCATACGAAAACGGCGAGGAA-T
gi|11 : TCGAATTGCCTTG--CA-CCCGTTTCAAACGTCTT---AGTGA-TTCGGA-ACT--G-G------C-GGCGTGATTC---------GCA---AC-TGACAC-A--TGACC-GCGGTT-G-TGT-AAAATGT-C--AAGAAC----GATCATGT-TTACAATGAT-TTTCAGCTAAT-ATGAT-A----TATTTTTAATTAGAGTAG-CTTCTGG--TCT--TCT-CAC---GAG-AAGACT-GAAACCCGTTT--------T-TTCT-------------TCG-T--------GGA-TTAT-A-CCGTGGGC-AATC-G--------TAGATGAAAA-TGTG-AT-CGGATACTGG-GCG-AAA-GAC--TGT
gi|12 : cATTCGTTG-ATAATA-TACAG-T-C-ATTTGC-CCAGTTCCGGATCATGA------CCAGTTCCAAATC-ACTTCACTTTGTA-ATT--ATCAGTT--AAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACT-GAAGGA-C-A-C-AAA---------------TATCCATCCCCGGTTTATTACTTGCT-ACACCT-CT---
gi|12 : tgtac-ACTTGCTAC-----ACCTC---TC-AT-TTA-CGCGCTTGAGGAAAA-T-TCACGCTGG---GGAAAcatttacgcgcttgaggaaaattcacgctggggaaa
gi|13 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattAGAGCCATTG-A----AATACAA-T-C-GTTTGCGCCAGTTCCGGATCA-----ATGGCCAGTTCCGAATC-ACTT-----TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|14 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaa-G------C-AGTGTGATTTAAATTAATTGGACTGAC-TGACCT-AT--GTAT-TTGATT-A-TGGAAAA-TGC-A--AAGACA----GAT-------------GAT-TT---G---AT-ATAAT---------------TTAGTCTAA-CTTCTGA--TCTTCTC---AC---AAG-AAGATTG-AAACA----T-AA---A-TTATTT-------------TTTGT--------GGA-TTTTTA-CCGCCAGC-AATC-GTG------TG--TGAAAA-TGTG-ATCCAGA-ACTGG-GCC-GAA-GAC--TGTA
gi|15 : AATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-C-AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTC-AAACTT-------TATAA---ACAT-AACG-ACTT-CCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATTGCGCTGGA-TGGAAAA
gi|16 : CAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-ATG--------TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATTATGACCCCCCCCCCCCC
gi|17 : cGATT-ATTG-G----C-TGCAG-TTC-ATTTGC-CCAGTT-----TCA-GATCATGGCCAGATCCGAATC-ACTT-----TGTA-ATT--TTTATTTCTAAAATATAC
gi|19 : tATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-T-A-C-AA
gi|2 : cTCTGAAATTTGTTG--------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATT-A-C--AA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAAG--ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CAT-GCGCTGGATTGGAAAACGTGCATGTCACT----AATG-TATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-AATAATTATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAA-GAAACGCTACCTCATGGACC---AATTCCGGATCAGTCGTTCGTGT-CAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATATA--------TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATTACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATAC-ATT-TATT-TAAA--AAATGGAT-AGA---ATA-A-----AAGTGGACAG----TAAA-TAT-ACT--GAA---TA-T----TGTACTTTTCGATT------TACTTTTTC----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A----A-----AAAGTTATTCTGATCGAGCTTCGAT-CCACTC--TCG-CAACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATAATAATG-ATATTAT-CAT-A-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAAT-AAG-ATAA--TTTTCACATGCTTGC-A-ATTT--GAATA-A-GCCTAAAAACGCGAAGTTTTGCAA-ATATTGTTCCAATATACTG-TCAAGA-AAT-ATATAAGATTT--ACTTTACAA----CTGG-TGTTTGATTTCGTTTTGATT-TC-TA-AAGAAACT-AGGTAT-ATCTG--AAGCAG--AATAAACCATACAG-ATATAC----T----GATTTTA-AAAGTTTGGGACTGGATTAAA---T--GT-TGG-------ATTCGGTATCAATCACGTTACAACGTTCGAATCGACCTG--CGGTTTGTTTC-AACATCTCGTCCGTGA-TTCGGA-ACTC-G-G------C-AGTGTGATTC---------G-----AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAAATC----GGTGATAT-TTACAACAAT-TTTCCG---AT-ATAGTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTACAC---AAG-AAAATGGGAAACC----T-AA---A-T-ATCT-------------TCT-T--------GGA-TTAC-A-CCGTCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGGCACC-TAA-GAC--TGTA
gi|20 : t--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|3 : gATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-----ACTAA-A-----TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACG-AAA-GAAACGTCACCTCATGGTCC---AATTCCGGATCAA----CCATGT-AAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACAC---------TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTA-----TTAACACCCCCTCCC--CGCGGTAAAATAC-ATT-T-TA-AGAA--AAAT--GT--TA---ATATA-----AAGTGGACAG----TAAA-TGT-ACT--AAG---TA-T----TGCA--TTTCGATTTACATGTACTTCTTG----GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTT-ATCCTATTTTTCAAGTTATTC----CGAGC----ACCACACCC--TCACCAACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT-ATAATA-TTA-TAT-CATAA-AA-AGACT-CAAAAAAAA--AAT----AATTTTAA----AGG-AGAA--TTTTGA-ATGC-CGCAA-ATTT--GGTTA-C-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTCA-ATATAACGTTCA--------ATATAACATGTCGAC-T--ATA----CTGA-TGTCTAACTT-GTTTTTATT-TT-TA-CAAAAACA-AGATAT-CTTCT--AAGCGGGCAAAAAACCATATAG-ACATAC----C----AATTT---AAAGTTTGGGGCCG-ACTGAA---T--GT-CGA-------AT-CGG-ATC-ACTATG-TACAACGTTCGAAACGACCTG--CAGT-TGTTTTAAACATC---TCCGTGA-TTCGGA-AGT--G-G------C-AGTGTAATTT---------GGA---AC-TTACCT-AT-C-AAC-TTGTTT-A-TGGAAAGAGCC-A--ATGATC----GGTGATAT-TTACTACAAT-TTTCAG---AT-A-AATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT--AC---AAG-AAGATT-AAAACC----TAAA---A-T-GTCNCACGCCACCTATGTTT-TAGTAAAGGGGA---AA-A-CCGACAAA-TATC-GA-------CCATT-AAAA-TGTG-ATCCGGA-ACTGG-CCT-AAA-GAC--TGTAttcgtattaa
gi|4 : AA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGA-T-AAC-AAA--CTGTTGTAA--TACATACCT-CCCGGTTTATTACTT-TCAAAACTT-TTTTAATATAA---ACAT-AACGAACTT-TGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CATCAT-CTGGG--GGAAAATG---ATGTCA-T----AAAGTTATAGA--TCA----TATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-----AATAA-A-----AATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGC--AAA-GA---GCTA
gi|4 : tgccGCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATTTG--------TTTTTGTTTTGGT-tgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|5 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtataCACCC--TGGCCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AAT-ATA-TA-ATA-AAT-TGT-C-A--ACATT-CAGA-------------TAATGATAACATTAGG-AGAA--TTTTGA-CAGC-CTC-A-ATTT--TGGCA-ATGCCT--GAATGTGAAG-TTTT-GA-ATGTTGT------GTAA-----AACA-AAT----TAA-ATGT------CAAAA-------G-TGTTTGAATT--TTTCTACT-TC-AA-CAGAAAAA-ATGTTT-ATCATTCAA--GG--GATATA-CATACTG-ACA-AA----T----GA---C--AAATTTTGGTA-CGAATT--A---T--GT-CGG-------A--------CGACAACG----AAGGCTCGAAATGCCTTG--CA-CCCGTTC--AACGTCTT---AGTGA-TTCGGACACTTGG-G------CGAGCGTGATTC---------GCA---ACATGACAC-A--TGACC-GCGGTT-C-GTGTAAAATGT-C--AAGAAC----GATCATTTGTTACAATGAT-TTTC-----------ACTAATA-TATTATTTAATAGAGTAAGCTTCTGG--TCTT
gi|6 : -----TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACC-AAA-GAAA---TACCTTCTGCTGCTTGGGTTCCGGAACAG----TCGTGT-C-AACTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTT-AAAgc
gi|6 : T-TAAAGGAAAT--ATTGTATTTACA-G-----AAGTAG-TGT----TAGA-TATGATT--AAGAAATA-TACGATGTA--TCTAGATT------TACTTCTTG----AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTATatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|7 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgta--ATATAACG--CAAAACAATTGTA-AAGATTA--AT-TCAAAAAGTAC--G-TGTCTGATTT-GTTTTTATT-TC-TT-CAGAAGCT-AGGTAT-TTCCT--AAGCGA--AATAAA-------G-A---------------ATT-------GTTTG-------ATTGAAGTTT--GTTCGA-------A--CAG-ATCAACACCA-TATATTGT--GAATAGACCCA--CAGTC-GTTTCAAACGTCTT-TT--TGA-TTGGGA-ACT--G-G------C-AGTGCTAATC---------GGA---AC-TGATTTTATATAAAC-ACGATC-A-CGGAAAA-TAC-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTGCTG---AT-A-AATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TC--CTCT-TAC-------AAAAT--GAAACC----T-AA---ATT-ATCT-------------TTG-T--------AGA-TTAT-A-CCACTAGC-AATC-ACTTGCATGTAATT-AATA-TGTG-ATCTGGA-ACTGG-GCT-AAA-Ggatt
gi|8 : GAAACT-AGGCAT-ATC--------GG--AATAA----TATAGCACATATATTGT----GATTTC--AA-GTTTGGAACCGA-TTGAA---T--GT-CA------------------------G-T-CAACGTTCAAATC----TG--CAGTCT-TTTCAAATGACT---CCGTGA-TTCGCA-ACT--G-GTGGCAGC-AGTGTGATTC---------GAA---AC-TGACCG-AT--GAGC-TTGGTT-AATGGAAAA-CGC-A--AAGACC----GATTATAT-GTATAACGAT-TTTCAG---ATGAT--TTCATT-TCTTTTTCATTAGAATAA-CTTCTGA-------TCT-CAT---AAG-AAGATTGG--TCC----T-AA---ATT-ATCT-------------TTG-T--------GG----AT-A-CCCCCAGC-GATC-AT-------TAA-TAAAAA-TGTG-CTTCGGA-ACTGT-GCC-AAA-CACGGTGTAccg
gi|9 : tttttttttttacaaatcgctcggactaaatTGAGA---GTTACA----G-TACAG-T-C-GTTTGC-CTAGTTCCGGATCATG------GCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-CAAAA--CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTT-CGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AATG-TATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCT
blockSeqs : GCC AAA . T . G C TGATC G . CACTT C . C TA . . C AT . A GG T . A A T T C A TTTTA G G A G ATCTG T . . AA G . C ATT T C . T T A TTT C . A T . . . . G GAAT . AATAAT A . A CGT A A GA . C TTG TCGT . A . C TT . GC A A . T G CATTGAT AAA ATGG . AAA G AGT . T T CA G TATA CCA . G AC . TGA CT . TA . GG ATTGTATTTACAG . . G . AAA . ACGA CT TACATG AATG C . TTA . G CAACTTTCA G ATCCTATTTTT T C T T C . C G AC T TA A A A . T . A AAGC G G TGAATTATC CATT . T . C T AA . A AT AA TT C . T CA T TT AAAC ATAT G TT ATTCAAAAAGTACG C . TA . . ATTC G GC CC CACATATATTGTGATTTC A G C GA A GTTT T GATTCGGTATCAATCACGTTA T C . G CC A G TCGTCC . C TG . TGGCAG G AAATTAATTGGACTG A TT TAT G AA A A C A ATAT C G G A . AGCTAATATG C T G AT TT AC G . GGG A CGTTT T CACGCCACCTATGTTTTAGTAAAGG T T . . ACTTGCATG GA G . . T C . . GG
blockSeqs : TTT CAG . . . . C GATC G . . . . . A . . C AT . . G . . . . . T C . CT . . . . . . . . AA A . T AT T C . A . G T C . . . . . . . G . . A . . A . A C G . C . . . A . T . . . A . . T A AA TC . . . G AT . T T TG G ATA CC . . T . CAC . . T . . GGATAGAATAA . . . . . . . . . . C . TT . . . . AATTTA T T T T C . C . TT T . A . A . . . A AAAA . A AAT AAT . G . . . A . T A . T . . T A C T AGA ATAT C TG ACTTTACAACTGG . . TA . . TG G . CC ATATACTGATTTTA A G C AA G T . AATCGGATCACTATGTA T A . G TT A A TTTT . . C . . . GCA . C TT T G A A A C . G A . A . CGATATA C T . . CT C A . TGG A TAAAA . TTTGT T . . . GTG AT G . . . . . . .
blockSeqs : TT GC . . . . C TGA G . . . . . A . . C AT . . G . . . . . T C . TT . . . . . . . . AC A . C AT . . . T . A . . . . . . . . . . . . A . . G . G A C . . . . . . . A . . . G . . T G AA TA . . . G AG . A C TA G AT TA . . T . C . . T . . TATAAGATAG . . . . . . . . . . T . TT . . . . AA T . . . . . . . . C . A . . . . . G CA . . T . . G . . . A . G C . T . . . . C . ACA TGTA G TG CGACTATACTGA . . AA . . CT G . C ACATACCAATTT A T C A G T . AACAGATCAACACCATA A A . G CC A A TTA . . . . . . GGA . T TC T A A A A T . G A . T . AGATGAT T A . . TT T A . TG A TAAAT . TCGT T . . . GT AT A . . . . . . .
blockSeqs : . . . . . . C TG G . . . . . A . . C AT . . A . . . . . . C . TT . . . . . . . . A A . C G . . . . . . . C T . . . . . . A . . C . AT T . . . . T . T T TG T AT . . . T . . . . GTTAATATA . . . . . . . . . . T . . . . . . . . . . . . T . TT CAAAAG . . TT . . CT . . . ACAAATGAC . A . A G T . GACGACAACG A C . G CT A G TCC . . . . . . GCA . T T T A T A A T . C T . A . GATATA C T . . TT C A . TG A TAAAT . TCTT T . . . GA AT A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . C . . . G . . . . . . . . . . . . . . . A . . . . . . . A . . . G . . . C . . . . . . . AATT . . . A . T . GT T A . . T . G TTA . . . . . . GGA . T T G A A . C A . A G . A . AGATAA T T . . T . A . TA A TAAA . TTGT . . . . AT A . . . . . . . .
blockSeqs : . . . . . . . . . . G . . . . T . . . C . G TCC . . . . . . GAA . C T A C A . C C . T A . A . TGATAA . . . . . . . . G T TAAA . TTGT . . . . G . . . . . . . .
blockSeqs : . . . G . G T T A . . A C . . . . . . . . . . . .
blockSeqCons : ******** TGA** ***** ** A* C** AT ** TT**** *** ** *** ** AA***** **** TG******** T** GNTANTATAG*********** **** ** **** TT** ** T* ATAT* TN ACTNAAAATGG********* TA** CT** C* ACATANCGATTT************ A* T***** GATCGGATCAACACTA************ ** TCN*** T** T* A** A*** GATAA****** T* A*** TGG TAAAT******** T* GT********
originalCons : NTCTGAGATTCGTTG-A----A-TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAAT--AT-ANA---ATA-G-----AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATTT--AC-TCAAAA----CTGG-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTTC--AAAGTTTGGGACCGAATTGAA---T--GT-CGA-------A--CGG-ATCGACNACG-TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTT-TCCGTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT-TGAAC-TCGGTT-A-TGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTTCNG---AT-ATAATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACC----T-AA---A-T-ATCT-------------TTN-T--------GGA-TTAT-A-CCGCCAGC-AATC-GT-------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
finalCons : NTCTGAGATTCGTTG--------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGA--ATGGCCAGTTCCGAATC-ACTT-----TGAA-ATT--ATTAGTT-TAAAAA-TACTTAATTATTGAAA-TGATTTCTC-CTTAC--AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTTTT----ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATATG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TAT--CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATT-T-TT-TAAA--AAATGNTANTATAG-----------AAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGTT--TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAAT-AGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACGT-CAAAA-AATATAT-AAGATNTACTNAAAATGG---------TGTCTGATTTCGTTTTTATT-TCTA--CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAAC-ATACAGACATANCGATTT------------AAAGTTTGGGACCGA-TTGAAT-----GT-CGGATCGGATCAACACTA------------CAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTCTCN---GTGA-TTCGGA-ACT--G-G------C-AGTGTGATTC---------GGA---AC-TGACCT-AT--GAACT-CGGTTA--TGGAAAAATGCA---AAGACC----GGTNATAT-TTACAACGAT-TTTCGATAA------ATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CACA---AG-AAGATTGGAAACCTAAAT--------T-ATCT-------------TTN-T--------GGAT-TAT-A-CCGCCAGC-AATCGT--------TAATTAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA
Alignments
lowQualScore : 444444 555555 11111 11 11 22 11 111111 222 2 11111 111 2222 1 111 11 1 1 1 11 1 2222 22222 2222222 111 111 1 11 111 2222 1 1 2222222 2222 111 111 222222222 1111 111 111 111 11 1 1 111111111 22222222222 1111 11 111 1111 11 222222 2222 1111 333333333 1 555555555555 11 1 222 11 1 1 1 1 222222 1 111111111 111 1 11 1 1 111 11 111 11 11 1 1 11 11 1111 11111 444444444444444444444 2 2222 11 444444444444444444444444 11 111111 666666666666666666666666666666 11 111 222222222 222222222222222 11111 1 1 1111 1111 2 111 1111 11 3333333333333333333333333 11 22222222222222222
lowQualScore : 0 6 888888 6 6 6 6 333333 66666 6 6 0 5 77 5 44 5 5 888 0 0 33 5 5 55 5 5 5 5 55 3 1 6 555555 222 0 6 6 66666 6 6 6 66 1 6 1 111 3 0 2 1111 1 0 1 777 22 0 0 0 8 11 8 0 2 1111 55555 1111111 8 444 3 0 0 444 1 1 33 8 0 5 777 1111 0 3 0 1 99 99 99 1 6 8 3 3 1111111 999 8888 8 111 6 999 6 3 1 777777777 2 2222 111 8 8 000 0 8 999 33 0 0 999999999 44444444444 8 0 0 7777 8 8 11 444 8 7777 11 333333 5555 1 8 2222 8 8 222222222 0 0 333333333333 3 6 9 3 2 11 3 0 8 000 2 33 3 0 3 0 0 0 2 444444 0 0 6 888888888 666 0 1 33 0 0 0 111 33 1 777 33 33 0 0 3 99 3 33 1111 44444 5 000000000000000000000 0 0 0 8 8888 6 6 5555 2 99 55 111111111111111111111111 1 00 6 1 111111 555555555555555555555555555555 00 1 77 4 88 1 000 1 5 5 222222222 5 000000000000000 5 44444 5 55 0 2 3 1111 2 0000 5 1 5 3 0 5 55 0 333 2 5 3 5 66 77 88 0000 5 66 1 999 5 3333333333333333333333333 22 5 0 5 55555555555555555 5 5 5 5 5 5 99
lowQualScore : . . ...... . . . . ...... ..... . . . . .. . .. . . ... . . .. . . .. . . . . .. . . . ...... ... . . . ..... . . . .. . . . ... . . . .... . . . ... .. . . . . .. . . . .... ..... ....... . ... . . . ... . . .. . . . ... .... . . . . .. .. .. . . . . . ....... ... .... . ... . ... . . . ......... . .... ... . . ... . . ... .. . . ......... ........... . . . .... . . .. ... . .... .. ...... .... . . .... . . ......... . . ............ . . . . . .. . . . ... . .. . . . . . . . ...... . . . ......... ... . . .. . . . ... .. . ... .. .. . . . .. . .. .... ..... . ..................... . . . . .... . . .... . .. .. ........................ . .. . . ...... .............................. .. . .. . .. . ... . . . ......... . ............... . ..... . .. . . . .... . .... . . . . . . .. . ... . . . . .. .. .. .... . .. . ... . ......................... .. . . . ................. . . . . . . ..
lowQualScore : 6 4 000000 7 7 7 7 555555 77777 7 7 6 7 99 7 11 7 7 666 7 1 33 7 7 11 7 7 7 7 88 2 0 7 000000 000 0 7 7 77777 7 7 7 77 7 7 0 555 2 2 5 2222 0 0 2 000 55 0 0 0 0 00 0 0 5 2222 00000 0000000 0 000 8 8 8 000 4 0 00 0 8 0 555 2222 0 2 0 2 22 22 22 7 7 0 8 2 8888888 888 0000 0 777 7 777 7 5 7 888888888 5 1111 888 0 0 000 8 0 666 88 0 0 666666666 44444444444 2 8 8 0000 0 0 00 000 0 0000 00 000000 0000 4 0 6666 0 0 000000000 8 0 222222222222 2 5 2 2 5 00 2 8 0 000 0 88 2 0 2 0 0 0 0 555555 2 0 5 222222222 222 0 0 88 2 0 0 000 88 2 000 88 22 0 0 2 00 2 66 2222 00000 0 222222222222222222222 8 0 6 0 4444 7 7 2222 5 22 88 000000000000000000000000 0 33 7 0 888888 555555555555555555555555555555 77 3 99 3 00 4 000 0 7 7 999999999 0 444444444444444 0 88888 0 22 0 6 2 9999 2 6666 9 0 0 4 2 0 11 0 444 2 0 8 0 99 00 77 1111 7 44 7 666 7 9999999999999999999999999 99 7 4 7 99999999999999999 7 7 7 7 7 7 22
consensus : NTCTGAGATTCGTTGA-A---TACAG-T-C-GTTTGC-CCAGTTCCGGATCATG------GCCAGTTCCGAA-----TC-ACTT-TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATACG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATTT-TTT----AAA--AAAT--GATAG---NATAGAAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAA-TAGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATNT--AC-TCA-AACTG---G-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAC----C----GATTT---AAAGTTTGGGACC-GA-TTGAA---T--GTC------GGA-TCGG-ATCAA-CA-C--TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTC---TCCGTGA-TTCGGA-ACT--G------GC-AGTGTGATTC---------GGA---AC-TGACC-T---A-TGAAC-TCGGTT-ATGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTT-C-GATA-A-ATCAATT-TATTTTTCANTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACCTAAAT--TA-TCT-------------TCGT--------GGA-TTATA-CCGCCAGC-AATC-GT-------TAAT-TAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
Reference ( family-2613 ) : NTCTGAGATTCGTTG------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGA--ATGGCCAGTTCCGAA-----TC-ACTT-TGAA-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGAGGGA-T-A-C-AAA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AANG-TATAAA--TCAC-ATTATTTGCAC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-A-----TATTT-CTTCAAT---GGATGTATTAT---TGTAGTCGAGATGNCTTACG-AAA-GAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGT-CAAACTGCT-GTCATTCGCGTC--ATG--TTGAA--CTTAGTTTT-AAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGAAATAT-GATAAGCATATG--------TTTTTTGTTTGGT-ATAGAA-CAAAG-AC-TA-T-CGTTTTCTCAA-GATTACGCCCCCCCCCCCCCCCCCC--CGCGGTGAAATAC-ATTT-TTT----AAA--AAAT--GNTAN---TATAGAAGTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTG----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A-CCTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCGCCAACACCATACGAAAACGGCGAGGAA-TTGTTATC-CATTGCG--GAT-ATAATG-ATA-TAT-CGT-A-AG-AGACT-CAGAGAAAATGAATTATCAATGTTAAAA-TAGG-ANAA--TTTTGA-ATGC-CGC-A-ATTT--GGATA-A-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTC--ATATAACG-TCAAAA-AAT-ATATAAGATNT--AC-TNA-AAATG---G-TGTCTGATTTCGTTTTTATT-TC-TA-CAGAAACT-AGGTAT-ATCCT--AAGCGG--AATAAA-CATACAG-ACATAN----C----GATTT---AAAGTTTGGGACC-GA-TTGAA---T--GTC------GGA-TCGG-ATCAA-CA-C--TACAACGTTCGAATCGACCTG--CAGTCCGTTTCAAACGTC---TCNGTGA-TTCGGA-ACT--G------GC-AGTGTGATTC---------GGA---AC-TGACC-T---A-TGAAC-TCGGTT-ATGGAAAAATGC-A--AAGACC----GGTNATAT-TTACAACGAT-TTT-C-GATA-A-ATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTCTCT-CAC---AAG-AAGATTGGAAACCTAAAT--TA-TCT-------------TTNT--------GGA-TTATA-CCGCCAGC-AATC-GT-------TAAT-TAAAAA-TGTG-ATCCGGA-ACTGG-GCC-AAA-GAC--TGTA
gi|1 : ACAGCT-CTGTTTGC-CC-GTTCGTGATCATG--------CAGTTCCGAA-----TCGACTTGTGGA-ATTGAATTAGTT-TAAAA--TACTTA-TTATTGAAAGTGATTTCTCGCTTAGCGAAAGGTGCAT--CATGT-AAAAATGTATT-ACTG-AGGGA-TTA-C-AAAATCTGTTGTAATTTCCATCCATTCCCGGTTTATTACTTGTC-AAACTTCTT---ATATGATATACATGAACG-ACTT-CGAC-----AT-TTG-GTCTATGTTTACGCCCTTGGAAAAAAACATCGCGCTGTA-TATATTATCTGTTTGTCTCTCTTGAAAG-TATATA--TCACGATTATTTGCACTAAATCAT-TA-TTGCATTTGTGAGTTGAGTAAGTCTTGTCAGCA----ATATTAATAAATAAGA-----TATTT-CTTCAACATGGGATGTATTAT---TGCAGTC-AGATGGCTTACG-AAATGAAACGCTACCTCATGGTCC---AATTCCGGATCAG----TCGTGTCCAAACTGCTGGTCATTCGCGTC--ATGTTTTGAA--CTT-GTTTT-AAATTTTAAGGCAACA-TTTGAAATC-A-----TAT-TAAGGTTG--TCTCTTTGGTTTTAT---AGTAG--TGTGAAATATAGATAAGCATAGGCCTACATTTTTTTTGTTTGGT-G-ATAA-CAAAGAAC-TA-TCCGTTTTCTCAAGGATTACACCCCCCCCCCCCCCCCTC--GGCGGTGAAACACAATTA-TTTGTAAAAA--AAATTCGATAG---AGGATAAGTGGACAGTTATTAAATTAT-AGTACAAA---TAGT----TGTA--TTTTGATT------ATCTTCTTGC---GTATGAATATTTCAAAAGGTATACTGTAGTGT-TATCTTAAT-TT---------TATGCCTTTGTT-GTTTGT-G---TA-----AGGG-TATTCCGA-CGAGCTTCGATCCCACTCGGTCGTCAACACCATACGAAAACGGCGAGGAA-TTGTTATCTCATTGTG--G-T-ATAATGTATA-TATCCAT-ACAG-CAGCT-CAGAGAAAATGAATTATCAATGTTAAAA-TAAGTATAATTTTTTAA-ATGC-TGC-ATATTTGAGGATATA-GCCT--AAACGCGAAG--TTG-AATATATTGTTC--ATATTACG-TCAAAG-AAT-ATA-AAGAT-T--AC-TTA-CACTG---GTTGTC-GATTTCGTTTTGATTGTCGTATCAGAAACTGAGGTATGATCTTGAGAGCGA--GATATA-CATACAG-G-ATAT----CTGGTGATTTCCAAAGGTTCGGGACT-GAGTTGAA---TTGGTCGATGGGGGG-GCGG-ATCAT-TATC--T--AACGTTCGAA-CGACCTGCTCTGTTTGTTTCAAACCAT---TCCGTGATTTCGGA-ACT--GT-----GC-AGTGTGAGTC---------TGA---AC-TGACCAA---A-TGAACTTCGGTTAATGG-AAAATGCTAGTAACATC----GGTGATAT-TTAC-ACAATGTTT-C-CATA-T-ATCAATTGTATTTTCCAACAGAGTAA-CTTCTGA--TCCTCT-T-CACTATAAGAAAGAGTGAAA--CTAGATTATA-TCT-------------GTCT--------GAATTTACATCCGTCAGCAAATCGGT-------TAAC-TAAAAATTGTGAATCCGGA-ATCGG-GCCTAAACGAC--
gi|10 : tgGATTTAT---AGAAG--TGTGAAATAT-GATAAACATACA--------TTTTTTGTTTGGT-AT-GAA-CCAAG-AC-TA-T-CGTTTTCTCAA-GATTAC---------CCCTCCCCCT--CGCGGTGAAATAC-ATTT-TTT----TTT--AAAT--TATAA---GATAGA-GTGGACAG----TAAA-TAT-ACT--AAG---TA-T----TGTA--TTTCGATT------TACTTCTTGAATGGTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTTAA-TTTA-----AAGGTTATTCCGATCGAGCTTCGATCCCACCC--TCG-CAACACCATACGAAAACGGCGAGGAA-T
gi|11 : TCGAATTGCCTTG--CA-CCCGTTTCAAACGTC---TTAGTGA-TTCGGA-ACT--G------GC-GGCGTGATTC---------GCA---AC-TGACA-C---A-TGACC-GCGGTT-GTGT-AAAATGT-C--AAGAAC----GATCATGT-TTACAATGAT-TTT-CAGCTA-ATAT-GATA-TATTTTTAATTAGAGTAG-CTTCTGG--TCT--TCT-CAC---GAG-AAGACT-GAAACCCGTTT--TT-TCT-------------TCGT--------GGA-TTATA-CCGTGGGC-AATC-G--------TAGA-TGAAAA-TGTG-AT-CGGATACTGG-GCG-AAA-GAC--TGT
gi|12 : cATTCGTTGATAATATACAG-T-C-ATTTGC-CCAGTTCCGGATCATGA------CCAGTTCCAAATCACTTC-ACTT-TGTA-ATT--ATCAG-T-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAACGTGC--ATCATGTTAAAAATA-ATT-ACT-GAAGGA-C-A-C-AAA---------------TATCCATCCCCGGTTTATTACTTGCT-ACACCT-CT---
gi|12 : tgtac-ACTTGCTAC-----ACCTC---TC-AT-TTA-CGCGCTTGAGGAAAA-T-TCACGCTGG---GGAAAcatttacgcgcttgaggaaaattcacgctggggaaa
gi|13 : tgtacattcgttgataatatacagtcatttgcccagttccggatcatgaccagttccaaatcacttcactttgtaattatcagttaaaaatacttaattattgaaatgatttctccttacaaacgtgcatcatgttaaaaataattactgaaggacacaaatatccatccccggtttattAGAGCCATTGAAA---TACAA-T-C-GTTTGCGCCAGTTCCGGATCA-----ATGGCCAGTTCCGAA-----TC-ACTT-TGAACCTT--ACTAGTT-T-AAA-ATACTTAATCA
gi|14 : aagtcaaccactacatacaattacacaatgcatcctgacataatgatttgtgataaatataattgttcgaagaaaatttgaggtccagtaaatttacacagaccacttgtcctactggccagcaaattttttttttaa------GC-AGTGTGATTTAAATTAATTGGACTGAC-TGACC-T---A-TGTAT-TTGATT-ATGGAAAA-TGC-A--AAGACA----GAT-------------GAT-TT----GATA-----TAATT-TAGTCT----------AA-CTTCTGA--TCTTCTC---AC---AAG-AAGATT-GAAACATAAAT--TATTTT-------------TTGT--------GGATTTTTA-CCGCCAGC-AATC-GT---------GTGTGAAAA-TGTG-ATCCAGA-ACTGG-GCC-GAA-GAC--TGTA
gi|15 : AATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTACAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-C-AAAT-CTGTTGTAATTTCCATCCATCCCCAGTTTATTACTTGTC-AAACTT-------TATAA---ACAT-AACG-ACTT-CCACATCTGATCTTG-GTC-A--TTAATGCACTTGGAAAAAA-CATTGCGCTGGA-TGGAAAA
gi|16 : CAA-----AAT-TCATGTATGGCCTC-TTGAATTTAT---A-TAAAGTGTACATTGT-GA--AGAA-ATG--------TTCCATGTGAGGTTATAGAA---AAG-ATGTAAC-CGTCTTC-AAA-AATTATGACCCCCCCCCCCCC
gi|17 : cGATT-ATTGGC----TGCAG-TTC-ATTTGC-CCAGTTTCAGATCATG------GCCAGATCCGAA-----TC-ACTT-TGTA-ATT--TTTATTTCTAAAATATAC
gi|19 : tATTGAAA-TTATTTCTC-CTTA-C-AAA-GTTCGCATCATAATAAAGATG-ATTAACT-AAGGGA-T-A-C-AA
gi|2 : cTCTGAAATTTGTTG------TACAG-T-C-GTTTGC-CCAGTTCCGGATCATGATCATGGCCAGTTCCGAA-----TC-ACTT-TGAG-ATT--ATTAGTT-TAAAA-ATACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCATATCATGTTAAAAATG-ATT-ACTGGACGGATT-A-C--AA--CTGTTGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAAG--ACATGAACG-ACTT-CGAC-----ATCTTG-GTC-AT-TTAACGCGCTTGGAAAAAA-CAT-GCGCTGGATTGGAAAACGTGCATGTCACT----AATG-TATTAATTTCAC-ATTATTTGCAC-AAATCAT-TATTTGCATTT-TA--TTGA-TAAGTCTT-TCAGCA----ATAT-----AATAA-AATAATTATTT-CTTCAAT---GGATGTATTAT---TGTAGTCAAGATGACTTACGAAAA-GAAACGCTACCTCATGGACC---AATTCCGGATCAGTCGTTCGTGT-CAAACTGCT-GTCATCCGCGTC--ATG--TTGAA--CTTAGTTTTAAAATTTTAA-GCAATATTTTGAAATCAA-----AAT-TAAGGT----TCTC-TTGGATTTAT---AGTAGA-TGTGCAATAT-GATAAGCATATA--------TTTTTTGTTTGGT-ATAGAACCAAAG-AC-TA-T-CGTTTTCTCAA-GATTACACCCCCCCCCCCCCCCCCCCTCGCGGTGAAATAC-ATTTATTT----AAA--AAATG-GATAG---AATAAAAGTGGACAG----TAAA-TAT-ACT--GAA---TA-T----TGTACTTTTCGATT------TACTTTTTC----GTATCAATA-TTCAAAAGGTATACTGTAGT-T-TAT-TTAAT-TT---------TATGCCTTTGTT-GTTTTT-A----A-----AAAGTTATTCTGATCGAGCTTCGAT-CCACTC--TCG-CAACACCATACGAAAACGGCGAGGAA-TTGCTAAC-CATTGTG--GATAATAATG-ATATTAT-CAT-A-AGCAGACTGTAGAGAAAATGAATTATCAATGTTAAAA-TAAG-ATAA--TTTTCACATGCTTGC-A-ATTT--GAATA-A-GCCTAAAAACGCGAAGTTTTGCAA-ATATTGTTCCAATATACTG-TCAAGA-AAT-ATATAAGATTT--ACTTTACAACTG---G-TGTTTGATTTCGTTTTGATT-TC-TA-AAGAAACT-AGGTAT-ATCTG--AAGCAG--AATAAACCATACAG-ATATAC----T----GATTTTA-AAAGTTTGGGACTGGA-TTAAA---T--GTT------GGATTCGGTATCAATCA-CGTTACAACGTTCGAATCGACCTG--CGGTTTGTTTC-AACATCTCGTCCGTGA-TTCGGA-ACTC-G------GC-AGTGTGATTC---------G-----AC-TGACC-T---ATTGAAC-TCGGTT-ATGGAAAAATGC-A--AAAATC----GGTGATAT-TTACAACAAT-TTTCC-GATATA-GTCAATT-CATTTTTCAATAGAGTAA-CTTCTGAATTCCTCTCTACAC---AAG-AAAATGGGAAACCTAAA---TA-TCT-------------TCTT--------GGA-TTACA-CCGTCAGC-AATC-GT-------TAAT-TAAAAA-TGTG-ATCCGGA-ACTGGCACC-TAA-GAC--TGTA
gi|20 : t--ATG--TTAAA--CTTAGTTTT-AAATTTTGA-GCAATATTTTAA
gi|3 : gATCT-CA--TTAA-TAGATATT-CCAGCA----ATAT-----ACTAA-A-----TATTT--TCCCAT---GGATGTATTAT---TGCAGATAAGATACCTTACG-AAA-GAAACGTCACCTCATGGTCC---AATTCCGGATCAA----CCATGT-AAAATTTCT-GTCATTCGTGTC--ATG--TTGAA--CTTGGTTTT-AAATTTTGA-GCAATATTTC-AGTTCAT-----AATAAAAGGT----TCTC-TTTGATTTATAAAAGTAGG--GTCAAATAT-GAAAAACACAC---------TTTTTT-----GT-AT-GAA-TAAAC-AC-TA-T-GGTTTTCTCAA-GATTA-----TTAACACCCCCTCCC--CGCGGTAAAATAC-ATTT-TAA----GAA--AAAT--GTTAA---TATA-AAGTGGACAG----TAAA-TGT-ACT--AAG---TA-T----TGCA--TTTCGATTTACATGTACTTCTTG----GTATTAATA-TTTTAAAGATACACTGTAAT-TATAT-TTACTGTG---------TA-GCCTTTGTTGGTTTTT-ATCCTATTTTTCAAGTTATTC----CGAGC----ACCACACCC--TCACCAACACCATACG-AAACGACGAGGAA-TTGTTA---CACTGTGTAGAT-ATAATA-TTA-TAT-CATAA-AA-AGACT-CAAAAAAAA--AAT----AATTTTAA----AGG-AGAA--TTTTGA-ATGC-CGCAA-ATTT--GGTTA-C-GCCT--AAACGCGAAG-TTTG-AA-ATATTGTTCA-ATATAACGTTCA--------ATATAACATGTCGAC-T-A-TACTG---A-TGTCTAACTT-GTTTTTATT-TT-TA-CAAAAACA-AGATAT-CTTCT--AAGCGGGCAAAAAACCATATAG-ACATAC----C----AATTT---AAAGTTTGGGGCC-GA-CTGAA---T--GTC------GAA-TCGG-ATCAC-TA-TG-TACAACGTTCGAAACGACCTG--CAGT-TGTTTTAAACATC---TCCGTGA-TTCGGA-AGT--G------GC-AGTGTAATTT---------GGA---AC-TTACC-T---A-TCAAC-TTGTTT-ATGGAAAGAGCC-A--ATGATC----GGTGATAT-TTACTACAAT-TTT-CAGATA-A-ATCAATT-TATTTTTCATTAGAGTAA-CTTCTGA--TCTTC-CT--AC---AAG-AAGATT-AAAACCTAAAA--TG-TCNCACGCCACCTATGTTTTAGTAAAGGGGA---AAA-CCGACAAA-TATC-GA-------CCAT-T-AAAA-TGTG-ATCCGGA-ACTGG-CCT-AAA-GAC--TGTAttcgtattaa
gi|4 : AA-ATT--ATT-GTC-TAAA---TACTTAATTATTGAA--TGATT-ATC-CTTG---AAAGGTGCATAT---ATTAAAATTG-ATT-ACTG-AGGGA-T-AAC-AAA--CTGTTGTAA--TACATACCT-CCCGGTTTATTACTT-TCAAAACTT-TTTTAATATAA---ACAT-AACGAACTT-TGAC-----ATCTTGTGTC-AT-TTACTG-GCTTGGAAAATA-CATCAT-CTGGG--GGAAAATG---ATGTCA-T----AAAGTTATAGA--TCA----TATTTGCAC-AATTCATATA-TTGCATTT-TA--TTGA-AAGGTCTT-TCA-CAGAATATAT-----AATAA-A-----AATTTACTTCAAT---GGGTG-AT--T---TGTAGTCGAGATGACATGC--AAA-GA---GCTA
gi|4 : tgccGCGTCTTATG--TTGAAGCCTTAGTTT---AATTTTAA-GCAATACTCTGAAATCCATTGATAAT-T--GGT----TCTC-TTGGATTTAT---A-T-GA-GGTGAAATAT-GATAATAATTTG--------TTTTTGTTTTGGT-tgtatagcgtcttatgttgaagccttagtttaattttaagcaatactctgaaatccattgataattggttctcttggatttatatgaggtgaaatatgataataatttgtttttgttttggt
gi|5 : tgccaaattattgtctaaatacttaattattgaatgattatccttgaaaggtgcatatattaaaattgattactgagggataacaaactgttgtaatacatacctcccggtttattactttcaaaacttttttaatataaacataacgaactttgacatcttgtgtcatttactggcttggaaaatacatcatctgggggaaaatgatgtcataaagttatagatcatatttgcacaattcatatattgcattttattgaaaggtctttcacagaatatataataaaaatttacttcaatgggtgatttgtagtcgagatgacatgcaaagagctatgtataCACCC--TGGCCAGCACTACATGAAAATGGAGGGGGAGTTGTTATT-CCTTGCA--AAT-AT-ATA-ATA-AAT-TGT-C-A--ACATT-CAGA-------------TAATGATAACATTAGG-AGAA--TTTTGA-CAGC-CTC-A-ATTT--TGGCA-ATGCCT--GAATGTGAAG-TTTT-GA-ATGTTG------TGTAA-----AACA-AAT----TAA-ATG------TCA-AAA-----G-TGTTTGAATT--TTTCTACT-TC-AA-CAGAAAAA-ATGTTT-ATCATTCAA--GG--GATATA-CATACTG-ACA-AA----T----GA--C---AAATTTTGGTACG-AA-TT--A---T--GTC------GGA--CGA---CAA-CG-------AAGGCTCGAAATGCCTTG--CA-CCCGTTC--AACGTC---TTAGTGA-TTCGGACACTTGG------GCGAGCGTGATTC---------GCA---ACATGACA-C---A-TGACC-GCGGTT-CGTGTAAAATGT-C--AAGAAC----GATCATTTGTTACAATGAT-TTT-C--------ACTAATA-TATTATTTAATAGAGTAAGCTTCTGG--TCTT
gi|6 : -----TATTT-CTTCAGT---GA--GTATTATCGTTGTGGTCCAGATGTCTTACC-AAA-GAAA---TACCTTCTGCTGCTTGGGTTCCGGAACAG----TCGTGT-C-AACTGCC-GTAACACATGTC--ATG--CTGAA--CTTAATTTT-AAAgc
gi|6 : TT----AAAGGAAAT--ATTGTATTTACAGAAGTAG-TGT----TAGA-TATGATT--AAGAAATA-TACGATGTA--TCTAGATT------TACTTCTTG----AAATTAATA-TTCAAAAGGTATGCTGTAA----TAT-TTAAT-TTCAACTTTCATATGCCTTTATatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgtattaaaggaaatattgtatttacagaagtagtgttagatatgattaagaaatatacgatgtatctagatttacttcttgaaattaatattcaaaaggtatgctgtaatatttaatttcaactttcatatgcctttatgatt
gi|7 : tatttcttcagtgagtattatcgttgtggtccagatgtcttaccaaagaaataccttctgctgcttgggttccggaacagtcgtgtcaactgccgtaacacatgtcatgctgaacttaattttaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatatttcagttcataccgta--ATATAACG--CAAAACAATTGTA-AAGATTA--AT-TCA-AAAAGTACG-TGTCTGATTT-GTTTTTATT-TC-TT-CAGAAGCT-AGGTAT-TTCCT--AAGCGA--AATAAA-------G-A---------------ATT-------GTTTG-------A-TTGAAGTTT--GTT------CGA-ACAG-ATCAA-CA-CCATATATTGT--GAATAGACCCA--CAGTC-GTTTCAAACGTC---TTTTTGA-TTGGGA-ACT--G------GC-AGTGCTAATC---------GGA---AC-TGATT-TTATA-TAAAC-ACGATC-ACGGAAAA-TAC-C--GAGACCATATGGCAATGT-TTACAAGGAT-TTG-CTGATA-A-ATCAATT-TATTTTTCATTAGAGAAA-CATCTGA--TC--CTCT-TAC-------AAAAT--GAAACCTAAAT--TA-TCT-------------TTGT--------AGA-TTATA-CCACTAGC-AATC-ACTTGCATGTAAT-T-AATA-TGTG-ATCTGGA-ACTGG-GCT-AAA-Ggatt
gi|8 : GAAACT-AGGCAT-ATC--------GG--AATAA----TATAGCACATATATTGT----GATTT---CAAGTTTGGAACC-GA-TTGAA---T--GTC------AG--T------------------CAACGTTCAAAT----CTG--CAGTCT-TTTCAAATGAC---TCCGTGA-TTCGCA-ACT--GGTGGCAGC-AGTGTGATTC---------GAA---AC-TGACC-G---A-TGAGC-TTGGTTAATGG-AAAACGC-A--AAGACC----GATTATAT-GTATAACGAT-TTT-CAGATG-A-TTTCATT-TCTTTTTCATTAGAATAA-CTTCTGA-------TCT-CAT---AAG-AAGATTGG--TCCTAAAT--TA-TCT-------------TTGT--------GG----ATA-CCCCCAGC-GATC-AT-------TAA--TAAAAA-TGTG-CTTCGGA-ACTGT-GCC-AAA-CACGGTGTAccg
gi|9 : tttttttttttacaaatcgctcggactaaatTGAGAGTTACAG------TACAG-T-C-GTTTGC-CTAGTTCCGGATCATG------GCCAGTTCCGAA-----TC-ACTT-TGAA-ATT--ATTAGTT-TAAAA--TACTTAATTATTGAAA-TGATTTCTC-CTTA-C-AAAGGTGCAT--CATGTTAAAAATG-ATT-ACT-GAGGGA-T-A-CAAAA--CTGTCGTAATTTCCATCCATCCCCGGTTTATTACTTGTC-AAACTT-TT---ATATAA---ACAT-AACG-ACTT-CGAT-----ATCTTG-GTC-AT-TT-ACGCGCTTGG-AAAAA-CATCGCGCTGGA-TGGAAAACGTGCATGTCACT----AATG-TATAAA---CAC-ATTATTTGCTC-AAATCAT-TA-TTGCATTT-TA--TTGA-TAAGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACAATGTTCATAGCACCACCTAATAGTATGCTTTAAGAAAGGGGAAAAATCCAACAAATTCCGACCATTAA