lowQualScore : 11111111111111111111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 11 1 22222222 00000000000000000000000000000000000000000000 2222222222 111 3333333333333333333 444444444444444444444444444444 11111 66666666666 111111 11 222 111111 11 1 77777777777777777777777777777 333333333333333333333333333333333333333 1111 22 1111111111 333
lowQualScore : 1 2 55 4 4 2 1 8888 66 0 777 22222222 3 4 33333333333333333333333333333333333333333333 1 4 7777 7777777777 777 111 1111111111111111111 4 4 888888888888888888888888888888 4 11111 88888888888 3 55 000000 3 33 555 3 55 777 111111 55 4 11 55 3 4 88888888888888888888888888888 8888 5 8 55 000000000000000000000000000000000000000 4 33 1 7777 3 3 9 1111 444 11 3 3333333333 3 44 1 2 5 44 4 5 000 1
lowQualScore : . . .. . . . . .... .. . ... ........ . . ............................................ . . .... .......... ... ... ................... . . .............................. . ..... ........... . .. ...... . .. ... . .. ... ...... .. . .. .. . . ............................. .... . . .. ....................................... . .. . .... . . . .... ... .. . .......... . .. . . . .. . . ... .
lowQualScore : 2 0 77 7 3 8 9 4444 44 8 000 33333333 2 0 00000000000000000000000000000000000000000000 0 0 8888 2222222222 000 000 0000000000000000000 4 0 000000000000000000000000000000 4 11111 99999999999 6 00 555555 6 44 777 6 99 000 555555 55 0 55 55 6 0 44444444444444444444444444444 5555 5 0 55 666666666666666666666666666666666666666 9 99 0 1111 3 3 6 6666 999 22 3 5555555555 1 22 4 0 0 66 1 7 000 0
consensus : GCTGCACTGAATAGTGGTGTCCAGCAGA--GCGNGCGCTCCCTTTTTGCGTTATAAAA---GAGTATATGTA---ATCTGGC-----AACCGCTC-GCG-TGCG-C---NGGCTCTGCTNAATA--T---TACAGCAGA-AATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATT-GAAAC--------C--------TA-T------TGTG-TACTTT-----TAGGGGGGGAA-AAT-C--A------GTAGA-CNNGTATGTTATATTT-TACTTTT-A---TGTA------TT--ATTTCTA-TTTAAAATAA--ACCGTGTTGTTTTTA----------T---------------ATGAGAACATA----TACCGTG-AAAT--A----------G------------TTTCTG-TCTATTTGCCCATAGTGAATGT-CTTCGAAACTG----AAC-GCCC-TTGATTG--GTAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA-T-CTTTTCTTTTTTAAT
Reference ( gi|3 ) : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCCCTTTCTGTGTTATAAAG---GAGTACATGTA---ATCTGGC-----AACCGCTC-GCG-TGCA-C---AGGCTCTGCTTAATA--TC-TTATAGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATT-GAAAC--------C--------TA-T------TCTG-TACTTT-----TAGGGGGGGGGGGAT-C--A------GTAGA-CTCGTATGGCGTATTT-TACTTTT-A---TGTA------TT--ATTTCTA-TCCAAAATAA--ACCGTATTGTTTTTA----------TCA-------------ATGAGAACATA----TATCGTG-AAAT--A----------G------------TT------------GACCATAGTGAATGT-CTTCGAAACTG----AAC-GCCC-TTGACTG--TTAAATT-A-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCA-G-CTTTTCTTTTTTAAT
gi|2 : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCC-TTTCTGTGTTA-AAAG---GAGTACATGTA---ATCTGGC-----AACCGCTC-GCGATGCA-C---AGGCTCTGCTTAATA--TTATTATAGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATTTGAAAC--------C--------TAAT------TCTG-TACTTT-----TAGGGGGGGG---AT-C--A------GTAGA-CTCGTATGGCGTATT---ACTTTT-A---TGTA------TT--ATTTCTA-TCCAAAATAA--ACCGTATTGTTTTTA----------TCA-------------ATGAGAACATA----TATCGTG-AAAT--A----------GT-----------TT------------GACCATAGTGAATGT-CTTCGAAACTG----AAC-GCCC-TTGACTG--TTAAATTAA-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAGTATATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCACGCCTTTTCTTTTTTAAT
gi|1 : TGCACTGAATTGTGGTGTTCAGCAGA--GCGGGTTCTCCCTTTTTGTGTTATAAAA---GAATATATGTA---ATATA----------------GCG-TGCG-C---TCGCTTTGCTAAAGAACTT-TTATAGCAGGAAATTATGTAGAGAAA-CC----AA---------AGAAAT---GT---CC-------------------T---AT-----AC--------G--------TG-T------TGTA-TACTTG-----TA----GGGAATAAT-C--A------GTAGA-CGGCTATGTTATATTT-TACTTTT-AATTTATG------TTCCATTTCTA-TTTGAAACAA--GCCGTGTT-TTTTT------------------------------AGAGCATA----TACTGTA-AAAT--A----------G------------TTTCTATTCTATTAGCCCATAGTGAATAT-CTTCGAAATTG----AAC-GCCC-TTGATTG--GTAAATT-A-TATACAATTTATTTTC-TACA----------AAAGA-TGCAGGGTAG--TACTTTTTGTAATCAGGGTGCGTTTATTGT-TGAAATCTGACTGCG-T-CTTTTCTCGTTTAAT
gi|4 : atcctccacctttaggtactCACTGAATGGAAGTGTTCAGCAGA--GCTGGCTCTCGCTTTTTGGGTTATAAAGAACGGGTATATGCA---ATAGTGC-----GACCACTT-GCG-TGCG-C---TTGCTCTGTTGAATAAGCC-CTACTG-------TTATGTAGACAAA-CTA---AAGA-------AGGA------T---CA-------------------TG-TATT-GAAACTGTACTTTC--------TA-TACT---TTTGATACTTT-----TAGGGAAA-----AT-C--A------GTATA-CT-GTATGTTATATTT-TATTTCT-A---TGTA------TT--ATTTTTACTTAAAAATATCTATTATGTTGTTATTT----------TAA-------------ATGGAAACATT----TCT-GTG-AAAT--ATTTCTGTTCTA------------TT------------TGCCTTAGTGAATGGACTTCGAAACTG----A---GTCC-TTGA-TGGTTTAATTT-A-TTTACAGTT--TTTTGTTAAC----------AAAGATTGCAGAG--A--TCTTTTTTGTATTCAttg
gi|14 : gtgttctcctccccctttaggtacatgcagcaaCACTGAATAGTGGTGTC---------------GCTCCCTTTTTGTGTTATAAAA---GAGT--ATGTA---ATCTGGC-----AACCGCTT-GAG------C---AG---------AAAA-----TTAT-------------GTAGACAAACCCAATCAA---------AGGAAT---GC---CA-------------------TG-CAAT-GAAAC--------A--------TA-T------
gi|6 : tgtgtcctcctccacctttaggtacttgcagcacGTCCAGCAGATCGCGTGCGCTTGCTTTGTGCATTGTAAAG---AAAGAC-TG-------CT-----------CGCTCTGCG-T-TA-G---AGGC----CTCATTG--T---TACAGCAGATAATAACGTAGACAAA-GCA---AA------------TAT---GT---CAATCATATTAATAAATAAATTG-AGTT-GAAAT--------T--------TA-T------AC-G-TACTGTGTGAATTGTAGACAAAAAATTC--A------GTCGA-CATATATGTTATATTT-TACTTTT-A---TGTA------TT--ATTTCTA-TTT-AAATAA--ACCGTAacgtattgtgtac
gi|12 : tGTTCAGCAGA--GCGGGGGCGTCCTTT-TGTGTTATAAAA---GAGTATATGTATCTAGCTGGC-----AA---ATC-G----GCATC-----GCTCTGCTAAAGA--------------ACACTTGTGTAGACAAA-CC-----A---------AGTAAT---GTC--CA-------------------TGCCATT-GAAAC--------CTAAATACGTA-T------TGTG-TACTTT-----TA--GGGAAAAAAAT-C--G------GTAG--CGTGTATG-----TTTATATTTTT-agaaaatttactttgagtttgtttctgttttatttgcccaatgtgaatgtcctatacaatattttttgcagcaaagatacagggtagtactttttgca
gi|8 : tgtgtcccctccctataggtacttgcagcatcaaGTCCAGCAGATCGCGTGCGCTTGCTTT-TGCATTG-AAAA---AAG------------------------ACTGCTC-GCTCTGCA-TTAGAGAC----CTCATTG--T---TACAGCAGATAAAAACGTAGACAAA-GCA---AA-----------GTAT---GT---CA-------------------
gi|20 : tCTTCCTTTTTGTGTTATAAAA---GGGTTTATGTA---ATCTAGCTGGCAAATCGCTC-GCatcactagttaataaataaattgagttaaattaacgactgtgtgaattgggtagacaaaaattcagtcgaacatatatgttatatttaactttatgtattatttctatttaacataaaccgtaagaaaatttactttgagtttgtttctgttttattgcccgaatgtgaatttcctaacaatatttttgcagcaaagatacagggtatactt
gi|5 : CCTTTTTGTGTTATAAAA---GAGTATATGTA---ATCTAGCTGGCAAATCGCTC-GC---------------TCTGCT-AA--------------AGAACATTATGTAGACAAA-CCA---AA----------GGAAT---GT---CA-------------------TG-CACT-GAAAC--------C--------TA-TACGTATTGTG-TACTTT-----TAGGGAACAAA--AT-C--G------GTAGA-CTGGTATGTTATATTT-TACTTT--------------------ATTT-------AAAATAA--ACCAT---GTTTTTA----------T-----------------GAGAAGATT----TACTGTG-AAAT--A----------G------------TTTCTGTTCTATTTGCCCATAGTGAATGT-CTTCGAAACTG----AAC--CCC-TTGATTG--GTAAAAT-A-TA--TAATTTATTTTG-TAGA----------AGAGA-TGTAGGGCAG--TGTTTCTTGTATTCAGGGTGCGTTTATTGA-TGAAA
gi|13 : tcgctcgctctnggcgtA---ATCTGGC-----AACCGCTC-GCG-TGCG-T---TTACTCTGCTTAATA--------------------ACGTAGACAAA--CA---AA---------AGGAAT---CT---CA-------------------TG-CATT-GAAAC--------CTACACG--TA-T------TGGG-TACTTT-----TA---TGGGGGAAAT-TTGA------ATAAA-CTGGTATGTTATATTT-CACTTTT-A---TGTA------AT--ATTTC
gi|7 : taaagaatcggtatgccTTACGTAGATAAA-CCA---AACAATAATAAATGAATTGAGTTGACA-------------------TT-TATA-GATAC--------G--------TA-T------TGTG-TATTTT-----TAGTAA-------AT-A--AAATTTTGTAGA-CATACATGTTATATTT-TACTTTT-A---TGTACTAGTATT--ATTTCTA-TTTAAAATAT--ACCATGCT--TTTCG----------T---------------ATGAGAACA-A----CTTC-TGTAAATCAA----------A------------TT---------------C--------TGC-CTTCGAAACTG----AAC-GCCC-TTGATTG--GTAAATC-A-TATACAATTTATTTTG-TAGCAACGACACTGAAAGA-TGCAGGGTAG--TACTGTTTGTATTCAGGGTGCGTTTATTGG-TGAAA-CTGGCTGCA-----TTTTTTTTTTA
gi|9 : ttgTT-GAAAT--------T--------TA-T------A-----ATTTT-----TAAGGAAAAAA--AT-C--A------TTAGG-CTTAAATGTTATATTT-TACTTTTTA---TGTA------TA--ATTTGTA-TTTAAAATAA--ACCGTGTTCTTTGTA--------------------------A-GAGAACATT----TACTGTG-AATT--A----------G------------TTTCTGTCCTGTTTGCCCATAGTGAATGT-CTTCGAAAATG----AAG-ACCC-GTGATTG--GTAAATT-A-TATACAATTTATTTTG-TAGC----------AAGGA-TGCAGCGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGG-TGAAACCTGTCTGCA-T-CTTTTCTttt
gi|10 : taatgcataaattgagAT-C--A------GTAGA-CTGGTATGTTATATTG-TACCTTA-A---TTTA------TT--ATTTCTA-TTTAGATTAA---CCATGTTTTTTTTATGTTTTTTATTTATTTCTTTTGTTTTATGAGAACATACATGTATACTGTAAAT--A----------GATTCTGATCTATTT------------GCCTATAGTGAATGC-CTTCGAAATTG----AAC-GCCC-TTGATCG--GTAAATT-A-AATACAATTTATTTTG-TAGA----------AAAGA-TGCAGGGTAG--TACTTTTT---------GTACGTTTATTGA-TGAAATCTGACTGCA-T-CTTTTCTaacttgat
gi|8 : aaT-C--A------GTCGAACATATATGTTATATTT-AACTTT--A---TGTA------TT--ATTTCTA-TTTAACATAA--ACCGTA
gi|15 : tgtccagcagatcgcgtgcgcttgcttttgcattgaaaaaagactgctcgctctgcattagagacctcattgttacagcagataaaaacgtagacaaagcaaagtatgtcaatcactagttaataaataaattgagttaaattaacgactgtgtgaattgggtagacaaaaatTCTA-TTTAATATAA--ACCGTGTT--TTTTA----------T-----------------GAGAACATA----CACTGTG-AAAT--A----------G------------TTTCTACTCTATTTGCCCATAGTGAAT-----TCA----TG------C-GTTC-T----------AAACT------GC----TATTTCA-TAGC----------AAAGA-TGCAGGGTAG--TACTTCTTATATTCAGGGTAAGTTGATagaaaatttactttgagtttgtttctgttttattgcccgaatgtgaatttcctaacaatatttttgcagcaaagatacagggtatactt
gi|8 : GTATTATTTCTA----------TT---------------T---AACATA----AACCGTA-AGAA--A----------A------------TT------------TACT-T--TGAGTTT-GTTT----CTGTTTTATT-GCCC---GAATG--TGAATTT-C-CTAACAATAT-TTTTG-CAGC----------AAAGA-TACAGGGTA---TACTT
gi|16 : tgtccagcagatcgcgtgcgcttgcttttgcattgaaaaaagactgctcgctctgcattagagacctcattgttacagcagataaaaacgtagacaaagcaaagtatgtcaatcactagttaataaataaattgagttaaattaacgactgtgtgaattgggtagacaaaaattcagtcgaacatatatgttatatttaactttatATA----TACTGTG-AAAT--A----------G------------TTTCTGCTTTAATTGCCCGTA-TGAATGT-CTTCGAAA-TG----AACGGCCC-TTG
gi|17 : AGTGAATGG-CTTCGAAACTG----AAC-GCCC-TTG
gi|11 : tactgtgaaataatttctgttctatttgctctcAACTT----AAC-GCCCGTTGATTG--T---ATT-ACTATACAATTTAATTTG-C-GT----------TATGT-TGCAGGCGAG--CATCTTTTGTATACGGGGTGCGTTTATTGATTGAAAGCTTACTTCA-----TTTATTATTTA
gi|6 : ttcaataaatcataattattgcataaatagtgtatttatgctatcagtagttccaaaagtttatatataactgctgaataactgctttattgacctgtcatgtT-A-TA--CAATATTTTTTG-CAGC----------AAAGA-TACAGGGTAG--TACTTTTTttt
gi|18 : tgtccagcagatcgcgtgcgcttgctttgtgcattgtaaagaaagactgctcgctctgcgttagaggcctcattgttacagcagataataacgtagacaaagcaaatatgtcaatcatattaataaataaattgagttgaaatttatacgtactgtgtgaattgtagacaaaaaattcagtcgacatatatgttatattttacttttatgtattatttctatttaaataaaccgtaagaaaatttactttgagtttgtttctgttttatttgcccaatgtgaatgtccTTTTG-TAGC----------GAAGA-TGCAAGGTAG--TACTTTTTGTATTCAGGGTACGTTTATTGA-Tgca
gi|21 : AAC----------AAAGA-TGCAGGGTAA--TACTTTTCATATTCAGAGCAg
gi|19 : cTATTCAGGGTGCGTTTATTGT-TGAAACATGACTGCT-T-CTTCTCTTTTTTAAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TACGAANNNNNNNNNNNNNNNNNNNNNNNNNGA
Unaligned ( gi|23 ): GGTACTTGCAGTGCTCCTAATTTTATAACTTG
Alignments
lowQualScore : 11 1111 11111 6666666666666666666666666666666666666666666666666666 2222222222 111 555555555555555555555555555555555555555555555555555555555555555 1111 111111 777777777777777777777777777777777777 1111111 11111 1111111111 1
lowQualScore : 33 2 2 0 3 0 3 666 0000 3 666 1 88888 9999999999999999999999999999999999999999999999999999 3 666 1111111111 666 000 888888888888888888888888888888888888888888888888888888888888888 3 77 2 9999 777777 3 3 55 3 55 666 000000 55 3 55 444444444444444444444444444444444444 4444444 6 88888 3 1 55 3 2 2 1 3 999 3 3 3 2222222222 2 33 4 3 66 3
lowQualScore : .. . . . . . . ... .... . ... . ..... .................................................... . ... .......... ... ... ............................................................... . .. . .... ...... . . .. . .. ... ...... .. . .. .................................... ....... . ..... . . .. . . . . . ... . . . .......... . .. . . .. .
lowQualScore : 88 8 2 8 7 8 6 444 6666 6 444 2 22222 4444444444444444444444444444444444444444444444444444 6 444 8888888888 444 000 555555555555555555555555555555555555555555555555555555555555555 3 99 8 6666 111111 3 3 22 3 99 444 555555 00 6 00 777777777777777777777777777777777777 6666666 2 88888 1 7 77 0 9 9 5 6 222 3 3 1 5555555555 9 99 0 9 99 3
consensus : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGCG-TGCGCT---NG---CTCTGCTNAATA----T--TAC---AGCA-G-ATA-ATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATT-GA----AAC--------C--------TA-T------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATA------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
Reference ( family-2562 ) : GCTGCACTGAATAGTGGTGTCCAGCAGA--GCGNGCGCTCCCTTTTTGCGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGCG-TGCGCN---GG---CTCTGCTNAATA----T--TAC---AGCA-G-A-A-ATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATT-GA----AAC--------C--------TA-T------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CNNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATA------TACCGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
gi|1 : TGCACTGAATTGTGGTGTTCAGCAGA--GCGGGTTCTCCCTTTTTGTGTTATAAA-A---GAAT--ATATGT-A---ATATA---------------GCG-TGCGCT---CG---CTTTGCTAAAGAACTTT--TAT---AGCAGG-A-A-ATTATGTAGAGAAA-CC----AA---------AGAAAT---GT---CC-------------------T---AT---------AC--------G--------TG-T------TGTA-T--ACTTGTA----GGGAATA-A--T-CAGTAGA-CGGCTATG-TTATATTTTACTTTT-AATTTATG------TTCCATTTCTATTT-GAAACA--AGCCGTGT--------T-T--TTTT----------------------AGAGCATA------TACTGTAAAATAGTTTCTATT-C-T-ATTAGCCCATAGTGAATAT-CTTCGAAATTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTC-TACA----------AAAGA-TGCAGGGTAG--TACTTTTTGTAATCAGGGTGCGTTTATTGT-TGAAATCTGACTGCG--TCTTTTCTCG-TTTAAT
gi|10 : atcctccacctttaggtactA-A-A--T-CAGTAGA-CTGGTATG-TTATATTGTACCTTA-A---TTTA------TT--ATTTCTATTT-AGATTA--A-CCATGTTTTTTTTATGT--TTTTTATTTATTTCTTTTGTTTTATGAGAACATACATGTATACTGT-AAATAGATTCTGAT-C-T-ATTTGCCTATAGTGAATGC-CTTCGAAATTGAAC-GCCC-TTGATCGG--TAAATT-A-AATACAATTTATTTTG-TAGA----------AAAGA-TGCAGGGTAG--TACTTTTTGTA---------CGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTttg
gi|11 : AACTTAAC-GCCCGTTGATTG---TA--TT-ACTATACAATTTAATTTG-C-GT----------TATGT-TGCAGGCGAG--CATCTTTTGTATACGGGGTGCGTTTATTGATTGAAAGCTTACTTCA--TTTATTATTTATTT
gi|12 : ttcaataaatcataattattgcataaatagtgtatttatgctatcagtagttccaaaagtttatatataactgctgaataactgctttattgacctgtcatgtGTTCAGCAGA--GCGGGGGCGTCCTTTT-GTGTTATAAA-A---GAGT--ATATGT-ATCTAGCTGGC-----AA---ATCG----GCATC----G---CTCTGCTAAAGA--------AC---A-C---------TTGTGTAGACAAA-CC-----A---------AGTAAT---GTC--CA-------------------TGCCATT-GA----AAC--------CTAAATACGTA-T------TGTG-T--ACTTTTA-GGGAAAAA-A-A--T-CGGTAG--CGTGTATGTTTATATTTT
gi|13 : tgtgtcccctccctataggtacttgcagcatcaaAA-A---GAATCGGTATGCCA---ATCTGGC-----AACCGCTCGCG-TGCGTT---TA---CTCTGCTTAATA---------------------------ACGTAGACAAA--CA---AA---------AGGAAT---CT---CA-------------------TG-CATT-GA----AAC--------CTACACG--TA-T------TGGG-T--ACTTTTATGGGGGAAA-T-T--T-GAATAAA-CTGGTATG-TTATATTTCACTTTT-A---TGTA------AT--ATTTCt
gi|14 : tCACTGAATAGTGGTGTC---------------GCTCCCTTTTTGTGTTATAAA-A---GAG----TATGT-A---ATCTGGC-----AACCGCTTG------------------------------------------AGCA-GAA-A-ATTATGTAGACAAACCCAATCAA---------AGGAAT---GC---CA-------------------TG-CAAT-GA----AACATATA---CG-------TA-T------TGTG-T--AC
gi|15 : tgtgtcctcctccacctttaggtacttgcagcacTCTATTT-AATATA--AACCGTGT--------T-----TTT------T------------ATGAGAACATA------CACTGTGAAATAGTTTCTACT-C-T-ATTTGCCCATAGTGAA-----TTCA----TG--C-GTTC-T----------AAACT-G-C--------TATTTCA-TAGC----------AAAGA-TGCAGGGTAG--TACTTCTTATATTCAGGGTAAGTTGAT
gi|16 : ATA------TACTGTGAAATAGTTTCTGCT-T-T-AATTGCCCGTA-TGAATGT-CTTCGAAA-TGAACGGCCC-TTG
gi|17 : ------TACTGTGAAATAATTTCTG-TTC-T-ATTTGCTCTCAGTGAATGG-CTTCGAAACTGAAC-GCCC-TTG
gi|18 : TTTTG-TAGC----------GAAGA-TGCAAGGTAG--TACTTTTTGTATTCAGGGTACGTTTATTGA-TG
gi|19 : TATTCAGGGTGCGTTTATTGT-TGAAACATGACTGCT--TCTTCTCTTT-TTTAAT
gi|2 : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCC-TTTCTGTGTTA-AAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGCGATGCACA---GG---CTCTGCTTAATA----T--TATTATAGCA-G-ATA-ATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATTTGA----AAC--------C--------TAAT------TCTG-T--ACTTTTAGGGGGGGGA------T-CAGTAGA-CTCGTATG-GCGTATT--ACTTTT-A---TGTA------TT--ATTTCTATCC-AAAATA--AACCGTAT--------TGT--TTTT-----ATCA----------ATGAGAACATA------TATCGTGAAATAGTTT--------------GACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATTAA-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAGTATATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCACGCCTTTTCTTT-TTTAATttg
gi|20 : CTTCCTTTTTGTGTTATAAA-A---GGGT--TTATGT-A---ATCTAGCTGGCAAATCGCTCGC
gi|21 : AAC----------AAAGA-TGCAGGGTAA--TACTTTTCATATTCAGAG
gi|3 : cGCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCCCTTTCTGTGTTATAAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGCG-TGCACA---GG---CTCTGCTTAATA----TCTTAT---AGCA-G-ATA-ATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATT-GA----AAC--------C--------TA-T------TCTG-T--ACTTTTAGGGGGGGGG-GGA--T-CAGTAGA-CTCGTATG-GCGTATTTTACTTTT-A---TGTA------TT--ATTTCTATCC-AAAATA--AACCGTAT--------TGT--TTTT-----ATCA----------ATGAGAACATA------TATCGTGAAATAGTT---------------GACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATT-A-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCA--GCTTTTCTTT-TTTAATca
gi|4 : CACTGAATGGAAGTGTTCAGCAGA--GCTGGCTCTCGCTTTTTGGGTTATAAA-GAACGGGT--ATATGC-A---ATAGTGC-----GACCACTTGCG-TGCGCT---TG---CTCTGTTGAATAAGCCC--TAC---TG----------TTATGTAGACAAA-CTA---AAGA-------AGGA------T---CA-------------------TG-TATT-GA----AACTGTACTTTC--------TA-TACT---TTTGAT--ACTTTTAGGG----AA-A-A--T-CAGTATA-CT-GTATG-TTATATTTTATTTCT-A---TGTA------TT--ATTTTTACTTAAAAATATCTATTATGT--------TGTTATTTT-----AA------------ATGGAAACAT-------TTCTGTGAAATA-TTTCTGTT-C-T-ATTTGCCT-TAGTGAATGGACTTCGAAACTGA---GTCC-TTGA-TGGTTTAATTT-A-TTTACAGTT--TTTTGTTAAC----------AAAGATTGCAGAG--A--TCTTTTTTGTATTCA
gi|5 : gtgttctcctccccctttaggtacatgcagcaaCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTAGCTGGCAAATCGCTCGC-----------------TCTGCTAAA--------------------G-A-ACATTATGTAGACAAA-CCA---AA----------GGAAT---GT---CA-------------------TG-CACT-GA----AAC--------C--------TA-TACGTATTGTG-T--ACTTTTAGGGAAC-AA-A-A--T-CGGTAGA-CTGGTATG-TTATATTTTACTTT--------------------------ATTT-AAAATA--AACCATGT--------T------TT------T------------ATGAGAAGATT------TACTGTGAAATAGTTTCTG-TTC-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC--CCC-TTGATTGG--TAAA---A-TATATAATTTATTTTG-TAGA----------AGAGA-TGTAGGGCAG--TGTTTCTTGTATTCAGGGTGCGTTTATTGA-TGAAA
gi|6 : tcgctcgctctnggcgtTGTCCAGCAGATCGCGTGCGCTTGCTTTGTGCATTGTAAAGA---AAG---------------------------ACTGCTCGCTCTGCGTTAGAGG---C----CTCATTG----T--TAC---AGCA-G-ATA-ATAACGTAGACAAA-GCA---AA---------T---AT---GT---CAATCATATTAATAAATAAATTG-AGTT-GA----AAT--------T--------TA-TACGTACTGTG-TG-AATTGTAGACAA--AA-A-A--TTCAGTCGA-CATATATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAA-TA--AACCGTA----------------------------------------AGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-TTATTTGCCCA------ATGT-----------GAAT-GTCC-T-------------------ATACAATATTTTTTG-CAGC----------AAAGA-TACAGGGTAG--TACTTTTTGCA
gi|7 : TTACGTAGATAAA-CCA---AACAATAATAAATGAATTGAGTTGACA-------------------TT-TATA-GA----TAC--------G--------TA-T------TGTG-T--ATTTTTAGTAAATAAA-A-T--T-TTGTAGA-CATACATG-TTATATTTTACTTTT-A---TGTACTAGTATT--ATTTCTATTT-AAAATA--TACCATGC--------T----TTTC-----GT------------ATGAGAACA---------AC-----------TTCTG-T-A-A-AT-----CAAATTC--TGC-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATC-A-TATACAATTTATTTTG-TAGCAACGACACTGAAAGA-TGCAGGGTAG--TACTGTTTGTATTCAGGGTGCGTTTATTGG-TGAAA-CTGGCTGCA--TTTTTTTTTTATTT
gi|8 : ttgTGTCCAGCAGATCGCGTGCGCTTGCTTTT-GCATTG-AAA-A---AAG---------------------------ACTGCTCGCTCTGCATT---AGAGAC----CTCATTG----T--TAC---AGCA-G-ATA-AAAACGTAGACAAA-GCA---AA-----------GTAT---GT---CAATCACTAGTTAATAAA---TA-AATT-GAGTTAAATTAA-----C--------GA-C------TGTG-TGAA---TTGGGTAGACAA-A-AATT-CAGTCGAACATATATG-TTATATTTAACTTT--A---TGTA------TT--ATTTCTATTT-AACATA--AACCG----------------------------------------TAAGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-T-TATTGCCC-----GAATG-----------TGAAT-TTCC-T-----------AACA-A-TAT--------TTTTG-CAGC----------AAAGA-TACAGGGTA---TACTT
gi|9 : TT-GA----AAT--------T--------TA-T------AAT-------TTTTAAGGAAA-AA-A-A--T-CATTAGG-CTTAAATG-TTATATTTTACTTTTTA---TGTA------TA--ATTTGTATTT-AAAATA--AACCGTGT--------T----CTTT-----GT------------AAGAGAACATT------TACTGTGAATTAGTTTCTG-T-CCT-GTTTGCCCATAGTGAATGT-CTTCGAAAATGAAG-ACCC-GTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAGGA-TGCAGCGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGG-TGAAACCTGTCTGCA--TCTTTTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TACGAANNNNNNNNNNNNNNNNNNNNNNNNNGA
Unaligned ( gi|23 ): GGTACTTGCAGTGCTCCTAATTTTATAACTTG
Alignments
lowQualScore : 11 1111 111111111 1111 111 444444444444444444444 1111 111111111 111 66666666666666666666666666666666666666666666666666666 111111 1111111 111111 777777777777777777777777777777777777 1111111 1 1111111111 1
lowQualScore : 33 3 2 0 0 3 666 0000 3 666 444444444 0 8888 333 444 3 2 0 777777777777777777777 3 0000 999999999 666 000 22222222222222222222222222222222222222222222222222222 3 555555 3 77 6666666 3 3 44 3 3 55 3 3 666 000000 55 3 55 444444444444444444444444444444444444 4444444 8 333 44 3 66 3 2 2 1 3 999 3 3 3 2222222222 2 33 4 3 66 3
lowQualScore : .. . . . . . ... .... . ... ......... . .... ... ... . . . ..................... . .... ......... ... ... ..................................................... . ...... . .. ....... . . .. . . .. . . ... ...... .. . .. .................................... ....... . ... .. . .. . . . . . ... . . . .......... . .. . . .. .
lowQualScore : 88 0 2 8 8 6 444 6666 6 444 111111111 5 6666 333 000 2 4 6 888888888888888888888 6 7777 555555555 444 000 33333333333333333333333333333333333333333333333333333 3 444444 3 99 7777777 3 3 66 3 3 88 3 6 444 555555 00 6 00 777777777777777777777777777777777777 6666666 5 777 77 5 44 0 9 9 5 6 222 3 3 1 5555555555 9 99 0 9 99 3
consensus : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
Reference ( family-2562 ) : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATA------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
gi|1 : TGCACTGAATTGTGGTGTTCAGCAGA--GCGGGTTCTCCCTTTTTGTGTTATAAA-A---GAAT--ATATGT-A---ATATA---------------GC--G-TGCGCTCG---CTTTGCTAAAGAACTTT--TAT---AGCAGGAAATTATGTAGAGAAA-CC----AA---------AGAAAT---GT---CC-------------------T---A-T--------AC--------G--------T-GT------TGTA-T--ACTTGTA----GGGAATA-A--T-CAGTAGA-CGGCTATG-TTATATTTTACTTTT-AATTTATG------TTCCATTTCTATTT-GAAACA--AGCCGTGT--------T-T--TTTT----------------------AGAGCATA------TACTGTAAAATAGTTTCTATT-C-T-ATTAGCCCATAGTGAATAT-CTTCGAAATTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTC-TACA----------AAAGA-TGCAGGGTAG--TACTTTTTGTAATCAGGGTGCGTTTATTGT-TGAAATCTGACTGCG--TCTTTTCTCG-TTTAAT
gi|10 : atcctccacctttaggtactA-A-A--T-CAGTAGA-CTGGTATG-TTATATTGTACCTTA-A---TTTA------TT--ATTTCTATTT-AGATTA--A-CCATGTTTTTTTTATGT--TTTTTATTTATTTCTTTTGTTTTATGAGAACATACATGTATACTGT-AAATAGATTCTGAT-C-T-ATTTGCCTATAGTGAATGC-CTTCGAAATTGAAC-GCCC-TTGATCGG--TAAATT-A-AATACAATTTATTTTG-TAGA----------AAAGA-TGCAGGGTAG--TACTTTTTGTA---------CGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTttg
gi|11 : AACTTAAC-GCCCGTTGATTG---TA--TT-ACTATACAATTTAATTTG-C-GT----------TATGT-TGCAGGCGAG--CATCTTTTGTATACGGGGTGCGTTTATTGATTGAAAGCTTACTTCA--TTTATTATTTATTT
gi|12 : ttcaataaatcataattattgcataaatagtgtatttatgctatcagtagttccaaaagtttatatataactgctgaataactgctttattgacctgtcatgtGTTCAGCAGA--GCGGGGGCGTCCTTTT-GTGTTATAAA-A---GAGT--ATATGT-ATCTAGCTGGC-----AA---ATCG------GCA-TCG---CTCTGCTAAAGA--------AC---A-C------TTGTGTAGACAAA-CC-----A---------AGTAAT---GTC--CA-------------------TGCCA-TTGA----AAC--------CTAAATACGT-AT------TGTG-T--ACTTTTA-GGGAAAAA-A-A--T-CGGTAG--CGTGTATGTTTATATTTT
gi|13 : tgtgtcccctccctataggtacttgcagcatcaaAA-A---GAATCGGTATGCCA---ATCTGGC-----AACCGCTCGC--G-TGCGTTTA---CTCTGCTTAATA------------------------ACGTAGACAAA--CA---AA---------AGGAAT---CT---CA-------------------TG-CA-TTGA----AAC--------CTACACG--T-AT------TGGG-T--ACTTTTATGGGGGAAA-T-T--T-GAATAAA-CTGGTATG-TTATATTTCACTTTT-A---TGTA------AT--ATTTCt
gi|14 : tCACTGAATAGTGGTGTC---------------GCTCCCTTTTTGTGTTATAAA-A---GAG----TATGT-A---ATCTGGC-----AACCGCTTG-----------------------------------------AGCAGAAAATTATGTAGACAAACCCAATCAA---------AGGAAT---GC---CA-------------------TG-CA-ATGA----AACATATA---CG-------T-AT------TGTG-T--AC
gi|15 : tgtgtcctcctccacctttaggtacttgcagcacTCTATTT-AATATA--AACCGTGT--------T-----TTT------T------------ATGAGAACATA------CACTGTGAAATAGTTTCTACT-C-T-ATTTGCCCATAGTGAA-----TTCA----TG--C-GTTC-T----------AAACT-G-C--------TATTTCA-TAGC----------AAAGA-TGCAGGGTAG--TACTTCTTATATTCAGGGTAAGTTGAT
gi|16 : ATA------TACTGTGAAATAGTTTCTGCT-T-T-AATTGCCCGTA-TGAATGT-CTTCGAAA-TGAACGGCCC-TTG
gi|17 : ------TACTGTGAAATAATTTCTG-TTC-T-ATTTGCTCTCAGTGAATGG-CTTCGAAACTGAAC-GCCC-TTG
gi|18 : TTTTG-TAGC----------GAAGA-TGCAAGGTAG--TACTTTTTGTATTCAGGGTACGTTTATTGA-TG
gi|19 : TATTCAGGGTGCGTTTATTGT-TGAAACATGACTGCT--TCTTCTCTTT-TTTAAT
gi|2 : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCC-TTTCTGTGTTA-AAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGC--GATGCACAGG---CTCTGCTTAATA----T--TATTATAGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATTTGA----AAC--------C--------TAAT------TCTG-T--ACTTTTAGGGGGGG---G-A--T-CAGTAGA-CTCGTATG-GCGTA--TTACTTTT-A---TGTA------TT--ATTTCTATCC-AAAATA--AACCGTAT--------TGT--TTTT-----ATCA----------ATGAGAACATA------TATCGTGAAATAG--------------TTTGACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATTAA-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAGTATATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCACGCCTTTTCTTT-TTTAATttg
gi|20 : CTTCCTTTTTGTGTTATAAA-A---GGGT--TTATGT-A---ATCTAGCTGGCAAATCGCTCGC--
gi|21 : AAC----------AAAGA-TGCAGGGTAA--TACTTTTCATATTCAGAG
gi|3 : cGCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCCCTTTCTGTGTTATAAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCACAGG---CTCTGCTTAATA----TCTTAT---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TCTG-T--ACTTTTAGGGGGGGGG-GGA--T-CAGTAGA-CTCGTATG-GCGTATTTTACTTTT-A---TGTA------TT--ATTTCTATCC-AAAATA--AACCGTAT--------TGT--TTTT-----ATCA----------ATGAGAACATA------TATCGTGAAATAGTT---------------GACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATT-A-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCA--GCTTTTCTTT-TTTAATca
gi|4 : CACTGAATGGAAGTGTTCAGCAGA--GCTGGCTCTCGCTTTTTGGGTTATAAA-GAACGGGT--ATATGC-A---ATAGTGC-----GACCACTTGC--G-TGCGCTTG---CTCTGTTGAATAAGCCC--TAC---TG-------TTATGTAGACAAA-CTA---AAGA-------AGGA------T---CA-------------------TG-TA-TTGA----AACTGTACTTTC--------T-ATACT---TTTGAT--ACTTTTAGGG----AA-A-A--T-CAGTATA-CT-GTATG-TTATATTTTATTTCT-A---TGTA------TT--ATTTTTACTTAAAAATATCTATTATGT--------TGTTATTTT-----AA------------ATGGAAACAT-------TTCTGTGAAATA-TTTCTGTT-C-T-ATTTGCCT-TAGTGAATGGACTTCGAAACTGA---GTCC-TTGA-TGGTTTAATTT-A-TTTACAGTT--TTTTGTTAAC----------AAAGATTGCAGAG--A--TCTTTTTTGTATTCA
gi|5 : gtgttctcctccccctttaggtacatgcagcaaCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTA-----------GCTGGCAAA-T-CGCTCG---CTCTGCTAAAGA--------AC-----------ATTATGTAGACAAA-CC----AA---------AGGAAT---GT---CA-------------------TG-CA-CTGA----AAC--------CTATACG--T-AT------TGTG-T--ACTTTTA-GGGAACAA-A-A--T-CGGTAGA-CTGGTATG-TTATATTTTACTT--------------------------TATTT-AAAATA--AACCATGT--------T-T--T---------T------------ATGAGAAGATT------TACTGTGAAATAGTTTCTGTT-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC--CCC-TTGATTGG--TAAA---A-TATATAATTTATTTTG-TAGA----------AGAGA-TGTAGGGCAG--TGTTTCTTGTATTCAGGGTGCGTTTATTGA-TGAAA
gi|6 : tcgctcgctctnggcgtGTCCAGCAGATCGCGTGCGCTTGCTTTGTGCATTGTAAAGA---AAG---------------------------ACTGCTCGC--TCTGCGTTAGAGGC----CTCATTG----T--TAC---AGCAGATAATAACGTAGACAAA-GCA---AA---------T---AT---GT---CAATCATATTAATAAATAAATTG-AG-TTGA----AAT--------T--------T-ATACGTACTGTG-TG-AATTGTAGACAA--AA-A-A--TTCAGTCGA-CATATATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAA-TA--AACCGTA----------------------------------------AGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-TTATTTGCCCA------ATGT-----------GAAT-GTCC-T-------------------ATACAATATTTTTTG-CAGC----------AAAGA-TACAGGGTAG--TACTTTTTGCA
gi|7 : tTTACGTAGATAAA-CCA---AACAATAATAAATGAATTGAGTTGACA-------------------TT-TA-TAGA----TAC--------G--------T-AT------TGTG-T--ATTTTTAGTAAATAAA-A-T--T-TTGTAGA-CATACATG-TTATATTTTACTTTT-A---TGTACTAGTATT--ATTTCTATTT-AAAATA--TACCATGC--------T----TTTC-----GT------------ATGAGAACAAC------TTCTGTAAATCAAATTCTG-C-C-T-----------------------TCGAAACTGAAC-GCCC-TTGATTGG--TAAATC-A-TATACAATTTATTTTG-TAGCAACGACACTGAAAGA-TGCAGGGTAG--TACTGTTTGTATTCAGGGTGCGTTTATTGG-TGAAA-CTGGCTGCA--TTTTTTTTTTATTT
gi|8 : ttgGTCCAGCAGATCGCGTGCGCTTGCTTTT-GCATTG-AAA-A---AAG---------------------------ACTGCTCGC--TCTGCATTAGAGAC----CTCATTG----T--TAC---AGCAGATAAAAACGTAGACAAA-GCA---AA-----------GTAT---GT---CAATCACTAGTTAATAAA---TA-AA-TTGAGTTAAATTAA-----C--------G-AC------TGTG-TGAA---TTGGGTAGACAA-A-AATT-CAGTCGAACATATATG-TTATATTTAACTTT--A---TGTA------TT--ATTTCTATTT-AACATA--AACCG----------------------------------------TAAGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-T-TATTGCCC-----GAATG-----------TGAAT-TTCC-T-----------AACA-A-TAT--------TTTTG-CAGC----------AAAGA-TACAGGGTA---TACTT
gi|9 : t-TTGA----AAT--------T--------T-AT------AAT-------TTTTAAGGAAA-AA-A-A--T-CATTAGG-CTTAAATG-TTATATTTTACTTTTTA---TGTA------TA--ATTTGTATTT-AAAATA--AACCGTGT--------T----CTTT-----GT------------AAGAGAACATT------TACTGTGAATTAGTTTCTG-T-CCT-GTTTGCCCATAGTGAATGT-CTTCGAAAATGAAG-ACCC-GTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAGGA-TGCAGCGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGG-TGAAACCTGTCTGCA--TCTTTTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TACGAANNNNNNNNNNNNNNNNNNNNNNNNNGA
Unaligned ( gi|23 ): GGTACTTGCAGTGCTCCTAATTTTATAACTTG
Alignments
lowQualScore : 11 1111 111111111 1111 111 444444444444444444444 1111 111111111 111 66666666666666666666666666666666666666666666666666666 111111 1111111 111111 777777777777777777777777777777777777 1 1111111111 1
lowQualScore : 33 3 2 0 0 3 666 0000 3 666 444444444 0 8888 333 444 3 2 0 777777777777777777777 3 0000 999999999 666 000 22222222222222222222222222222222222222222222222222222 3 555555 3 77 6666666 3 3 44 3 3 55 3 3 666 000000 55 3 55 444444444444444444444444444444444444 9999999 8 333 44 3 66 3 2 2 1 3 999 3 3 3 2222222222 2 33 4 3 66 3
lowQualScore : .. . . . . . ... .... . ... ......... . .... ... ... . . . ..................... . .... ......... ... ... ..................................................... . ...... . .. ....... . . .. . . .. . . ... ...... .. . .. .................................... ....... . ... .. . .. . . . . . ... . . . .......... . .. . . .. .
lowQualScore : 88 0 2 8 8 6 444 6666 6 444 111111111 5 6666 333 000 2 4 6 888888888888888888888 6 7777 555555555 444 000 33333333333333333333333333333333333333333333333333333 3 444444 3 99 7777777 3 3 66 3 3 88 3 6 444 555555 00 6 00 777777777777777777777777777777777777 8888888 5 777 77 5 44 0 9 9 5 6 222 3 3 1 5555555555 9 99 0 9 99 3
consensus : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
Reference ( family-2562 ) : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
gi|1 : TGCACTGAATTGTGGTGTTCAGCAGA--GCGGGTTCTCCCTTTTTGTGTTATAAA-A---GAAT--ATATGT-A---ATATA---------------GC--G-TGCGCTCG---CTTTGCTAAAGAACTTT--TAT---AGCAGGAAATTATGTAGAGAAA-CC----AA---------AGAAAT---GT---CC-------------------T---A-T--------AC--------G--------T-GT------TGTA-T--ACTTGTA----GGGAATA-A--T-CAGTAGA-CGGCTATG-TTATATTTTACTTTT-AATTTATG------TTCCATTTCTATTT-GAAACA--AGCCGTGT--------T-T--TTTT----------------------AGAGCATA------TACTGTAAAATAGTTTCTATT-C-T-ATTAGCCCATAGTGAATAT-CTTCGAAATTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTC-TACA----------AAAGA-TGCAGGGTAG--TACTTTTTGTAATCAGGGTGCGTTTATTGT-TGAAATCTGACTGCG--TCTTTTCTCG-TTTAAT
gi|10 : atcctccacctttaggtactA-A-A--T-CAGTAGA-CTGGTATG-TTATATTGTACCTTA-A---TTTA------TT--ATTTCTATTT-AGATTA--A-CCATGTTTTTTTTATGT--TTTTTATTTATTTCTTTTGTTTTATGAGAACATACATGTATACTGT-AAATAGATTCTGAT-C-T-ATTTGCCTATAGTGAATGC-CTTCGAAATTGAAC-GCCC-TTGATCGG--TAAATT-A-AATACAATTTATTTTG-TAGA----------AAAGA-TGCAGGGTAG--TACTTTTTGTA---------CGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTttg
gi|11 : AACTTAAC-GCCCGTTGATTG---TA--TT-ACTATACAATTTAATTTG-C-GT----------TATGT-TGCAGGCGAG--CATCTTTTGTATACGGGGTGCGTTTATTGATTGAAAGCTTACTTCA--TTTATTATTTATTT
gi|12 : ttcaataaatcataattattgcataaatagtgtatttatgctatcagtagttccaaaagtttatatataactgctgaataactgctttattgacctgtcatgtGTTCAGCAGA--GCGGGGGCGTCCTTTT-GTGTTATAAA-A---GAGT--ATATGT-ATCTAGCTGGC-----AA---ATCG------GCA-TCG---CTCTGCTAAAGA--------AC---A-C------TTGTGTAGACAAA-CC-----A---------AGTAAT---GTC--CA-------------------TGCCA-TTGA----AAC--------CTAAATACGT-AT------TGTG-T--ACTTTTA-GGGAAAAA-A-A--T-CGGTAG--CGTGTATGTTTATATTTT
gi|13 : tgtgtcccctccctataggtacttgcagcatcaaAA-A---GAATCGGTATGCCA---ATCTGGC-----AACCGCTCGC--G-TGCGTTTA---CTCTGCTTAATA------------------------ACGTAGACAAA--CA---AA---------AGGAAT---CT---CA-------------------TG-CA-TTGA----AAC--------CTACACG--T-AT------TGGG-T--ACTTTTATGGGGGAAA-T-T--T-GAATAAA-CTGGTATG-TTATATTTCACTTTT-A---TGTA------AT--ATTTCt
gi|14 : tCACTGAATAGTGGTGTC---------------GCTCCCTTTTTGTGTTATAAA-A---GAG----TATGT-A---ATCTGGC-----AACCGCTTG-----------------------------------------AGCAGAAAATTATGTAGACAAACCCAATCAA---------AGGAAT---GC---CA-------------------TG-CA-ATGA----AACATATA---CG-------T-AT------TGTG-T--AC
gi|15 : tgtgtcctcctccacctttaggtacttgcagcacTCTATTT-AATATA--AACCGTGT--------T-----TTT------T------------ATGAGAACATA------CACTGTGAAATAGTTTCTACT-C-T-ATTTGCCCATAGTGAA-----TTCA----TG--C-GTTC-T----------AAACT-G-C--------TATTTCA-TAGC----------AAAGA-TGCAGGGTAG--TACTTCTTATATTCAGGGTAAGTTGAT
gi|16 : ATA------TACTGTGAAATAGTTTCTGCT-T-T-AATTGCCCGTA-TGAATGT-CTTCGAAA-TGAACGGCCC-TTG
gi|17 : ------TACTGTGAAATAATTTCTG-TTC-T-ATTTGCTCTCAGTGAATGG-CTTCGAAACTGAAC-GCCC-TTG
gi|18 : TTTTG-TAGC----------GAAGA-TGCAAGGTAG--TACTTTTTGTATTCAGGGTACGTTTATTGA-TG
gi|19 : TATTCAGGGTGCGTTTATTGT-TGAAACATGACTGCT--TCTTCTCTTT-TTTAAT
gi|2 : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCC-TTTCTGTGTTA-AAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGC--GATGCACAGG---CTCTGCTTAATA----T--TATTATAGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CATTTGA----AAC--------C--------TAAT------TCTG-T--ACTTTTAGGGGGGG---G-A--T-CAGTAGA-CTCGTATG-GCGTA--TTACTTTT-A---TGTA------TT--ATTTCTATCC-AAAATA--AACCGTAT--------TGT--TTTT-----ATCA----------ATGAGAACATA------TATCGTGAAATAG--------------TTTGACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATTAA-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAGTATATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCACGCCTTTTCTTT-TTTAATttg
gi|20 : CTTCCTTTTTGTGTTATAAA-A---GGGT--TTATGT-A---ATCTAGCTGGCAAATCGCTCGC--
gi|21 : AAC----------AAAGA-TGCAGGGTAA--TACTTTTCATATTCAGAG
gi|3 : cGCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCCCTTTCTGTGTTATAAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCACAGG---CTCTGCTTAATA----TCTTAT---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TCTG-T--ACTTTTAGGGGGGGGG-GGA--T-CAGTAGA-CTCGTATG-GCGTATTTTACTTTT-A---TGTA------TT--ATTTCTATCC-AAAATA--AACCGTAT--------TGT--TTTT-----ATCA----------ATGAGAACATA------TATCGTGAAATAGTT---------------GACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATT-A-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCA--GCTTTTCTTT-TTTAATca
gi|4 : CACTGAATGGAAGTGTTCAGCAGA--GCTGGCTCTCGCTTTTTGGGTTATAAA-GAACGGGT--ATATGC-A---ATAGTGC-----GACCACTTGC--G-TGCGCTTG---CTCTGTTGAATAAGCCC--TAC---TG-------TTATGTAGACAAA-CTA---AAGA-------AGGA------T---CA-------------------TG-TA-TTGA----AACTGTACTTTC--------T-ATACT---TTTGAT--ACTTTTAGGG----AA-A-A--T-CAGTATA-CT-GTATG-TTATATTTTATTTCT-A---TGTA------TT--ATTTTTACTTAAAAATATCTATTATGT--------TGTTATTTT-----AA------------ATGGAAACATT------T-CTGTGAAATA-TTTCTGTT-C-T-ATTTGCCT-TAGTGAATGGACTTCGAAACTGA---GTCC-TTGA-TGGTTTAATTT-A-TTTACAGTT--TTTTGTTAAC----------AAAGATTGCAGAG--A--TCTTTTTTGTATTCA
gi|5 : gtgttctcctccccctttaggtacatgcagcaaCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTA-----------GCTGGCAAA-T-CGCTCG---CTCTGCTAAAGA--------AC-----------ATTATGTAGACAAA-CC----AA---------AGGAAT---GT---CA-------------------TG-CA-CTGA----AAC--------CTATACG--T-AT------TGTG-T--ACTTTTA-GGGAACAA-A-A--T-CGGTAGA-CTGGTATG-TTATATTTTACTT--------------------------TATTT-AAAATA--AACCATGT--------T-T--T---------T------------ATGAGAAGATT------TACTGTGAAATAGTTTCTGTT-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC--CCC-TTGATTGG--TAAA---A-TATATAATTTATTTTG-TAGA----------AGAGA-TGTAGGGCAG--TGTTTCTTGTATTCAGGGTGCGTTTATTGA-TGAAA
gi|6 : tcgctcgctctnggcgtGTCCAGCAGATCGCGTGCGCTTGCTTTGTGCATTGTAAAGA---AAG---------------------------ACTGCTCGC--TCTGCGTTAGAGGC----CTCATTG----T--TAC---AGCAGATAATAACGTAGACAAA-GCA---AA---------T---AT---GT---CAATCATATTAATAAATAAATTG-AG-TTGA----AAT--------T--------T-ATACGTACTGTG-TG-AATTGTAGACAA--AA-A-A--TTCAGTCGA-CATATATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAA-TA--AACCGTA----------------------------------------AGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-TTATTTGCCCA------ATGT-----------GAAT-GTCC-T-------------------ATACAATATTTTTTG-CAGC----------AAAGA-TACAGGGTAG--TACTTTTTGCA
gi|7 : tTTACGTAGATAAA-CCA---AACAATAATAAATGAATTGAGTTGACA-------------------TT-TA-TAGA----TAC--------G--------T-AT------TGTG-T--ATTTTTAGTAAATAAA-A-T--T-TTGTAGA-CATACATG-TTATATTTTACTTTT-A---TGTACTAGTATT--ATTTCTATTT-AAAATA--TACCATGC--------T----TTTC-----GT------------ATGAGAACAAC------TTCTGTAAATCAAATTCTG-C-C-T-----------------------TCGAAACTGAAC-GCCC-TTGATTGG--TAAATC-A-TATACAATTTATTTTG-TAGCAACGACACTGAAAGA-TGCAGGGTAG--TACTGTTTGTATTCAGGGTGCGTTTATTGG-TGAAA-CTGGCTGCA--TTTTTTTTTTATTT
gi|8 : ttgGTCCAGCAGATCGCGTGCGCTTGCTTTT-GCATTG-AAA-A---AAG---------------------------ACTGCTCGC--TCTGCATTAGAGAC----CTCATTG----T--TAC---AGCAGATAAAAACGTAGACAAA-GCA---AA-----------GTAT---GT---CAATCACTAGTTAATAAA---TA-AA-TTGAGTTAAATTAA-----C--------G-AC------TGTG-TGAA---TTGGGTAGACAA-A-AATT-CAGTCGAACATATATG-TTATATTTAACTTT--A---TGTA------TT--ATTTCTATTT-AACATA--AACCG----------------------------------------TAAGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-T-TATTGCCC-----GAATG-----------TGAAT-TTCC-T-----------AACA-A-TAT--------TTTTG-CAGC----------AAAGA-TACAGGGTA---TACTT
gi|9 : t-TTGA----AAT--------T--------T-AT------AAT-------TTTTAAGGAAA-AA-A-A--T-CATTAGG-CTTAAATG-TTATATTTTACTTTTTA---TGTA------TA--ATTTGTATTT-AAAATA--AACCGTGT--------T----CTTT-----GT------------AAGAGAACATT------TACTGTGAATTAGTTTCTG-T-CCT-GTTTGCCCATAGTGAATGT-CTTCGAAAATGAAG-ACCC-GTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAGGA-TGCAGCGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGG-TGAAACCTGTCTGCA--TCTTTTCT
blockSeqs : TC G G G AAC TCGG C TCT AGCTGGCAA AAA TTT AGG T A TTATTATAGCAGATA C AATC CAATAATAA TGA TGA ATCACTAGTTAATAAATAAATTGAGTTAAATTAAC A ACGTAC A GA TGGGGGA . G AT T A TG T T . CTAGTA . A TC TTTTTTTATGTTTTTTATTTATTTCTTTTGTTTT ACATGTA A TC TA A GA T G G T T GTT A C T AACGACACTG T TA T T CG A
blockSeqs : TC T T . . TA . . GGCA GA CAG AGA T T TCTTATAGCAGATA . A GA . C ATCATATTAATAAATAAATTGAGTTGAAATT . ACT . G GGGGGGG . . . . . GT . . . . . . . TGTTTTTATCA A C CC A A C C . . T T G . . . . . . . G . A
blockSeqs : . T T . . TA . . GGCA TC CAG . T T TTACAGCAGATA . A . . . TGCCATTGAAACCTAAATACG . . . . GGGGGGG . . . . . TG . . . . . . . TGTTTTTATCA A C C A G T C . . T C T . . . . . . . C . .
blockSeqs : . G C . . TT . . GGCA TC CTT . T T TTACAGCAGATA . A . . . TGTATTGAAACTGTACTTTC . . . . GTAAATA . . . . . TC . . . . . . . TGTTATTTTAA A T C A T G C . . T C T . . . . . . . T . .
blockSeqs : . T C . . TA . . GGCA G CTC . T G AGCCCTACTG . A . . . TGCATTGAAACCTACACG . . . . GGTAGAC . . . . . TC . . . . . . . TTTTCGT A T T A A T C . . T T G . . . . . . . T . .
blockSeqs : . T C . . TA . . GGCA G TTA . T A AGCAGAAA . A . . . TGCAATGAAACATATACG . . . . GGGAAA . . . . . TG . . . . . . . TCTTTGT T . C A A T C . . T T G . . . . . . . C .
blockSeqs : . . . . . TA . . TGCG G TTA . . C ACAC . A . . . TGCACTGAAACCTATACG . . . . GGGAAC . . . . . AT . . . . . . . TTTTT T . C A A T C . . T T G . . . . . . . . .
blockSeqs : . . . . . A . TC . . C AC . A . . . TGCATTTGAAACC . . . . AGGAAA . . . . . AT . . . . . . . TTTT T . T T A T C . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . TGCATTGAAACC . . . . GACAA . . . . . AT . . . . . . . . C . C G A T A . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . TTTATAGATACG . . . . GGG . . . . . TT . . . . . . . . T . T . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . T . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : GGCA***** TTACAGCAGATA********* A*** GGGAGA* *** ** TTTTTT******************************
originalCons : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TGTG-T--ACTTTTAGGGGGGGAA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGT--------TGT--TTTT-----AT------------ATGAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
finalCons : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGCA-----ACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATATTACAGCAGATA---------ATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---CA-------------------TG-CA-TTGA----AAC--------C--------T-AT------TGTG-T--ACTTTTAGGGAGA-AA-A-A--T-CAGTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTT-AAAATA--AACCGTGTTTTTTT------------------------------ATGAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TACGAANNNNNNNNNNNNNNNNNNNNNNNNNGA
Unaligned ( gi|23 ): GGTACTTGCAGTGCTCCTAATTTTATAACTTG
Alignments
lowQualScore : 11 1111 111111111 1111 111 444444444444444444444 111111111 555555555555555555555555555555555555555555555555555555555555555555555 22222222222222222222222222222222 1 1111111111 1
lowQualScore : 33 3 2 0 0 3 666 0000 3 666 444444444 2 8888 333 444 3 2 0 777777777777777777777 3 666 999999999 666 666 3 888888888888888888888888888888888888888888888888888888888888888888888 3 77 3 888888 44 3 3 3 55 3 3 555 999999 44 11111111111111111111111111111111 9999999 8 333 44 3 66 3 2 2 1 3 999 3 3 3 2222222222 2 33 4 3 66 3
lowQualScore : .. . . . . . ... .... . ... ......... . .... ... ... . . . ..................... . ... ......... ... ... . ..................................................................... . .. . ...... .. . . . .. . . ... ...... .. ................................ ....... . ... .. . .. . . . . . ... . . . .......... . .. . . .. .
lowQualScore : 88 0 2 8 8 6 444 6666 6 444 111111111 0 6666 333 000 2 4 6 888888888888888888888 6 444 555555555 444 444 6 555555555555555555555555555555555555555555555555555555555555555555555 3 99 6 222222 66 3 3 3 88 3 3 888 666666 66 77777777777777777777777777777777 8888888 5 777 77 5 44 0 9 9 5 6 222 3 3 1 5555555555 9 99 0 9 99 3
consensus : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---C-A-------------------TGC-A-TTGA----AAC--------C------T-A--------T------TGTG-T--ACTTTTA-GGGAGA--AAA--AT-CA-GTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTTAAAATAAACC------G-TG-TT-TT--TT-T----AT----GAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
Reference ( family-2562 ) : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGCGCTCCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCGCTNG---CTCTGCTNAATA----T--TAC---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---C-A-------------------TGC-A-TTGA----AAC--------C------T-A--------T------TGTG-T--ACTTTTA-GGGAGA--AAA--AT-CA-GTAGA-CTNGTATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTTAAAATAAACC------G-TG-TT-TT--TT-T----AT----GAGAACATN------TACTGTGAAATAGTTTCTG-T-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTTT-TTTAAT
gi|1 : TGCACTGAATTGTGGTGTTCAGCAGA--GCGGGTTCTCCCTTTTTGTGTTATAAA-A---GAAT--ATATGT-A---ATATA---------------GC--G-TGCGCTCG---CTTTGCTAAAGAACTTT--TAT---AGCAGGAAATTATGTAGAGAAA-CC----AA---------AGAAAT---GT---C-C-------------------T---A-T--------AC--------G------T-G--------T------TGTA-T--ACTTGTA-GG--GA--ATA--AT-CA-GTAGA-CGGCTATG-TTATATTTTACTTTT-AATTTATG------TTCCATTTCTATTTGAAACAAGCC------G-TG-TT-TT--TT-T-----------AGAGCATA------TACTGTAAAATAGTTTCTATT-C-T-ATTAGCCCATAGTGAATAT-CTTCGAAATTGAAC-GCCC-TTGATTGG--TAAATT-A-TATACAATTTATTTTC-TACA----------AAAGA-TGCAGGGTAG--TACTTTTTGTAATCAGGGTGCGTTTATTGT-TGAAATCTGACTGCG--TCTTTTCTCG-TTTAAT
gi|10 : atcctccacctttaggtactAA--AT-CA-GTAGA-CTGGTATG-TTATATTGTACCTTA-A---TTTA------TT--ATTTCTATTT-AGATTAACC------A-TGTTT-TT--TT-T----AT----Gttg
gi|10 : ATGTTTT--TTTT-A---TGT------------TTTTTATTTA--------T------T-TC-TT-TTGTTT-T----AT----GAGAACATACATGTATACTGT-AAATAGATTCTGAT-C-T-ATTTGCCTATAGTGAATGC-CTTCGAAATTGAAC-GCCC-TTGATCGG--TAAATT-A-AATACAATTTATTTTG-TAGA----------AAAGA-TGCAGGGTAG--TACTTTTTGTA---------CGTTTATTGA-TGAAATCTGACTGCA--TCTTTTCTttttttatttatttcttttgttttatgagaacatacatgtatactgtaaatagattctgatctatttgcctatagtgaatgccttcgaaattgaacgcccttgatcggtaaattaaatacaatttattttgtagaaaagatgcagggtagtactttttgtacgtttattgatgaaatctgactgcatcttttct
gi|11 : aaatcagtagactggtatgttatattgtaccttaatttattatttctatttagattaaccAACTTAAC-GCCCGTTGATTG---TA--TT-ACTATACAATTTAATTTG-C-GT----------TATGT-TGCAGGCGAG--CATCTTTTGTATACGGGGTGCGTTTATTGATTGAAAGCTTACTTCA--TTTATTATTTATTT
gi|12 : ttcaataaatcataattattgcataaatagtgtatttatgctatcagtagttccaaaagtttatatataactgctgaataactgctttattgacctgtcatgtGTTCAGCAGA--GCGGGGGCGTCCTTTT-GTGTTATAAA-A---GAGT--ATATGT-ATCTAGCTGGC-----AAA---TCG------GCA-TCG---CTCTGCTAAAGA--------AC---A-C------TTGTGTAGACAAA-CCA---A-----------GTAAT---GT---CCA-------------------TGCCA-TTGA----AAC--------C------T-AAATACGTAT------TGTG-T--ACTTTTA-GGGAAA--AAA--AT-CG-GTAG--CGTGTATGTTTATATTTT
gi|13 : tgtgtcccctccctataggtacttgcagcatcaaAA-A---GAATCGGTATGCCA---ATCTGGC-----AACCGCTCGC--G-TGCGTTTA---CTCTGCTTAATA------------------------ACGTAGACAAA--CA---AA---------AGGAAT---CT---C-A-------------------TGC-A-TTGA----AAC--------CTACACGT-A--------T------TGGG-T--ACTTTTATGGGGGA--AAT--TT-GA-ATAAA-CTGGTATG-TTATATTTCACTTTT-A---TGTA------AT--ATTTCt
gi|14 : tCACTGAATAGTGGTGTC---------------GCTCCCTTTTTGTGTTATAAA-A---GAG----TATGT-A---ATCTGGC-----AACCGCTTG-----------------------------------------AGCAGAAAATTATGTAGACAAACCCAATCAA---------AGGAAT---GC---C-A-------------------TGC-A-ATGA----AACATATA---CG-----T-A--------T------TGTG-T--AC
gi|15 : tgtgtcctcctccacctttaggtacttgcagcacTCTATTTAATATAAACC------G-TG-TT-TT--TT------AT----GAGAACATA------CACTGTGAAATAGTTTCTACT-C-T-ATTTGCCCATAGTGAA-----TTCA----TG--C-GTTC-T----------AAACT-G-C--------TATTTCA-TAGC----------AAAGA-TGCAGGGTAG--TACTTCTTATATTCAGGGTAAGTTGAT
gi|16 : ATA------TACTGTGAAATAGTTTCTGCT-T-T-AATTGCCCGTA-TGAATGT-CTTCGAAA-TGAACGGCCC-TTG
gi|17 : ------TACTGTGAAATAATTTCTG-TTC-T-ATTTGCTCTCAGTGAATGG-CTTCGAAACTGAAC-GCCC-TTG
gi|18 : TTTTG-TAGC----------GAAGA-TGCAAGGTAG--TACTTTTTGTATTCAGGGTACGTTTATTGA-TG
gi|19 : TATTCAGGGTGCGTTTATTGT-TGAAACATGACTGCT--TCTTCTCTTT-TTTAAT
gi|2 : GCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCC-TTTCTGTGTTA-AAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGC--GATGCACAGG---CTCTGCTTAATA----T--TATTATAGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---C-A-------------------TGC-ATTTGA----AAC--------C------TAA--------T------TCTG-T--ACTTTTA-GGG-GG--GGG--AT-CA-GTAGA-CTCGTATG-GCGTA--TTACTTTT-A---TGTA------TT--ATTTCTATCCAAAATAAACC------G-TA-TTGTT--TT-TATCAAT----GAGAACATA------TATCGTGAAATAG--------------TTTGACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATTAA-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAGTATATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCACGCCTTTTCTTT-TTTAATttg
gi|20 : CTTCCTTTTTGTGTTATAAA-A---GGGT--TTATGT-A---ATCTAGCTGGCAAATCGCTCGC--
gi|21 : AAC----------AAAGA-TGCAGGGTAA--TACTTTTCATATTCAGAG
gi|3 : cGCTGCACTGAATAGTGGCGTCCAGCAGA--GCGTGTGCTCCCTTTCTGTGTTATAAA-G---GAGT--ACATGT-A---ATCTGGC-----AACCGCTCGC--G-TGCACAGG---CTCTGCTTAATA----TCTTAT---AGCAGATAATTACGTAGACAAA-CCA---AA---------AGGAAT---GT---C-A-------------------TGC-A-TTGA----AAC--------C------T-A--------T------TCTG-T--ACTTTTA-GGGGGG--GGGGGAT-CA-GTAGA-CTCGTATG-GCGTATTTTACTTTT-A---TGTA------TT--ATTTCTATCCAAAATAAACC------G-TA-TTGTT--TT-T----ATCAATGAGAACATA------TATCGTGAAATAGTT---------------GACCATAGTGAATGT-CTTCGAAACTGAAC-GCCC-TTGACTGT--TAAATT-A-TAGGCAATTTATTTTG-TAGC----------AAAGA-TGCAGGGTAG--TATTTCTTATATTCAGGGTACGTTTATTGA-TAAAATCTGACTGCA--GCTTTTCTTT-TTTAATca
gi|4 : CACTGAATGGAAGTGTTCAGCAGA--GCTGGCTCTCGCTTTTTGGGTTATAAA-GAACGGGT--ATATGC-A---ATAGTGC-----GACCACTTGC--G-TGCGCTTG---CTCTGTTGAATAAGCCC--TAC---TG-------TTATGTAGACAAA-CTA---AAGA-------AGGA------T---C-A-------------------TGT-A-TTGA----AACTGTACTTTC------T-A--------TACT---TTTGAT--ACTTTTA-GGGA-----AA--AT-CA-GTATA-CT-GTATG-TTATATTTTATTTCT-A---TGTA------TT--ATTTTTACTTAAAA-ATATCTATTATGTTG-TT-AT--TT-TAA--AT----GGAAACATT------T-CTGTGAAATA-TTTCTGTT-C-T-ATTTGCCT-TAGTGAATGGACTTCGAAACTGA---GTCC-TTGA-TGGTTTAATTT-A-TTTACAGTT--TTTTGTTAAC----------AAAGATTGCAGAG--A--TCTTTTTTGTATTCA
gi|5 : gtgttctcctccccctttaggtacatgcagcaaCCTTTTTGTGTTATAAA-A---GAGT--ATATGT-A---ATCTA-----------GCTGGCAAA-T-CGCTCG---CTCTGCTAAAGA--------AC-----------ATTATGTAGACAAA-CC----AA---------AGGAAT---GT---C-A-------------------TGC-A-CTGA----AAC--------CTATACGT-A--------T------TGTG-T--ACTTTTA-GGGAAC--AAA--AT-CG-GTAGA-CTGGTATG-TTATATTTTACTT--------------------------TATTTAAAATAAACC------A-TG----TT--TT-T----AT----GAGAAGATT------TACTGTGAAATAGTTTCTGTT-C-T-ATTTGCCCATAGTGAATGT-CTTCGAAACTGAAC--CCC-TTGATTGG--TAAA---A-TATATAATTTATTTTG-TAGA----------AGAGA-TGTAGGGCAG--TGTTTCTTGTATTCAGGGTGCGTTTATTGA-TGAAA
gi|6 : tcgctcgctctnggcgtGTCCAGCAGATCGCGTGCGCTTGCTTTGTGCATTGTAAAGA---AAG---------------------------ACTGCTCGC--TCTGCGTTAGAGGC----CTCATTG----T--TAC---AGCAGATAATAACGTAGACAAA-GCA---AA---------T---AT---GT---C-AATCATATTAATAAATAAATTGA-G-TTGA----AAT--------T------T-A--------TACGTACTGTG-TG-AATTGTA-GACAAA--AAA--TT-CA-GTCGA-CATATATG-TTATATTTTACTTTT-A---TGTA------TT--ATTTCTATTTAAA-TAAACC------G-TA-----------------------AGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-TTATTTGCCCA------ATGT-----------GAAT-GTCC-T-------------------ATACAATATTTTTTG-CAGC----------AAAGA-TACAGGGTAG--TACTTTTTGCA
gi|7 : tTTACGTAGATAAA-CCA---AACAATAATAAATGAATTGAGTTGAC-A-------------------TTT-A-TAGA----TAC--------G------T-A--------T------TGTG-T--ATTTTTA-GTAAAT--AAA--AT-TTTGTAGA-CATACATG-TTATATTTTACTTTT-A---TGTACTAGTATT--ATTTCTATTTAAAATATACC------A-TG-CT-TT--TCGT----AT----GAGAACAAC------TTCTGTAAATCAAATTCTG-C-C-T-----------------------TCGAAACTGAAC-GCCC-TTGATTGG--TAAATC-A-TATACAATTTATTTTG-TAGCAACGACACTGAAAGA-TGCAGGGTAG--TACTGTTTGTATTCAGGGTGCGTTTATTGG-TGAAA-CTGGCTGCA--TTTTTTTTTTATTT
gi|8 : ttgGTCCAGCAGATCGCGTGCGCTTGCTTTT-GCATTG-AAA-A---AAG---------------------------ACTGCTCGC--TCTGCATTAGAGAC----CTCATTG----T--TAC---AGCAGATAAAAACGTAGACAAA-GCA---AA-----------GTAT---GT---C-AATCACTAGTTAATAAA---TAA-A-TTGAGTTAAATTAA-----C------G-A--------C------TGTG-TGAA---TTG-GGTAGACAAAA--ATTCA-GTCGAACATATATG-TTATATTTAACTTT--A---TGTA------TT--ATTTCTATTTAACATAAACC------G--------------------T----AAGAAAATT------TACTTTGAGTTTGTTTCTG-T-T-T-TATTGCCC-----GAATG-----------TGAAT-TTCC-T-----------AACA-A-TAT--------TTTTG-CAGC----------AAAGA-TACAGGGTA---TACTT
gi|9 : t-TTGA----AAT--------T------T-A--------T------AAT-------TTTTA-AGGAAA--AAA--AT-CA-TTAGG-CTTAAATG-TTATATTTTACTTTTTA---TGTA------TA--ATTTGTATTTAAAATAAACC------G-TG-TT-CT--TTGT----AA----GAGAACATT------TACTGTGAATTAGTTTCTG-T-CCT-GTTTGCCCATAGTGAATGT-CTTCGAAAATGAAG-ACCC-GTGATTGG--TAAATT-A-TATACAATTTATTTTG-TAGC----------AAGGA-TGCAGCGTAG--TACTTTTTGTATTCAGGGTGCGTTTATTGG-TGAAACCTGTCTGCA--TCTTTTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TACGAANNNNNNNNNNNNNNNNNNNNNNNNNGA
Unaligned ( gi|23 ): GGTACTTGCAGTGCTCCTAATTTTATAACTTG