lowQualScore : 1 555555 33 111 111 111 222222222 1 4444444444 33 6666666666666666666666666666666666666 22222 3333333333 66666666666666666666666 2 1 1111 44444444444444 111111 3 2222222 2222222222 4444444444444444444444444 11 111 111 11111 1111 44444 333333333333333 2 2 33333 2 8888888888888888 111 2 1 1 2 1 2
lowQualScore : 1 333333 00 000 5 777 333 222222222 5 5 0 4444444444 11 66 66 7 3 7777777777777777777777777777777777777 22222 0 2222222222 0 5 5 22222222222222222222222 6 0 2 4 8 4 0000 00000000000000 444444 3 7777777 0 4 777 4 777 6666666666 0000000000000000000000000 4 888 00 444 4 4 777 4 4 11111 8 3333 4 4 88888 666666666666666 6 1 6 999 8 8 11111 0 0 4 5555555555555555 444 6 3 1 0 5 0 5 3
lowQualScore : . ...... .. ... . ... ... ......... . . . .......... .. .. .. . . ..................................... ..... . .......... . . . ....................... . . . . . . .... .............. ...... . ....... . . ... . ... .......... ......................... . ... .. ... . . ... . . ..... . .... . . ..... ............... . . . ... . . ..... . . . ................ ... . . . . . . . .
lowQualScore : 0 555555 33 000 7 999 666 999999999 7 0 0 9999999999 99 99 00 0 2 4444444444444444444444444444444444444 77777 3 1111111111 1 0 0 55555555555555555555555 5 6 2 4 9 4 6666 44444444444444 444444 9 8888888 1 2 888 4 888 0000000000 4444444444444444444444444 4 888 11 222 4 4 777 3 4 11111 9 9999 4 4 99999 666666666666666 0 7 0 888 5 0 00000 8 8 0 5555555555555555 000 5 0 2 5 5 0 0 7
consensus : TTCACATGTA----CCTTAT--AGTAC---AAA-GT---GTTTTC-AAT---------AT-AGA-A-GTAACAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAAT-AAAGTTATCT-CT--TGAAATTATAACAT-CAT-------T----CA---GAAACTT-GCACGTGT-TT-A-TTCATTAC----TGATAA-AGC----------TTGAG------GAT-TCATAAAACTAAGAAG-AAA-ATGTATCATCATTA---G-AAATAT---CTTCGAA---T---AAGCAAT----------CAA--TGT-T-TT--AGTTCTG-ATGT---TAT-TATAGAGTGGACATTTT-AATAC-GAAATGC-T-CTCATCTTCAA-TT-----ACG-TTTTTACA----G-TATTTAC-AAAATCTTTCTTCCCT-TGAAACGATTGG-C-GCGAATACCTCCCTCTTTCGA-TTTCTAAGTTATGAGCGC-TAATACG-TACTT-TTGTTA---TAAAAGGCTTCTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTT-CNATTCGAANCTTTCC-AATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTG-TTT
Reference ( gi|3 ) : TTCAAATGTG-GT-TCTTAT-TAGTAC---AAA-GT---GTTTTC-AAT---------AT-AGA-A-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAAT-TAAGTTTTGTGTT--TGAAATTATAAC---CAT-------T----CAAC-GAAACTTTGCACATGT-TT-A-TTCATTAC----TGATAATCGC----------TTGAG------GATATCATAAAACTAAGAAG-AAAAATGTGTCATCATTA---G-AAATAT---CTTC-AA---T---AAGCAAT----------CAA--TGT-T-TT--AGTTCTG-ATGT---TAT-CATAGAGTTGGCATTTT-AATAC-GAAATGC-T-CTCATCTTTAA-TT-----ACG-TTTTTACA----G-TATTTAC-AAAATCTTTCTTGCA--TGAAACGA-TGG-T-GCTAGTA-CTCCCTCTTTCGATTTTCTAAGTTATGAGCACTTAATACA-TATTT-TTGT-----TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|2 : TTCAAATGTG-GT-TCTTAT-TAGTAC---AAA-GT---GTTTTC-AAT---------AT-AGA-A-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAAT-TAAGTTTTGTGTT--TGAAATTATAAC---CAT-------T----CAAC-GAAACTTTGCACATGT-TT-A-TTCATTAC----TGATAATCGC----------TTGAG------GATATCATAAAACTAAGAAG-AAAAATGTGTCATCATTA---G-AAATAT---CTTC-AA---T---AAGCAAT----------CAA--TGT-T-TT--AGTTCTG-ATGT---TAT-CATAGAGTTGGCATTTT-AATAC-GAAATGC-T-CTCATCTTTAA-TT-----ACG-TTTTTACA----G-TATTTAC-AAAATCTTTCTTGCA--TGAAACGA-TGG-T-GCTAGTA-CTCCCTCTTTCGATTTTCTAAGTTATGAGCACTTAATACA-TATTT-TTGT-----TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|5 : TTCACACGTATGTACCTTAT--AGTAC---AAA-GT---GTTT-C-AAT---------AT-AGA-A-GT-ACAAT----CAATC-AGTAATATATAAT-AAATGCAT
gi|6 : gcattaaatgggcatacaaTTCACATGTA----CCTTAA--AGTAT---AAAAGT---GTTT-C-AAT---------AT-AGA-AAGTA-CAAT----CAATC-AGTA--ATATGATGAA-TGTATAC-AT-----------TGT-----ATATGT---------GGAACTAAGATTTTA-T-AAAGCTATCTCTT----AAATTATA-C---CAT-------TATTTCA---GAAACTT-GCATGT-T-TT-A-TTCATTAC----TGATAA-AGC----------TTGAG------GAT-TCATAAAACTAAGAA------ATGTATCATCATTA---G-AAATAT---CTTCAAA---T---AAGCAAT----------CAgttttattcattactgataatcttaaaaaaaaaattgaggattcataaaactaagaattagaaatgtatcatcattagaaatatcttcaaataagcaatcatattctacatgtaagttctgtttctcatcttcaattacgtttttacagtatttacaaaatctttcttcccttgaaacaattggccgcgaatacctccctctttcgatttctaacttatgagcgctaattgatacgtttttctttagggttaatgggaaacgcgagatatttttgcaattcaaacttttctaataccgcactgtaaaaagttaattttcctgtattgc
gi|7 : aattcaaattctttattgactgccaccatattggcatatattaacattacacatgatatgcattaaatgggcatacatTTCACATGTA----CCTTAT--AGTAT---AAA-GT---GTTT-C-AAT---------AT-AGA-A-GTA-CAAT----CAATC-AGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGATTTTCATATAAGTTTC---TC--TGGAATTATAACATTCTT-------T----CA---GAAACTT-GCATGT-T-TT-A-TTCATTAC----TGATAA-AGC----------TTGAG------GAT-TCAT-AAACTAAAAAG---AAATGTATCATCATTATAGA-AAATAT---CTTCAAA---T---AAGCAAT----------C-----GTAT-TT--AGTTCTt
gi|1 : ggcatacgtacatcaacagtgaacactacacatgatatgcattaaataggcatacaaTTCACATGT-------TTATGTA-TAC---AAA-GTTT-GTTATA-AACTATCATTTAAT-CGATA-GTTATCA--AA-TAAT--AGTA--ATATAATAAA-TGTATATTATATTATAGATTTTGTTTGCGATGTGTACTCTCATAGAAATTA---TTTCAAT--AAGATCCATACTCTTGAA-TTATA-C---CATATCTTGCT----CAAG-CATACT--GCATTCGT-TT-AATTTATTACGTACTGATAA-AGC----------TTGAG------GAT-TCATAAAATCA-----------T-TAT-ATCATTA---GTAAATATAACCTTC-AAATTTCGGGAGCAATGTCAGAGAATCAAATCGT-TACTGGAGTTCTG-CTCTGAATATGTATAGAGTGGACATTTTTAATACCGAAATGC-TTCTCGTCTTCAAATT-----ACAATTTTTACAA---G-TATTTAC--AAATCTTTTT
gi|12 : tcatttaaattcaatttattttcactttattaatttagagctatggcttgcaccatattggcgactatggctctataaaacattacacattgattatgcattaaggacatactgagaTCACATGTA----CCTTAT--AGTAT---AAA-GT------TTC-AAT---------ATGAGA-A-GTA-CAAT----CAATCTAGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGTATTTAA---AAGTTATCT-CT--TGAA-TTATAAC----AT-------T----CTTCAGAAACTT-GCATGT-T-TT-A-TTCATTAC----TGATAA-AGC----------TTGAG------GAT-TCATAAAAC-AAAAAG-AAATGTACATCATTAATA---G-AAATAT---CTTCAAA---T---AAGCAAT----------CGA----T-T-TT--AGTTCTG-atttccgtatataaaagttttaactatatgccatgaaatacttccacattcctccaatttcttaagt
gi|4 : attaaataggcatacaGTACCTTAAA-GTATAGTTTTTGAAT---------TT-AGA-AAGTA-CAATCAATCAATC-AGTA--ATATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATAAATATCTTA-T-AAAGGCATCTCTT----AAATTATAACAT-TAT-------TT---CA---GAAACCT-GCATGT-T-TT-A-TCTTTCAC----TGAT----GC----------TTGAGTCCTAGGGT-TCACAAAACTAAGAAG-TGA--TTTATCTTCATTA---T-TGATAT---CTTCGAA---T---AAACAAT----------CA---TAT-T-T---AGTTCTG-GTGT---TAT-TATAGAGTGGACATTT---ATAT-------T-T-CTCATCTTCAA-TG-----ACGTTTTTTACATTTTGTTATTTAC-AAAATTTTCCTCCC-------ACGATTGG-TCGCGAATACCTCTCTCTTTCGA-TGTCTAAGTTATGAGCGC-TAATACG-TTATT-TTGT-----TAAAAGGCTTCTTTCTTTAGAGT
gi|19 : tatatagacataaaattgacatA-A-GTA-CAATCAATCAATC-AGTA--ACATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATTAATATT
gi|8 : atcttaaattaaagaT---------GGAACTAAGATTTT-AT-AAAGTTATCT-CT--TG-TATTATAACATTCTT-------T----CA---GAAACTT---GCATGTCTT-A-TTCATT
gi|9 : T-------T----CA---GAAACTTC---CATGT-TTTA-TTCATCAC----TGATAG-AGC----------TTTAG------GAT-TCATAAAACTAAGAAG-AAA--TGTATCATCATTA---G-AAATAT---CTTTGAA---T---AAGCAAT----------C-A--TAC-T-TC---GTTCTG-ATGT---TAC-TATATAGTGAACATTTT-AATAC-GGAAGGCTT-TTCATCTTCAG-TT-----ACA-TTTTCACA----A-TATTTAC-AAAATTTTTCTTCCCT-TGAAACGATTGGCC-ACAAATACCTCCCTCTTTCGA-TTTCTAAATTATGAGCGCTAAATtcatatgtatcatcattagaaatatcttcaaataagcaatcatatttagttctgatgttattatagagtggacattttaatacgaaatgcttttcatcttcaattatgtttttacagtatttaaaaaatctttcttcccttgaaacgattggcccgaatacctccctctttcgatttctcagttataagcactaatatgtat
gi|5 : CATGT-TTTA-TTCATTAC----TGATAATCTTAAAAAAAAAATTGAG------GAT-TCATAAAACTAAGAATTAGAAATGTATCATCATTA---G-AAATAT---CTTC----------AAATAAG----------CAA----T-C-AT--A-TTCTACATGT-----------AAGTT--C-TGTT---------------T-CTCATCTTCAA-TT-----ACG-TTTTTACA----G-TATTTAC-AAAATCTTTCTTCCCT-TGAAACAATTGGCC-GCGAATACCTCCCTCTTTCGA-TTTCTAACTTATGAGCGC-TAATTGA-TA-----CGT-----T------TTTCT----TTAGGGTT-AATGGGAAACG-CGAGATATTTTT-GCAATTCAAACTTTTCTAATACCGCACTGTAAAAAGTTAATTTTC-CTGTATTG
gi|8 : gcattaaatgggcatacaattcacacgtatgtaccttatagtacaaagtgtttcaatatagaagtacaatcaatcagtaatatataataaatgATGTATCATCATTA---G-AAATAT---CTTC-AAA--T---AAGCAAT----------CA---TAT-T-T---AGTTCTG-ATGT---TAT-TATAGAGTGGACATTTT-AATAC-GAAATGCTT-TTCATCTTCAA-TT-----ATG-TTTTTACA----G-TATTTAA-AAAATCTTTCTTCCCT-TGAAACGATTGG-C-CCGAATACCTCCCTCTTTCGA-TTTCTCAGTTATAAGCAC-TAATATG-TATc
gi|11 : tggaactaagattttataaagttatctcttgtattataacattctttcagaaacttgcatgtcttattcatttcatGTTCTG-ATGT---TAT-TACAGAGTGGCCATTTT-AATAC-GAAATGCTT-CTCATCTTCAA--T-----ACG-TTTTTACA----G-TATTC-C-AAAATCTTTCTTCCCCTTGAAATGATTGG-C-ACGAATACCTCCCTCTTTCGATTCTC-AAGTTATGAGCGC-TAATATGTTACTTGTTATTA---TAAAAGGCTTCTTTCTTTAGGATT----------------AATATTTTG-CAATTCCAACCTTTCC-AATACCGTACTGT--AAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|10 : gTTCTG-ATGT---TAT-TACAGAGTGGCCATTTT-AATAC-GAAATGC-TTCTCATCTTCAA-TT-----ACG-TTTTTACA----G-TATTTAC-AAAATCTTTCTTCCCT-TGAAATGATTGG-CAGCGAATACCTCCCTCTTTCGA-TTTCTAAGTTATGAGCGC-TAATATG-TACTT-TTGTTATTATAAAAGGCTTCTTTCTTTAGGATT----------------AATATTTTTGCAATTCAAACCTTTCC-AATACCGTACTGT-AAAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|16 : ATAGAGTGGACATTTT-ATTAT-GAACTGC-TTCTCATATTCAA-TTAAATTACG-TTTTTACA----G-TATTTACAAAAATCTTTCTTCCCT-TAAAACGA-T
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTTAAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACACATGGTATGCATTAAATGGGCATACAATCAAAATATAACAATTCTAAAACCATGCCATGCAGCATCCTTCATTTGTAACAAAAGAAACTATTTTCAGTACAAGTTTCTC
Unaligned ( gi|14 ): ATTCAAATTCTGTATTGATTCCACCACATTGGCATACATCAACATAGTATTACAACATAAATGTAACAGACAAGCAGTACAGGTATCTTATATACAAGCACAGTTAGACATTT
Unaligned ( gi|15 ): TTTCTAATCTTCAATTCCATATTTACAATATCTTTTTTCTCTTGCTATATTTGGATGTGCATATCTACCAGTATCAATATCTAATTAGTTAGCACTGACACACATTTTT
Unaligned ( gi|17 ): AAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACATATGATATGCATACAATTCACATTTTCAATTCACAT
Unaligned ( gi|18 ): AAATCCAAATTCTTTGTTGACTTTCCATCAACACTACACATGATATACATGTATTAAATGGATATACAATTCACATGTACTTT
Unaligned ( gi|20 ): ATTTCAAATTGCTTTATTGAACTTCCACCATATTGGCATATATCAGCATTTACACATACATGCATT
Unaligned ( gi|21 ): AATCCTTTCAATCATTGAAGGTCCCATATTGCATACGTACATACAGTGAAACATCTACACGATAT
Alignments
lowQualScore : 1111 111 1 2222222222222222 2 3333 11 11 4444444444444444444444444444444444444 1111 1 11 11 2 222222222222 111111 1 11111 1 11111 3333333333333333333 111 1111 1111111 1 333333 4444444444444444 1 1 2 1 1 2
lowQualScore : 0000 444 0 5 5 7777777777777777 3 66 5 8 1 4444 11 66 00 1 3333333333333333333333333333333333333 2222 88 5 0 2 3 66 33 3 66 8 22 66 8 2 5 4 8888 777777777777 111111 2 0 777 99999 2 777 77777 55 777 3 00000 2222222222222222222 4 777 777 4 4 4 222 3 3 99999 3 3 3 7777 3 3 666 3 0000 1111111 3 6 4 4 1 777 8 4 4 8 5 4 5 333333 7 3333333333333333 6 1 1 1 6 1 0 0 0 0
lowQualScore : .... ... . . . ................ . .. . . . .... .. .. .. . ..................................... .... .. . . . . .. .. . .. . .. .. . . . . .... ............ ...... . . ... ..... . ... ..... .. ... . ..... ................... . ... ... . . . ... . . ..... . . . .... . . ... . .... ....... . . . . . ... . . . . . . . ...... . ................ . . . . . . . . . .
lowQualScore : 6666 666 0 0 0 2222222222222222 2 99 0 9 1 9999 11 11 11 9 9999999999999999999999999999999999999 0000 66 0 0 5 2 99 22 8 11 9 22 11 0 8 0 0 5555 666666666666 555555 0 8 000 99999 5 000 66666 55 000 9 00000 1111111111111111111 4 111 888 4 0 0 888 6 6 11111 6 6 6 7777 6 6 444 6 7777 8888888 6 0 0 0 6 000 0 0 4 9 0 0 7 333333 3 0000000000000000 0 0 4 0 0 4 4 0 0 0
consensus : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCATGT-TTTA-TTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CT-CATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTG---T-ATAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
Reference ( family-2542 ) : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAACAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCAT--T-CA--G--AAACTT-GCACGTGTTTA-TTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CT-CATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TACTT-TTG---TTATAAAAGGCTTCTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTT-CNATTCGAANCTTTCC-AATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTG-TTT
gi|1 : TTCACA----TGT-----TTAT-GTATACAAA-GTTTGTTATAAACTATCATTTAATCGAT-AG---TTATCAA---A-TAAT--AGTA--ATATAAT-AAATGTATATTATATTATAGATTTTGTTTGCGATGTGTACTCTCATAGAAATTA---TTTCAATA-AGATCCATACT-CTTGAA-TTATACCATA-TCTTGCT-CA--AGCATACT--GCATTCGTTTAATTTATTACGTACTGATAA-----------AGCTTGAG------GAT-TCATAAAATCA----------T-TAT-ATCAT---TA---GTAAAT--ATAACCTTCAAATTTCGGGAGCAATGTCAGAGAATCAAATCGT-TACTGGAGTTCTGCTCTGAATATGTATAGAGTGGACATTTTTAATACCGAAATGCTT-CT-CGTCTTCAAATT-----ACAATTTTT-ACAA----GT-ATTTAC--AAATCTTTTTATTT-CCGTATATAAAAGTTTTAACTATATGC-C-ATGAAATACTTCCACATTCCTCCAA-TTTCTTAAGT
gi|10 : tcatttaaattcaatttattttcactttattaatttagagctatggcttgcaccatattggcgactatggctctataaaacattacacattgattatgcattaaggacatactgagaTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGC-TTCT-CATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AATGAT-TGG-CAGCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATATG-TACTT-TTGTTATTATAAAAGGCTTCTTTCTTTAGGATT-A---------------ATATTTTTGCAATTCAAACCTTTCC-AATACCGTACTGT-AAAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|11 : GTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGCTT-CT-CATCTTC-AA-T-----AC-GTTTTT-AC-A----GT-ATTC-C-AAAATCTTT---CTTCCCCT---TGA-------AATGAT-TGG-C-ACG-AATACCTCC---CTCTTTCGA-TTCT-CAAGTTA-TGAGCGC-TAATATGTTACTTGTTA---TTATAAAAGGCTTCTTTCTTTAGGATT-A---------------ATATTTTG-CAATTCCAACCTTTCC-AATACCGTACTGT--AAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|12 : gTCACA----TGTA--CCTTAT-A-GTATAAA-GT----------------TTCAAT--ATGAGAA-GTA-CAAT----CAATCTAGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGTATTTAA---AAGTT-AT-CT-CTTGAA-TTATA--ACA-TTCT--T-CA--G--AAACTT-GCATGT-TTTA-TTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAAC-AAAAAG--AAATGTA-CATCATTAATA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------CGA----T-T-TT--AGTTCTG
gi|15 : attaaataggcataca-T-CT-AATCTTC-AATT-----CC-AT----------------ATTTAC-AATATCTTT---TTT-CTCT---TGC-------TATATT-TGGAT-GTG-CATATCTAC---CAGTATCAA-TATC-TAA-TTAGTTAGCAC-TGACACA-CATTT-TT
gi|16 : ttATAGAGTGGACA-TTTTATTA-TGAACTGC-TTCT-CATATTC-AATTAAATTAC-GTTTTT-AC-A----GT-ATTTACAAAAATCTTT---CTT-CCCT---TAA-------AACGAT-
gi|19 : AA-GTA-CAATCAATCAATC-AGTA--ACATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATTAATATT
gi|2 : atcttaaattaaagaTTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCACATGTTTA-TTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CT-CATCTTT-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTG---T--TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|3 : TTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCACATGTTTA-TTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CT-CATCTTT-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTG---T--TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|4 : TTGACA----TGTA--CCTTAA-A-GTATA---GT---TT-----------TTGAAT--TT-AGAAAGTA-CAATCAATCAATC-AGTA--ATATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATAAATATCTTA-TA-AAGGC-AT-CT-CTT-AAATTATA--ACA-TTAT--TTCA--G--AAACCT-GCATGT-TTTA-TCTTTCAC----TGAT--------------GCTTGAGTCCTAGGGT-TCACAAAACTAAGAAG-TGA-TTTATCTTCAT---TA---T-TGAT--AT---CTTCGAAT-----AAACAAT----------CA---TAT-T-T---AGTTCTGGTGT---TAT-TATAGAGTGGACA-TTT--ATA-T------T-T-CT-CATCTTC-AATG-----AC-GTTTTTTAC-ATTTTGTTATTTAC-AAAAT-TTT---CCT-CCC---------------ACGAT-TGGTC-GCG-AATACCTCT---CTCTTTCGA-TGTC-TAAGTTA-TGAGCGC-TAATACG-TTATT-TTG---T--TAAAAGGCTTCTTTCTTTAGAGT
gi|5 : tatatagacataaaaTTCACACGTATGTA--CCTTAT-A-GTACAAA-GT--G-T-----------TTCAAT--AT-AGAA-GT-ACAAT----CAATC-AGTAATATATAAT-AAATGCAT
gi|5 : gcattaaatgggcatacaaT-GCATGT-TTTA-TTCATTAC----TGATAATCTTAAAAAAAAAATTGAG------GAT-TCATAAAACTA---AG-AA------------T---TA---G-AAATGTAT---CATC--AT-----TAGAAAT------------A--TCT-T-CA--AAT----AAGC---AAT-CATAT--TCTACA-TGTAAGTT-C----TGT-TTCT-CATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACAAT-TGGCC-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAACTTA-TGAGCGC-TAA-----------TTG-----ATA-----CGTTTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTTGCAATTCAAACTTTTCT-AATACCGCACTGT-AAAAAGTTAATTTTCCTGTATTGgttttattcattactgataatcttaaaaaaaaaattgaggattcataaaactaagaattagaaatgtatcatcattagaaatatcttcaaataagcaatcatattctacatgtaagttctgtttctcatcttcaattacgtttttacagtatttacaaaatctttcttcccttgaaacaattggccgcgaatacctccctctttcgatttctaacttatgagcgctaattgatacgtttttctttagggttaatgggaaacgcgagatatttttgcaattcaaacttttctaataccgcactgtaaaaagttaattttcctgtattgc
gi|6 : gcattaaatgggcatacaattcacacgtatgtaccttatagtacaaagtgtttcaatatagaagtacaatcaatcagtaatatataataaaTTCACA----TGTA--CCTTAA-A-GTATAAAAGT--GTT-----------T-CAAT--AT-AGAAAGTA-CAAT----CAATC-AGTA--ATATGATGAA-TGTATAC-AT-----------TGT-----ATATGT---------GGAACTAAGATTTTA-TA-AAGCT-AT-CT-CTT-AAATTATA--CCA-TTAT--TTCA--G--AAACTT-GCATGT-TTTA-TTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAG-----AAATGTATCATCAT---TA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------CAc
gi|7 : aattcaaattctttattgactgccaccatattggcatatattaacattacacatgatatgcattaaatgggcatacatTTCACA----TGTA--CCTTAT-A-GTATAAA-GT--GTT-----------T-CAAT--AT-AGAA-GTA-CAAT----CAATC-AGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGATTTTCATATAAGTT--T-CT-CT-GGAATTATA--ACATTCTT--T-CA--G--AAACTT-GCATGT-TTTA-TTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCAT-AAACTAAAAAG--AAATGTATCATCAT---TATAGA-AAAT--AT---CTTCAAAT-----AAGCAAT----------C-----GTAT-TT--AGTTCTt
gi|8 : ggcatacgtacatcaacagtgaacactacacatgatatgcattaaataggcatacaaT---------GGAACTAAGATTTTA-TA-AAGTT-AT-CT-CTTG-TATTATA--ACATTCTT--T-CA--G--AAACTT-GCATGT-CTTA-TTCATT------TCATA----------------TG----------TATCAT--CATT----AG-AAA---TATCTTC------------AAAT--A------------------AGCAAT----------C-A--TA--T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGCTT-TT-CATCTTC-AATT-----AT-GTTTTT-AC-A----GT-ATTTAA-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-CCG-AATACCTCC---CTCTTTCGA-TTTC-TCAGTTA-TAAGCAC-TAATATG-TA
gi|9 : T--T-CA--G--AAACTT-CCATGT-TTTA-TTCATCAC----TGATAG-----------AGCTTTAG------GAT-TCATAAAACTAAGAAG-AAA-TGTATCATCAT---TA---G-AAAT--AT---CTTTGAAT-----AAGCAAT----------CA---TAC-T-TC---GTTCTGATGT---TAC-TATATAGTGAACA-TTTTAATA-CGGAAGGC-T-TTTCATCTTC-AGTT-----AC-ATTTTC-AC-A----AT-ATTTAC-AAAATTTTT---CTT-CCCT---TGA-------AACGAT-TGGCC-ACA-AATACCTCC---CTCTTTCGA-TTTC-TAAATTA-TGAGCGC-TAAt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACACATGGTATGCATTAAATGGGCATACAATCAAAATATAACAATTCTAAAACCATGCCATGCAGCATCCTTCATTTGTAACAAAAGAAACTATTTTCAGTACAAGTTTCTC
Unaligned ( gi|14 ): ATTCAAATTCTGTATTGATTCCACCACATTGGCATACATCAACATAGTATTACAACATAAATGTAACAGACAAGCAGTACAGGTATCTTATATACAAGCACAGTTAGACATTT
Unaligned ( gi|17 ): AAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACATATGATATGCATACAATTCACATTTTCAATTCACAT
Unaligned ( gi|18 ): AAATCCAAATTCTTTGTTGACTTTCCATCAACACTACACATGATATACATGTATTAAATGGATATACAATTCACATGTACTTT
Unaligned ( gi|20 ): ATTTCAAATTGCTTTATTGAACTTCCACCATATTGGCATATATCAGCATTTACACATACATGCATT
Unaligned ( gi|21 ): AATCCTTTCAATCATTGAAGGTCCCATATTGCATACGTACATACAGTGAAACATCTACACGATAT
Alignments
lowQualScore : 1111 111 1 2222222222222222 1 3333 11 11 4444444444444444444444444444444444444 1111 1 11 11 222222222222 111111 1 22 1 11111 3333333333333333333 111 1111 1111111 1 333333 2222222222222222 1 2 2 1 1 1
lowQualScore : 0000 444 0 5 5 7777777777777777 3 66 5 8 3 4444 11 66 00 1 3333333333333333333333333333333333333 2222 88 5 0 2 3 66 33 1 66 8 22 66 8 55 8 8888 777777777777 111111 2 0 777 11 5 2 777 77777 55 777 3 00000 1111111111111111111 4 777 777 4 4 4 666 3 99999 3 3 3 7777 3 3 666 3 0000 1111111 3 6 4 4 1 777 8 4 4 8 5 1 5 555555 7 9999999999999999 0 1 1 0 1 0 0 0 5
lowQualScore : .... ... . . . ................ . .. . . . .... .. .. .. . ..................................... .... .. . . . . .. .. . .. . .. .. . .. . .... ............ ...... . . ... .. . . ... ..... .. ... . ..... ................... . ... ... . . . ... . ..... . . . .... . . ... . .... ....... . . . . . ... . . . . . . . ...... . ................ . . . . . . . . .
lowQualScore : 6666 666 0 0 0 2222222222222222 2 99 0 9 3 9999 11 11 11 9 9999999999999999999999999999999999999 0000 66 0 0 5 2 99 22 0 11 9 22 11 0 55 0 5555 666666666666 555555 0 8 000 11 6 5 000 66666 55 000 9 00000 5555555555555555555 4 111 888 4 0 0 555 6 11111 6 6 6 7777 6 6 444 6 7777 8888888 6 0 0 0 6 000 0 0 4 9 0 0 7 555555 3 8888888888888888 0 4 4 0 4 4 0 0 5
consensus : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTG----TATAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
Reference ( family-2542 ) : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTG----TATAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
gi|1 : TTCACA----TGT-----TTAT-GTATACAAA-GTTTGTTATAAACTATCATTTAATCGAT-AG---TTATCAA---A-TAAT--AGTA--ATATAAT-AAATGTATATTATATTATAGATTTTGTTTGCGATGTGTACTCTCATAGAAATTA---TTTCAATA-AGATCCATACT-CTTGAA-TTATACCATA-TCTTGCT-CA--AGCATACT--GCATTCGT-TTAATTTATTACGTACTGATAA-----------AGCTTGAG------GAT-TCATAAAATCA----------T-TAT-ATCAT---TA---GTAAAT--ATAACCTTCAAATTTCGGGAGCAATGTCAGAGAATCAAATCGT-TACTGGAGTTCTGCTCTGAATATGTATAGAGTGGACATTTTTAATACCGAAATGCTT-CTCGTCTTCAAATT-----ACAA-TTTTTACAA----G-TATTTAC--AAATCTTTTTATTT-CCGTATATAAAAGTTTTAACTATATGC-C-ATGAAATACTTCCACATTCCTCCAA-TTTCTTAAGT
gi|10 : tcatttaaattcaatttattttcactttattaatttagagctatggcttgcaccatattggcgactatggctctataaaacattacacattgattatgcattaaggacatactgagaTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGC-TTCTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AATGAT-TGG-CAGCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATATG-TACTT-TTGTTATTATAAAAGGCTTCTTTCTTTAGGATT----------------AATATTTTTGCAATTCAAACCTTTCC-AATACCGTACTGT-AAAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|11 : GTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGCTT-CTCATCTTC-AA-T-----AC-G-TTTTTAC-A----G-TATTC-C-AAAATCTTT---CTTCCCCT---TGA-------AATGAT-TGG-C-ACG-AATACCTCC---CTCTTTCGA-TTCT-CAAGTTA-TGAGCGC-TAATATGTTACTTGTTAT---TATAAAAGGCTTCTTTCTTTAGGATT-AATA----------------TTTTGCAATTCCAACCTTTCC-AATACCGTACTGT--AAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|12 : gTCACA----TGTA--CCTTAT-A-GTATAAA-GT----------------TTCAAT--ATGAGAA-GTA-CAAT----CAATCTAGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGTATTTAA---AAGTT-AT-CT-CTTGAA-TTATA--ACA-TTCT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAAC-AAAAAG--AAATGTA-CATCATTAATA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------CGA----T-T-TT--AGTTCTG
gi|15 : attaaataggcataca-T-CTAATCTTC-AATT-----CC-A-T---------------ATTTAC-AATATCTTT---TTT-CTCT---TGC-------TATATT-TGGAT-GTG-CATATCTAC---CAGTATCAA-TATC-TAA-TTAGTTAGCAC-TGACACA-CATTT-TT
gi|16 : ttATAGAGTGGACA-TTTTATTA-TGAACTGC-TTCTCATATTC-AATTAAATTAC-G-TTTTTAC-A----G-TATTTACAAAAATCTTT---CTT-CCCT---TAA-------AACGAT-
gi|19 : AA-GTA-CAATCAATCAATC-AGTA--ACATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATTAATATT
gi|2 : atcttaaattaaagaTTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCAC--ATGTTTATTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CTCATCTTT-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTG----T-TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|3 : TTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCAC--ATGTTTATTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CTCATCTTT-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTG----T-TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|4 : TTGACA----TGTA--CCTTAA-A-GTATA---GT---TT-----------TTGAAT--TT-AGAAAGTA-CAATCAATCAATC-AGTA--ATATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATAAATATCTTA-TA-AAGGC-AT-CT-CTT-AAATTATA--ACA-TTAT--TTCA--G--AAACCT-GCAT--GT-TTTATCTTTCAC----TGAT--------------GCTTGAGTCCTAGGGT-TCACAAAACTAAGAAG-TGA-TTTATCTTCAT---TA---T-TGAT--AT---CTTCGAAT-----AAACAAT----------CA---TAT-T-T---AGTTCTGGTGT---TAT-TATAGAGTGGACA-TTT--ATA-T------T-T-CTCATCTTC-AATG-----AC-GTTTTTTAC-ATTTTGTTATTTAC-AAAAT-TTT---CCT-CCC---------------ACGAT-TGGTC-GCG-AATACCTCT---CTCTTTCGA-TGTC-TAAGTTA-TGAGCGC-TAATACG-TTATT-TTG----T-TAAAAGGCTTCTTTCTTTAGAGT
gi|5 : tatatagacataaaaTTCACACGTATGTA--CCTTAT-A-GTACAAA-GT--G-T-----------TTCAAT--AT-AGAA-GTA-CAAT----CAATC-AGTAATATATAAT-AAATGCAT
gi|5 : gcattaaatgggcatacaaT-GCAT--GT-TTTATTCATTAC----TGATAATCTTAAAAAAAAAATTGAG------GAT-TCATAAAACTA---AG-AA------------T---TA---G-AAATGTAT---CATC--AT-----TAGAAAT------------A--TCT-T-CA--AAT----AAGC---AAT-CATAT--TCTACA-TGTAAGTT-C----TGT-TTCTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACAAT-TGGCC-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAACTTA-TGAGCGC-TAA-----------TTG-----ATA-----CGTTTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTTGCAATTCAAACTTTTCT-AATACCGCACTGT-AAAAAGTTAATTTTCCTGTATTGgttttattcattactgataatcttaaaaaaaaaattgaggattcataaaactaagaattagaaatgtatcatcattagaaatatcttcaaataagcaatcatattctacatgtaagttctgtttctcatcttcaattacgtttttacagtatttacaaaatctttcttcccttgaaacaattggccgcgaatacctccctctttcgatttctaacttatgagcgctaattgatacgtttttctttagggttaatgggaaacgcgagatatttttgcaattcaaacttttctaataccgcactgtaaaaagttaattttcctgtattgc
gi|6 : gcattaaatgggcatacaattcacacgtatgtaccttatagtacaaagtgtttcaatatagaagtacaatcaatcagtaatatataataaaTTCACA----TGTA--CCTTAA-A-GTATAAAAGT--GTT-----------T-CAAT--AT-AGAAAGTA-CAAT----CAATC-AGTA--ATATGATGAA-TGTATAC-AT-----------TGT-----ATATGT---------GGAACTAAGATTTTA-TA-AAGCT-AT-CT-CTT-AAATTATA--CCA-TTAT--TTCA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAG-----AAATGTATCATCAT---TA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------CAc
gi|7 : aattcaaattctttattgactgccaccatattggcatatattaacattacacatgatatgcattaaatgggcatacatTTCACA----TGTA--CCTTAT-A-GTATAAA-GT--GTT-----------T-CAAT--AT-AGAA-GTA-CAAT----CAATC-AGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGATTTTCATATAAGTT--T-CT-C-TGGAATTATA--ACATTCTT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCAT-AAACTAAAAAG--AAATGTATCATCAT---TATAGA-AAAT--AT---CTTCAAAT-----AAGCAAT----------C-----GTAT-TT--AGTTCTt
gi|8 : ggcatacgtacatcaacagtgaacactacacatgatatgcattaaataggcatacaaT---------GGAACTAAGATTTTA-TA-AAGTT-AT-CT-CTTG-TATTATA--ACATTCTT--T-CA--G--AAACTT-GCAT--GT-CTTATTCATT------TCATA----------------TG----------TATCAT--CATT----AG-AAA---TATCTTC------------AAAT--A------------------AGCAAT----------C-A--TA--T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGCTT-TTCATCTTC-AATT-----AT-G-TTTTTAC-A----G-TATTTAA-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-CCG-AATACCTCC---CTCTTTCGA-TTTC-TCAGTTA-TAAGCAC-TAATATG-TAT
gi|9 : T--T-CA--G--AAACTT-CCAT--GT-TTTATTCATCAC----TGATAG-----------AGCTTTAG------GAT-TCATAAAACTAAGAAG--AAATGTATCATCAT---TA---G-AAAT--AT---CTTTGAAT-----AAGCAAT----------C-A--TAC-T-TC---GTTCTGATGT---TAC-TATATAGTGAACA-TTTTAATA-CGGAAGGCTT-TTCATCTTC-AGTT-----AC-A-TTTTCAC-A----A-TATTTAC-AAAATTTTT---CTT-CCCT---TGA-------AACGAT-TGGCC-ACA-AATACCTCC---CTCTTTCGA-TTTC-TAAATTA-TGAGCGC-TAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACACATGGTATGCATTAAATGGGCATACAATCAAAATATAACAATTCTAAAACCATGCCATGCAGCATCCTTCATTTGTAACAAAAGAAACTATTTTCAGTACAAGTTTCTC
Unaligned ( gi|14 ): ATTCAAATTCTGTATTGATTCCACCACATTGGCATACATCAACATAGTATTACAACATAAATGTAACAGACAAGCAGTACAGGTATCTTATATACAAGCACAGTTAGACATTT
Unaligned ( gi|17 ): AAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACATATGATATGCATACAATTCACATTTTCAATTCACAT
Unaligned ( gi|18 ): AAATCCAAATTCTTTGTTGACTTTCCATCAACACTACACATGATATACATGTATTAAATGGATATACAATTCACATGTACTTT
Unaligned ( gi|20 ): ATTTCAAATTGCTTTATTGAACTTCCACCATATTGGCATATATCAGCATTTACACATACATGCATT
Unaligned ( gi|21 ): AATCCTTTCAATCATTGAAGGTCCCATATTGCATACGTACATACAGTGAAACATCTACACGATAT
Alignments
lowQualScore : 1111 111 1 2222222222222222 1 3333 11 11 4444444444444444444444444444444444444 1111 1 11 11 222222222222 111111 1 22 1 11111 3333333333333333333 111 1111 1111111 1 333333 2222222222222222 1 2 2 1 1 1
lowQualScore : 0000 444 0 5 5 7777777777777777 3 66 5 8 3 4444 11 66 00 1 3333333333333333333333333333333333333 2222 88 5 0 2 3 66 33 1 66 8 22 66 8 55 8 8888 777777777777 111111 2 0 777 11 5 2 777 77777 55 777 3 00000 1111111111111111111 4 777 777 4 4 4 666 3 99999 3 3 3 7777 3 3 666 3 0000 1111111 3 6 4 4 1 777 8 4 4 8 5 1 5 555555 7 9999999999999999 0 1 1 0 1 0 0 0 5
lowQualScore : .... ... . . . ................ . .. . . . .... .. .. .. . ..................................... .... .. . . . . .. .. . .. . .. .. . .. . .... ............ ...... . . ... .. . . ... ..... .. ... . ..... ................... . ... ... . . . ... . ..... . . . .... . . ... . .... ....... . . . . . ... . . . . . . . ...... . ................ . . . . . . . . .
lowQualScore : 6666 666 0 0 0 2222222222222222 2 99 0 9 3 9999 11 11 11 9 9999999999999999999999999999999999999 0000 66 0 0 5 2 99 22 0 11 9 22 11 0 55 0 5555 666666666666 555555 0 8 000 11 6 5 000 66666 55 000 9 00000 5555555555555555555 4 111 888 4 0 0 555 6 11111 6 6 6 7777 6 6 444 6 7777 8888888 6 0 0 0 6 000 0 0 4 9 0 0 7 555555 3 8888888888888888 0 4 4 0 4 4 0 0 5
consensus : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTG----TATAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
Reference ( family-2542 ) : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTG----TATAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
gi|1 : TTCACA----TGT-----TTAT-GTATACAAA-GTTTGTTATAAACTATCATTTAATCGAT-AG---TTATCAA---A-TAAT--AGTA--ATATAAT-AAATGTATATTATATTATAGATTTTGTTTGCGATGTGTACTCTCATAGAAATTA---TTTCAATA-AGATCCATACT-CTTGAA-TTATACCATA-TCTTGCT-CA--AGCATACT--GCATTCGT-TTAATTTATTACGTACTGATAA-----------AGCTTGAG------GAT-TCATAAAATCA----------T-TAT-ATCAT---TA---GTAAAT--ATAACCTTCAAATTTCGGGAGCAATGTCAGAGAATCAAATCGT-TACTGGAGTTCTGCTCTGAATATGTATAGAGTGGACATTTTTAATACCGAAATGCTT-CTCGTCTTCAAATT-----ACAA-TTTTTACAA----G-TATTTAC--AAATCTTTTTATTT-CCGTATATAAAAGTTTTAACTATATGC-C-ATGAAATACTTCCACATTCCTCCAA-TTTCTTAAGT
gi|10 : tcatttaaattcaatttattttcactttattaatttagagctatggcttgcaccatattggcgactatggctctataaaacattacacattgattatgcattaaggacatactgagaTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGC-TTCTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AATGAT-TGG-CAGCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATATG-TACTT-TTGTTATTATAAAAGGCTTCTTTCTTTAGGATT----------------AATATTTTTGCAATTCAAACCTTTCC-AATACCGTACTGT-AAAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|11 : GTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGCTT-CTCATCTTC-AA-T-----AC-G-TTTTTAC-A----G-TATTC-C-AAAATCTTT---CTTCCCCT---TGA-------AATGAT-TGG-C-ACG-AATACCTCC---CTCTTTCGA-TTCT-CAAGTTA-TGAGCGC-TAATATGTTACTTGTTAT---TATAAAAGGCTTCTTTCTTTAGGATT-AATA----------------TTTTGCAATTCCAACCTTTCC-AATACCGTACTGT--AAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|12 : gTCACA----TGTA--CCTTAT-A-GTATAAA-GT----------------TTCAAT--ATGAGAA-GTA-CAAT----CAATCTAGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGTATTTAA---AAGTT-AT-CT-CTTGAA-TTATA--ACA-TTCT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAAC-AAAAAG--AAATGTA-CATCATTAATA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------CGA----T-T-TT--AGTTCTG
gi|15 : attaaataggcataca-T-CTAATCTTC-AATT-----CC-A-T---------------ATTTAC-AATATCTTT---TTT-CTCT---TGC-------TATATT-TGGAT-GTG-CATATCTAC---CAGTATCAA-TATC-TAA-TTAGTTAGCAC-TGACACA-CATTT-TT
gi|16 : ttATAGAGTGGACA-TTTTATTA-TGAACTGC-TTCTCATATTC-AATTAAATTAC-G-TTTTTAC-A----G-TATTTACAAAAATCTTT---CTT-CCCT---TAA-------AACGAT-
gi|19 : AA-GTA-CAATCAATCAATC-AGTA--ACATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATTAATATT
gi|2 : atcttaaattaaagaTTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCAC--ATGTTTATTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CTCATCTTT-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTG----T-TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|3 : TTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT-AA-CAAT--AGTA--ATATAATAAAATGTATACCAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCAC--ATGTTTATTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CTCATCTTT-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTG----T-TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|4 : TTGACA----TGTA--CCTTAA-A-GTATA---GT---TT-----------TTGAAT--TT-AGAAAGTA-CAATCAATCAATC-AGTA--ATATAA-GAAATGTATACT-T-----------TAT-----ATATGT---------GAAATAAATATCTTA-TA-AAGGC-AT-CT-CTT-AAATTATA--ACA-TTAT--TTCA--G--AAACCT-GCAT--GT-TTTATCTTTCAC----TGAT--------------GCTTGAGTCCTAGGGT-TCACAAAACTAAGAAG-TGA-TTTATCTTCAT---TA---T-TGAT--AT---CTTCGAAT-----AAACAAT----------CA---TAT-T-T---AGTTCTGGTGT---TAT-TATAGAGTGGACA-TTT--ATA-T------T-T-CTCATCTTC-AATG-----AC-GTTTTTTAC-ATTTTGTTATTTAC-AAAAT-TTT---CCT-CCC---------------ACGAT-TGGTC-GCG-AATACCTCT---CTCTTTCGA-TGTC-TAAGTTA-TGAGCGC-TAATACG-TTATT-TTG----T-TAAAAGGCTTCTTTCTTTAGAGT
gi|5 : tatatagacataaaaTTCACACGTATGTA--CCTTAT-A-GTACAAA-GT--G-T-----------TTCAAT--AT-AGAA-GTA-CAAT----CAATC-AGTAATATATAAT-AAATGCAT
gi|5 : gcattaaatgggcatacaaT-GCAT--GT-TTTATTCATTAC----TGATAATCTTAAAAAAAAAATTGAG------GAT-TCATAAAACTA---AG-AA------------T---TA---G-AAATGTAT---CATC--AT-----TAGAAAT------------A--TCT-T-CA--AAT----AAGC---AAT-CATAT--TCTACA-TGTAAGTT-C----TGT-TTCTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACAAT-TGGCC-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAACTTA-TGAGCGC-TAA-----------TTG-----ATA-----CGTTTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTTGCAATTCAAACTTTTCT-AATACCGCACTGT-AAAAAGTTAATTTTCCTGTATTGgttttattcattactgataatcttaaaaaaaaaattgaggattcataaaactaagaattagaaatgtatcatcattagaaatatcttcaaataagcaatcatattctacatgtaagttctgtttctcatcttcaattacgtttttacagtatttacaaaatctttcttcccttgaaacaattggccgcgaatacctccctctttcgatttctaacttatgagcgctaattgatacgtttttctttagggttaatgggaaacgcgagatatttttgcaattcaaacttttctaataccgcactgtaaaaagttaattttcctgtattgc
gi|6 : gcattaaatgggcatacaattcacacgtatgtaccttatagtacaaagtgtttcaatatagaagtacaatcaatcagtaatatataataaaTTCACA----TGTA--CCTTAA-A-GTATAAAAGT--GTT-----------T-CAAT--AT-AGAAAGTA-CAAT----CAATC-AGTA--ATATGATGAA-TGTATAC-AT-----------TGT-----ATATGT---------GGAACTAAGATTTTA-TA-AAGCT-AT-CT-CTT-AAATTATA--CCA-TTAT--TTCA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAG-----AAATGTATCATCAT---TA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------CAc
gi|7 : aattcaaattctttattgactgccaccatattggcatatattaacattacacatgatatgcattaaatgggcatacatTTCACA----TGTA--CCTTAT-A-GTATAAA-GT--GTT-----------T-CAAT--AT-AGAA-GTA-CAAT----CAATC-AGTA--ATGTAATAAAGTGT-----------------------------------------GGAACTAAGATTTTCATATAAGTT--T-CT-C-TGGAATTATA--ACATTCTT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCAT-AAACTAAAAAG--AAATGTATCATCAT---TATAGA-AAAT--AT---CTTCAAAT-----AAGCAAT----------C-----GTAT-TT--AGTTCTt
gi|8 : ggcatacgtacatcaacagtgaacactacacatgatatgcattaaataggcatacaaT---------GGAACTAAGATTTTA-TA-AAGTT-AT-CT-CTTG-TATTATA--ACATTCTT--T-CA--G--AAACTT-GCAT--GT-CTTATTCATT------TCATA----------------TG----------TATCAT--CATT----AG-AAA---TATCTTC------------AAAT--A------------------AGCAAT----------C-A--TA--T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGCTT-TTCATCTTC-AATT-----AT-G-TTTTTAC-A----G-TATTTAA-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-CCG-AATACCTCC---CTCTTTCGA-TTTC-TCAGTTA-TAAGCAC-TAATATG-TAT
gi|9 : T--T-CA--G--AAACTT-CCAT--GT-TTTATTCATCAC----TGATAG-----------AGCTTTAG------GAT-TCATAAAACTAAGAAG--AAATGTATCATCAT---TA---G-AAAT--AT---CTTTGAAT-----AAGCAAT----------C-A--TAC-T-TC---GTTCTGATGT---TAC-TATATAGTGAACA-TTTTAATA-CGGAAGGCTT-TTCATCTTC-AGTT-----AC-A-TTTTCAC-A----A-TATTTAC-AAAATTTTT---CTT-CCCT---TGA-------AACGAT-TGGCC-ACA-AATACCTCC---CTCTTTCGA-TTTC-TAAATTA-TGAGCGC-TAA
blockSeqs : CGTA GGT T . A GTT T . G A A CAAT CT AT TA A CATTGTATATGT ATAT A . G G A . AT C . T AC . T . G . TCTTAAAAAAAA TCCTAG A AAA AA A G TAA TAGA GT . A . CAATGT . T . . . . TT . AAATT . T . TTTT T A . C T . . A A . C . T . G T T C G TTA T GAATGGGAAACGTTGA G A C G A A C G A
blockSeqs : . GGT T . . GTT T . . A A CAAT C . TA A CATTGTATATGT ATT T . G G A . AT A . T AC . T . G . TC . A AGA AA A G . G . . G . CAATGT . T . . . . TT . . . . . . . . . . T . . T . . C . T . . T . T . T T GAATGGGAAACGTTGA G T G G T A C G A
blockSeqs : . A . . . GTT T . . . . AA C . TA A TTTATATATGT ATT T . . G A . A A . . . . . . . . TC . A AGA T A G . G . . A . CATAT . T . . . . TT . . . . . . . . . . T . . C . . T . . . . . . T . T T AATGGGAAACGCGA . T G . T . . G .
blockSeqs : . A . . . GTT T . . . . AA C . TG A TTTATATATGT TA A . . G A . A A . . . . . . . . A . . AGA A A T . G . . A . CATAC . A . . . . TT . . . . . . . . . . T . . C . . C . . . . . . T . T . AATA . A A . A . . .
blockSeqs : . A . . . TT T . . . . . C . TA A ATTGTATATGT TA A . . G A . A A . . . . . . . . A . . AAA A A G . T . . G . CGAT . T . . . . TT . . . . . . . . . . T . . . . . C . . . . . . A . A .
blockSeqs : . A . . . GT . . . . . . C . G A . TA A . . . A . . T . . . . . . . . A . . AGA . A G . G . . . . ATCT . T . . . . TT . . . . . . . . . . T . . . . . C . . . . . . T .
blockSeqs : . A . . . . . . . . . . . . G . . A . . . . . . . T . . . . . . . . A . . AG . . G . G . . . . CGTA . C . . . . T . . . . . . . . . . T . . . . . C . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . . . G . . . . CATA . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . .
blockSeqCons : A** GTT************* ** A*** C* TA TTGTATATGT*************************** ATA* A* ** ** ** ** **** AGA G**** *** ***** CATAT************** T** *** *** T*** ******* *** T***** AATGGGAAACGCGA**
originalCons : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT-AA-CAATC-AGTA--ATATAATGAAATGTATACTAT-----------TGT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------CAA--TGT-T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTG----TATAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
finalCons : TTCACA----TGTA--CCTTAT-A-GTACAAA-GTGTT-------------TTCAAT--AT-AGAA-GTA-CAATA---CAATC-AGTA--ATATAATAAAATGTATACTTGTATATGT---------------------------GGAACTAAGATTTTAATA-AAGTTA-T-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAAATGTATCATCAT---TAG----AAAT--AT---CTTCGAAT-----AAGCAATCATAT--------------T-TT--AGTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-G-TTTTTAC-A----G-TATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTGT-----TAAAAGGCTTCTTTCTTTAGGGTTAATGGGAAACGCGA--GATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACACATGGTATGCATTAAATGGGCATACAATCAAAATATAACAATTCTAAAACCATGCCATGCAGCATCCTTCATTTGTAACAAAAGAAACTATTTTCAGTACAAGTTTCTC
Unaligned ( gi|14 ): ATTCAAATTCTGTATTGATTCCACCACATTGGCATACATCAACATAGTATTACAACATAAATGTAACAGACAAGCAGTACAGGTATCTTATATACAAGCACAGTTAGACATTT
Unaligned ( gi|17 ): AAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACATATGATATGCATACAATTCACATTTTCAATTCACAT
Unaligned ( gi|18 ): AAATCCAAATTCTTTGTTGACTTTCCATCAACACTACACATGATATACATGTATTAAATGGATATACAATTCACATGTACTTT
Unaligned ( gi|20 ): ATTTCAAATTGCTTTATTGAACTTCCACCATATTGGCATATATCAGCATTTACACATACATGCATT
Unaligned ( gi|21 ): AATCCTTTCAATCATTGAAGGTCCCATATTGCATACGTACATACAGTGAAACATCTACACGATAT
Alignments
lowQualScore : 1111 111 1 2222222222222222 1 4444 11 11111111 33333333333333333333 111111111 1111 1 11 11 222222222222 111111 1 22222 1 11111 222222222222 11111 111 1111 1111111 1 22222 3333333333333333 1 2 2 1 1 1
lowQualScore : 0000 444 0 5 5 7777777777777777 3 66 5 8 3 2222 11 1 66 66666666 77777777777777777777 777777777 2222 88 5 0 2 3 66 33 1 66 8 22 66 8 55 8 8888 777777777777 111111 2 0 11 22222 2 777 77777 55 777 3 00000 000000000000 3 4 1 00000 777 4 4 4 666 3 99999 3 3 3 7777 3 3 666 3 0000 1111111 3 6 4 4 1 777 8 4 4 8 5 1 5 55555 7 1111111111111111 0 1 1 0 1 0 0 0 5
lowQualScore : .... ... . . . ................ . .. . . . .... .. . .. ........ .................... ......... .... .. . . . . .. .. . .. . .. .. . .. . .... ............ ...... . . .. ..... . ... ..... .. ... . ..... ............ . . . ..... ... . . . ... . ..... . . . .... . . ... . .... ....... . . . . . ... . . . . . . . ..... . ................ . . . . . . . . .
lowQualScore : 6666 666 0 0 0 2222222222222222 2 99 0 9 3 8888 11 9 11 11111111 99999999999999999999 888888888 0000 66 0 0 5 2 99 22 0 11 9 22 11 0 55 0 5555 666666666666 555555 0 8 44 22222 5 000 66666 55 000 9 00000 555555555555 6 4 0 00000 888 4 0 0 555 6 11111 6 6 6 7777 6 6 444 6 7777 8888888 6 0 0 0 6 000 0 0 4 9 0 0 7 88888 3 6666666666666666 0 4 4 0 4 4 0 0 5
consensus : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT--A-CAATC-AGTAATATAATA--AA--------ATGT-ATA---C--TT-GT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAG-AAA-TGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------C-ATATT-TTA-----GTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTGT-----TAAAAGGCTTCTTTCTTTAGGGTTGAATGGGAAACGTCGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
Reference ( family-2542 ) : TTCACA----TGTA--CCTTAT-A-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTA-CAAT--A-CAATC-AGTAATATAATA--AA--------ATGT-ATA---C--TT-GT-----ATATGT---------GGAACTAAGATTTTAATA-AAGTT-AT-CT-CTTGAAATTATA--ACA-TCNT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAGAAGAAAA-TGTATCATCAT---TA---G-AAAT--AT---CTTCGAAT-----AAGCAAT----------C-ATATT-TTA-----GTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGC-T-CTCATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATACG-TATTT-TTGT-----TAAAAGGCTTCTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTTGCAATTCGAACCTTTCCGAATACCGTACTGTAAAAAAGTAAATTTTCCTGTATTGGCTGATTT
gi|1 : TTCACA----TGT-----TTAT-GTATACAAA-GTTTGTTATAAACTATCATTTAATCGAT-AG---TTATCAA---A-TAAT--AGTAATATAATA--AATGTATATTATATTATAGATT--TT-GTTTGCGATGTGTACTCTCATAGAAATTA---TTTCAATA-AGATCCATACT-CTTGAA-TTATACCATA-TCTTGCT-CA--AGCATACT--GCATTCGT-TTAATTTATTACGTACTGATAA-----------AGCTTGAG------GAT-TCATAAAATCA----------T-TAT-ATCAT---TA---GTAAAT--ATAACCTTCAAATTTCGGGAGCAATGTCAGAGAATC-AAATCGTTACTGGAGTTCTGCTCTGAATATGTATAGAGTGGACATTTTTAATACCGAAATGCTT-CTCGTCTTCAAATT-----ACAATTTTT-ACAA----GT-ATTTAC--AAATCTTTTTATTT-CCGTATATAAAAGTTTTAACTATATGC-C-ATGAAATACTTCCACATTCCTCCAA-TTTCTTAAGT
gi|10 : tcatttaaattcaatttattttcactttattaatttagagctatggcttgcaccatattggcgactatggctctataaaacattacacattgattatgcattaaggacatactgagaTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGC-TTCTCATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AATGAT-TGG-CAGCG-AATACCTCC---CTCTTTCGA-TTTC-TAAGTTA-TGAGCGC-TAATATG-TACTT-TTGTTATTATAAAAGGCTTCTTTCTTTAGGATT-A---------------ATATTTTTGCAATTCAAACCTTTCC-AATACCGTACTGT-AAAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|11 : -----GTTCTGATGT---TAT-TACAGAGTGGCCA-TTTTAATA-CGAAATGCTT-CTCATCTTC-AA-T-----AC-GTTTTT-AC-A----GT-ATTC-C-AAAATCTTT---CTTCCCCT---TGA-------AATGAT-TGG-C-ACG-AATACCTCC---CTCTTTCGA-TTCT-CAAGTTA-TGAGCGC-TAATATGTTACTTGTTATTA---TAAAAGGCTTCTTTCTTTAGGATT-AATA----------------TTTTGCAATTCCAACCTTTCC-AATACCGTACTGT--AAAAGTAAATTTTCCTGTATT-GCTG-TTT
gi|12 : gTCACA----TGTA--CCTTAT-A-GTATAAA-GT----------------TTCAAT--ATGAGAA-GTA-CAAT----CAATCTAGTAATGTAATA--AA--------GTGT-----------------------------------GGAACTAAGTATTTAA---AAGTT-AT-CT-CTTGAA-TTATA--ACA-TTCT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAAC-AAAAAG-AAA-TGTA-CATCATTAATA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------C-G-ATT-TTA-----GTTCTG
gi|15 : attaaataggcataca-T-CTAATCTTC-AATT-----CC-AT----------------ATTTAC-AATATCTTT---TTT-CTCT---TGC-------TATATT-TGGAT-GTG-CATATCTAC---CAGTATCAA-TATC-TAA-TTAGTTAGCAC-TGACACA-CATTT-TT
gi|16 : ttATAGAGTGGACA-TTTTATTA-TGAACTGC-TTCTCATATTC-AATTAAATTAC-GTTTTT-AC-A----GT-ATTTACAAAAATCTTT---CTT-CCCT---TAA-------AACGAT-
gi|19 : AA-GTA-CAATCAATCAATC-AGTAACATAA-G--AA--------ATGT-ATA---CT-TT-AT-----ATATGT---------GAAATTAATATT
gi|2 : atcttaaattaaagaTTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT--AACAAT--AGTAATATAATA--AA--------ATGT-ATA---CCATT-GT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCAC--ATGTTTATTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAATGTT-TTA-----GTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CTCATCTTT-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTGT-----TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|3 : TTCAAA----TGTGGTTCTTATTA-GTACAAA-GT--GTT-----------TTCAAT--AT-AGAA-GTAATAAT--AACAAT--AGTAATATAATA--AA--------ATGT-ATA---CCATT-GT-----ATATGT---------GGAACTAAGATTTTAATT-AAGTT-TT-GTGTTTGAAATTATA--AC---CAT--T-CAACG--AAACTTTGCAC--ATGTTTATTCATTAC----TGATAAT----------CGCTTGAG------GATATCATAAAACTAAGAAGAAAAATGTGTCATCAT---TA---G-AAAT--AT---CTTC-AAT-----AAGCAAT----------CAATGTT-TTA-----GTTCTGATGT---TAT-CATAGAGTTGGCA-TTTTAATA-CGAAATGC-T-CTCATCTTT-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-GCA----TGA-------AACGA--TGG-T-GCT-AGTA-CTCC---CTCTTTCGATTTTC-TAAGTTA-TGAGCACTTAATACA-TATTT-TTGT-----TAAAAGGTTTCTTTC-TTAGGGTTGAATGGGAAACGTTGAGATATTTTT-CTATTTGAAACTTTCCGAATTCCGTACTGTAAAAAAGTAAATTTT-CTGTATTGGCTGATTT
gi|4 : TTGACA----TGTA--CCTTAA-A-GTATA---GT---TT-----------TTGAAT--TT-AGAAAGTA-CAATCAATCAATC-AGTAATATAA-G--AA--------ATGT-ATA---C--TTTAT-----ATATGT---------GAAATAAATATCTTA-TA-AAGGC-AT-CT-CTT-AAATTATA--ACA-TTAT--TTCA--G--AAACCT-GCAT--GT-TTTATCTTTCAC----TGAT--------------GCTTGAGTCCTAGGGT-TCACAAAACTAAGAAGTGA--TTTATCTTCAT---TA---T-TGAT--AT---CTTCGAAT-----AAACAAT----------C-ATATT-T-A-----GTTCTGGTGT---TAT-TATAGAGTGGACA-TTT--ATA-T------T-T-CTCATCTTC-AATG-----AC-GTTTTTTAC-ATTTTGTTATTTAC-AAAAT-TTT---CCT-CCC---------------ACGAT-TGGTC-GCG-AATACCTCT---CTCTTTCGA-TGTC-TAAGTTA-TGAGCGC-TAATACG-TTATT-TTGT-----TAAAAGGCTTCTTTCTTTAGAGT
gi|5 : tatatagacataaaaTTCACACGTATGTA--CCTTAT-A-GTACAAA-GT--G-T-----------TTCAAT--AT-AGAA-GTA-CAAT----CAATC-AGTAATAT-ATAATAA--------ATGC-ATG---T--TT--T-----AT
gi|5 : gcattaaatgggcatacaaT-GCAT--GT-TTTATTCATTAC----TGATAATCTTAAAAAAAAAATTGAG------GAT-TCATAAAACTAAGA----------------AT---TA---G-AAATGTAT---CATC--AT-----TAGAAAT------------ATCTT-CAA-----AT----AAGC---AAT-CATAT--TCTACA-TGTAAGTT-C----TGT-TTCTCATCTTC-AATT-----AC-GTTTTT-AC-A----GT-ATTTAC-AAAATCTTT---CTT-CCCT---TGA-------AACAAT-TGGCC-GCG-AATACCTCC---CTCTTTCGA-TTTC-TAACTTA-TGAGCGC-TAA-----------TTGA-----TA-----CGTTTTTCTTTAGGGTT-AATGGGAAACG-CGAGATATTTTTGCAATTCAAACTTTTCT-AATACCGCACTGT-AAAAAGTTAATTTTCCTGTATTGtcattactgataatcttaaaaaaaaaattgaggattcataaaactaagaattagaaatgtatcatcattagaaatatcttcaaataagcaatcatattctacatgtaagttctgtttctcatcttcaattacgtttttacagtatttacaaaatctttcttcccttgaaacaattggccgcgaatacctccctctttcgatttctaacttatgagcgctaattgatacgtttttctttagggttaatgggaaacgcgagatatttttgcaattcaaacttttctaataccgcactgtaaaaagttaattttcctgtattgc
gi|6 : gcattaaatgggcatacaattcacacgtatgtaccttatagtacaaagtgtttcaatatagaagtacaatcaatcagtaatatataataaaTTCACA----TGTA--CCTTAA-A-GTATAAAAGT--GTT-----------T-CAAT--AT-AGAAAGTA-CAAT----CAATC-AGTAATATGATG--AA---------TGT-ATA---CA-TT-GT-----ATATGT---------GGAACTAAGATTTTA-TA-AAGCT-AT-CT-CTT-AAATTATA--CCA-TTAT--TTCA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCATAAAACTAAG----AAA-TGTATCATCAT---TA---G-AAAT--AT---CTTCAAAT-----AAGCAAT----------C-ATc
gi|7 : aattcaaattctttattgactgccaccatattggcatatattaacattacacatgatatgcattaaatgggcatacatTTCACA----TGTA--CCTTAT-A-GTATAAA-GT--GTT-----------T-CAAT--AT-AGAA-GTA-CAAT----CAATC-AGTAATGTAATA--AA--------GTGT-----------------------------------GGAACTAAGATTTTCATATAAGTT--T-CT-C-TGGAATTATA--ACATTCTT--T-CA--G--AAACTT-GCAT--GT-TTTATTCATTAC----TGATAA-----------AGCTTGAG------GAT-TCAT-AAACTAAAAAG-AAA-TGTATCATCAT---TATAGA-AAAT--AT---CTTCAAAT-----AAGCAAT----------C-GTA-T-TTA-----GTTCT
gi|8 : ggcatacgtacatcaacagtgaacactacacatgatatgcattaaataggcatacaaT---------GGAACTAAGATTTTA-TA-AAGTT-AT-CT-CTTG-TATTATA--ACATTCTT--T-CA--G--AAACTT-GCAT--GT-CTTATTCATT------TCATA----------------TG----------TATCAT--CATT----AGAAA----TATCTTC------------AAAT--A------------------AGCAAT----------C-ATA-T-TTA-----GTTCTGATGT---TAT-TATAGAGTGGACA-TTTTAATA-CGAAATGCTT-TTCATCTTC-AATT-----AT-GTTTTT-AC-A----GT-ATTTAA-AAAATCTTT---CTT-CCCT---TGA-------AACGAT-TGG-C-CCG-AATACCTCC---CTCTTTCGA-TTTC-TCAGTTA-TAAGCAC-TAATATG-TAT
gi|9 : T--T-CA--G--AAACTT-CCAT--GT-TTTATTCATCAC----TGATAG-----------AGCTTTAG------GAT-TCATAAAACTAAGAAG-AAA-TGTATCATCAT---TA---G-AAAT--AT---CTTTGAAT-----AAGCAAT----------C-ATACT-TC------GTTCTGATGT---TAC-TATATAGTGAACA-TTTTAATA-CGGAAGGCTT-TTCATCTTC-AGTT-----AC-ATTTTC-AC-A----AT-ATTTAC-AAAATTTTT---CTT-CCCT---TGA-------AACGAT-TGGCC-ACA-AATACCTCC---CTCTTTCGA-TTTC-TAAATTA-TGAGCGC-TAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACACATGGTATGCATTAAATGGGCATACAATCAAAATATAACAATTCTAAAACCATGCCATGCAGCATCCTTCATTTGTAACAAAAGAAACTATTTTCAGTACAAGTTTCTC
Unaligned ( gi|14 ): ATTCAAATTCTGTATTGATTCCACCACATTGGCATACATCAACATAGTATTACAACATAAATGTAACAGACAAGCAGTACAGGTATCTTATATACAAGCACAGTTAGACATTT
Unaligned ( gi|17 ): AAATTCAAATTCTTTATTGACTTTCACCATATTGGCATACATCAACACTACATATGATATGCATACAATTCACATTTTCAATTCACAT
Unaligned ( gi|18 ): AAATCCAAATTCTTTGTTGACTTTCCATCAACACTACACATGATATACATGTATTAAATGGATATACAATTCACATGTACTTT
Unaligned ( gi|20 ): ATTTCAAATTGCTTTATTGAACTTCCACCATATTGGCATATATCAGCATTTACACATACATGCATT
Unaligned ( gi|21 ): AATCCTTTCAATCATTGAAGGTCCCATATTGCATACGTACATACAGTGAAACATCTACACGATAT