lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 22 1111 111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 2 1 1 1
lowQualScore : 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 0 3 3 22 1 4444 0 8 99 555555 6 1 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 44 6 0 3 3 3
lowQualScore : . .......................................................................................................................................... . . . . .. . .... . . .. ...... . . . ................................................................................................. .. . . . . .
lowQualScore : 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 2 2 00 0 8888 6 0 22 555555 7 0 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 7 7 3 3 3
consensus : GCGGATTCAAGGCCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCGTA-TTACTG-TTTTAAAGAAATGTTTTGTCGTAGATTTCAAATTT-GAATT--AAC-ANACGAGCCTATTTTC-CAAAGGTC-AA------N---GG-----AAATG-----------TCCG-TCAT---TA---C---T---AAGANT---TAACAAA--AACGA-TATAGTGAATA-ATGCATCTG-AAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
Reference ( gi|2 ) : GTGGATTCAAGG---GGGAG------GTTGCAATCCCCC---------------TTTGAAAATCAAAT--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATATATA-TTATTG-TTTTAAAGAAATGTTTTATCATAGATTTCAAATTT-AAATT--AAC-ACATCAGCCTATTTTC-CAAAGGTC-AA------T---GG-----AAAT------------TCT--TTAT---TA---C---T---AAAATT---TACCAAA--AACGA-AATAGTGAATATATACATCTGAAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|3 : GCGGATTCAAGGCCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-TTACTG-TTTTAAAGAAAT--------------------TTG-AAATT--AAC-A--TGAGCCTATTTTCAAAAAGGTC-AA------A---GG-----AAATATGTAATGTCTGTCC--TTATAAGTATGGC---TCTAAAAAGT---TAACAAA--AACGA-
gi|4 : ACATGT-TACTTACCG-TTT-AAAGAAATGTTT-ATTGTTAAT----ACTTTGAAATT--AGC-CTATTGACCTATTTTA-CAAATGT--AA------T---AGGGCAAAAAT------------TATGTTCAT---TA---G---T---AATATTGTTTCTTAAATTATCGATAAAAGTGAATA----CATCTGTAATTGAAGCCGA-CAAC-AAGACCGTAACGGtgtggt
gi|1 : ataTG-TTACTGGTTTTTAAGAAATGTTTTGTCATAGATTTGAAATTT-GAATC--AACAACATGAGCCTAATATT-CAAATGTC-TA------T---gggggggggggggggggtggggggggggggggggggggggtgggggggggggggtcgtgggggggggggggggg
gi|6 : cggattcaagggccaggttgctggggttgcaacccccaccctccctattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaacgACTG-TTATAA-GAAATGTTT-GTCATAGATTCCAAATTT-GAATTTAAAA-AAACGAGCCTATTTTC-CGAAAATCAAA------A---GG-----AAATGG----------GCA--ATAT---TA---CGGTT---CAGATT---TAAC-AA--AACGA-TATAGTGA----ATGCATCT--AATGGGGGCCAATCAACAAAGGCCTT-ACctttaatgatatgagtacagcgttctaaaaattgaacataacgctatagtg
gi|16 : aagacagattgtgaaTGTTTTCTCATAGATTTCAAATTT-GAATT--ACC-AAACGAGCCTATTTTC-CAAAGATC-AA------A---GG-----TAAT-------------------AG---GG---C---A---AAAAGT---TAACAAA--AACGA-TAT
gi|13 : TT--AAC-ACATGAACTTATTTTC-CAAAGGTC-AAAGAAAATAGGGG-----AAACG-----------TCTG-TCCT---TA---T---T---AAG------TAT-------------------AATAAATACATCTGAAAT-GAGGCCAA-CAAC-ATGGCCGT-
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ACTGCTACCTATAGTAAAAAATTCAGTGCAATATTTATTGTAAGTTATTGGATGTTGATAAAGTACTAACCTGTGACTCATACTTGAGTCAGCTAAGGCTTGTAACCAGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGACGGGGGGGGGGGGGGGGGGGTGGGGGGGG
Unaligned ( gi|7 ): AATTAAAAGGTACAGAGACTACTTTAATTATGGTAATACCATAAACTACTAATTATAGAAGGTCCATTTCAAAATTAGTACCACAAGTTAATGGAGATAAAGACTGAAGTGAATGGTTAAGCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|8 ): AGCAGTCATGTTTGTTGCAATATAATTGTTTCAAATACTTCAGTTAATAGTTGTAATTGCTATAGGACACACAGTAATCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|9 ): GAGTGCAATATTCACAAGGTACTTGTAGTTACATGTGTGTGAATCAAGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|11 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): TGACCTATATTACCTTAAAAAATTCAATAGGGTAACCATCTTCTTCTTCGTCCATAAATTTGTATCCATATATTTGTATATATCAGGTGACTCGTACTAGGTGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|14 ): GGTAATTTTTTACTATTAAAATCGTAAGCATGGTTATTGGAATCACACCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|15 ): AAGACACATTGTAGATACGATGTATCGGCGATATCGTCTAACAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|17 ): TTGTTTTTTCAATTAACTGTCAAGGTTTTGGAATTCAATTCTGAAATTGGAAGGTCCGGACGAGACCGTAACGGGGGGGCGGGGCGGGGGG
Alignments
lowQualScore : 1 22222 222222222222222 11 44444444444444444444444444444444444444444 1 999999999999999999999999999999999999999999999999999999999999999999999 1111111111111 3333 33 2 1 1 1
lowQualScore : 3 888 33333 333333333333333 4 88 11111111111111111111111111111111111111111 6 0 8 0 0 77777 777 5 77 5 1 2 5 111111111111111111111111111111111111111111111111111111111111111111111 333 4444444444444 6 3 5555 22 0 0 0 0
lowQualScore : . ... ..... ............... . .. ......................................... . . . . . ..... ... . .. . . . . ..................................................................... ... ............. . . .... .. . . . .
lowQualScore : 3 777 33333 000000000000000 0 00 00000000000000000000000000000000000000000 5 0 0 8 8 77777 222 7 99 7 0 7 7 111111111111111111111111111111111111111111111111111111111111111111111 777 3333333333333 7 2 0000 55 0 0 0 0
consensus : GCGGATTCAA-GGCCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTTTTGTCATAGATTTCAAATTTGAA-TT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG----A-------A--AT--GTCCGTCATTA---------C---T---AAAANT---T-AACAAA--AACGATATA-GTGAATA-ATGCATCTGAAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
Reference ( family-2495 ) : GCGGATTCAA-GGCCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCGTA-TTACTG-TTTTAAAGAAATGTTTTGTCGTAGATTTCAAATTTGAA-TT--AAC-ANACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG----A-------A--AT--GTCCGTCATTA---------C---T---AAGANT---T-AACAAA--AACGATATA-GTGAATA-ATGCATCTG-AAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|1 : CGGATTCAAGGGCCAGGTTGCTGG-GGTTGCAACCCCCACCCTCCC
gi|1 : CGTG-TTACTGGTTTTTAAGAAATGTTTTGTCATAGATTTGAAATTTGAA-TC--AACAACATGAGCCTAATATT-CAAATGTCTATCTTTA-A---------T-G----A-------T--ATGAGTACAGCGTT----------C---T---AAAAAT---TGAAC-AT--AACGCTATA-GTGtattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaacgtgttactggtttttaagaaatgttttgtcatagatttgaaatttgaatcaacaacatgagcctaatattcaaatgtctatctttaatgatatgagtacagcgttctaaaaattgaacataacgctatagtg
gi|13 : cggattcaagggccaggttgctggggttgcaacccccaccctccctattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaa-TT--AAC-ACATGAACTTATTTTC-CAAAGGTC-------A-AAGAAAATAGGGG----A-------A--AC--GTCTGTCCTTA---------T---T---AAG---------------------TATA-ATAAATA----CATCTGAAAT-GAGGCCAA-CAAC-ATGGCCGT-
gi|16 : TGTTTTCTCATAGATTTCAAATTTGAA-TT--ACC-AAACGAGCCTATTTTC-CAAAGATC-------A-A---------AGG----T-------A--ATA-G---GGCA--------------------AAAAGT---T-AACAAA--AACGATATacccgggaggggggtgcgcc
gi|2 : GTGGATTCAA-GG---GGGAG------GTTGCAATCCCCC---------------TTTGAAAATCAAAT--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATATATA-TTATTG-TTTTAAAGAAATGTTTTATCATAGATTTCAAATTTAAA-TT--AAC-ACATCAGCCTATTTTC-CAAAGGTC-------A-A---------TGG----A-------A--AT---TCT-TTATTA---------C---T---AAAATT---T-ACCAAA--AACGAAATA-GTGAATATATACATCTGAAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|3 : GCGGATTCAA-GGCCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-TTACTG-TTTTAAAGAAA---TTTG-----------------AAA-TT--AAC-AT--GAGCCTATTTTCAAAAAGGTC-------A-A---------AGG----AAATATGTA--AT--GTCTGTCCTTATAAGTATGGC---TCTAAAAAGT---T-AACAAA--AACGATGTG-GT
gi|4 : ACATGT-TACTTACCG-TTT-AAAGAAATGTTT-ATTGTTAAT----ACTTTGAAATT--AGC-CTATTGACCTATTTTA-CAAATGTA-------ATA---------GGGCAAAA-------ATTAT--GT---TCATTA---------G---T---AATATTGTTT-CTTAAATTATCGATAAAAGTGAATA----CATCTGTAATTGAAGCCGA-CAAC-AAGACCGTAACGG
gi|6 : ataACTG-TTATAA-GAAATGTTT-GTCATAGATTCCAAATTTGAA-TTTAAAA-AAACGAGCCTATTTTC-CGAAAATCA------A-A---------AGG----A-------A--AT--GGGCAATATTA---------CGGTT---CAGATT---T-AAC-AA--AACGATATA-GTG---A-ATGCATCT--AATGGGGGCCAATCAACAAAGGCCTT-ACgggggggggggggggggtggggggggggggggggggggggtgggggggggggggtcgtgggggggggggggggg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACTGCTACCTATAGTAAAAAATTCAGTGCAATATTTATTGTAAGTTATTGGATGTTGATAAAGTACTAACCTGTGACTCATACTTGAGTCAGCTAAGGCTTGTAACCAGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGACGGGGGGGGGGGGGGGGGGGTGGGGGGGG
Unaligned ( gi|7 ): AATTAAAAGGTACAGAGACTACTTTAATTATGGTAATACCATAAACTACTAATTATAGAAGGTCCATTTCAAAATTAGTACCACAAGTTAATGGAGATAAAGACTGAAGTGAATGGTTAAGCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|8 ): AGCAGTCATGTTTGTTGCAATATAATTGTTTCAAATACTTCAGTTAATAGTTGTAATTGCTATAGGACACACAGTAATCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|9 ): GAGTGCAATATTCACAAGGTACTTGTAGTTACATGTGTGTGAATCAAGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|11 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): TGACCTATATTACCTTAAAAAATTCAATAGGGTAACCATCTTCTTCTTCGTCCATAAATTTGTATCCATATATTTGTATATATCAGGTGACTCGTACTAGGTGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|14 ): GGTAATTTTTTACTATTAAAATCGTAAGCATGGTTATTGGAATCACACCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|15 ): AAGACACATTGTAGATACGATGTATCGGCGATATCGTCTAACAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|17 ): TTGTTTTTTCAATTAACTGTCAAGGTTTTGGAATTCAATTCTGAAATTGGAAGGTCCGGACGAGACCGTAACGGGGGGGCGGGGCGGGGGG
Alignments
lowQualScore : 2222 22222 222222222222222 55555555555555555555555555555555 1 999999999999999999999999999999999999999999999999999999999999999999999 1111111111111 3333 2 1 1 1
lowQualScore : 2222 11111 333333333333333 1 2 88888888888888888888888888888888 6 0 8 0 0 99 3 777 5 77 666 1 5 111111111111111111111111111111111111111111111111111111111111111111111 3 3 4444444444444 6 3 5555 66 0 0 0 0
lowQualScore : .... ..... ............... . . ................................ . . . . . .. . ... . .. ... . . ..................................................................... . . ............. . . .... .. . . . .
lowQualScore : 0000 00000 000000000000000 0 5 55555555555555555555555555555555 5 0 0 8 8 22 2 222 7 99 444 4 7 111111111111111111111111111111111111111111111111111111111111111111111 9 0 3333333333333 7 2 0000 00 0 0 0 0
consensus : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTTT--TGTCATAGATTTCAAATTTGAA-TT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG----A-------A--AT--GTCCGTCATTA---------C---T---AAAANT---T-AACAAA--AACGATATA-GTGAATA-ATGCATCTGAAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
Reference ( family-2495 ) : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTTT--TGTCATAGATTTCAAATTTGAA-TT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG----A-------A--AT--GTCCGTCATTA---------C---T---AAAANT---T-AACAAA--AACGATATA-GTGAATA-ATGCATCTGAAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|1 : CGGATTCAAGGGCCAGGTTGCTGG-GGTTGCAACCCCCACCCTCCC
gi|1 : CGTG-TTACTGGTTTTTAAGAAATGTTT--TGTCATAGATTTGAAATTTGAA-TC--AACAACATGAGCCTAATATT-CAAATGTCTATCTTTA-A---------T-G----A-------T--ATGAGTACAGCGTT----------C---T---AAAAAT---TGAAC-AT--AACGCTATA-GTGtattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaacgtgttactggtttttaagaaatgttttgtcatagatttgaaatttgaatcaacaacatgagcctaatattcaaatgtctatctttaatgatatgagtacagcgttctaaaaattgaacataacgctatagtg
gi|13 : cggattcaagggccaggttgctggggttgcaacccccaccctccctattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaa-TT--AAC-ACATGAACTTATTTTC-CAAAGGTC-------A-AAGAAAATAGGGG----A-------A--AC--GTCTGTCCTTA---------T---T---AA---------------------GTATA-ATAAATA----CATCTGAAAT-GAGGCCAA-CAAC-ATGGCCGT-
gi|16 : TGTTT--TCTCATAGATTTCAAATTTGAA-TT--ACC-AAACGAGCCTATTTTC-CAAAGATC-------A-A---------AGG----T-------A--ATA-G---GGCA--------------------AAAAGT---T-AACAAA--AACGATATacccgggaggggggtgcgcc
gi|2 : GTGGATTCAAGG----GGGAG------GTTGCAATCCCCC---------------TTTGAAAATCAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATATATA-TTATTG-TTTTAAAGAAATGTTT--TATCATAGATTTCAAATTTAAA-TT--AAC-ACATCAGCCTATTTTC-CAAAGGTC-------A-A---------TGG----A-------A--AT---TCT-TTATTA---------C---T---AAAATT---T-ACCAAA--AACGAAATA-GTGAATATATACATCTGAAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|3 : GCGGATTCAAGG-CCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-TTACTG-TTTTAAAGAAA---TT--TG-----------------AAA-TT--A---ACATGAGCCTATTTTCAAAAAGGTC-------A-A---------AGG----AAATATGTA--AT--GTCTGTCCTTATAAGTATGGC---TCTAAAAAGT---T-AACAAA--AACGATGTG-GT
gi|4 : ACATGT-TACTTACCG-TTT-AAAGAAATGTTTATTGTTA---AT----ACTTTGAAATT--AGC-CTATTGACCTATTTTA-CAAATGTA-------ATA---------GGGCAAAA-------ATTAT--GT---TCATTA---------G---T---AATATTGTTT-CTTAAATTATCGATAAAAGTGAATA----CATCTGTAATTGAAGCCGA-CAAC-AAGACCGTAACGG
gi|6 : ataACTG-TTATAA-GAAATGTTT---GTCATAGATTCCAAATTTGAA-TTTAAAA-AAACGAGCCTATTTTC-CGAAAATCA------A-A---------AGG----A-------A--AT--GGGCAATATTA---------CGGTT---CAGATT---T-AAC-AA--AACGATATA-GTG---A-ATGCATCT--AATGGGGGCCAATCAACAAAGGCCTT-ACgggggggggggggggggtggggggggggggggggggggggtgggggggggggggtcgtgggggggggggggggg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACTGCTACCTATAGTAAAAAATTCAGTGCAATATTTATTGTAAGTTATTGGATGTTGATAAAGTACTAACCTGTGACTCATACTTGAGTCAGCTAAGGCTTGTAACCAGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGACGGGGGGGGGGGGGGGGGGGTGGGGGGGG
Unaligned ( gi|7 ): AATTAAAAGGTACAGAGACTACTTTAATTATGGTAATACCATAAACTACTAATTATAGAAGGTCCATTTCAAAATTAGTACCACAAGTTAATGGAGATAAAGACTGAAGTGAATGGTTAAGCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|8 ): AGCAGTCATGTTTGTTGCAATATAATTGTTTCAAATACTTCAGTTAATAGTTGTAATTGCTATAGGACACACAGTAATCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|9 ): GAGTGCAATATTCACAAGGTACTTGTAGTTACATGTGTGTGAATCAAGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|11 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): TGACCTATATTACCTTAAAAAATTCAATAGGGTAACCATCTTCTTCTTCGTCCATAAATTTGTATCCATATATTTGTATATATCAGGTGACTCGTACTAGGTGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|14 ): GGTAATTTTTTACTATTAAAATCGTAAGCATGGTTATTGGAATCACACCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|15 ): AAGACACATTGTAGATACGATGTATCGGCGATATCGTCTAACAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|17 ): TTGTTTTTTCAATTAACTGTCAAGGTTTTGGAATTCAATTCTGAAATTGGAAGGTCCGGACGAGACCGTAACGGGGGGGCGGGGCGGGGGG
Alignments
lowQualScore : 2222 22222 222222222222222 55555555555555555555555555555555 1 999999999999999999999999999999999999999999999999999999999999999999999 1111 3333 11 1 1 1 1
lowQualScore : 2222 11111 333333333333333 1 1 77777777777777777777777777777777 6 0 8 0 0 99 3 777 6 77 666 1 5 111111111111111111111111111111111111111111111111111111111111111111111 3 3333 999999999 5 3 5555 22 0 0 0 0
lowQualScore : .... ..... ............... . . ................................ . . . . . .. . ... . .. ... . . ..................................................................... . .... ......... . . .... .. . . . .
lowQualScore : 0000 00000 000000000000000 0 0 55555555555555555555555555555555 5 0 0 8 8 22 2 222 7 99 444 4 7 111111111111111111111111111111111111111111111111111111111111111111111 9 0000 999999999 7 2 0000 55 0 0 0 0
consensus : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
Reference ( family-2495 ) : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|1 : CGGATTCAAGGGCCAGGTTGCTGG-GGTTGCAACCCCCACCCTCCC
gi|1 : CGTG-TTACTGGTTTTTAAGAAATGTT--TTGTCATAGATTTGAAATTTG-AATC--AACAACATGAGCCTAATATT-CAAATGTCTATCTTTA-A---------T-G-A-------T-----ATGAGTACAGCGTT----------C---T---AAAA---ATTGAAC-AT--AACGCT-ATAGTGtattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaacgtgttactggtttttaagaaatgttttgtcatagatttgaaatttgaatcaacaacatgagcctaatattcaaatgtctatctttaatgatatgagtacagcgttctaaaaattgaacataacgctatagtg
gi|13 : cggattcaagggccaggttgctggggttgcaacccccaccctccctattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaaTT--AAC-ACATGAACTTATTTTC-CAAAGGTC-------A-AAGAAAATAGGGG-A-------A-----AC--GTCTGTCCTTA---------T---T---AA---------------------GT-ATAATAAATA----CATCTG-AAAT-GAGGCCAA-CAAC-ATGGCCGT-
gi|16 : TGTT--TTCTCATAGATTTCAAATTTG-AATT--ACC-AAACGAGCCTATTTTC-CAAAGATC-------A-A---------AGG-T-------A-----ATA-G---GGCA--------------------AAAA---GTT-AACAAA--AACGAT-ATacccgggaggggggtgcgcc
gi|2 : GTGGATTCAAGG----GGGAG------GTTGCAATCCCCC---------------TTTGAAAATCAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATATATA-TTATTG-TTTTAAAGAAATGTT--TTATCATAGATTTCAAATTTA-AATT--AAC-ACATCAGCCTATTTTC-CAAAGGTC-------A-A---------TGG-A-------A-----AT---TCT-TTATTA---------C---T---AAAA---TTT-ACCAAA--AACGAA-ATAGTGAATATATACATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|3 : GCGGATTCAAGG-CCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-TTACTG-TTTTAAAGAAA---T--TTG-----------------A-AATT--A---ACATGAGCCTATTTTCAAAAAGGTC-------A-A---------AGG-AAATATGTA-----AT--GTCTGTCCTTATAAGTATGGC---TCTAAAAA---GTT-AACAAA--AACGAT-GTGGT
gi|4 : ACATGT-TACTTACCG-TTT-AAAGAAATGTTTATTGTTA---AT----ACTTTGAAATT--AGC-CTATTGACCTATTTTA-CAAATGTA-------ATA---------GGGCA-------AAAATTAT--GT---TCATTA---------G---T---AATATTGTTT-CTTAAATTATCGATAAAAGTGAATA----CATCTGTAATT-GAAGCCGA-CAAC-AAGACCGTAACGG
gi|6 : ataACTG-TTATAA-GAAATGTT--T-GTCATAGATTCCAAATTTG-AATTTAAAA-AAACGAGCCTATTTTC-CGAAAATCA------A-A---------AGG-A-------A-----AT--GGGCAATATTA---------CGGTT---CAGA---TTT-AAC-AA--AACGAT-ATAGTG---A-ATGCATCT---AATGGGGGCCAATCAACAAAGGCCTT-ACgggggggggggggggggtggggggggggggggggggggggtgggggggggggggtcgtgggggggggggggggg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACTGCTACCTATAGTAAAAAATTCAGTGCAATATTTATTGTAAGTTATTGGATGTTGATAAAGTACTAACCTGTGACTCATACTTGAGTCAGCTAAGGCTTGTAACCAGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGACGGGGGGGGGGGGGGGGGGGTGGGGGGGG
Unaligned ( gi|7 ): AATTAAAAGGTACAGAGACTACTTTAATTATGGTAATACCATAAACTACTAATTATAGAAGGTCCATTTCAAAATTAGTACCACAAGTTAATGGAGATAAAGACTGAAGTGAATGGTTAAGCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|8 ): AGCAGTCATGTTTGTTGCAATATAATTGTTTCAAATACTTCAGTTAATAGTTGTAATTGCTATAGGACACACAGTAATCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|9 ): GAGTGCAATATTCACAAGGTACTTGTAGTTACATGTGTGTGAATCAAGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|11 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): TGACCTATATTACCTTAAAAAATTCAATAGGGTAACCATCTTCTTCTTCGTCCATAAATTTGTATCCATATATTTGTATATATCAGGTGACTCGTACTAGGTGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|14 ): GGTAATTTTTTACTATTAAAATCGTAAGCATGGTTATTGGAATCACACCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|15 ): AAGACACATTGTAGATACGATGTATCGGCGATATCGTCTAACAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|17 ): TTGTTTTTTCAATTAACTGTCAAGGTTTTGGAATTCAATTCTGAAATTGGAAGGTCCGGACGAGACCGTAACGGGGGGGCGGGGCGGGGGG
Alignments
lowQualScore : 2222 22222 222222222222222 55555555555555555555555555555555 1 999999999999999999999999999999999999999999999999999999999999999999999 1111 3333 11 1 1 1 1
lowQualScore : 2222 11111 333333333333333 1 1 77777777777777777777777777777777 6 0 8 0 0 99 3 777 6 77 666 1 5 111111111111111111111111111111111111111111111111111111111111111111111 3 3333 999999999 5 3 5555 22 0 0 0 0
lowQualScore : .... ..... ............... . . ................................ . . . . . .. . ... . .. ... . . ..................................................................... . .... ......... . . .... .. . . . .
lowQualScore : 0000 00000 000000000000000 0 0 55555555555555555555555555555555 5 0 0 8 8 22 2 222 7 99 444 4 7 111111111111111111111111111111111111111111111111111111111111111111111 9 0000 999999999 7 2 0000 55 0 0 0 0
consensus : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
Reference ( family-2495 ) : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|1 : CGGATTCAAGGGCCAGGTTGCTGG-GGTTGCAACCCCCACCCTCCC
gi|1 : CGTG-TTACTGGTTTTTAAGAAATGTT--TTGTCATAGATTTGAAATTTG-AATC--AACAACATGAGCCTAATATT-CAAATGTCTATCTTTA-A---------T-G-A-------T-----ATGAGTACAGCGTT----------C---T---AAAA---ATTGAAC-AT--AACGCT-ATAGTGtattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaacgtgttactggtttttaagaaatgttttgtcatagatttgaaatttgaatcaacaacatgagcctaatattcaaatgtctatctttaatgatatgagtacagcgttctaaaaattgaacataacgctatagtg
gi|13 : cggattcaagggccaggttgctggggttgcaacccccaccctccctattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaaTT--AAC-ACATGAACTTATTTTC-CAAAGGTC-------A-AAGAAAATAGGGG-A-------A-----AC--GTCTGTCCTTA---------T---T---AA---------------------GT-ATAATAAATA----CATCTG-AAAT-GAGGCCAA-CAAC-ATGGCCGT-
gi|16 : TGTT--TTCTCATAGATTTCAAATTTG-AATT--ACC-AAACGAGCCTATTTTC-CAAAGATC-------A-A---------AGG-T-------A-----ATA-G---GGCA--------------------AAAA---GTT-AACAAA--AACGAT-ATacccgggaggggggtgcgcc
gi|2 : GTGGATTCAAGG----GGGAG------GTTGCAATCCCCC---------------TTTGAAAATCAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATATATA-TTATTG-TTTTAAAGAAATGTT--TTATCATAGATTTCAAATTTA-AATT--AAC-ACATCAGCCTATTTTC-CAAAGGTC-------A-A---------TGG-A-------A-----AT---TCT-TTATTA---------C---T---AAAA---TTT-ACCAAA--AACGAA-ATAGTGAATATATACATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|3 : GCGGATTCAAGG-CCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-TTACTG-TTTTAAAGAAA---T--TTG-----------------A-AATT--A---ACATGAGCCTATTTTCAAAAAGGTC-------A-A---------AGG-AAATATGTA-----AT--GTCTGTCCTTATAAGTATGGC---TCTAAAAA---GTT-AACAAA--AACGAT-GTGGT
gi|4 : ACATGT-TACTTACCG-TTT-AAAGAAATGTTTATTGTTA---AT----ACTTTGAAATT--AGC-CTATTGACCTATTTTA-CAAATGTA-------ATA---------GGGCA-------AAAATTAT--GT---TCATTA---------G---T---AATATTGTTT-CTTAAATTATCGATAAAAGTGAATA----CATCTGTAATT-GAAGCCGA-CAAC-AAGACCGTAACGG
gi|6 : ataACTG-TTATAA-GAAATGTT--T-GTCATAGATTCCAAATTTG-AATTTAAAA-AAACGAGCCTATTTTC-CGAAAATCA------A-A---------AGG-A-------A-----AT--GGGCAATATTA---------CGGTT---CAGA---TTT-AAC-AA--AACGAT-ATAGTG---A-ATGCATCT---AATGGGGGCCAATCAACAAAGGCCTT-ACgggggggggggggggggtggggggggggggggggggggggtgggggggggggggtcgtgggggggggggggggg
blockSeqs : CCG TTGGT CCCCCCCCCCCCCAT A C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A C . TA T TTC A TA AC T A AAAGGAAATATGTAATGTCTGTCCTTATAAGTATGGCTCTA A TTGT CTTAAATT A A TATA GT G T A A
blockSeqs : . . G . . . T TTC . . CC C . AAAGAAAATAGGGGAAACGTCTGTCCTTATT A G AACAAA . A ATG G . . . .
blockSeqs : . . . . T TCC . . AC T . ATAGGGCAAAAATTATGTTCATTAGT A T ACCAAA . . . . . . . .
blockSeqs : . . . . . . GC T . AAAAGGAAATGGGCAATATTACGGTT T G AACAAA .
blockSeqs : . . . . . AA T . AATGGAAATTCTTTATTACT G T AACAA .
blockSeqs : . . C . AAAGGTAATAGGGCA . . . .
blockSeqCons : AC*
originalCons : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
finalCons : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACTGCTACCTATAGTAAAAAATTCAGTGCAATATTTATTGTAAGTTATTGGATGTTGATAAAGTACTAACCTGTGACTCATACTTGAGTCAGCTAAGGCTTGTAACCAGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGACGGGGGGGGGGGGGGGGGGGTGGGGGGGG
Unaligned ( gi|7 ): AATTAAAAGGTACAGAGACTACTTTAATTATGGTAATACCATAAACTACTAATTATAGAAGGTCCATTTCAAAATTAGTACCACAAGTTAATGGAGATAAAGACTGAAGTGAATGGTTAAGCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|8 ): AGCAGTCATGTTTGTTGCAATATAATTGTTTCAAATACTTCAGTTAATAGTTGTAATTGCTATAGGACACACAGTAATCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|9 ): GAGTGCAATATTCACAAGGTACTTGTAGTTACATGTGTGTGAATCAAGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|11 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): TGACCTATATTACCTTAAAAAATTCAATAGGGTAACCATCTTCTTCTTCGTCCATAAATTTGTATCCATATATTTGTATATATCAGGTGACTCGTACTAGGTGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|14 ): GGTAATTTTTTACTATTAAAATCGTAAGCATGGTTATTGGAATCACACCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|15 ): AAGACACATTGTAGATACGATGTATCGGCGATATCGTCTAACAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|17 ): TTGTTTTTTCAATTAACTGTCAAGGTTTTGGAATTCAATTCTGAAATTGGAAGGTCCGGACGAGACCGTAACGGGGGGGCGGGGCGGGGGG
Alignments
lowQualScore : 2222 22222 222222222222222 55555555555555555555555555555555 1 999999999999999999999999999999999999999999999999999999999999999999999 1111 3333 11 1 1 1 1
lowQualScore : 2222 11111 333333333333333 1 1 77777777777777777777777777777777 6 0 8 0 0 99 3 777 6 77 666 1 5 111111111111111111111111111111111111111111111111111111111111111111111 3 3333 999999999 5 3 5555 22 0 0 0 0
lowQualScore : .... ..... ............... . . ................................ . . . . . .. . ... . .. ... . . ..................................................................... . .... ......... . . .... .. . . . .
lowQualScore : 0000 00000 000000000000000 0 0 55555555555555555555555555555555 5 0 0 8 8 22 2 222 7 99 444 4 7 111111111111111111111111111111111111111111111111111111111111111111111 9 0000 999999999 7 2 0000 55 0 0 0 0
consensus : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
Reference ( family-2495 ) : GCGGATTCAAGG-CCGGGGAGCTGG-GGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAANCAAACNAAAATACAGAAAACAAAACCAAGCAAAAAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATGCGTA-TTACTG-TTTTAAAGAAATGTT--TTGTCATAGATTTCAAATTTG-AATT--AAC-ACACGAGCCTATTTTC-CAAAGGTC-------A-A---------NGG-A-------A-----AT--GTCCGTCATTA---------C---T---AAAA---NTT-AACAAA--AACGAT-ATAGTGAATA-ATGCATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|1 : CGGATTCAAGGGCCAGGTTGCTGG-GGTTGCAACCCCCACCCTCCC
gi|1 : CGTG-TTACTGGTTTTTAAGAAATGTT--TTGTCATAGATTTGAAATTTG-AATC--AACAACATGAGCCTAATATT-CAAATGTCTATCTTTA-A---------T-G-A-------T-----ATGAGTACAGCGTT----------C---T---AAAA---ATTGAAC-AT--AACGCT-ATAGTGtattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaacgtgttactggtttttaagaaatgttttgtcatagatttgaaatttgaatcaacaacatgagcctaatattcaaatgtctatctttaatgatatgagtacagcgttctaaaaattgaacataacgctatagtg
gi|13 : cggattcaagggccaggttgctggggttgcaacccccaccctccctattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgtaaTT--AAC-ACATGAACTTATTTTC-CAAAGGTC-------A-AAGAAAATAGGGG-A-------A-----AC--GTCTGTCCTTA---------T---T---AA---------------------GT-ATAATAAATA----CATCTG-AAAT-GAGGCCAA-CAAC-ATGGCCGT-
gi|16 : TGTT--TTCTCATAGATTTCAAATTTG-AATT--ACC-AAACGAGCCTATTTTC-CAAAGATC-------A-A---------AGG-T-------A-----ATA-G---GGCA--------------------AAAA---GTT-AACAAA--AACGAT-ATacccgggaggggggtgcgcc
gi|2 : GTGGATTCAAGG----GGGAG------GTTGCAATCCCCC---------------TTTGAAAATCAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATAGTACATATATA-TTATTG-TTTTAAAGAAATGTT--TTATCATAGATTTCAAATTTA-AATT--AAC-ACATCAGCCTATTTTC-CAAAGGTC-------A-A---------TGG-A-------A-----AT---TCT-TTATTA---------C---T---AAAA---TTT-ACCAAA--AACGAA-ATAGTGAATATATACATCTG-AAAT-GAGGCCGA-CAAC-AAGGCCGT-ACGG
gi|3 : GCGGATTCAAGG-CCGGGGAGTTGGTGGTTGCAACCCCCCCCCCCCCCCCCCCATTTTGAAAAATAAACCAAAATACAGAAAACAAAACCAAGCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-TTACTG-TTTTAAAGAAA---T--TTG-----------------A-AATT--A---ACATGAGCCTATTTTCAAAAAGGTC-------A-A---------AGG-AAATATGTA-----AT--GTCTGTCCTTATAAGTATGGC---TCTAAAAA---GTT-AACAAA--AACGAT-GTGGT
gi|4 : ACATGT-TACTTACCG-TTT-AAAGAAATGTTTATTGTTA---AT----ACTTTGAAATT--AGC-CTATTGACCTATTTTA-CAAATGTA-------ATA---------GGGCA-------AAAATTAT--GT---TCATTA---------G---T---AATATTGTTT-CTTAAATTATCGATAAAAGTGAATA----CATCTGTAATT-GAAGCCGA-CAAC-AAGACCGTAACGG
gi|6 : ataACTG-TTATAA-GAAATGTT--T-GTCATAGATTCCAAATTTG-AATTTAAAA-AAACGAGCCTATTTTC-CGAAAATCA------A-A---------AGG-A-------A-----AT--GGGCAATATTA---------CGGTT---CAGA---TTT-AAC-AA--AACGAT-ATAGTG---A-ATGCATCT---AATGGGGGCCAATCAACAAAGGCCTT-ACgggggggggggggggggtggggggggggggggggggggggtgggggggggggggtcgtgggggggggggggggg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACTGCTACCTATAGTAAAAAATTCAGTGCAATATTTATTGTAAGTTATTGGATGTTGATAAAGTACTAACCTGTGACTCATACTTGAGTCAGCTAAGGCTTGTAACCAGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGACGGGGGGGGGGGGGGGGGGGTGGGGGGGG
Unaligned ( gi|7 ): AATTAAAAGGTACAGAGACTACTTTAATTATGGTAATACCATAAACTACTAATTATAGAAGGTCCATTTCAAAATTAGTACCACAAGTTAATGGAGATAAAGACTGAAGTGAATGGTTAAGCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|8 ): AGCAGTCATGTTTGTTGCAATATAATTGTTTCAAATACTTCAGTTAATAGTTGTAATTGCTATAGGACACACAGTAATCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|9 ): GAGTGCAATATTCACAAGGTACTTGTAGTTACATGTGTGTGAATCAAGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|11 ): AGAGCTCAACCTTCGACATCTGTTTACAAGCAGTGTTAACCAATGAAAAAAGAGGATGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): TGACCTATATTACCTTAAAAAATTCAATAGGGTAACCATCTTCTTCTTCGTCCATAAATTTGTATCCATATATTTGTATATATCAGGTGACTCGTACTAGGTGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|14 ): GGTAATTTTTTACTATTAAAATCGTAAGCATGGTTATTGGAATCACACCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|15 ): AAGACACATTGTAGATACGATGTATCGGCGATATCGTCTAACAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|17 ): TTGTTTTTTCAATTAACTGTCAAGGTTTTGGAATTCAATTCTGAAATTGGAAGGTCCGGACGAGACCGTAACGGGGGGGCGGGGCGGGGGG