lowQualScore : 222222222222222222222222222222222222222222222222222222222222 44444444444444444444444444444444444 11111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 4 1 1 1 11 1 2222222 22 22222 1 222 2222222 444444444 2 22 444444 1 11 3333333 11 5555555 2 2 1 11 333 666666666666666666666666666666666666666666666666666666666666 2 1 4 777777777 333 2 2 1 444 2222 33333 22 1 2 1 00000000000000000000000000000000000 6666666666 33 1 999999999 11 1 2 2 1 4 1 77777777777 11111111111111111 66666666666666666666666666666666 222222 1 333 1 222222 33333 11 999999999999999 1 11 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4444 1 1 1 1 11 22 2 2222 2222 99999999999999999999999999999 2 2 66666666666666666666666666666666666666666666666666666666666666666666 2 5555555 333 1 33 4 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 333 2 33 2 2 00000000000000000000000000000 777777777 11 333 1 1 1 2 66666666666 333333 66666 1 1 1 2 3333 33333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 222 2 1 2 1 1 11 333333333333 5555 1 111 11 33333333333 1 1 33333333 1 777777777777777777777777777777777 11 1 222 11 333333333 11 1 1111111 3333 666666666666666666 44444444444 2 222 11 11111 1111 5555555555555555555555555555555555555555555555555 11 2222 3 11 22222 111 2 1 22 5555555555555555555555 111111111111 33333333333333333333333 2 2222 1 1 33333 22222222 11 222 111 2 1 11
lowQualScore : 6 0 2 6 3 3 3 88 0 0 5 0 8888888 22 88888 3 333 9999999 333333333 6 0 2 7 00 888888 3 88 1 0000000 44 0000000 6 6 6 4 7 3 88 888 4 777777777777777777777777777777777777777777777777777777777777 0 5 0 666666666 000 0 0 5 666 4444 77777 6 77 5 0 5 88888888888888888888888888888888888 2 6666666666 00 5 666666666 88 5 0 0 7 6 0 5 66666666666 3 44444444444444444 11111111111111111111111111111111 777777 0 555 0 888888 3 66666 44 000000000000000 2 33 7 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333 3 5 888 6 1 4 88 66 0 5555 8888 33333333333333333333333333333 0 0 99999999999999999999999999999999999999999999999999999999999999999999 0 2 4444444 4 888 6 6 00 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 555 3 0 00 55 0 0 77777777777777777777777777777 777 111111111 88 444 5 5 5 0 11111111111 999999 3 44444 5 6 5 0 6 5555 1 00000 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 333 0 0 2 0 0 2 3 33 999999999999 2 5555 9 2 0 777 33 0 00000000000 3 0 0 66666666 0 0 111111111111111111111111111111111 33 0 888 11 8 3 888888888 11 8 0 6 3333333 0 666 3 0000 111111111111111111 8 8 8 0 22222222222 4 5 3 222 66 00000 1111 8 8 9999999999999999999999999999999999999999999999999 8 33 1111 3 0 2 22 44444 9 3 111 7 3 3 0 0 33 6 8 1111111111111111111111 222222222222 0 5 44444444444444444444444 8 8 0 1111 0 0 2 33333 9 99999999 3 3 8 22 777 777 0 3 44
lowQualScore : . . . . . . . .. . . . . ....... .. ..... . ... ....... ......... . . . . .. ...... . .. . ....... .. ....... . . . . . . .. ... . ............................................................ . . . ......... ... . . . ... .... ..... . .. . . . ................................... . .......... .. . ......... .. . . . . . . . ........... . ................. ................................ ...... . ... . ...... . ..... .. ............... . .. . . ...................................................................................................... .... . . ... . . . .. .. . .... .... ............................. . . .................................................................... . . ....... . ... . . .. . ......................................................................................................................................................................................... . ... . . .. .. . . ............................. ... ......... .. ... . . . . ........... ...... . ..... . . . . . .... . ..... ................................................................................................... .. ... . . . . . . . .. ............ . .... . . . ... .. . ........... . . . ........ . . ................................. .. . ... .. . . ......... .. . . . ....... . ... . .... .................. . . . . ........... . . . ... .. ..... .... . . ................................................. . .. .... . . . .. ..... . . ... . . . . . .. . . ...................... ............ . . ....................... . . . .... . . . ..... . ........ . . . .. ... ... . . ..
lowQualScore : 7 0 5 7 3 3 3 33 7 7 0 7 7777777 77 33333 3 333 3333333 777777777 0 0 5 0 77 777777 3 33 0 7777777 00 0000000 7 7 7 7 3 3 55 000 0 555555555555555555555555555555555555555555555555555555555555 0 5 0 000000000 000 0 0 5 000 0000 55555 0 55 5 0 0 00000000000000000000000000000000000 5 0000000000 55 5 000000000 00 0 0 0 0 0 0 5 00000000000 0 55555555555555555 99999999999999999999999999999999 000000 0 000 0 888888 0 88888 33 333333333333333 3 33 3 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0000 3 5 555 0 5 0 55 00 0 0000 5555 00000000000000000000000000000 0 0 55555555555555555555555555555555555555555555555555555555555555555555 0 5 0000000 0 000 0 0 55 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 000 0 0 00 55 0 0 00000000000000000000000000000 555 555555555 00 000 5 5 0 0 00000000000 000000 0 55555 5 0 0 0 0 5555 0 77777 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 777 0 0 8 0 0 5 2 88 222222222222 0 8888 8 5 0 555 55 2 22222222222 2 0 0 22222222 0 2 555555555555555555555555555555555 88 0 222 22 0 8 444444444 22 0 8 0 2222222 8 888 8 8888 666666666666666666 0 0 0 8 22222222222 0 0 8 000 22 66666 4444 0 0 8888888888888888888888888888888888888888888888888 0 88 2222 2 0 5 22 55555 0 2 000 8 2 2 0 8 44 0 0 2222222222222222222222 666666666666 8 6 88888888888888888888888 0 0 4 2222 0 0 5 88888 0 88888888 2 2 8 55 555 555 0 3 00
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGAAAAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGATG-G--CGC-AC---ATGGT-G-A-G-GTGTTTAGACGCAG---GT-TTTTTAACGAAGATTGCTTTNAATTCGCTTGAAAA-TTGTGAA--NAA-CCGCG-CATGG--GGGAAT-TA-NA-AGTGACACAC----G--TACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAA-CAAAANTCACAAGAAAAAATNGTTGTACGTTGCNNGCTGCACCCGNCCTGTAGGCCTACTGCCGCTGCAGTTNCAATATTCAACNTAGAGAAAAACAGATCGGCAACGTCTCAAATG-TAAGTTGTTTTGTTTTATCATNCAATTGAATGTAAATTTAACTGTTGACAGTGTGGTATTAAGTTAATAGTACATGCATATAAGTTCTCAAACCGAGAATAGCACGTCTTATGCA------------------------CATAGCCCATACCCCNCCCCCCNTTCACCA--CACACGCACCCCTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATNATCCCCCCACCCATTCAACCTTCGTTAGGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTTCGANTCGAGATGACCGAGATTCCNAAACAANTTTTTTTGTTTNTGTTGAAAAA----------CGAG--GGGGGGGGGTA-CA--TTATGTAT-----G-TGTACACTA-CATGTGTATAAGATCTA------TCTNCA----GTGACG-TATACGATAACCTA-T-TAC----GTA--TACTCCTGGTGCCCGTGATAATAAATAAATGTCGTGT-------AA-CTAA-ATT-T-T----TACAA-GATCT---------GG-TG-TG--------TAC-TGTATACA---GTGT---CT-AAT--G---TG----ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATGTACNNNATAGTGTGNTAANTTAAATTATGATCAGGATCGACTTTTATATATTTTTGGCCATCTCATGATCTATTATAAAANAATCTCNNATTAACGCATATCTAAAGTCATTTTCNNTAAATCANCATTTAGGGTCAACTNGTANNNNANTTTAAAATTTTACAACATACATATGTACATGTATTTTGCAGGNTTTTGGTTCTGAGATATCNTGTNCTTATTACCTGCACAGAGCACANCCACACATATTCA-ACGACTGCAAAGATTTTAAAGAATGCAAGGTTTCAGTGGTCATATCAGAATGCAAAGTTTCAATAGCCAATATCAATTTCGGTTGGTCAA-AGATTTTNANAAACTCAATAATAGAATTATT--------ATNTCNCTATGT--CATT---TATT---TT-GTAACA-----AATGCT---------TCAT-AATTTAGATATTTACAGNGCAAGACTGAGTTCAGAATAGATTNGTTCAAAANNAAGACCTATTGTTTGCAATGAAATGTATATAGACGGAAAACGGAATACTACACTGGGGGGGGNNNGTCGAAGATCCTAAAATGACAACAAAAAGAATATCNANTTCTTAATAATGTTGAAAGCTGCCTCAGNTNGGTGAAGGNNTTAGGATNTATTGTCCCCTCTAA-AGATCCAGCACTGCATCCCTGATATCTGGCCCGATATTTAATTTATGAGCCCCTCT-CATTTTTC--GTGC-----CTAAATACAA-G--------GT-NATGTTT-GTGCATAGTATGATG---TTT-TAAAAGATATATCGTT-------AGCA-TCT-TTCTAAA--TGTGCATG-CTTTGTCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGT----TCTTTTTTTACAGAT-TCATTTGATAATACTTG-GT---ACCGGCAGCA-TTT---TAA-GTCAAAGAA-CC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGTN----G-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-AG-GCTGTTTTN-GTA-T-TTTA---C-AATGT-GAACC-TT-GCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-AT-ATCTGTGCAAA-TT-CCC-AAG-------TA-T---GT-A----A------AAG-AAGGAAG---------G-ACATGAC----AAAAGAATTGCAATTATTTTAACACTGATGA-GGC----AGAGACATT-A-TTTTGGAATC-AAGAATTTTTATATT-TCAAGCACTATGC-ATTGA----TC------AATTTGAATAAATATATATATTTG-CCAATATTGACT---T-----ATG--ATC-T-TGTT-TTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCTG--AC---TGTATTTATATAT-TTGTTTATAAATAGAATGAATTATAC
Reference ( gi|1 ) : TTCAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGATG-G--TGC-AC---ATGGT-G-A-G-GTGTTTAGATGCAG---AT-TTTTTAATG-AGATTGCTTTGAATTCGCTTTAAAA-TTGTGAA--GAAACTGCG-CATGG--GGAAAT-TA-TA-AGTGACACAC----G--TACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAA-CAAAATTCACA-GAAAAAATAATTGT---T-ACTT--TGC--------TGTAGGCC-----CCATT-CAAC--CAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT----T----TATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATA-AAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCC--C-CCAAACACACGCAACCCTTCAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT-GAAT----ATGACCGAGATTCCAAAA--AATGTGT--GTTTGCGTTGAAAAA----------CAAG--GGGGGGGGGCAACA-ATTATGTAC-----G-TGTA---TA-CATGTGTATAAGATCTA------TCTACA----GTGACA-TATACGATAACCTACT-TACCTTGGTAC-TACTTCTGGTGCCTGTGATGATAAATAAATGTCATGT-------AA-CTAA-ATTTTGT----TACAA-GATGT---------GG-TG-TGTACTACTGTACATGTATACA---GTGT---CT-AATTGG---TGG---ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTG-CCATGGCATGATCTATTACAAAACAAT-TCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAA--ATTATTTAG--TCAATTTGT---------------TTTACA-----------TACATG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACATAACACAAACACACATATTCATATGACTG-----------------GCAAAATTTTAA----------A--------------------------CAAT----G-----CAACAGATTTTTTTAA-CTCAATAATAGAATTATTTTATGTTCATATTATT-TGTAACATTGTGTATTGCATCAGTAAAATATATAATGTTATTTTGCTTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GATTGCTTCAAAACAAAA-CCTATT-TTTGCAAT----------TAAA------AC----TA-TACACTGGGGGGGGGGGGGGGAAAA--CTAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTGAA-GCT--TTGAGGTGTGTGAAGGTG--AGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAGT--TAAATTTATGAGTCCTAATGCATTTTTT--ATGC---TTCTAAATACAA-A--------GT-GATGTTT-GTGCAT------------TTT-TAAAAGATAAATTGTT-------A-TA-TCTCTTCTAAA--TGTGCATG-CTTTGTC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGT----TGTTTTCTTACA-ATGTCATTTGATAATACTTG-GT---ACAGGCAGCA-TTT---TAA-GTCAAAGAA-TC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGTT----A-TT--AGATCAA-CCT--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTGTTT---GTA-T-TTTA---C-AATGT-GAACC-TT-GCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-AT-ATCTGTGCAAA-TT-CCC-AAG-------CA-T---GT-A----A------AAG-AAG--AG---------G-ACAAGAC----AAAAGAATT-CAATTATTTTAACACTGATGA-AGC----AGATACATT-A-TTTTGGAATCAAAGAATTTTTATATT-TCAAGAACTATAC-ATTGA----TC------A---TGAGTAAATATATATATTTG-TCAATATTGACT---T-----ATG--ATC-T-TG-T-TTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAAATAGAATGAATTATAC
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCA-TGA--CCTCCGTCAAAACA-CCGATG-G--TGC-AC---ATGGT-G-GTG-GTGTTTAGATGCAG---ATGTTTTTAACG-AGATTACTTTCAATTCGCTTGAAAAATTGTGAA--TAC-CTGCG-CATGG--GGGAATGTAACA-AGAG-CACAC----GGTTACCCAGAAAGGATAGTAGGAGTGAGA-TACACCCCATTTTCAGAA-CAAAAGTCACA---AAAAATAATTGT---TTACGTGCTGCACCCAG--TGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTTTT----TATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATA-AAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CAT-GT--ATACCCTCCCCCCCA--CACCA--CACACGC--CCCTTCAACCTAATGAAA-GTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAGATGACCGAGATTCCCAAA--ATTTTTTTTGTTTCTGTTAAAAAA----------AAAA--GGGGGGGGGTCTTA-CTTATGTACTGTATG-TGTA---TAACATGTGTATAAGATCTACATGTATCTAC-----GTGACG-TATACGATAACCTCCTATAC------AA-TACTTCTGAGGCCTGTGA-AATAAATAAATGTTGTGT-------G---TA------TGTAACCTACAA-GAGCT---------GGATG-TG---------AT-TGTATACAAT-GTGT---CTTAA---G---TGT---ATGCATCAGGCC--AGTATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCAG-ATCGACTT--A-ATATTTTTGGCCAT-----------TTA--AAAGAAT-T-ATATTAACACATATCTAAAG-CATTTTCAT--AA--ATCATT-AGGGTCAATTTGTAGAACAATTTAAAATTTTACA------------ATAT--ATTT-GTAGGTTTTTG-------GATATCTTA-A-TTATTACCTGCACAGAGCACAC-CACACATATTCA-ACGACTG------------------CAAGATTTTAA----------AGAATGCAAAGTTTCAATAGCCAATATCAAT----GTTGGTCAA-AGATTTTAAAAA-CTCAATAATAGAA--ATT--------ATCTTTTT-T----CATT---TATT---TT-GTAACA-----AATGCT---------TCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATTG-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAAAC----TA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAA--ATATCCAATTTT-AATAATGTT-AA-GCTGCCTCAGGTTGGTGAAGGGG--A-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCGAT--TTAATTTATGAGCCCCTCT-CATTTTTTTTATGC---ATCTAAATACAATG--------GT-TATGTTT-GTGCATAATATGATGATATTTATATAAGATATAT-GTT-------AGCA-TCT-TTCTAAA--TGTGCATG-TTTTGTC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGT----TCTTTGTTTACAGAT-TCATTTGATAATACTTG-GT---ACA-GCAACA-TTT---TTA-GCC-AAGAA-CC-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGTA----G-TT--AGACCCA-CC---TATC--AC-AGGCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT--------TA-T-T------------T-GAACC-TT-GCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------TAAG-TT-CCC-AAGTACAAACTA-T---GT------A------AAG-AAGGAAGGACATGATCG-ACAAAACTCAAAAAAGAATTGCAATCATTTTAACACTGATGAGAGCTGTGAGAGACATT-A-TTTTGGAATC-AAGCATTT---TATT-TCAA-CACAATGC-ATTGA----TCAATAATA---TGAA-AAATAT-CCTA--TG-CCAATA-TGACTTAAT-----ATG---TC-TATT-T-TTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAAATA-AATGAATTATAC
gi|11 : CAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAAC-ACCGAT--G--TGCAACCCAATGGTGG-A-GCGTGTTTAGATGCAGGACGT-TTTT
gi|16 : cT-CACGCTTCCACGTCGTCAGGGGAG
gi|8 : atGGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA---CTCCGTCAAAACACCGGATGTGGCCGC-AC---ATCGT-GAA-G-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAA--G-ACCTGCGCCATGG--AGGAAA-TG-TA-AGTGACACACG---G--TA-CCAGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAA-CAA
gi|3 : TTTAAA--CTGTAAACTAAAGTCGTA-AATGGTGGGAAAT-GA-AACAGTGA-ACACCACGG--TACCCAGAGAG-ATATG-GGAGTGAGATTATACCCCATTTTTAGAAACAAAAT-CACAAGAAAAAATTGTTGTACGT-GCTG--TGCATTAGCCCTATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT----TGTTTTATTA-TCAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTA-GT-AATAATACATG--TATAAGTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCA--CACACGCACCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT-GAG-----A-GACCGAGATTCCAAAACAAAT---------TG-GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGGGTAA-----TATGTAT-----GGTGTA---TA-CATGTGAATAAGATTTA------TCTAC-----GTGACG-TATACGATAACCTAAT-T----TCATA---ACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAAA-CTAAGATTTTTG----TACAA-G-TCTCAGAGAGCGGG-TGATGTAGTA---TAC-----CACA---ATGTGCATT-GATTGAGTATGGCCTATGCATCAGGCCTAC-TATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT--G-CCATCTCATGATCTATT-TAAAACAATCTCCA-TTAA-GCATATCTAAAATCATTTT-CATAAATCAACATTTAGGGTCAACTAGTACTTAAC--------TTTACAACATACATATGTACATGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACTGCAAAGATTTTAAAGAATGCAAAGTTTCAGTGGTCATATCA--------------------------CAATTTCGGT----CAA-AGATTTTTATAAACTCAATAATAGAATT------------TATCACTATGT--CATT---TATT---TT-GTAACA-----AATGCT---------TCAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTGTTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAGA------ACGGAATACTACACTGGGAGGGGTTCG---AAGATCCTAAAATGACAACAAAAAGAATATCA-TTTCTTAATAA-GTTGAAAGCT--T--AGTTG-ATGAAGGTCTTAGGATTTATTGTCCCCTCTA---GA-CCAACACTGCATCC-TGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CATTT-------G--------AAATACAA-ACAATTATGGTTAATGTTTAGTGCATAGTATGATATATTTT-TAAAAGATATATTGCT-------AGCAGTCT-TTCAAAAAATGTGCATGGCTTTGCCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTTTTCCTTTTTTTTTTTACAGATTTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAA-TC-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTC-ATG-ATCA-ACTCCAAGTA----ATTT--AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAA-----ACACCA-AG-GCTGTTTTG-ATA-T-TTTAC--C-AATTT-GAACC-TTGGCAAC--A-----T-GTACTTTGTTGGGGAG--TTTTG-AT-AT-TGTGC-AA-TT-CCCAAAG-------TA-T---GT-A----AGTTTTTAAG-AAGGAGG---------G-AC-TGAC----AAAAGAATTGCAATTATTCTAACACAGATGA-GGC-----GAGACA-T-A-TTTTGGAATC-AAGAA-TTTTATATTATCAAACAGTATGC-ATTGA----TC------AATTTGA-TGACTA-------------AATATCGACT---TAACAAATGATATC-T-TGTT-TTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
gi|8 : AGAA----------CAAG--GGGG--------CACATTATGTAT-----G-TGTACACTA-CATGTGTATAAGATCTA------TCTCCA----tagaattatatatgatata
gi|10 : ggggaggtggagttacccatcttcgacacaggccaatcagaatcgcggaaaaattgttcaccatgactccgtcaaaacaccggatgtggccgcacatcgtgaaggtgtttagacgtttttaacgaaaattgctttgaattcgcttgaaaattgtgaagacctgcgccatggaggaaatgtaagtgacacacggtaccagaaaggatagtaggagtgagattatccttattttcGGGGGCA-CA--TTATGTAT-----G-TGTACACTA-CATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCTA-T-TACCT--GTACATACT-CTGGTGCCTGTGATAATAAATAAATGTCATGT-------AACCTAA-ATT---T----TACAATGATG----------GA-TG---------TGTACATGTATACACATGTGT---CT-AAT--G---T-----ATGCATCAGGCCT-A-TATGCAGTAAAGAAtgtagttgtagtatacaa
gi|6 : acaaGTCATAATGCAGTTTTC--GTGCACGTGCTCA-TATAA-----------T-GA------GTG--T------------TTT-TAAAAAGTATATCATTTACACCCA-TA-TGAATTTTAAGC-TATGCAT---TTAATCTCTAT-ACTTA-TT-GACA-TTTGCACAATGC-AAAAAAT--ATT------------TTTTTCCACAGAT-TC-TTGGATAATACTTG-GT---ACCAGTAGCA---G---CAA-GTCAAAAAA-CCTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAG-CTGAAGATCAACCCC--CACCATAC-AGGTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA--GGTGTTTTTCTTA-TGTTTG---CAAATGTGGAACCTTT-GCAAC---ATGTCT-GTATGTTG-T-TAGATCTTTTTGTAT-ATCAGTGCAAAGTT-CCC-CAG-------TA-TCGCGT-AATATA------AAA-AAT--AG---------G-Atat
gi|4 : tctatgagcgactctaaacttttttaaaac-CAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGT----TCTTTTCTTACAGAT-TCATTT-ATAATACTTGCGT---ACAGCAAGCAATTT---TAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AA-----------------T----A-TT--AGATCAA-CCC--TATCA-AC-AAGCTAT-CCTTTT-C-CCGGCAAAA---AAT-ATTC-TACTACAATAG-AAAAAATATAACA-AG-GCTGTTTTG-GTATT-TTTATACC-AATGT-GAACC-TT-GCAAC---ATG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGC--A-TG-TCC-AAG-------TA-T---GT-A----A------AAGAAAG--AG---------G-ACATGAC----AAAAGAATTGCAATTATTTTTA-ACTGATGA-GGC----AGGGACATT-ATTTTTGGAATCAAGAATTTTTTATATT-TC-AGCACTATGCAATTGA----TC------AATTTGATT--ATAAATATATTTG-CCAATATTGACT---T-----AGT--ATC-T-TGTT-TTG-TGTTGG-ATTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAA--------AAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAAATAGATTGAATTATACggaacatgtccaacaaaaatttgaaatatcgttatccaaccaactgtttgagtctaagacatatttaagaagcttgacattaatattctattctcaagcgtaacaatttaacaact
gi|5 : -AC-AAGCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTGTTTTTGGTA-T-TTTA---CCAATGT-GAACC-TT-GCA-C--AATG--TTATACTTTG-TTG-GA---TTTTT-AT-ATCTGTGCAAG-TTTCCC-AAG-------CAAT---GTTA----A------AAGCAAG--AG---------GGACATGAC----AAAAGA-TT-GCATTATTTTAACACTGATGA-GGC----AGATACATTAA-TTTTGGAATC-AAGAATTTTTATATT-TCAA-CACTATAC-ATTGATCATTC------A---TGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTC-T-TGTT-TTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAAATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|5 : CAAGAAC-ACAA-GTCAA----TA------T---TGAACAAATATATATATTTA-TCA----TGA-----------ATG--ATCAA-TG-TATAG-TGTTGAAATtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|13 ): TAATTAATGAACCCCTCTCAACTGTTTTAAAGCTTCTAAATGCAATGGTTGTGTATGTGCACAATATGATGGTGTTTTAAAAGATATAATTGCTAACACACTGTGGACGAACAACATGCAT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111 111111111111111111111111 111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333 11111111111111111111111111111
lowQualScore : 1 1 1 11 11 1 111 11 1 111 1 2 1 222222 11 1 2222222 1 11 111 1 11 1 1 22 1 111111111111111111 55555 3333 11 1 888888 22 2 11 11 11 22222 33 2 222222222222222222222222 11111 1111111 1 777777777 11 2 444444 444444444444444444 6666666666666666 22222222222222222 222 222222 11 2222 2 55555555555 1 11 3333333 1 2222222 11 1 666666666666666666666666666666666 1 333 777777777777777777 111 1 2 222 22222222222222 3333333 2 2 333 11 111111111111111111111111111111111111111111 33 1 1 1 1 11 6666666666666666666666666666666666666666666666666666 1 111 111111 1111111 33333 00000000000000000000000000000 1 1 333 2 1 11 2 99999999999999999999999999999 222 22 1 1 2222 1 3333 1111 2 1111 777777777777777 1111 44444444 22222222 66666 1 11 111 1 1 1 1 1 11 22222 111 22222 22222222 1 11 222222222222 11 11 222222222 1 1111 1111 22222 1111111111 111 4444444444444444 111111 1111 3333333333333 11111 11111 1 111111 111 3333333 1111 11 222222222222222 2 1111 2222 22222222 2222 111 1
lowQualScore : 3 3 2 2 0 0 0 33 2 3 33 2 0 777 2 22 0 777 0 0 0 2 2 888888 44 1 3 6666666 2 0 33 777 1 0 33 0 0 33 2 2 2 7 9 3 1 7 1 6 3 000000000000000000 11111 11 6 7 1 7 8888 0 44 0 7 3 222222 11 3 44 44 99 88888 00 7 3 6 888888888888888888888888 66666 1 9999999 6 2 0 111111111 88 22 6 6 3 0 0 0 6 7 000000 7 1 000000000000000000 2222222222222222 44444444444444444 8 333 333333 1 88 1111 0 55555555555 0 2 3 3 33 2222222 0 8888888 33 0 222222222222222222222222222222222 0 111 444444444444444444 444 0 88 333 3 1 1 7 7 3 7 7 111 11111111111111 1 1111111 3 3 444 7 77 6 0 1 333333333333333333333333333333333333333333 1 00 88 4 3 4 3 0 3 7 6 88 0 3333333333333333333333333333333333333333333333333333 3 444 7 999999 1 1111111 33333 11111111111111111111111111111 3 3 7 777 1 3 4 22 99 3 11111111111111111111111111111 000 22 7 4 1 2 7 6 7 7777 3 4 1 2222 0 1 5555 6 3 6 3 9999 8 555555555555555 7777 55555555 8 1 8 44444444 22222 8 8 9 6 8 0 33 777 0 0 0 0 5 8 88 8 0 11 8 5 00000 8 88 8 444 22222 88 0 8 8 99999999 8 88 0 33 0 8 999999999999 11 8 11 77 6 1 000000000 66 6 3 2 2 3 1 0000 6 6666 6 6 55555 6 6 1 8888888888 888 6 6 2 7 6 6 6 1111111111111111 6 6 999999 6 3 4444 6666666666666 3 66666 99 6 6 77777 7 3 111111 6 222 1 6 9 8 2222222 4444 11 0 66 99 0 666666666666666 0 8 0 7777 8 8 5555 22222222 0 0 5 66 5555 444 0 8 8 55
lowQualScore : . . . . . . . .. . . .. . . ... . .. . ... . . . . . ...... .. . . ....... . . .. ... . . .. . . .. . . . . . . . . . . . .................. ..... .. . . . . .... . .. . . . ...... .. . .. .. .. ..... .. . . . ........................ ..... . ....... . . . ......... .. .. . . . . . . . . ...... . . .................. ................ ................. . ... ...... . .. .... . ........... . . . . .. ....... . ....... .. . ................................. . ... .................. ... . .. ... . . . . . . . . ... .............. . ....... . . ... . .. . . . .......................................... . .. .. . . . . . . . . .. . .................................................... . ... . ...... . ....... ..... ............................. . . . ... . . . .. .. . ............................. ... .. . . . . . . . .... . . . .... . . .... . . . . .... . ............... .... ........ . . . ........ ..... . . . . . . .. ... . . . . . . .. . . .. . . ..... . .. . ... ..... .. . . . ........ . .. . .. . . ............ .. . .. .. . . ......... .. . . . . . . .... . .... . . ..... . . . .......... ... . . . . . . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . ...... . ... . . . . ....... .... .. . .. .. . ............... . . . .... . . .... ........ . . . .. .... ... . . . ..
lowQualScore : 2 2 0 5 0 0 0 88 5 2 88 5 0 555 5 00 0 555 0 0 0 0 5 888888 77 0 3 2222222 0 0 88 000 0 0 22 0 0 88 5 5 5 0 8 2 0 3 0 7 3 777777777777777777 00000 33 7 3 0 3 7777 7 77 7 3 3 333333 33 7 77 00 00 00000 33 3 3 7 333333333333333333333333 77777 0 7777777 7 0 7 000000000 33 77 7 7 7 7 7 7 7 3 333333 3 0 777777777777777777 0000000000000000 66666666666666666 0 888 000000 0 66 2222 0 88888888888 5 0 2 2 88 5555555 0 0000000 88 0 555555555555555555555555555555555 0 222 888888888888888888 888 0 00 000 7 0 0 3 3 3 3 3 333 33333333333333 0 0000000 3 7 777 3 77 7 7 0 333333333333333333333333333333333333333333 0 33 33 0 7 0 3 7 3 3 7 33 7 5555555555555555555555555555555555555555555555555555 3 777 3 333333 0 3333333 33333 00000000000000000000000000000 3 3 3 333 0 7 0 00 33 3 33333333333333333333333333333 777 33 3 0 0 0 3 7 3 3333 7 0 0 7777 7 0 7777 7 7 7 3 3333 0 444444444444444 0000 00000000 0 0 0 22222222 00000 0 0 6 4 0 0 88 555 0 0 0 0 5 0 88 0 8 00 0 0 00000 0 88 0 000 88888 88 8 0 0 00000000 0 22 6 00 6 0 222222222222 00 0 00 55 7 7 777777777 33 7 3 5 5 2 7 8888 7 5555 7 7 88888 7 7 7 5555555555 333 7 7 5 3 7 7 7 8888888888888888 7 7 222222 7 2 2222 7777777777777 5 77777 22 7 7 77777 3 3 888888 7 555 7 7 3 0 2222222 4444 66 6 22 44 8 888888888888888 8 0 4 0000 0 0 0000 00000000 8 8 0 44 2222 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAAGATTGCTTTGAATTCGCTTG-AAAATTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-T-ATA-AGTGA-CAC-AC-GG-TACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGT-GC----TGCACC-G---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACAACGTTTCAAATG-TAAGTT------TTTTATCATACAATTGAATGTAA-TTTAACTGTTGACAGTGTGGTATTAGGTTAATAGTACATG-ATA-AAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCACCCCTTCAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATCTCCCCACCCATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT-GA-T-GAGATGACCGAGATTCCAAAA-AA-TTT-T-TGTTT-CGTTGAAAAA----------CGAG--GGGGGGGGG---CA-CA-TTA-----TGTATG-TGTACACTACATGTGTATAAGATC------TATCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-A-TACTTCTGGTGCCTGTGATAATAAATAAATGT--CGTGT-------AA-CTAA-ATTT--TT--ACAA-GATCT---------GGATG-TGTAC---------TGTAT-ACA---GTGTCTAAT--G--------T-G----ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCA-GATCGACTTTTATATATTTTT-GCCATN-CATGATCTATT-TAAAACAAT-TCATATTAA-GCATATCTAAAG-CATTTTCA-TAAATCA-CATTTAGGGTCAATTTGTA-----------AATTTTACAACATA------TACATG-A-TTTGCAGGGTTTTG--TCTGAGATATCATGT-CTTATTACCTGCACANAGCACAACCACACATATTCA-ACGACT-GCAAAGATTTTAAAGAATGCA--AAGTTTCAGTGGTCATATCA----GC-------CAATA-------TCAATNTCGGT---TCAA-AGATTTTTATAAACTCAATAATAGAATTATT-TATNTTTATGTCATTT-----ATTTTGTA--------ACAAA----------------TGCTT-CAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-GTTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAG-----AAAC----TA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTGAAAGCT--CTNAGGTTGGTGAAGGTG--AGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGGTATTTAATTTATGAGCCCCTCT-CAACT-TTTTTATGCTTCTAAA----TACAAT-------GG-TNATGTTT-GTGCA-----TAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTG-TTTT-G-TA-T-TTTA---C-AATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-AT-ATCTGTGCAAA-TT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTTGGAA--T---C-AAGAA-T-TTTTATATT-TCAAGCACTATGC-ATTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTC--T-AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGAAAAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGC-GC-AC---ATGGT-GA-G-GTGTTTAGACGCAG---GT-TTTTTAACGAAGATTGCTTTNAATTCGCTTG-AAAATTGTGAAN---AA-CCGCGC-ATGG--GGGAAT-T-ANA-AGTGA-CAC-AC-G--TACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATNGTTGT-ACGTTGCNNGCTGCACCCGNCCTGTAGGCCTACTGCCGCTGCAGTTNCAATATTCAACNTAGAGAAAAACAGATCGGCAACGTCTCAAATG-TAAGTTGTTTTGTTTTATCATNCAATTGAATGTAAATTTAACTGTTGACAGTGTGGTATTAAGTTAATAGTACATGCATATAAGTTCTCAAACCGAGAATAGCACGTCTTATGCA------------------------CATAGCCCATACCCCNCCCCCCNTTCACCACACACGCACCCCTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATNATCCCCCCACCCATTCAACCTTCGTTAGGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTTCGANTCGAGATGACCGAGATTCCNAAACAANTTTTTTTGTTTNTGTTGAAAAA----------CGAG--GGGGGGGGG---TA-CA-TTA-----TGTATG-TGTACACTACATGTGTATAAGATC------TATCTNCA-GTGAC----GTATACGATAACCTA-TTAC----GT--A-TACTCCTGGTGCCCGTGATAATAAATAAATGT--CGTGT-------AA-CTAA-ATTT--TT--ACAA-GATCT---------GG-TG-TGTAC---------TGTAT-ACA---GTGTCTAAT--G--------T-G----ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATGTACNNNATAGTGTGNTAANTTAAATTATGATCAGGATCGACTTTTATATATTTTTGGCCATCTCATGATCTATTATAAAANAATCTCNNATTAACGCATATCTAAAGTCATTTTCNNTAAATCANCATTTAGGGTCAACTNGTANNNNANTTTAAAATTTTACAACATACATATGTACATGTATTTTGCAGGNTTTTGGTTCTGAGATATCNTGTNCTTATTACCTGCACAGAGCACANCCACACATATTCA-ACGACT-GCAAAGATTTTAAAGAATGCA--AGGTTTCAGTGGTCATATCAGAATGCAAAGTTTCAATAGCCAATATCAATTTCGGTTGGTCAA-AGATTTTNANAAACTCAATAATAGAATTATTATNTCNCTATGTCATTT-----ATTTTGTA--------ACAAA----------------TGCTT-CAT-AATTTAGATATTTACAGNGCAAGACTGAGTTCAGAATAGATTNGTTCAAAANNAAGACCTATTGTTTGCAATGAAATGTATATAGACGGAAAACGGAATACTACACTGGGGGGGGNNNGTCGAAGATCCTAAAATGACAACAAAAAGAATATCNANTTCTTAATAATGTTGAAAGCTGCCTCAGNTNGGTGAAGGNNTTAGGATNTATTGTCCCCTCTAA-AGATCCAGCACTGCATCCCTGATATCTGGCCCGATATTTAATTTATGAGCCCCTCT-CA--T-TTTTCGTGC--CTAAA----TACAA--------GG-TNATGTTT-GTGCA-----TAGTATGATG-----TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----NG-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTG-TTTTNG-TA-T-TTTA---C-AATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-AT-ATCTGTGCAAA-TT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAAGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTTGGAA--T---C-AAGAA-T-TTTTATATT-TCAAGCACTATGC-ATTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTC--TGAC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGA-GATTGCTTTGAATTCGCTTT-AAAATTGTGAAG---AAACTGCGC-ATGG--GGAAAT-T-ATA-AGTGA-CAC-AC-G--TACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTTTGC---------------TGTAGGCC-----CCATT-CAA--CCAATG--CA--GGAGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--------TTATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATA-AAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTTCAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT-GAAT----ATGACCGAGATTCCAAAA-AA---TGTGTGTTTGCGTTGAAAAA----------CAAG--GGGGGGGGG---CAACAATTA-----TGTACG-TGTA---TACATGTGTATAAGATC------TATCTACA-GTGAC----ATATACGATAACCTACTTACCTTGGT--ACTACTTCTGGTGCCTGTGATGATAAATAAATGT--CATGT-------AA-CTAA-ATTTTGTT--ACAA-GATGT---------GG-TG-TGTACTACTGTACATGTAT-ACA---GTGTCTAATTGG--------TGG----ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCA-GATCGACTTTTATATATTTTT-GCCATGGCATGATCTATTACAAAACAAT-TCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAA--ATTATTTA--GTCAATTTG---------------TTTTACA-----------TACATG-A-TTTGCAGGGTTTTG--TCTGAGATATCATGT-CTTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTT
gi|1 : ttCAACAGATTTTTTTAA-CTCAATAATAGAATTATTTTATGTTCATATTATTTGTAACATTGTGTATTGCATCAGTAAAATATATAATGTTATTTTGCTTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GATTGCTTCAAAACAAA-ACCTATT-TTTGCAAT----------TA------AAAC----TA-TACACTGGGGGGGGGGGGGGGAAAA--CTAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTGAA-GCT--TTGAGGTGTGTGAAGGTG--AGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAGT--TAAATTTATGAGTCCTAATGCA--T-TTTTTATGCTTCTAAA----TACAA--------AG-TGATGTTT-GTGCA-----T--------------TTT-TAAAAGATAA-ATTGTTA-TA-TCTCTTC--TAAATGT---GC-AT-GC-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTG-----TTTTCTTACA-ATGTCA-TTTGATAATACTTG-GT---ACAGGCAGCA-T---TTTAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TA-TT--AGATCAA-CCT--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT--G-TA-T-TTTA---C-AATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-AT-ATCTGTGCAAA-TT-CCC-AAG-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATTA-TTTTGGAA--T---CAAAGAA-T-TTTTATATT-TCAAGAACTATAC-ATTGATCA-------TGAGTAAATATATATATTTGT-CAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTC--T-AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATACttttaactcaataatagaattattttatgttcatattatttgtaacattgtgtattgcatcagtaaaatatataatgttattttgctttcattaatttgatattagagcaagactgagttcagaatgattgcttcaaaacaaaacctatttttgcaattaaaactatacactgggggggggggggggaaaactaaaatgacaacaaaaagaatatcccttttttaataatgttgaagctttgaggtgtgtgaaggtgagaatttattgtcccctctaatagatccatcactgcatccctgatattggcccagttaaatttatgagtcctaatgcattttttatgcttctaaatacaaagtgatgtttgtgcatttttaaaagataaattgttatatctcttctaaatgtgcatgctttgtccaatactgaattggcatttgcacaatattaaaaaatattcttgttgttttcttacaatgtcatttgataatacttggtacaggcagcattttaagtcaaagaatcacactcttcatcaacagagcatactgcgaatcaatcatcaactcagttattagatcaaccttatcaacaagctatcccttttaccggcaaaaaacaatattctactacaatagaaaaaaatataccaagctgtttgtattttacaatgtgaaccttgcaacaatgtatactttgtggagattttaatatctgtgcaaattcccaagcatgtaaaagaagaggacaagacaaaagaattcaattattttaacactgatgaagcagatacattattttggaatcaaagaatttttatatttcaagaactatacattgatcatgagtaaatatatatatttgtcaatattgacttatgatcttgtttgtgttggaattcagttccattgtgaccccataggaattttattaaattggctgaaatactaagtctactgtatttaatatttgtttataaatagaatgaattatac
gi|10 : ttcaatcacgctccacgtcgtcaggggaggtggagttaccatcttcgcacagccaatcagaatcgcgggagaattttccgcctgacctccgtcaaaacaaccgatggtgcacatggtgaggtgtttagatgcagattttttaatgagattgctttgaattcgctttaaaattgtgaagaaactgcgcatggggaaattataagtgacacacgtacccagaaaggatagtggagtgagaatataccccattttcagaacaaaattcacagaaaaaataattgttactttgctgtaggccccattcaaccaatgcaggagagaaaaacagatcgacacgtttcaaatggtaagttttatcaataattgaatgtaatttaactgtgacagtgtgtaattagtcaatagtacatgataaagttttaaccgagaatacacgtcttatgcacccccactccccaacacacgcaaccatagtccatacccccccccccccccaaacacacgcaacccttcaacccaatgaaaagtaaaataatgaaacaatgatttccccaccattcaccttcataaagttgctttgcgtggcagtttctgctgtaagtttgaatatgaccgagattccaaaaaatgtgtgtttgcgttgaaaaacaaggggggggggcaacaattatgtacgtgtatacatgtgtataagatctatctacagtgacatatacgataacctacttaccttggtactacttctggtgcctgtgatgataaataaatgtcatgtaactaaattttgttacaagatgtggtgtgtactactgtacatgtatacagtgtctaattggtggatgcatcaggcctcatatgcataaagaaattatatacaacatagtttgataatttaaattacgatcagatcgacttttatatatttttgccatggcatgatctattacaaaacaattcatttaagcatatctaaagcattttattaaaattatttagtcaatttgttttacatacatgatttgcagggttttgtctgagatatcatgtcttattacctgcacataacacaaacacacatattcatatgactggcaaaattttaaacaatgGGGGG---CA-CA-TTA-----TGTATG-TGTACACTACATGTGTATAAGATC------TATCTCCATGTAGTTGTAGTATACAATAACCTA-TTACCT--GTACA-TACT-CTGGTGCCTGTGATAATAAATAAATGT--CATGT-------AACCTAA-A-TT--TT--ACAATGA--T---------GGATG-TGTACA--------TGTAT-ACACATGTGTCTAAT--G--------T------ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAGCTTCTAAA----TGCAAT-------GG-TTGTGTAT-GTGCA-----CAATATGATGGTG--TTT-TAAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCG-CATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACG-AGATTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-AC-GGTTACCCAGAAAGGATAGTAGGAGTGAGA-TACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGT-----GCTGCACCCAG--TGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGAC-ACGTCTC-AATG-TAAGTTGT----TTTTATCATACAATTGAATGTAAATTTAACTG-TGACAAT---GTATTAAGTTAATAGTACATGCATA-AAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCA--CACCACACACG--CCCCTTCAACCTAATGAA-AGTAA---------TAATGAAACAATGAT-TTCCCA-CCATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAGATGACCGAGATTCCCAA--AATTTTTTTTGTTTCTGTTAAAAAA----------AAAA--GGGGGGGGGTCTTA-C--TTATGTACTGTATG-TGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCTC-CTAT----ACA-A-TACTTCTGAGGCCTGTGA-AATAAATAAATGTTGTGTGT-------AT-GTAA----C--CT--ACAA-GAGCT---------GGATG-TG-AT---------TGTAT-ACAAT-GTGTCTTAA--G--------T-GT---ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAAT--TGATCA-GATCGAC--TTA-ATATTTTTGGCCATT-------------TAAAAGAA--TTATATTAACACATATCTAAAG-CATTTTC-ATAAATCA----TTAGGGTCAATTTGTAGAACAATTTAAAATTTTACAATATA---------------TTTGTAGGTTTTTG-------GATATCT--TAATTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACT-GC-AAGATTTTAAAGAATGCA--AAGTTTCA------ATA-------GC-------CAATA-------TCAATGTTGG----TCAA-AGATTTT-AAAAACTCAATAATAGAA--ATTATCTTTTT---TCATTT-----ATTTTGTA--------ACAAA----------------TGCTT-CAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-GTTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAAAC----TA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAA--AATATCCAATT-TTAATAATGTT--AAGCTGCCTCAGGTTGGTGAAGGGG---AAATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCG--ATTTAATTTATGAGCCCCTCT-CATTT-TTTTTATGCATCTAAA----TACAAT-------GG-TTATGTTT-GTGCA-----TAATATGATGATA--TTTATATAAGATAT-AT-GTTAGCA-TCT-TTC--TAAATGT---GC-AT-GT-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTC-----TTTGTTTACAGAT-TCA-TTTGATAATACTTG-GT---A-CAGCAACA-T---TTTTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AG-TT--AGACCCA--CC--TATC--AC-AGGCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT---------TA-T-T------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------TAAG-TT-CCC-AAGTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATTA-TTTTGGAA--T---C-AAGCA-T-TT---TATT-TCAA-CACAATGC-ATTGATCAATAATA-TGAA-AAATAT-CCTA--TGC-CAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTC--T-AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAACTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-G-AAACAGTGAACACCAC-GG-TACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGT-GCTG--TGCATTAGCCCTATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT----TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTAG--TAATAATACATG--TATAAGTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCACCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT------GAGA-GACCGAGATTCCAAAACAAATT-----G-----GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGGG---TA--A-T-A-----TGTATGGTGTA---TACATGTGAATAAGATT------TATCTAC--GTGAC----GTATACGATAACCTAATTTC----AT--A--ACTCTGGGTTCTCGTGATAATAAATAAA-GT--CGTGTTTATGTAAA-CTAAGATTT--TTGTACAA-G-TCTCAGAGAGCGGG-TGATGTAG---------TATACCACA---ATGTGCATT--GATTGAGTAT-GGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT---GCCATCTCATGATCTATT-TAAAACAATCTCC-ATTAA-GCATATCTAAAATCATTTTCA-TAAATCAACATTTAGGGTCAACTAGTACTT--------AACTTTACAACATACATATGTACATGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACT-GCAAAGATTTTAAAGAATGCA--AAGTTTCAGTGGTCATATCA--------------------------CAATTTCGGT----CAA-AGATTTTTATAAACTCAATAATAGAATT----TATCACTATGTCATTT-----ATTTTGTA--------ACAAA----------------TGCTT-CAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTGTTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAG------AACGGAATACTACACTGGGAGGGGT---TCGAAGATCCTAAAATGACAACAAAAAGAATATC-ATTTCTTAATAA-GTTGAAAG----CTTAG-TTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCAT-CCTGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA--T-TT---G-------AAA----TACAAACAATTATGGTTAATGTTTAGTGCA-----TAGTATGATATAT--TTT-TAAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTT-TTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTC-ATG-ATCA-ACTCCAAGT----AATTT--AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAA-----ACACCA-A-GGCTG-TTTTGA-TA-T-TTTAC--C-AATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-AT-AT-TGTGC-AA-TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACA-TA-TTTTGGAA--T---C-AAGAA---TTTTATATTATCAAACAGTATGC-ATTGATCAAT--T--TG-ATGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTC-----TTTTCTTACAGAT-TCA-TTT-ATAATACTTGCGT---ACAGCAAGCAAT---TTTAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AAT---------------------A-TT--AGATCAA-CCC--TATCA-AC-AAGCTAT-CCTTTT-C-CCGGCAAAA---AAT-ATTC-TACTACAATAG-AAAAAATATAACA-A-GGCTG-TTTTGG-TATT-TTTATACC-AATGT-GAACC-TTGCAAC---ATG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGC--A-TG-TCC-AAG-------T--------A-TGT-AA------AAGA-AAG-AGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATTATTTTTGGAA--T---C-AAGAATT-TTTTATATT-TC-AGCACTATGCAATTGATCAAT--T--TGATT--ATAAATATATTTGC-CAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGG-ATTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAA--------AAATACTAAGTC--T-AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -AC-AAGCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTG-TTTTTGGTA-T-TTTA---CCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-AT-ATCTGTGCAAG-TTTCCC-AAG-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTTGGAA--T---C-AAGAA-T-TTTTATATT-TCAA-CACTATAC-ATTGATCA-T--TCATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTC--TAAC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACT-TTTT--------TAAAACGTCATAA--------TG-CAGTTTTC-GTGCACGTGCTCATATAATGAGTGTTTT-TAAAAAGTAT-ATCATTTACA-CCC-ATA--TGAATTTTAAGCTAT-GCATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT-------------TTTTTCCACAGAT-TC--TTGGATAATACTTG-GT---ACCAGTAGCA------GCAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAG-CTGAAGATCAACCCC--CACCATAC-AGGTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA-GG-TGTTTTTCT-TA-TGTTTG---CAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTAT-ATCAGTGCAAAGTT-CCC-CAG-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-TA-TTTAAGAAGCTTGAC-ATTAA-TATTCTAT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTG-AAAATTGTGAAG---AC-CTGCGCCATGG--AGGAAA-T-GTA-AGTGA-CAC-ACGG--TA-CCAGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGG---CA-CA-TTA-----TGTATG-TGTACACTACATGTGTATAAGATC------TATCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111111111 1111111111111111111
lowQualScore : 1 1 1 11 11 1 111 1 1 111 1 2 1 222222 2 1 2222222 1 11 1111111 11 1 1 1 6666666666666 33333 222 2 1 22222 11 1 2 222 2 2 11 1 222222222222222222222222 11111 22222 11 1 555555555 2 1 1 555555 11 44444444444444 5555555555 11111111 2222222 222 222222 11 2222 333333333333333 1 555555555555555555555555 1 444444444444 1 444444444444 1 333 77777777777777777 111 1 11 1 333333 1 1111 1 1 11 3333 999999999999999999999999999999999999999999 222 22 1 1 11 1 2222 0000000000000000000 11 1 1 44444444 55555555555555 1 222 1 1 1 11 1 11 5555555555555555 1 22 1 22 33333 11 1111 1 222 11 222222 2222222 22222 1 11 111 1 1 1 1 1 11 22222 111 22222 22222222 1 11 222222222222 11 11 222222222 1 11 1111 3333 3333333 1111111111 111 4444444444444444 111111 1111 3333333333333 11111 11111 111111 3333333 111 11 222222222222222 11 1111 2222 22222222 222 111 1
lowQualScore : 3 3 2 0 0 0 33 55 33 2 0 777 2 0 0 777 0 0 0 2 555555 3 0 0000000 0 33 4444444 33 0 2 0 2 2 2 7 3 3 1 7 6 3 6 5555555555555 33333 0 6 7 1 7 555 3 7 3 77777 7 44 3 3 7 111 3 6 7 88 7 3 6 888888888888888888888888 66666 22222 44 2 888888888 7 0 6 3 3 0 0 6 7 3 111111 88 22222222222222 8888888888 0 88888888 2222222 333 333333 0 88 1111 000000000000000 7 0 3 3 111111111111111111111111 0 222222222222 7 0 3 111111111111 0 111 44444444444444444 444 0 7 1 1 7 11 3 7 7 7 555555 7 3 4444 3 3 6 88 1111 6 777777777777777777777777777777777777777777 555 00 1 7 3 0 3 44 3 8888 0 2222222222222222222 1 3 44 7 3 7 3 88888888 77777777777777 7 7 3 7 333 3 3 3 99 3 11 6666666666666666 3 6 00 6 6 2 7 22 22222 88 6 5555 6 1 6 3 888 8 99 0 666666 1 6666666 0 8 1 1 8 0 5 22222 8 8 9 6 8 0 33 777 0 0 0 0 5 8 88 8 0 11 8 5 00000 8 88 8 444 22222 88 0 8 8 99999999 8 88 0 33 0 8 333333333333 11 8 11 77 6 22 000000000 1 6 3 2 2 00 1 0000 3 0000 6 0000000 6 6 1 8888888888 888 6 6 2 6 6 6 1111111111111111 6 6 999999 6 1 4444 6666666666666 3 66666 99 6 6 77777 7 6 6 111111 6 6 1 6 6 9 8 2222222 000 11 11 0 66 99 0 666666666666666 0 8 66 7777 8 8 5555 22222222 0 0 5 66 222 444 0 8 8 55
lowQualScore : . . . . . . .. .. .. . . ... . . . ... . . . . ...... . . ....... . .. ....... .. . . . . . . . . . . . . . . ............. ..... . . . . . ... . . . ..... . .. . . . ... . . . .. . . . ........................ ..... ..... .. . ......... . . . . . . . . . . ...... .. .............. .......... . ........ ....... ... ...... . .. .... ............... . . . . ........................ . ............ . . . ............ . ... ................. ... . . . . . .. . . . . ...... . . .... . . . .. .... . .......................................... ... .. . . . . . .. . .... . ................... . . .. . . . . ........ .............. . . . . ... . . . .. . .. ................ . . .. . . . . .. ..... .. . .... . . . . ... . .. . ...... . ....... . . . . . . . ..... . . . . . . .. ... . . . . . . .. . . .. . . ..... . .. . ... ..... .. . . . ........ . .. . .. . . ............ .. . .. .. . .. ......... . . . . . .. . .... . .... . ....... . . . .......... ... . . . . . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . . ...... . . . . . . . ....... ... .. .. . .. .. . ............... . . .. .... . . .... ........ . . . .. ... ... . . . ..
lowQualScore : 2 2 5 0 0 0 88 88 88 5 0 555 5 0 0 555 0 0 0 5 222222 7 0 5555555 0 88 0000000 22 0 5 0 5 5 5 0 2 2 0 3 7 3 7 7777777777777 33333 7 7 3 0 3 000 7 3 3 77777 3 77 3 7 3 000 3 7 3 33 3 3 7 333333333333333333333333 77777 77777 00 0 000000000 3 7 7 3 3 7 7 7 3 3 333333 33 00000000000000 3333333333 7 00000000 0000000 888 000000 6 66 2222 000000000000000 0 0 2 2 888888888888888888888888 0 222222222222 0 0 2 222222222222 0 222 88888888888888888 888 0 3 0 0 3 00 3 3 3 3 333333 3 3 3333 3 3 7 33 0000 7 000000000000000000000000000000000000000000 777 77 0 3 3 7 3 00 3 3333 7 3333333333333333333 0 7 77 3 3 3 3 33333333 00000000000000 3 3 3 3 333 3 3 3 33 3 00 0000000000000000 3 7 77 7 7 0 3 00 00000 33 7 7777 7 0 7 3 000 0 00 6 222222 0 0000000 8 0 0 4 0 8 6 66666 0 0 6 4 0 0 88 555 0 0 0 0 5 0 88 0 8 00 0 0 00000 0 88 0 000 88888 88 8 0 0 00000000 0 22 6 00 6 0 888888888888 00 0 00 55 7 77 777777777 0 7 3 5 5 33 7 8888 2 0000 7 0000000 7 7 7 5555555555 333 7 7 5 7 7 7 8888888888888888 7 7 222222 7 0 2222 7777777777777 5 77777 22 7 7 77777 3 7 7 888888 7 7 7 7 7 3 0 2222222 666 44 66 6 22 44 8 888888888888888 8 0 66 0000 0 0 0000 00000000 8 8 0 44 000 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGA-GATTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTAG-TTAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTTCAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT-GA---GA-ATGACCGAGATTCCAAA--AAAT-TTT--GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----T-GTGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCT-A-TTACCT--GTA-ATACTTCT-GGTGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--TACAA-GATCT--------GGATG-TGTAC-T---------GTA-TACA---GTGTCTAAT--G--TGN---------ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCA-GATCGACTTTTATATATTTTTGCCAT--CATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATC-ACATTTAGGGTCAATTTGTA-----------AATTTTACAACATA------TACATG-A-TTTGCAGGGTTTTG--TCTGAGATATCATGT-CTTATTACCTGCACANAGCACAACCACACATATTCA-ACGACT-GCAAAGATTTTAAAGAATGCAA-AG----TTTCAAT--TCA-AT-A---AAT---ATCAATTTCGGTTCAAAGATT-TTTATAA-ACT--------CAATAATAGAA--ATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCA-TAATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT--TT-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACA-------ATGG-TCGTGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---A-C-AATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGCAAA-TT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAAGATTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA----CC--GTGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACAACGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGTTGACAGTGTGGTATTAGGTTAATAGTACATG-ATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCACCCCTTCAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATCTCCCCACCCATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT-GAT--GAGATGACCGAGATTCCAAA--AAATTTTT--GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----T-GTGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCT-A-TTACCT--GTA-ATACTTCT-GGTGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--TACAA-GATCT--------GGATG-TGTAC-T---------GTA-TACA---GTGTCTAAT--G--TG----------ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCA-GATCGACTTTTATATATTTTTGCCAT-NCATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATC-ACATTTAGGGTCAATTTGTA-----------AATTTTACAACATA------TACATG-A-TTTGCAGGGTTTTG--TCTGAGATATCATGT-CTTATTACCTGCACANAGCACAACCACACATATTCA-ACGACT-GCAAAGATTTTAAAGAATGCAA-AG----TTTCAGTGGTCATATCAGCCAAT---ATCAATNTCGGTTCAAAGATT-TTTATAA-ACT--------CAATAATAGAATTATTTATNTTTATGTCATTTATTTTGTAACAAATGCTTCA-TAATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTGAAAGCT--CTNAGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGGTATTTAATTTATGAGCCCCTCT-CAACTTTTTTAT-G-CTTCTAAATACA-------ATGG-TNATGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---A-C-AATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGCAAA-TT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGA-GATTGCTTTGAATTCGCTTTAAAA-TTGTGAAG---AAACTGCGC-ATGG--GGAAAT-TA-TA-AGTGA-CAC-ACG-T-ACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTT--TG--C----------TGTAGGCC-----CCATT-CAA--CCAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--T--T--ATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTAG-TCAATAGTACATG-ATAAAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTTCAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT-GA----ATATGACCGAGATTCCAAA--AAATGTGT--GTTTGC-GTTGAAAAA----------CAAGGGGGGGGGGC---AACAATTATGTA-----C-GTGTA---TACATGTGTATAAGATCTA------TCTACA-GTGAC----ATATACGATAACCT-ACTTACCTTGGTA-CTACTTCT-GGTGCCTGTGATGATAAATAAATGTCATGT-------A-A-C-TAA-ATTTTGTTACAA-GATGT--------GG-TG-TGTAC-TACTGTACATGTA-TACA---GTGTCTAATTGG--TGG---------ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCA-GATCGACTTTTATATATTTTTGCCATGGCATGATCTATTACAAAACAATTCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAAAT---TATTTA--GTCAATTTG---------------TTTTAC-----A------TACATG-A-TTTGCAGGGTTTTG--TCTGAGATATCATGT-CTTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTTTTTTAAC--TCA-AT-----AATAGAATTATTTTATGTTC--ATATTATTTGTAACATTGTGTATTGCATCAGTAAAA-TATATA-----ATG----TTATTTTGC--------TTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTGCTTCAAAACAAA-ACCTATT-TTTGCAA-------T---TA-A-----A---ACTA-TACACTGGGGGGGGGGGGGGGAAAA--CTAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTG-AAGCT--TTGAGGTGTGTGAAGG--TGAGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAG--TTAAATTTATGAGTCCTAATGCA--TTTTTTAT-G-CTTCTAAATACA-------A-AG-TGATGTTT-GTGCAT--------------TTT-TAAAAGATAA-ATTGTTA-TA-TCTCTTC--TAAATGT---GC-AT-GC-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTG-----TTTTCTTACA-ATGTCA-TTTGATAATACTTG-GT---ACAGGCAGCA-T---TTTAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TA-TT--AGATCAA-CCT--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT--G-TAT-TTT---A-C-AATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-ATA-TCTGTGCAAA-TT-CCC-AAG-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATTA-TTTT-GGAA--T---CAAAGAAT-TTTT-ATATT-TCAAGAACTATACA-TTGATCA-------TGAGTAAATATATATATTTGT-CAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|10 : ttGGGGGC---A-CA-TTATGTA-----T-GTGTACACTACATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCT-A-TTACCT--GTACATAC-TCT-GGTGCCTGTGATAATAAATAAATGTCATGT-------A-ACC-TAA-A-TTT--TACAATGA--T--------GGATG-TGTACAT---------GTA-TACACATGTGTCTAAT--G--T-----------ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAG-CTTCTAAATGCA-------ATGG-TTGTGTAT-GTGCACAATATGATGGTG--TTT-TAAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGC-ATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACGA-GATTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-ACGGTTACCCAGAAAGGATAGTAGGAGTGAGAT-ACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGTGCTG--CA----CCCAGTGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTT--TTTATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATAAAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCAC--ACCACACACGC--CCCTTCAACCTAATGAA-AGTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAGATGACCGAGATTCCCAA--AATTTTTTTTGTTT-CTGTTAAAAAA----------AAAAGGGGGGGGGTCTTA-C--TTATGTACTGTAT-GTGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCT-C-CTA--T--ACA-ATACTTCT-GAGGCCTGTGA-AATAAATAAATGTTGTGT-------GTA-TGTAA----CC--TACAA-GAGCT--------GGATG-TG-AT-T---------GTA-TACAAT-GTGTCTTAA--G--TGT---------ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCA-GATCGACTT--A-ATATTTTTG---------G--CCATT-TAAAAGAATT-ATATTAACACATATCTAAAG-CATTTTCAT--AAATC-A---TTAGGGTCAATTTGTAGAACAATTTAAAATTTTACAATATA------T---------TTGTAGGTTTTTG-------GATATCTTA--ATTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACT-GCAA-GATTTTAAAGAATGCAA-AG----TTTCAAT---------AGCCAAT---ATCAATGTTGGT-CAAAGATT-TTAA-AA-ACT--------CAATAATAGAA--ATT-ATCTTT-TTTCATTTATTTTGTAACAAATGCTTCA-TAATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAA--ATATCCAATT-TTAATAATGTT--AAGCTGCCTCAGGTTGGTGAAGG--GGA-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCG--ATTTAATTTATGAGCCCCTCT-CATTTTTTTTAT-G-CATCTAAATACA-------ATGG-TTATGTTT-GTGCATAATATGATGATA--TTTATATAAGATAT-AT-GTTAGCA-TCT-TTC--TAAATGT---GC-AT-GT-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTC-----TTTGTTTACAGAT-TCA-TTTGATAATACTTG-GT---A-CAGCAACA-T---TTTTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AG-TT--AGACCCA--CC--TATC--AC-AGGCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT---------TAT-T-------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------TAAG-TT-CCC-AAGTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATTA-TTTT-GGAA--T---C-AAGCAT-TT----TATT-TCAA-CACAATGCA-TTGATCAATAATA-TGAA-AAATAT-CCTA--TGC-CAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAA-CTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-GA-AACAGTGAACACCACGGT-ACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGTGCTGTGCATTAGCC--CTATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT--TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTAG--TAATAATACATGTATAA-GTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCACCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT-GA---GA---GACCGAGATTCCAAAACAAA---TT--G------GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGG---G-TA-ATATGTA-----TGGTGTA---TACATGTGAATAAGATTTA------TCTAC--GTGAC----GTATACGATAACCTAA-TT-------TC-ATAACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAA-A-C-TAAGATTTTTGTACAA-G-TCTCAGAGAGCGGGTGATGTAG-T---------ATACCACA---ATGTGCATT--GATTGAGTATGGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATA--TTTGCCATCTCATGATCTATT-TAAAACAATCTCCATTAA-GCATATCTAAAATCATTTTCAT--AAATCAACATTTAGGGTCAACTAGTACTT--------AACTTTACAACATACATATGTACATGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACT-GCAAAGATTTTAAAGAATGCAA-AG----TTTCAGTGGTCATATCA-----------CAATTTCGG-TCAAAGATT-TTTATAA-ACT--------CAATAATAGA---ATTTATCACTATGTCATTTATTTTGTAACAAATGCTTCA-TAATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTG-TTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAGA-----ACGGAATACTACACT---GGGAGGGGTTCGAAGATCCTAAAATGACAACAAAAAGAATAT-CATTTCTTAATAA-GTTGAAAGCT--T---AGTTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCAT-CCTGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA-----TTTG---------AAATACAAACAATTATGGTTAATGTTTAGTGCATAGTATGATATAT--TTT-TAAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTT-TTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTC-ATG-ATCA-ACTCCAAGT----AATTT--AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAA-----ACACCA-A-GGCTGTTTT--GATAT-TTT---ACC-AATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-ATA-T-TGTGC-AA-TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACA-TA-TTTT-GGAA--T---C-AAGAA--TTTT-ATATTATCAAACAGTATGCA-TTGATCAAT--T--TG-ATGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTC-----TTTTCTTACAGAT-TCA-TTT-ATAATACTTGCGT---ACAGCAAGCAAT---TTTAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AAT---------------------A-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCC-TTTT-C-CCGGCAAAAAA---T-ATTC-TACTACAATAGAAAAAA-TATAACA-A-GGCTGTTTT--GGTAT-TTTTATA-CCAATGT-GAACC-TTGCAAC--A-TG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGCA---TG-TCC-AAG-------T--------A-TGT-AA------AAGA-AAGAGG-ACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATTA-TTTTTGGAA--T---C-AAGAAT-TTTTTATATT-TCA-GCACTATGCAATTGATCAAT--T--TGATTA--TAAATATATTTGC-CAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGGA-TTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAAA--------AATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -AC-AAGCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTGTTTTTGG-TAT-TTT---A-CCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-ATA-TCTGTGCAAG-TTTCCC-AAG-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAA-CACTATACA-TTGATCA-T--TCATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACTTTTTTAA-AACGTCATAATGCA-------GTTT-TCGTGCAC-GTGC-TCATATAATGAGTGTTTT-TAAAAAGTAT-ATCATTTACA-CCC-ATA--TGAATTTTAAGCTAT-GCATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT-------------TTTTTCCACAGAT-TC--TTGGATAATACTTG-GT---ACCAGTAGCA------GCAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAG-CTGAAGATCAACCCC--CACCATAC-AGGTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA-GG-TGTTTTTCT-TATGTTT---G-CAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTATA-TCAGTGCAAAGTT-CCC-CAG-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-TA-TTTA-AGAAGCTTGAC-ATTAATATTCT-AT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAAG---AC-CTGCGCCATGG--AGGAAA-TG-TA-AGTGA-CAC-ACGGT-ACC-AGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGGC---A-CA-TTATGTA-----T-GTGTACACTACATGTGTATAAGATCTA------TCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 1 1 11 11 1 111 1 1 111 1 2 1 222222 1 1 2222222 1 11 1111111 11 1 1 1 66666666666666 33333 222 1 1 22222 11 1 1 444 1 1 1 11 1 222222222222222222222222 11111 22222 22 1 1 555555555 1 1 333333 2 444444444444 5555555555 11111111 22222 222 222222 11 2222 3333333333333 1 444444444444444444444444444444444444444444444 1 444444444444 1 333 55555555555555555 111 1 11 1 333333333 1 1111 1 1 11 444 999999999999999 555555555555555555 1 222 111 1 1 11 1 2222 66666666666666 11 2 1 44444444 1 22 1 222 1 111 11 1 66666666666666666666666 1 1 1 1 444444 11 1111 1 3333 11 2222 22222222 111 22222 1 11 111 1 111 1 1 11 1111 111 1111111 22222222 11 111111111111111 11 222222222 1 11 1111 3333 333333 1111111111 111 11 4444444444444444 111111 1111 3333333333333 11111 11111 111111 3333333 111 11 222222222222222 11 1111 2222 22222222 222 111 1
lowQualScore : 3 3 2 0 0 0 33 55 33 2 0 777 2 0 0 777 0 0 0 2 555555 3 0 0000000 0 33 4444444 33 0 2 0 2 2 2 7 3 3 1 7 6 3 6 99999999999999 33333 0 6 7 1 7 555 3 7 3 77777 7 44 3 3 7 333 3 2 2 7 88 7 3 6 888888888888888888888888 66666 22222 00 3 2 888888888 7 6 3 3 0 0 6 7 888888 3 7 888888888888 8888888888 0 88888888 00000 8 333 333333 0 88 1111 3333333333333 7 0 3 3 888888888888888888888888888888888888888888888 7 0 3 111111111111 0 111 55555555555555555 444 0 7 1 1 7 11 3 7 7 7 888888888 7 3 4444 3 3 6 88 333 6 666666666666666 222222222222222222 3 555 999 1 7 3 0 3 44 3 8888 77777777777777 88 3 3 7 3 7 88888888 3 6 7 7 55 6 7 3 7 333 3 666 99 3 11111111111111111111111 3 6 7 3 6 6 2 7 6 3 000000 88 6 5555 6 1 6 3 3333 8 99 0 3333 3 1 66666666 222 1 8 0 5 22222 8 8 9 6 8 0 33 777 0 444 0 5 8 88 8 0 11 8 7777 8 0 8 8 444 4444444 88 0 8 8 99999999 8 88 11 33 0 8 999999999999999 8 11 77 6 22 000000000 1 6 3 2 2 00 1 0000 3 0000 6 000000 6 6 1 8888888888 888 6 6 2 44 6 6 1111111111111111 6 6 999999 6 1 4444 6666666666666 3 66666 99 6 6 77777 6 6 111111 6 6 1 6 6 9 8 2222222 000 11 11 0 66 99 0 666666666666666 0 8 66 7777 8 8 5555 22222222 0 0 5 66 222 444 0 8 8 55
lowQualScore : . . . . . . .. .. .. . . ... . . . ... . . . . ...... . . ....... . .. ....... .. . . . . . . . . . . . . . . .............. ..... . . . . . ... . . . ..... . .. . . . ... . . . . .. . . . ........................ ..... ..... .. . . ......... . . . . . . . . ...... . . ............ .......... . ........ ..... . ... ...... . .. .... ............. . . . . ............................................. . . . ............ . ... ................. ... . . . . . .. . . . . ......... . . .... . . . .. ... . ............... .................. . ... ... . . . . . .. . .... .............. .. . . . . . ........ . . . . .. . . . . ... . ... .. . ....................... . . . . . . . . . . ...... .. . .... . . . . .... . .. . .... . . ........ ... . . . . ..... . . . . . . .. ... . ... . . . .. . . .. . .... . . . . ... ....... .. . . . ........ . .. .. .. . . ............... . .. .. . .. ......... . . . . . .. . .... . .... . ...... . . . .......... ... . . . .. . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . ...... . . . . . . . ....... ... .. .. . .. .. . ............... . . .. .... . . .... ........ . . . .. ... ... . . . ..
lowQualScore : 2 2 5 0 0 0 88 88 88 5 0 555 5 0 0 555 0 0 0 5 222222 3 0 5555555 0 88 0000000 22 0 5 0 5 5 5 0 2 2 0 3 7 3 7 00000000000000 33333 7 7 3 0 3 000 3 3 3 77777 3 77 3 3 3 333 3 3 0 3 33 3 3 7 333333333333333333333333 77777 77777 77 3 0 000000000 3 7 3 3 7 7 7 3 333333 7 7 000000000000 3333333333 7 00000000 00000 0 888 000000 6 66 2222 0000000000000 0 0 2 2 000000000000000000000000000000000000000000000 0 0 2 222222222222 0 222 55555555555555555 888 0 3 0 0 3 00 3 3 3 3 000000000 3 3 3333 3 3 7 33 777 7 000000000000000 777777777777777777 3 777 000 0 3 3 7 3 00 3 3333 00000000000000 33 7 7 3 3 3 33333333 3 7 3 3 33 7 3 3 3 333 3 777 33 3 33333333333333333333333 3 7 3 3 7 7 0 3 7 3 000000 33 7 7777 7 0 7 3 3333 0 00 6 0000 8 0 88888888 222 4 0 8 6 66666 0 0 6 4 0 0 88 555 0 000 0 5 0 88 0 8 00 0 0000 0 8 0 0 000 4444444 88 8 0 0 00000000 0 22 66 00 6 0 888888888888888 0 00 55 7 77 777777777 0 7 3 5 5 33 7 8888 2 0000 7 000000 7 7 7 5555555555 333 7 7 5 88 7 7 8888888888888888 7 7 222222 7 0 2222 7777777777777 5 77777 22 7 7 77777 7 7 888888 7 7 7 7 7 3 0 2222222 666 44 66 6 22 44 8 888888888888888 8 0 66 0000 0 0 0000 00000000 8 8 0 44 000 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAGA-TGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA-----------AACTTTACAACATA------TACATG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG----TTTCAAT--TCAGC-A---ATATCA--ATTTCGGT-CAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-G-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGATC-TAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTGAA-GCT---TC-AGGTTGGTGAAGGTG--AGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACAA-------TGGTTA-TGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTCTAAA--TGT---GC-ATG-C-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTCTTTTTTT----ACAGAT-TCATTT-GATAATACTTG-GT---ACCGGCAGCA-TTT---TAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AATT--AGATCAA-CCC--TATCA-ACAA-GCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGCAAG-TT-CCCAA-G-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTTAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAGAATGACCGAGATTCCAAAAAATTT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGN---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA-CATTTAGGGTCAATTTGTA-----------AATTTTACAACATA------TACATG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG----TTTCAAT--TCAATAA---ATATCA--ATTTCGGTTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-G-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGATC-TAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTGAA-GCT---TT-AGGTTGGTGAAGGTG--AGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACAA-------TGGTCG-TGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTCTAAA--TGT---GC-ATG-C-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTCTTTTTTT----ACAGAT-TCATTT-GATAATACTTG-GT---ACCGGCAGCA-TTT---TAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AATT--AGATCAA-CCC--TATCA-ACAA-GCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---AC-AATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGCAAA-TT-CCCAA-G-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGAGA-TTGCTTTGAATTCGCTTTAAAA-TTGTGAAG---AAACTGCGC-ATGG--GGAAAT-TA-TA-AGTGA-CAC-ACG-T-ACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTT--TG--C-----------TGTAGGCC-----CCATT-CAA--CCAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--T--T--ATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATAAAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTT-CAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT------GAATATGACCGAGATTCCAAAAAATGTGT---GTTTGC-GTTGAAAAA----------CAAGGGGGGGGGGC---AACAATTATGTA-----CG-TGTA---TACATGTGTATAAGATCTA------TCTACA-GTGAC----ATATACGATAACCTACTTACCTTGGTA-CTACTTCTGG-TGCCTGTGATGATAAATAAATGTCATGT-------A-A-C-TAA-ATTTTGTT--ACAA-GATGT--------GG-TG-TGTAC-TACTGTACATGTAT-ACA---GTGTCTAATTGG--------TGG---ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCATGGC--ATGATCTATTACAAAACAATTCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAAATTA---TTTAG--TCAATTTGT---------------TTTACA-----------TACATG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTTTTTTAAC--TCAATAATAGA-ATTA--TTTTATGTTCA--TATTATTTGTAACATTGTGTATTGCATCAGTA-AAATATATA---ATGT----TATTTTGC--------TTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-GCTTCAAAACAAA-ACCTATT-TTTGCAAT----------TA-A-----A---ACTA-TACACTGGGGGGGGGGGGGGGAAAA-C-TAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTGAA-GCT---TTGAGGTGTGTGAAGGTG--AGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAG--TTAAATTTATGAGTCCTAATGCA--TTTTTTAT-G-CTTCTAAATACAA--------AGTGA-TGTTT-GTGCAT--------------TTT-TAAAAGATAA-ATTGTTA-TA-TCTCTTCTAAA--TGT---GC-ATG-C-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTGTTTTCTT----ACA-ATGTCATTT-GATAATACTTG-GT---ACAGGCAGCA-TTT---TAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TATT--AGATCAA-CCT--TATCA-ACAA-GCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT--G-TAT-TTT---AC-AATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-ATA-TCTGTGCAAA-TT-CCCAA-G-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATTA-TTTT-GGAA--T---CAAAGAAT-TTTT-ATATT-TCAAGAACTATACA-TTGATCA-------TGAGTAAATATATATATTTGT-CAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|10 : ttGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCTA-TTACCT--GTACATAC-TCTGG-TGCCTGTGATAATAAATAAATGTCATGT-------A-ACC-TAA-A-TTT--T--ACAATGA--T--------GGATG-TGTACAT---------GTAT-ACACATGTGTCTAAT--G--------T-----ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAG-CTTCTAAATGCAA-------TGGTTG-TGTAT-GTGCACAATATGATGGTG--TTT-TAAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGC-ATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACGAGA-TTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-ACGGTTACCCAGAAAGGATAGTAGGAGTGAGAT-ACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGTGCTG--CA-----CCCAGTGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTT--TTTATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATAAAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCAC--ACCACACACGC--CCCTT-CAACCTAATGAA-AGTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAGA-TGACCGAGATTCCCAAAATTTT-TTTTGTTT-CTGTTAAAAAA----------AAAAGGGGGGGGGTCTTA-C--TTATGTACTGTATG-TGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCTC-CTA--T--ACA-ATACTTCTGA-GGCCTGTGA-AATAAATAAATGTTGTGT-------GTA-TGTAA----CC--T--ACAA-GAGCT--------GGATG-TG-AT-T---------GTAT-ACAAT-GTGTCTTAA--G--------TGT---ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCAG-ATCGACTT--A-ATATTTTTG-----------G--CCATT-TAAAAGAATT-ATATTAACACATATCTAAAG-CATTTTCAT--AAATCA----TTAGGGTCAATTTGTAGAACAATTTAAAATTTTACAATATA------T--------TT-GTAGGTTTTTG-------GATATCTTA-A-TTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACTG-CAA-GATTTTAAAGAATGCAA-AG----TTTCAAT----AGCCA---ATATCA--ATGTTGGT-CAAAGATT-TTAA-AA--------ACT-CAATAATAGAAATT-ATC-TTTTTTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-G-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGATC-TAAAATGACAACAAAAA--ATATCCAATT-TTAATAATGTT-AA-GCTGCCTC-AGGTTGGTGAAGGGG--A-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCG--ATTTAATTTATGAGCCCCTCT-CATTTTTTTTAT-G-CATCTAAATACAA-------TGGTTA-TGTTT-GTGCATAATATGATGATA--TTTATATAAGATAT-AT-GTTAGCA-TCT-TTCTAAA--TGT---GC-ATG-T-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTCTTTGTTT----ACAGAT-TCATTT-GATAATACTTG-GT---A-CAGCAACA-TTT---TTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AGTT--AGACCCA--CC--TATC--ACAG-GCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT---------TAT-T------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------TAAG-TT-CCCAA-GTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATTA-TTTT-GGAA--T---C-AAGCAT-TT----TATT-TCAA-CACAATGCA-TTGATCAATAATA-TGAA-AAATAT-CCTA--TGC-CAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAA-CTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-GA-AACAGTGAACACCACGGT-ACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGTGCTGTGCATTAGCCC---TATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT--TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTA-GT-AATAATACATGTATAA-GTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCA-CCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT------GAGA--GACCGAGATTCCAAAACAAAT-T---G------GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGG---G-TA-ATATGTA-----TGGTGTA---TACATGTGAATAAGATTTA------TCTAC--GTGAC----GTATACGATAACCTAATT-------TC-ATAACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAA-A-C-TAAGATTTT--TGTACAA-G-TCTCAGAGAGCGGGTGATGTAG-T---------ATACCACA---ATGTGCATT--GATTGAGTATGGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT--GCCAT--CTCATGATCTATT-TAAAACAATCTCCATTAA-GCATATCTAAAATCATTTTCAT--AAATCAACATTTAGGGTCAACTAGTACTT--------AACTTTACAACATACATATGTACATGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACTG-CAAAGATTTTAAAGAATGCAA-AG----TTTCAGTGGTCA--------TATCACAATTTCGGT-CAAAGATT-TTTATAA--------ACT-CAATAATAGAA-TTTATCACTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTG-TTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAGA-----ACGGAATACTACACTGGGAGGGGT---TCGAAGATCCTAAAATGACAACAAAAAGAATATC-ATTTCTTAATAA-GTTGAAAGCT---T---AGTTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCATCC-TGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA-----TTTG---------AAATACAAACAATTATGGTTAATGTTTAGTGCATAGTATGATATAT--TTT-TAAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTTTTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTCA-TG-ATCA-ACTCCAAGT----AATTT-AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAAA-----CACCA-A-GGCTGTTTT--GATAT-TTT---ACCAATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-ATA-T-TGTGCAA--TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACAT-A-TTTT-GGAA--T---C-AAGAA--TTTT-ATATTATCAAACAGTATGCA-TTGATCAAT--T--TG-ATGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTCTTTTCTT----ACAGAT-TCATTT--ATAATACTTGCGT---ACAGCAAGCAATTT---TAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AAT---------------------ATT--AGATCAA-CCC--TATCA-ACAA-GCTATCC-TTTT-C-CCGGCAAAAAA---T-ATTC-TACTACAATAGAAAAAA-TATAACA-A-GGCTGTTTT--GGTAT-TTTTATACCAATGT-GAACC-TTGCAAC--A-TG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGCA---TG-TCCAA-G-------T--------A-TGT-AA------AAGA-AAGAGG-ACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATTA-TTTTTGGAA--T---C-AAGAAT-TTTTTATATT-TCA-GCACTATGCAATTGATCAAT--T--TGATTA--TAAATATATTTGC-CAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGGA-TTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAAA--------AATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -ACAA-GCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTGTTTTTGG-TAT-TTT---ACCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-ATA-TCTGTGCAAG-TTTCCCAA-G-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAA-CACTATACA-TTGATCA-T--TCATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACTTTTTTAA-AACGTCATAATGCAG-------TTTTCG-TGCAC-GTGC-TCATATAATGAGTGTTTT-TAAAAAGTAT-ATCATTTACA-CCC-ATATGAA--TTTTAAGCTATG-CATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT--------TTTTTCC----ACAGAT-TC-TTG-GATAATACTTG-GT---ACCAGTAGCA---G---CAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAGCTGAAGATCAACCCC--CACCATACAG-GTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA-GG-TGTTTTTCT-TATGTTT---GCAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTATA-TCAGTGCAAAGTT-CCCCA-G-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-TA-TTTA-AGAAGCTTGAC-ATTAATATTCT-AT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAAG---AC-CTGCGCCATGG--AGGAAA-TG-TA-AGTGA-CAC-ACGGT-ACC-AGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 1 1 11 11 1 111 1 1 111 1 2 1 222222 1 1 2222222 1 11 1111111 11 1 1 1 66666666666666 33333 222 1 1 22222 11 1 1 444 1 1 1 11 1 222222222222222222222222 11111 22222 22 1 1 555555555 1 1 333333 1 444444444444 5555555555 11111111 22222 222 222222 11 2222 3333333333333 1 444444444444444444444444444444444444444444444 1 444444444444 1 333 55555555555555555 111 1 11 1 333333333 1 1111 1 1 11 222 88888888888888888888888888 1 2 1 222 111 1 1 11 1 2222 333333 222 11 11 1 44444444 1 22 1 222 1 111 11 1 66666666666666666666666 1 1 1 1 333333 11 1111 1 3333 11 2222 22222222 22222 1 11 111 1 111 1 1 11 1111 111 1111111 22222222 11 111111111111111 11 222222222 1 11 1111 3333 111 1111111111 111 4444444444444444 111111 1111 3333333333333 11111 11111 111111 3333333 111 11 222222222222222 11 1111 2222 22222222 222 111 1
lowQualScore : 3 3 2 0 0 0 33 55 33 2 0 777 2 0 0 777 0 0 0 2 555555 3 0 0000000 0 33 4444444 33 0 2 0 2 2 2 7 3 3 1 7 6 3 6 99999999999999 33333 0 6 7 1 7 555 3 7 3 77777 7 44 3 3 7 333 3 2 2 7 88 7 3 6 888888888888888888888888 66666 22222 00 3 2 888888888 7 6 3 3 0 0 6 7 888888 3 7 1 888888888888 8888888888 0 88888888 00000 8 333 333333 0 88 1111 3333333333333 7 0 3 3 888888888888888888888888888888888888888888888 7 0 3 111111111111 0 111 33333333333333333 444 0 7 1 1 7 11 3 7 7 7 888888888 7 3 4444 3 3 6 88 333 7 6 33333333333333333333333333 3 6 3 555 999 1 7 3 0 3 44 3 8888 555555 333 88 44 7 3 7 88888888 3 6 7 7 55 6 7 3 7 333 3 666 99 3 11111111111111111111111 3 6 6 3 6 6 2 7 6 3 999999 88 6 5555 6 1 6 3 3333 8 99 0 3333 3 1 66666666 8 1 8 0 5 22222 8 8 9 6 8 0 33 777 0 444 0 5 8 88 8 0 11 8 7777 8 0 8 8 444 4444444 88 0 8 8 99999999 8 88 11 33 0 8 999999999999999 8 11 77 6 22 000000000 1 6 3 2 2 00 1 0000 3 0000 6 111 2 6 6 1 8888888888 888 6 6 2 6 1 6 6 1111111111111111 6 6 999999 6 1 4444 6666666666666 3 66666 99 6 6 77777 6 6 111111 6 6 1 6 6 9 8 2222222 000 11 11 0 66 99 0 666666666666666 0 8 66 7777 8 8 5555 22222222 0 0 5 66 222 444 0 8 8 55
lowQualScore : . . . . . . .. .. .. . . ... . . . ... . . . . ...... . . ....... . .. ....... .. . . . . . . . . . . . . . . .............. ..... . . . . . ... . . . ..... . .. . . . ... . . . . .. . . . ........................ ..... ..... .. . . ......... . . . . . . . . ...... . . . ............ .......... . ........ ..... . ... ...... . .. .... ............. . . . . ............................................. . . . ............ . ... ................. ... . . . . . .. . . . . ......... . . .... . . . .. ... . . .......................... . . . ... ... . . . . . .. . .... ...... ... .. .. . . . ........ . . . . .. . . . . ... . ... .. . ....................... . . . . . . . . . . ...... .. . .... . . . . .... . .. . .... . . ........ . . . . . ..... . . . . . . .. ... . ... . . . .. . . .. . .... . . . . ... ....... .. . . . ........ . .. .. .. . . ............... . .. .. . .. ......... . . . . . .. . .... . .... . ... . . . . .......... ... . . . . . . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . ...... . . . . . . . ....... ... .. .. . .. .. . ............... . . .. .... . . .... ........ . . . .. ... ... . . . ..
lowQualScore : 2 2 5 0 0 0 88 88 88 5 0 555 5 0 0 555 0 0 0 5 222222 3 0 5555555 0 88 0000000 22 0 5 0 5 5 5 0 2 2 0 3 7 3 7 00000000000000 33333 7 7 3 0 3 000 3 3 3 77777 3 77 3 3 3 333 3 0 0 3 33 3 3 7 333333333333333333333333 77777 77777 77 3 0 000000000 3 7 3 3 7 7 7 3 333333 3 3 0 000000000000 3333333333 7 00000000 00000 0 888 000000 6 66 2222 0000000000000 0 0 2 2 000000000000000000000000000000000000000000000 0 0 2 222222222222 0 222 55555555555555555 888 0 3 0 0 3 00 3 3 3 3 000000000 3 3 3333 3 3 7 33 333 3 7 33333333333333333333333333 3 7 3 777 000 0 3 3 7 3 00 3 3333 777777 333 33 00 3 3 3 33333333 3 7 3 3 33 7 3 3 3 333 3 777 33 3 33333333333333333333333 3 7 7 3 7 7 0 3 7 3 777777 33 7 7777 7 0 7 3 3333 0 00 6 0000 8 0 88888888 0 4 0 8 6 66666 0 0 6 4 0 0 88 555 0 000 0 5 0 88 0 8 00 0 0000 0 8 0 0 000 4444444 88 8 0 0 00000000 0 22 66 00 6 0 888888888888888 0 00 55 7 77 777777777 0 7 3 5 5 33 7 8888 2 0000 7 777 5 7 7 7 5555555555 333 7 7 5 7 0 7 7 8888888888888888 7 7 222222 7 0 2222 7777777777777 5 77777 22 7 7 77777 7 7 888888 7 7 7 7 7 3 0 2222222 666 44 66 6 22 44 8 888888888888888 8 0 66 0000 0 0 0000 00000000 8 8 0 44 000 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-T-------TACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG----TTTCAAT--AGT-AATA---TCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-G-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGATC-TAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTGAA-GCT---TC-AGGTTGGTGAAGGTG--AGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACAA-------TGGTTA-TGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTCTAAA--TGT---GC-ATG-C-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTCTTTTTTT----ACAGAT-TCATTT-GATAATACTTG-GT---ACCGGCAGCA-TTT---TAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AATT--AGATCAA-CCC--TATCA-ACAA-GCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCCAA-G-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAACATA------TACA-TG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG----TTTCAATTCAGC-AATA---TCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-G-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGATC-TAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTGAA-GCT---TC-AGGTTGGTGAAGGTG--AGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACAA-------TGGTTA-TGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTCTAAA--TGT---GC-ATG-C-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTCTTTTTTT----ACAGAT-TCATTT-GATAATACTTG-GT---ACCGGCAGCA-TTT---TAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AATT--AGATCAA-CCC--TATCA-ACAA-GCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCCAA-G-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGAGA-TTGCTTTGAATTCGCTTTAAAA-TTGTGAAG---AAACTGCGC-ATGG--GGAAAT-TA-TA-AGTGA-CAC-ACG-T-ACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTT--TG--C-----------TGTAGGCC-----CCATT-CAA--CCAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--T--T--ATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATAAAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTT-CAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT------GAATATGACCGAGATTCCAAAAAATGTGT---GTTTGC-GTTGAAAAA----------CAAGGGGGGGGGGC---AACAATTATGTA-----CG-TGTA---TACATGTGTATAAGATCTA------TCTACA-GTGAC----ATATACGATAACCTACTTACCTTGGTA-CTACTTCTGG-TGCCTGTGATGATAAATAAATGTCATGT-------A-A-C-TAA-ATTTTGTT--ACAA-GATGT--------GG-TG-TGTAC-TACTGTACATGTAT-ACA---GTGTCTAATTGG--------TGG---ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCATGGC--ATGATCTATTACAAAACAATTCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAAATTA---TTTAG--TCAATTTGT---------TTTACA-----------TACA-TG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTTTTTTAACTCAAT-AATAGAATTA--TTTTATGTTCA--TATTATTTGTAACATTGTGTATTGCATCAGTA-AAATATATA---ATGT----TATTTTGC--------TTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-GCTTCAAAACAAA-ACCTATT-TTTGCAAT----------TA-A-----A---ACTA-TACACTGGGG-GGGGGGGGGGGAAAAC-TAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTGAA-GCT---TTGAGGTGTGTGAAGGTG--AGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAG--TTAAATTTATGAGTCCTAATGCA--TTTTTTAT-G-CTTCTAAATACAA--------AGTGA-TGTTT-GTGCAT--------------TTT-TAAAAGATAA-ATTGTTA-TA-TCTCTTCTAAA--TGT---GC-ATG-C-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTGTTTTCTT----ACA-ATGTCATTT-GATAATACTTG-GT---ACAGGCAGCA-TTT---TAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TATT--AGATCAA-CCT--TATCA-ACAA-GCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT--G-TAT-TTT---A-CAATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-ATA-TCTGTGC-AAATT-CCCAA-G-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATTA-TTTT-GGAA--T---CAAAGAAT-TTTT-ATATT-TCAAGAACTATACA-TTGATCA-------TGAGTAAATATATATATTTGT-CAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|10 : ttGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCTA-TTACCT--GTACATAC-TCTGG-TGCCTGTGATAATAAATAAATGTCATGT-------A-ACC-TAA-A-TTT--T--ACAATGA--T--------GGATG-TGTACAT---------GTAT-ACACATGTGTCTAAT--G--------T-----ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAG-CTTCTAAATGCAA-------TGGTTG-TGTAT-GTGCACAATATGATGGTG--TTT-TAAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGC-ATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACGAGA-TTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-ACGGTTACCCAGAAAGGATAGTAGGAGTGAGAT-ACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGTGCTG--CA-----CCCAGTGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTT--TTTATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATAAAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCAC--ACCACACACGC--CCCTT-CAACCTAATGAA-AGTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAG-ATGACCGAGATTCCCAAAATTTT-TTTTGTTT-CTGTTAAAAAA----------AAAAGGGGGGGGGTCTTA-C--TTATGTACTGTATG-TGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCTC-CTA--T--ACA-ATACTTCTGA-GGCCTGTGA-AATAAATAAATGTTGTGT-------GTA-TGTAA----CC--T--ACAA-GAGCT--------GGATG-TG-AT-T---------GTAT-ACAAT-GTGTCTTAA--G--------TGT---ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCAG-ATCGACTT--A-ATATTTTTG-----------G--CCATT-TAAAAGAATT-ATATTAACACATATCTAAAG-CATTTTCAT--AAATCA---TT-AGGGTCAATTTGTAG--AACAATTTAAAATTT-------TACAATATATTT-GTAGGTTTTTG-------GATATCTTA-A-TTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACTG-CAA-GATTTTAAAGAATGCAA-AG----TTTCAAT--AGCCAATA---TCA--ATGT-TGGTCAAAGATT-TTAA-AA--------ACT-CAATAATAGAAATT-ATC-TTTTTTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GATT-G-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGATC-TAAAATGACAACAAAAA--ATATCCAATT-TTAATAATGTT-AA-GCTGCCTC-AGGTTGGTGAAGGGG--A-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCG--ATTTAATTTATGAGCCCCTCT-CATTTTTTTTAT-G-CATCTAAATACAA-------TGGTTA-TGTTT-GTGCATAATATGATGATA--TTTATATAAGATAT-AT-GTTAGCA-TCT-TTCTAAA--TGT---GC-ATG-T-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTCTTTGTTT----ACAGAT-TCATTT-GATAATACTTG-GT---A-CAGCAACA-TTT---TTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AGTT--AGACCCA--CC--TATC--ACAG-GCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT---------TAT-T------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------T-AAGTT-CCCAA-GTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATTA-TTTT-GGAA--T---C-AAGCAT-TT----TATT-TCAA-CACAATGCA-TTGATCAATAATA-TGAA-AAATAT-CCTA--TGC-CAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAA-CTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-GA-AACAGTGAACACCACGGT-ACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGTGCTGTGCATTAGCCC---TATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT--TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTA-GT-AATAATACATGTATAA-GTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCA-CCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT------GAG-A-GACCGAGATTCCAAAACAAAT-T---G------GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGG---G-TA-ATATGTA-----TGGTGTA---TACATGTGAATAAGATTTA------TCTAC--GTGAC----GTATACGATAACCTAATT-------TC-ATAACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAA-A-C-TAAGATTTT--TGTACAA-G-TCTCAGAGAGCGGGTGATGTAG-T---------ATACCACA---ATGTGCATT--GATTGAGTATGGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT--GCCAT--CTCATGATCTATT-TAAAACAATCTCCATTAA-GCATATCTAAAATCATTTTCAT--AAATCAACATTTAGGGTCAACTAGTACTTAAC--TTTACAACATACATATGTACA-TGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACTG-CAAAGATTTTAAAGAATGCAA-AG----TTTCAGT--GGT-CATA---TCACAATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAA-TTTATCACTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTG-TTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAGA-----ACGGAATACTACACTGGGAGGGGT---TCGAAGATCCTAAAATGACAACAAAAAGAATATC-ATTTCTTAATAA-GTTGAAAGCT---T---AGTTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCATCC-TGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA-----TTTG---------AAATACAAACAATTATGGTTAATGTTTAGTGCATAGTATGATATAT--TTT-TAAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTTTTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTCA-TG-ATCA-ACTCCAAGT----AATTT-AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAAA-----CACCA-A-GGCTGTTTT--GATAT-TTT---ACCAATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-ATA-T-TGTGC-AA-TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACAT-A-TTTT-GGAA--T---C-AAGAA--TTTT-ATATTATCAAACAGTATGCA-TTGATCAAT--T--TG-ATGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTCTTTTCTT----ACAGAT-TCATTT--ATAATACTTGCGT---ACAGCAAGCAATTT---TAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AAT---------------------ATT--AGATCAA-CCC--TATCA-ACAA-GCTATCC-TTTT-C-CCGGCAAAAAA---T-ATTC-TACTACAATAGAAAAAA-TATAACA-A-GGCTGTTTT--GGTAT-TTTTATACCAATGT-GAACC-TTGCAAC--A-TG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGC-ATGT---CCAA-G-------T--------A-TGT-AA------AAGA-AAGAGG-ACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATTA-TTTTTGGAA--T---C-AAGAAT-TTTTTATATT-TCA-GCACTATGCAATTGATCAAT--T--TGATTA--TAAATATATTTGC-CAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGGA-TTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAAA--------AATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -ACAA-GCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTGTTTTTGG-TAT-TTT---ACCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-ATA-TCTGTGC-AAGTTTCCCAA-G-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAA-CACTATACA-TTGATCA-T--TCATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACTTTTTTAA-AACGTCATAATGCAG-------TTTTCG-TGCAC-GTGC-TCATATAATGAGTGTTTT-TAAAAAGTAT-ATCATTTACA-CCC-ATATGAA--TTTTAAGCTATG-CATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT--------TTTTTCC----ACAGAT-TC-TTG-GATAATACTTG-GT---ACCAGTAGCA---G---CAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAGCTGAAGATCAACCCC--CACCATACAG-GTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA-GG-TGTTTTTCT-TATGTTT---GCAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTATA-TCAGTGCAAAGTT-CCCCA-G-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-TA-TTTA-AGAAGCTTGAC-ATTAATATTCT-AT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAAG---AC-CTGCGCCATGG--AGGAAA-TG-TA-AGTGA-CAC-ACGGT-ACC-AGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 1 1 11 11 1 111 1 1 111 1 2 1 222222 1 1 2222222 1 11 1111111 11 1 1 1 66666666666666 33333 222 1 1 22222 11 1 1 444 1 1 1 11 1 222222222222222222222222 11111 22222 22 1 1 555555555 1 1 333333 1 444444444444 5555555555 11111111 22222 222 222222 11 2222 3333333333333 1 444444444444444444444444444444444444444444444 1 444444444444 1 333 55555555555555555 111 1 11 1 333333333 1 1111 1 1 11 222 8888888888888888888888888888 1 1 222 111 1 1 11 1 44444444444 1 11 11 1 44444444 1 11 22 1 222 1 1 1 11 1 66666666666666666666666 1 22 1 22 333333 11 1111 1 3333 11 2222 2222222 22222 1 11 111 1 1 1 1 1 11 22222 111 22222 22222222 1 11 222222222222 11 11 222222222 1 11 1111 3333 111 1111111111 111 4444444444444444 111111 1111 3333333333333 11111 11111 111111 3333333 111 11 222222222222222 11 1111 2222 22222222 222 111 1
lowQualScore : 3 3 2 0 0 0 33 55 33 2 0 777 2 0 0 777 0 0 0 2 555555 3 0 0000000 0 33 4444444 33 0 2 0 2 2 2 7 3 3 1 7 6 3 6 99999999999999 33333 0 6 7 1 7 555 3 7 3 77777 7 44 3 3 7 333 3 2 2 7 88 7 3 6 888888888888888888888888 66666 22222 00 3 2 888888888 7 6 3 3 0 0 6 7 888888 3 7 1 888888888888 8888888888 0 88888888 00000 8 333 333333 0 88 1111 3333333333333 7 0 3 3 888888888888888888888888888888888888888888888 7 0 3 111111111111 0 111 33333333333333333 444 0 7 1 1 7 11 3 7 7 7 888888888 7 3 4444 3 3 6 88 333 7 6 3333333333333333333333333333 3 7 3 555 999 1 7 3 0 3 44 3 33333333333 3 88 44 7 3 7 88888888 3 44 7 55 6 7 3 7 333 3 3 3 99 3 11111111111111111111111 3 6 00 6 6 2 7 00 999999 88 6 5555 6 1 6 3 3333 8 99 0 3333 3 1 6666666 0 8 1 8 0 5 22222 8 8 9 6 8 0 33 777 0 0 0 0 5 8 88 8 0 11 8 5 00000 8 88 8 444 22222 88 0 8 8 99999999 8 88 0 33 0 8 333333333333 11 8 11 77 6 22 000000000 1 6 3 2 2 00 1 0000 3 0000 6 111 2 6 6 1 8888888888 888 6 6 2 6 1 6 6 1111111111111111 6 6 999999 6 1 4444 6666666666666 3 66666 99 6 6 77777 7 6 6 111111 6 6 1 6 6 9 8 2222222 000 11 11 0 66 99 0 666666666666666 0 8 66 7777 8 8 5555 22222222 0 0 5 66 222 444 0 8 8 55
lowQualScore : . . . . . . .. .. .. . . ... . . . ... . . . . ...... . . ....... . .. ....... .. . . . . . . . . . . . . . . .............. ..... . . . . . ... . . . ..... . .. . . . ... . . . . .. . . . ........................ ..... ..... .. . . ......... . . . . . . . . ...... . . . ............ .......... . ........ ..... . ... ...... . .. .... ............. . . . . ............................................. . . . ............ . ... ................. ... . . . . . .. . . . . ......... . . .... . . . .. ... . . ............................ . . . ... ... . . . . . .. . ........... . .. .. . . . ........ . .. . .. . . . . ... . . . .. . ....................... . . .. . . . . .. ...... .. . .... . . . . .... . .. . .... . . ....... . . . . . . ..... . . . . . . .. ... . . . . . . .. . . .. . . ..... . .. . ... ..... .. . . . ........ . .. . .. . . ............ .. . .. .. . .. ......... . . . . . .. . .... . .... . ... . . . . .......... ... . . . . . . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . . ...... . . . . . . . ....... ... .. .. . .. .. . ............... . . .. .... . . .... ........ . . . .. ... ... . . . ..
lowQualScore : 2 2 5 0 0 0 88 88 88 5 0 555 5 0 0 555 0 0 0 5 222222 3 0 5555555 0 88 0000000 22 0 5 0 5 5 5 0 2 2 0 3 7 3 7 00000000000000 33333 7 7 3 0 3 000 3 3 3 77777 3 77 3 3 3 333 3 0 0 3 33 3 3 7 333333333333333333333333 77777 77777 77 3 0 000000000 3 7 3 3 7 7 7 3 333333 3 3 0 000000000000 3333333333 7 00000000 00000 0 888 000000 6 66 2222 0000000000000 0 0 2 2 000000000000000000000000000000000000000000000 0 0 2 222222222222 0 222 55555555555555555 888 0 3 0 0 3 00 3 3 3 3 000000000 3 3 3333 3 3 7 33 333 3 7 0000000000000000000000000000 3 3 3 777 000 0 3 3 7 3 00 3 77777777777 3 33 00 3 3 3 33333333 3 00 3 33 7 3 3 3 333 3 3 3 33 3 33333333333333333333333 3 7 77 7 7 0 3 00 777777 33 7 7777 7 0 7 3 3333 0 00 6 0000 8 0 0000000 8 0 4 0 8 6 66666 0 0 6 4 0 0 88 555 0 0 0 0 5 0 88 0 8 00 0 0 00000 0 88 0 000 88888 88 8 0 0 00000000 0 22 6 00 6 0 888888888888 00 0 00 55 7 77 777777777 0 7 3 5 5 33 7 8888 2 0000 7 777 5 7 7 7 5555555555 333 7 7 5 7 0 7 7 8888888888888888 7 7 222222 7 0 2222 7777777777777 5 77777 22 7 7 77777 3 7 7 888888 7 7 7 7 7 3 0 2222222 666 44 66 6 22 44 8 888888888888888 8 0 66 0000 0 0 0000 00000000 8 8 0 44 000 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGAGA-TTGCTTTGAATTCGCTTTAAAA-TTGTGAAG---AAACTGCGC-ATGG--GGAAAT-TA-TA-AGTGA-CAC-ACG-T-ACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTT--TG--C-----------TGTAGGCC-----CCATT-CAA--CCAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--T--T--ATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATAAAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTT-CAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT------GAATATGACCGAGATTCCAAAAAATGTGT---GTTTGC-GTTGAAAAA----------CAAGGGGGGGGGGC---AACAATTATGTA-----CG-TGTA---TACATGTGTATAAGATCTA------TCTACA-GTGAC----ATATACGATAACCTACTTACCTTGGTA-CTACTTCTGG-TGCCTGTGATGATAAATAAATGTCATGT-------A-A-C-TAA-ATTTTGTT--ACAA-GATGT--------GG-TG-TGTAC-TACTGTACATGTAT-ACA---GTGTCTAATTGG--------TGG---ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCATGGC--ATGATCTATTACAAAACAATTCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAAATTA---TTTAG--TCAATTTGT---------TTTACA-----------T-ACA-TG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTTTTTTAACTCAATAAT-AGAATTA--TTTTATGTTCA--TATTATTTGTAACATTGTGTATTGCATCAGTA-AAATATATA---ATGT----TATTTTGC--------TTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTGCTTCAAAACAAA-ACCTATT-TTTGCAAT----------TA-A-----A---ACTA-TACACTGGGGGGGGGGGGGGGAAAA--CTAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTG-AAGCT---TTGAGGTGTGTGAAGG--TGAGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAG--TTAAATTTATGAGTCCTAATGCA--TTTTTTAT-G-CTTCTAAATACA-------A-AGTG-ATGTTT-GTGCAT--------------TTT-TAAAAGATAA-ATTGTTA-TA-TCTCTTC--TAAATGT---GC-AT-GC-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTG-----TTTTCTTACA-ATGTCA-TTTGATAATACTTG-GT---ACAGGCAGCA-T---TTTAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TA-TT--AGATCAA-CCT--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT--G-TAT-TTT---A-CAATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-ATA-TCTGTGC-AAATT-CCC-AAG-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATTA-TTTT-GGAA--T---CAAAGAAT-TTTT-ATATT-TCAAGAACTATACA-TTGATCA-------TGAGTAAATATATATATTTGT-CAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|10 : ttGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCTA-TTACCT--GTACATAC-TCTGG-TGCCTGTGATAATAAATAAATGTCATGT-------A-ACC-TAA-A-TTT--T--ACAATGA--T--------GGATG-TGTACAT---------GTAT-ACACATGTGTCTAAT--G--------T-----ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAG-CTTCTAAATGCA-------ATGGTT-GTGTAT-GTGCACAATATGATGGTG--TTT-TAAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGC-ATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACGAGA-TTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-ACGGTTACCCAGAAAGGATAGTAGGAGTGAGAT-ACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGTGCTG--CA-----CCCAGTGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTT--TTTATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATAAAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCAC--ACCACACACGC--CCCTT-CAACCTAATGAA-AGTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAG-ATGACCGAGATTCCCAAAATTTT-TTTTGTTT-CTGTTAAAAAA----------AAAAGGGGGGGGGTCTTA-C--TTATGTACTGTATG-TGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCTC-CTA--T--ACA-ATACTTCTGA-GGCCTGTGA-AATAAATAAATGTTGTGT-------GTA-TGTAA----CC--T--ACAA-GAGCT--------GGATG-TG-AT-T---------GTAT-ACAAT-GTGTCTTAA--G--------TGT---ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCAG-ATCGACTT--A-ATATTTTTG-----------G--CCATT-TAAAAGAATT-ATATTAACACATATCTAAAG-CATTTTCAT--AAATCA---TT-AGGGTCAATTTGTAG--AACAATTTAAAAT-------T-TTACAATATATTT-GTAGGTTTTTG-------GATATCTTA-A-TTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACTG-CAA-GATTTTAAAGAATGCAA-AG------TT---TCAATAGCCAATATCA--ATGT-TGGTCAAAGATT-TTAA-AA--------ACT-CAATAATAGAAATT-ATC-TTTTTTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAA--ATATCCAATT-TTAATAATGTT--AAGCTGCCTC-AGGTTGGTGAAGG--GGA-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCG--ATTTAATTTATGAGCCCCTCT-CATTTTTTTTAT-G-CATCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGATA--TTTATATAAGATAT-AT-GTTAGCA-TCT-TTC--TAAATGT---GC-AT-GT-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTC-----TTTGTTTACAGAT-TCA-TTTGATAATACTTG-GT---A-CAGCAACA-T---TTTTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AG-TT--AGACCCA--CC--TATC--AC-AGGCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT---------TAT-T------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------T-AAGTT-CCC-AAGTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATTA-TTTT-GGAA--T---C-AAGCAT-TT----TATT-TCAA-CACAATGCA-TTGATCAATAATA-TGAA-AAATAT-CCTA--TGC-CAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAA-CTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-GA-AACAGTGAACACCACGGT-ACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGTGCTGTGCATTAGCCC---TATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT--TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTA-GT-AATAATACATGTATAA-GTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCA-CCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT------GAG-A-GACCGAGATTCCAAAACAAAT-T---G------GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGG---G-TA-ATATGTA-----TGGTGTA---TACATGTGAATAAGATTTA------TCTAC--GTGAC----GTATACGATAACCTAATT-------TC-ATAACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAA-A-C-TAAGATTTT--TGTACAA-G-TCTCAGAGAGCGGGTGATGTAG-T---------ATACCACA---ATGTGCATT--GATTGAGTATGGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT--GCCAT--CTCATGATCTATT-TAAAACAATCTCCATTAA-GCATATCTAAAATCATTTTCAT--AAATCAACATTTAGGGTCAACTAGTACTTAAC--TTTACAACATACATATGT-ACA-TGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAGTGGT-CATATCACAATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAG-AATTTATCACTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTG-TTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAGA-----ACGGAATACTACACT---GGGAGGGGTTCGAAGATCCTAAAATGACAACAAAAAGAATAT-CATTTCTTAATAA-GTTGAAAGCT---T---AGTTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCAT-CCTGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA-----TTTG---------AAATACAAACAATTATGGTTAATGTTTAGTGCATAGTATGATATAT--TTT-TAAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTT-TTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTC-ATG-ATCA-ACTCCAAGT----AATTT--AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAA-----ACACCA-A-GGCTGTTTT--GATAT-TTT---ACCAATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-ATA-T-TGTGC-AA-TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACA-TA-TTTT-GGAA--T---C-AAGAA--TTTT-ATATTATCAAACAGTATGCA-TTGATCAAT--T--TG-ATGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTC-----TTTTCTTACAGAT-TCA-TTT-ATAATACTTGCGT---ACAGCAAGCAAT---TTTAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AAT---------------------A-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCC-TTTT-C-CCGGCAAAAAA---T-ATTC-TACTACAATAGAAAAAA-TATAACA-A-GGCTGTTTT--GGTAT-TTTTATACCAATGT-GAACC-TTGCAAC--A-TG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGC-ATGT---CC-AAG-------T--------A-TGT-AA------AAGA-AAGAGG-ACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATTA-TTTTTGGAA--T---C-AAGAAT-TTTTTATATT-TCA-GCACTATGCAATTGATCAAT--T--TGATTA--TAAATATATTTGC-CAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGGA-TTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAAA--------AATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -AC-AAGCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTGTTTTTGG-TAT-TTT---ACCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-ATA-TCTGTGC-AAGTTTCCC-AAG-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAA-CACTATACA-TTGATCA-T--TCATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACTTTTTTAA-AACGTCATAATGCA-------GTTTTC-GTGCAC-GTGC-TCATATAATGAGTGTTTT-TAAAAAGTAT-ATCATTTACA-CCC-ATA--TGAATTTTAAGCTAT-GCATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT-------------TTTTTCCACAGAT-TC--TTGGATAATACTTG-GT---ACCAGTAGCA------GCAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAG-CTGAAGATCAACCCC--CACCATAC-AGGTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA-GG-TGTTTTTCT-TATGTTT---GCAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTATA-TCAGTGCAAAGTT-CCC-CAG-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-TA-TTTA-AGAAGCTTGAC-ATTAATATTCT-AT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAAG---AC-CTGCGCCATGG--AGGAAA-TG-TA-AGTGA-CAC-ACGGT-ACC-AGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 1 1 11 11 1 111 1 1 111 1 2 1 222222 1 1 2222222 1 11 1111111 11 1 1 1 66666666666666 33333 222 1 1 22222 11 1 1 444 1 1 1 11 1 222222222222222222222222 11111 22222 22 1 1 555555555 1 1 333333 1 444444444444 5555555555 11111111 22222 222 222222 11 2222 3333333333333 1 444444444444444444444444444444444444444444444 1 444444444444 1 333 55555555555555555 111 1 11 1 333333333 1 1111 1 1 11 222 8888888888888888888888888888 1 1 222 111 1 1 11 1 44444444444 1 11 11 1 44444444 1 11 22 1 222 1 1 1 11 1 66666666666666666666666 1 22 1 22 333333 11 1111 1 3333 11 2222 2222222 22222 1 11 111 1 1 1 1 1 11 22222 111 22222 22222222 1 11 222222222222 11 11 222222222 1 11 1111 3333 111 1111111111 111 4444444444444444 111111 1111 3333333333333 11111 11111 111111 3333333 111 11 222222222222222 11 1111 2222 22222222 222 111 1
lowQualScore : 3 3 2 0 0 0 33 55 33 2 0 777 2 0 0 777 0 0 0 2 555555 3 0 0000000 0 33 4444444 33 0 2 0 2 2 2 7 3 3 1 7 6 3 6 99999999999999 33333 0 6 7 1 7 555 3 7 3 77777 7 44 3 3 7 333 3 2 2 7 88 7 3 6 888888888888888888888888 66666 22222 00 3 2 888888888 7 6 3 3 0 0 6 7 888888 3 7 1 888888888888 8888888888 0 88888888 00000 8 333 333333 0 88 1111 3333333333333 7 0 3 3 888888888888888888888888888888888888888888888 7 0 3 111111111111 0 111 33333333333333333 444 0 7 1 1 7 11 3 7 7 7 888888888 7 3 4444 3 3 6 88 333 7 6 3333333333333333333333333333 3 7 3 555 999 1 7 3 0 3 44 3 33333333333 3 88 44 7 3 7 88888888 3 44 7 55 6 7 3 7 333 3 3 3 99 3 11111111111111111111111 3 6 00 6 6 2 7 00 999999 88 6 5555 6 1 6 3 3333 8 99 0 3333 3 1 6666666 0 8 1 8 0 5 22222 8 8 9 6 8 0 33 777 0 0 0 0 5 8 88 8 0 11 8 5 00000 8 88 8 444 22222 88 0 8 8 99999999 8 88 0 33 0 8 333333333333 11 8 11 77 6 22 000000000 1 6 3 2 2 00 1 0000 3 0000 6 111 2 6 6 1 8888888888 888 6 6 2 6 1 6 6 1111111111111111 6 6 999999 6 1 4444 6666666666666 3 66666 99 6 6 77777 7 6 6 111111 6 6 1 6 6 9 8 2222222 000 11 11 0 66 99 0 666666666666666 0 8 66 7777 8 8 5555 22222222 0 0 5 66 222 444 0 8 8 55
lowQualScore : . . . . . . .. .. .. . . ... . . . ... . . . . ...... . . ....... . .. ....... .. . . . . . . . . . . . . . . .............. ..... . . . . . ... . . . ..... . .. . . . ... . . . . .. . . . ........................ ..... ..... .. . . ......... . . . . . . . . ...... . . . ............ .......... . ........ ..... . ... ...... . .. .... ............. . . . . ............................................. . . . ............ . ... ................. ... . . . . . .. . . . . ......... . . .... . . . .. ... . . ............................ . . . ... ... . . . . . .. . ........... . .. .. . . . ........ . .. . .. . . . . ... . . . .. . ....................... . . .. . . . . .. ...... .. . .... . . . . .... . .. . .... . . ....... . . . . . . ..... . . . . . . .. ... . . . . . . .. . . .. . . ..... . .. . ... ..... .. . . . ........ . .. . .. . . ............ .. . .. .. . .. ......... . . . . . .. . .... . .... . ... . . . . .......... ... . . . . . . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . . ...... . . . . . . . ....... ... .. .. . .. .. . ............... . . .. .... . . .... ........ . . . .. ... ... . . . ..
lowQualScore : 2 2 5 0 0 0 88 88 88 5 0 555 5 0 0 555 0 0 0 5 222222 3 0 5555555 0 88 0000000 22 0 5 0 5 5 5 0 2 2 0 3 7 3 7 00000000000000 33333 7 7 3 0 3 000 3 3 3 77777 3 77 3 3 3 333 3 0 0 3 33 3 3 7 333333333333333333333333 77777 77777 77 3 0 000000000 3 7 3 3 7 7 7 3 333333 3 3 0 000000000000 3333333333 7 00000000 00000 0 888 000000 6 66 2222 0000000000000 0 0 2 2 000000000000000000000000000000000000000000000 0 0 2 222222222222 0 222 55555555555555555 888 0 3 0 0 3 00 3 3 3 3 000000000 3 3 3333 3 3 7 33 333 3 7 0000000000000000000000000000 3 3 3 777 000 0 3 3 7 3 00 3 77777777777 3 33 00 3 3 3 33333333 3 00 3 33 7 3 3 3 333 3 3 3 33 3 33333333333333333333333 3 7 77 7 7 0 3 00 777777 33 7 7777 7 0 7 3 3333 0 00 6 0000 8 0 0000000 8 0 4 0 8 6 66666 0 0 6 4 0 0 88 555 0 0 0 0 5 0 88 0 8 00 0 0 00000 0 88 0 000 88888 88 8 0 0 00000000 0 22 6 00 6 0 888888888888 00 0 00 55 7 77 777777777 0 7 3 5 5 33 7 8888 2 0000 7 777 5 7 7 7 5555555555 333 7 7 5 7 0 7 7 8888888888888888 7 7 222222 7 0 2222 7777777777777 5 77777 22 7 7 77777 3 7 7 888888 7 7 7 7 7 3 0 2222222 666 44 66 6 22 44 8 888888888888888 8 0 66 0000 0 0 0000 00000000 8 8 0 44 000 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGAGA-TTGCTTTGAATTCGCTTTAAAA-TTGTGAAG---AAACTGCGC-ATGG--GGAAAT-TA-TA-AGTGA-CAC-ACG-T-ACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTT--TG--C-----------TGTAGGCC-----CCATT-CAA--CCAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--T--T--ATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATAAAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTT-CAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT------GAATATGACCGAGATTCCAAAAAATGTGT---GTTTGC-GTTGAAAAA----------CAAGGGGGGGGGGC---AACAATTATGTA-----CG-TGTA---TACATGTGTATAAGATCTA------TCTACA-GTGAC----ATATACGATAACCTACTTACCTTGGTA-CTACTTCTGG-TGCCTGTGATGATAAATAAATGTCATGT-------A-A-C-TAA-ATTTTGTT--ACAA-GATGT--------GG-TG-TGTAC-TACTGTACATGTAT-ACA---GTGTCTAATTGG--------TGG---ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCATGGC--ATGATCTATTACAAAACAATTCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAAATTA---TTTAG--TCAATTTGT---------TTTACA-----------T-ACA-TG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTTTTTTAACTCAATAAT-AGAATTA--TTTTATGTTCA--TATTATTTGTAACATTGTGTATTGCATCAGTA-AAATATATA---ATGT----TATTTTGC--------TTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTGCTTCAAAACAAA-ACCTATT-TTTGCAAT----------TA-A-----A---ACTA-TACACTGGGGGGGGGGGGGGGAAAA--CTAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTG-AAGCT---TTGAGGTGTGTGAAGG--TGAGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAG--TTAAATTTATGAGTCCTAATGCA--TTTTTTAT-G-CTTCTAAATACA-------A-AGTG-ATGTTT-GTGCAT--------------TTT-TAAAAGATAA-ATTGTTA-TA-TCTCTTC--TAAATGT---GC-AT-GC-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTG-----TTTTCTTACA-ATGTCA-TTTGATAATACTTG-GT---ACAGGCAGCA-T---TTTAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TA-TT--AGATCAA-CCT--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT--G-TAT-TTT---A-CAATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-ATA-TCTGTGC-AAATT-CCC-AAG-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATTA-TTTT-GGAA--T---CAAAGAAT-TTTT-ATATT-TCAAGAACTATACA-TTGATCA-------TGAGTAAATATATATATTTGT-CAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|10 : ttGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCTA-TTACCT--GTACATAC-TCTGG-TGCCTGTGATAATAAATAAATGTCATGT-------A-ACC-TAA-A-TTT--T--ACAATGA--T--------GGATG-TGTACAT---------GTAT-ACACATGTGTCTAAT--G--------T-----ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAG-CTTCTAAATGCA-------ATGGTT-GTGTAT-GTGCACAATATGATGGTG--TTT-TAAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGC-ATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACGAGA-TTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-ACGGTTACCCAGAAAGGATAGTAGGAGTGAGAT-ACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGTGCTG--CA-----CCCAGTGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTT--TTTATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATAAAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCAC--ACCACACACGC--CCCTT-CAACCTAATGAA-AGTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAG-ATGACCGAGATTCCCAAAATTTT-TTTTGTTT-CTGTTAAAAAA----------AAAAGGGGGGGGGTCTTA-C--TTATGTACTGTATG-TGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCTC-CTA--T--ACA-ATACTTCTGA-GGCCTGTGA-AATAAATAAATGTTGTGT-------GTA-TGTAA----CC--T--ACAA-GAGCT--------GGATG-TG-AT-T---------GTAT-ACAAT-GTGTCTTAA--G--------TGT---ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCAG-ATCGACTT--A-ATATTTTTG-----------G--CCATT-TAAAAGAATT-ATATTAACACATATCTAAAG-CATTTTCAT--AAATCA---TT-AGGGTCAATTTGTAG--AACAATTTAAAAT-------T-TTACAATATATTT-GTAGGTTTTTG-------GATATCTTA-A-TTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACTG-CAA-GATTTTAAAGAATGCAA-AG------TT---TCAATAGCCAATATCA--ATGT-TGGTCAAAGATT-TTAA-AA--------ACT-CAATAATAGAAATT-ATC-TTTTTTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAA--ATATCCAATT-TTAATAATGTT--AAGCTGCCTC-AGGTTGGTGAAGG--GGA-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCCG--ATTTAATTTATGAGCCCCTCT-CATTTTTTTTAT-G-CATCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGATA--TTTATATAAGATAT-AT-GTTAGCA-TCT-TTC--TAAATGT---GC-AT-GT-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTC-----TTTGTTTACAGAT-TCA-TTTGATAATACTTG-GT---A-CAGCAACA-T---TTTTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AG-TT--AGACCCA--CC--TATC--AC-AGGCTATCCCTTTTAA-CC----AAAAACAATAATTCATACTA------AAAAAAATA----------CT---------TAT-T------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------T-AAGTT-CCC-AAGTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATTA-TTTT-GGAA--T---C-AAGCAT-TT----TATT-TCAA-CACAATGCA-TTGATCAATAATA-TGAA-AAATAT-CCTA--TGC-CAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-ATTCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAA-CTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-GA-AACAGTGAACACCACGGT-ACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGTGCTGTGCATTAGCCC---TATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT--TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTA-GT-AATAATACATGTATAA-GTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCA-CCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT------GAG-A-GACCGAGATTCCAAAACAAAT-T---G------GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGG---G-TA-ATATGTA-----TGGTGTA---TACATGTGAATAAGATTTA------TCTAC--GTGAC----GTATACGATAACCTAATT-------TC-ATAACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAA-A-C-TAAGATTTT--TGTACAA-G-TCTCAGAGAGCGGGTGATGTAG-T---------ATACCACA---ATGTGCATT--GATTGAGTATGGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT--GCCAT--CTCATGATCTATT-TAAAACAATCTCCATTAA-GCATATCTAAAATCATTTTCAT--AAATCAACATTTAGGGTCAACTAGTACTTAAC--TTTACAACATACATATGT-ACA-TGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAGTGGT-CATATCACAATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAG-AATTTATCACTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTG-TTTAAAACAAAAACCTATTGTTTGCAATAAAATGT---TAGA-----ACGGAATACTACACT---GGGAGGGGTTCGAAGATCCTAAAATGACAACAAAAAGAATAT-CATTTCTTAATAA-GTTGAAAGCT---T---AGTTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCAT-CCTGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA-----TTTG---------AAATACAAACAATTATGGTTAATGTTTAGTGCATAGTATGATATAT--TTT-TAAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTT-TTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTC-ATG-ATCA-ACTCCAAGT----AATTT--AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTT-A---AACCAAAAACAAT-ATTT-TACTACAATAGAAA-----ACACCA-A-GGCTGTTTT--GATAT-TTT---ACCAATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-ATA-T-TGTGC-AA-TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACA-TA-TTTT-GGAA--T---C-AAGAA--TTTT-ATATTATCAAACAGTATGCA-TTGATCAAT--T--TG-ATGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAGATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTC-----TTTTCTTACAGAT-TCA-TTT-ATAATACTTGCGT---ACAGCAAGCAAT---TTTAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-AAT---------------------A-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCC-TTTT-C-CCGGCAAAAAA---T-ATTC-TACTACAATAGAAAAAA-TATAACA-A-GGCTGTTTT--GGTAT-TTTTATACCAATGT-GAACC-TTGCAAC--A-TG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGC-ATGT---CC-AAG-------T--------A-TGT-AA------AAGA-AAGAGG-ACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATTA-TTTTTGGAA--T---C-AAGAAT-TTTTTATATT-TCA-GCACTATGCAATTGATCAAT--T--TGATTA--TAAATATATTTGC-CAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGGA-TTCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAAA--------AATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -AC-AAGCTATCCCTTTT-AACCGGCAAAAA-CAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTGTTTTTGG-TAT-TTT---ACCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-ATA-TCTGTGC-AAGTTTCCC-AAG-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAA-CACTATACA-TTGATCA-T--TCATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-ATTCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACTTTTTTAA-AACGTCATAATGCA-------GTTTTC-GTGCAC-GTGC-TCATATAATGAGTGTTTT-TAAAAAGTAT-ATCATTTACA-CCC-ATA--TGAATTTTAAGCTAT-GCATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT-------------TTTTTCCACAGAT-TC--TTGGATAATACTTG-GT---ACCAGTAGCA------GCAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAG-CTGAAGATCAACCCC--CACCATAC-AGGTCATCCT-----------------ATAAT-A--------------GAAGAA---ATACCGCA-GG-TGTTTTTCT-TATGTTT---GCAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTATA-TCAGTGCAAAGTT-CCC-CAG-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-TA-TTTA-AGAAGCTTGAC-ATTAATATTCT-AT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAAG---AC-CTGCGCCATGG--AGGAAA-TG-TA-AGTGA-CAC-ACGGT-ACC-AGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
blockSeqs : T T G C A G CC CA AC C . ATG G C A CCA G T C C GACGT A A CTAAAG C TG GTAACA AA C G T C G G A T A G A G . G TGCATTAGCCC TACTG G T T T CG A A . GTT T TA A T T GGT A T C A CA A G G . ACCC TCCC A T G CTTCTAAGT A C C A C T CGACTC . T T TTTTGTTTCT AGGAGAGGGG CTTAC CTGTA G CAC CATGTA AT TGTA TTACCTGTAC T G T T TTATGTAAACTAAGATTTTTGTACAAGTCTCAGAGAGC A A T CAT C CAT GATTGAGTATGGCCT AC G T A G T AT G T T T CCATCTC A . TCCA C T C . ACA T G ACTTAACTTTACAACATACATATGT A T T GTT TCC G A . . AG . TT C CA T A . T . . GA T AC C A . A TAC A T . AA G GAAATGTATATAAACGGAAA C G TC G C C T GA GCCTC TC G TAG G G C C AATA . AC AAG T T AACAATT A A A A AGTGT A A T A G . AA TAA T G A A T T TA A CA G G CTTTT . AT C TAG TTTG AA T T AGACCCAG A GA A CT T AATTGGAAG GA C AG AT A CT AACCGGCA C A A C G AA C AAG T TGG G TAT C G T A TGAACAT TCT T A C A G T A TATCGCGTA A T GTTTTT T G TCCA CGACAAAACTCAA A CGTTA CA T A TGTGA T A T GCTTGA . A T T A A A ATAATA ATT AA AA TT TT TAACAAATGATA T AT AACT T A CAGA TCTTC C TA GTG GGA T A T GA
blockSeqs : T T G . . . . CA . C . . G . . . . A . C ATG . . TAC . . GAAAC A . G . C G G G T A A A . . G CACCCAG . G T G T TT . . . TGT T T . . . . . . T . . . . . . TA ACC . . . . . . . . C . . . . A TG . ACA . . CAC . A . CTATACA C . T T AACCTAAATTTTACAATGAT A . T TT . AT GTGT A . . G T . . . . . . . . . ATA . . C . . . G AGAACAATTTAAAATTTT . T . . A A . . . G . TT . . C A . . . . G . T C A . A . . . . G . AAAATGTTAGAACGG . . T . . . . . T . . A . A . . GA . TT AAA A T . . T . A GTG . . T G . . . . . . . . T . T . . . G . . A . . AT A . . . . GC A C . CAAGTAAT . . . A . CC CCCGGCA C . C C G AA T CAG T TCT . . C . . G AATGTT G . . C . G . . TACAAACT . . . . G . . A . . . . A T . . T . . T . . G . TTCA AA AC TA TT C TAATATG . A . . . A ACTT C TA A . T . . A
blockSeqs : T T . . . . . A . . . . . . . . . . . . . . GAC . . TGTA . . G . . . . A . . GTA . . TA . . . ATTTC . . . . GTATGTAACCTACAAGAGCT G . . GT . . GT G . . AC TG G A . . T . A ATA . . C G . . . . . . . . . . T . . . . . . A . . T A . . . . CT . G . AGTAG . . . A . CT AAACC C . . C G A T AG T GA . . C . . A ATGTCT . . . C . G . . T . . . . G . . A . . . . A T . . T . . T . . G . ATT AT AA T . C TAGTA . A . . . . T . T . . T . . G
blockSeqs : ACA . . . . . . . . . . . . A . C TAT . . . A . . . . . . . . . . . . . . . . . . . . . . A . . . . . T AACC T . . . . . T AG T GG . . C . . A AACAT . . . . . G . . T . . . . A . . T . . . . T . . . T . . C . . . . ATT AT . . . . TGTGT . A . . . . T . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . ATG . . . . . . . . C . . . . . . . . . . . . . . . . T . . . . . .
blockSeqCons : ACA***** CA* A* AC G*** NTN** T**** AGTAG******* AACC***** AG** GN** AACGT***** ATTA*** AT* ** A*
originalCons : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TG-TGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAN-G-CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGANN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AA-TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTT-A-CCGGCAAAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTGTTTT--G-TAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--TGAATAAATATATATATTTGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGAATTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
finalCons : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGCACA-----TTATGTA-----TG-TGTACA-TACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT---TAGA-----A---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAG---CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGNTN--TTT-TAAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCAT----TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTCAGTAG-------TT--AGATCAA-CCC--TATCA-AC-AAGCTATCCCTTTTAACC-----AAAAACAAT-ATTC-TACTACAATAGAAAAAAATATACCAAG--GCTGTTTTGN--TAT-TTT---ACCAATGT-GAACC-TTGCAACAACGT-----GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATTA-TTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAATTA---TGAT-AAATATATATA--TGC-CAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGGA-TTCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 1 1 11 11 1 111 1 1 111 1 2 1 222222 1 1 2222222 1 11 1111111 11 1 1 1 66666666666666 33333 222 1 1 22222 11 1 1 444 1 1 1 11 1 222222222222222222222222 11111 22222 22 1 1 555555555 1 1 333333 1 444444444444 5555555555 11111111 22222 1111 222222 11 2222 3333333333333 1 444444444444444444444444444444444444444444444 1 444444444444 1 333 55555555555555555 111 1 11 1 333333333 1 1111 1 1 11 222 8888888888888888888888888888 1 1 222 111 1 1 11 1 44444444444 1 11 11 1 44444444 1 11 22 1 222 1 1 1 11 1 66666666666666666666666 1 1 1 22 333333 11 1111 1 3333 11 44444 2222222 1111 1 11 111 1 1 1 1 1 11 22222 111 22222 22222222 22222 11 2222222 11 11 222222222222 1 11 1111 1111 111 1111111111 111 4444444444444444 111111 1111 3333333333333 11111 11111 111111 222222 333333333333 222222222222222 1111 2222 22222222 222 111 1
lowQualScore : 3 3 2 0 0 0 33 55 33 2 0 777 2 0 0 777 0 0 0 2 555555 3 0 0000000 0 33 4444444 33 0 2 0 2 2 2 7 3 3 1 7 6 3 6 99999999999999 33333 0 6 7 1 7 555 3 7 3 77777 7 44 3 3 7 333 3 2 2 7 88 7 3 6 888888888888888888888888 66666 22222 00 3 2 888888888 7 6 3 3 0 0 6 7 888888 3 7 1 888888888888 8888888888 0 88888888 00000 0 9999 333333 0 88 1111 3333333333333 7 0 3 3 888888888888888888888888888888888888888888888 7 0 3 111111111111 0 111 33333333333333333 444 0 7 1 1 7 11 3 7 7 7 888888888 7 3 4444 3 3 6 88 333 7 6 3333333333333333333333333333 3 7 3 555 999 1 7 3 0 3 44 3 33333333333 3 88 44 7 3 7 88888888 3 44 7 55 6 7 3 7 333 3 3 3 99 3 11111111111111111111111 3 6 6 3 7 6 2 7 00 999999 88 6 5555 6 1 6 3 3333 8 99 0 11111 3 1 6666666 0 8 1 8 0 5 6666 8 8 8 9 6 8 0 33 777 0 0 0 0 5 8 88 8 0 11 8 5 00000 8 88 8 444 22222 88 0 8 8 99999999 8 88 00000 0 8 11 7777777 11 8 11 77 6 6 888888888888 6 3 1 2 00 1 0000 6 5555 6 111 2 6 6 1 8888888888 888 6 6 2 6 1 6 6 1111111111111111 6 6 999999 6 1 4444 6666666666666 3 66666 99 6 6 77777 7 6 6 111111 6 6 1 6 6 9 8 11 111111 8 999999999999 0 666666666666666 0 8 8 8 7777 8 8 5555 22222222 0 0 5 66 222 444 0 8 8 55
lowQualScore : . . . . . . .. .. .. . . ... . . . ... . . . . ...... . . ....... . .. ....... .. . . . . . . . . . . . . . . .............. ..... . . . . . ... . . . ..... . .. . . . ... . . . . .. . . . ........................ ..... ..... .. . . ......... . . . . . . . . ...... . . . ............ .......... . ........ ..... . .... ...... . .. .... ............. . . . . ............................................. . . . ............ . ... ................. ... . . . . . .. . . . . ......... . . .... . . . .. ... . . ............................ . . . ... ... . . . . . .. . ........... . .. .. . . . ........ . .. . .. . . . . ... . . . .. . ....................... . . . . . . . . .. ...... .. . .... . . . . .... . .. . ..... . . ....... . . . . . . .... . . . . . . . .. ... . . . . . . .. . . .. . . ..... . .. . ... ..... .. . . . ........ . .. ..... . . .. ....... .. . .. .. . . ............ . . . . .. . .... . .... . ... . . . . .......... ... . . . . . . . ................ . . ...... . . .... ............. . ..... .. . . ..... . . . ...... . . . . . . . .. ...... . ............ . ............... . . . . .... . . .... ........ . . . .. ... ... . . . ..
lowQualScore : 2 2 5 0 0 0 88 88 88 5 0 555 5 0 0 555 0 0 0 5 222222 3 0 5555555 0 88 0000000 22 0 5 0 5 5 5 0 2 2 0 3 7 3 7 00000000000000 33333 7 7 3 0 3 000 3 3 3 77777 3 77 3 3 3 333 3 0 0 3 33 3 3 7 333333333333333333333333 77777 77777 77 3 0 000000000 3 7 3 3 7 7 7 3 333333 3 3 0 000000000000 3333333333 7 00000000 00000 8 0000 000000 6 66 2222 0000000000000 0 0 2 2 000000000000000000000000000000000000000000000 0 0 2 222222222222 0 222 55555555555555555 888 0 3 0 0 3 00 3 3 3 3 000000000 3 3 3333 3 3 7 33 333 3 7 0000000000000000000000000000 3 3 3 777 000 0 3 3 7 3 00 3 77777777777 3 33 00 3 3 3 33333333 3 00 3 33 7 3 3 3 333 3 3 3 33 3 33333333333333333333333 3 7 7 3 3 7 0 3 00 777777 33 7 7777 7 0 7 3 3333 0 00 6 22222 8 0 0000000 8 0 4 0 8 6 6666 0 0 0 6 4 0 0 88 555 0 0 0 0 5 0 88 0 8 00 0 0 00000 0 88 0 000 88888 88 8 0 0 00000000 0 22 22222 6 0 00 6666666 00 0 00 55 7 7 000000000000 7 3 0 5 33 7 8888 7 7777 7 777 5 7 7 7 5555555555 333 7 7 5 7 0 7 7 8888888888888888 7 7 222222 7 0 2222 7777777777777 5 77777 22 7 7 77777 3 7 7 888888 7 7 7 7 7 3 0 88 666666 0 222222222222 8 888888888888888 8 0 0 0 0000 0 0 0000 00000000 8 8 0 44 000 000 6 0 0 88
consensus : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TGTGTACACTACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT-TA-------GAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCAG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTAT-G--CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGA-TGTTT-T-AAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AG-TT--AGATCAA-CCC--TATCA-AC-AAGCT-ATCCCTTTTAACC----AA-AAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTG-TTTT-GGTAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATT-ATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--ATGA-TAAATATATATATTTG-CCAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGG-AT-TCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
Reference ( family-2490 ) : NNCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGCCATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAACGAGA-TTGCTTTGAATTCGCTTGAAAA-TTGTGAAN---AN-CTGCGC-ATGG--GGGAAT-TA-TA-AGTGA-CAC-ACGGT-ACCCAGAAAGGATAGTAGGAGTGAGATTATACCCCATTTTCAGAACAAAANTCACAAGAAAAAATTGTTGT-ACGTGCTG--CA-----CC---TGTAGGCC-----CCGTTGCAGTTNCAATATTCAA-G-AGAGAAAAACAGATCGACA-CGTTTCAAATG-TAAGTT--T--TTTATCATACAATTGAATGTAA-TTTAACTGT-GACAGTGTG--ATTA-GTCAATAGTACATGCATAAAGTTCT--AACCGAGAATA-CACGTCTTATGCA------------------------CATAGCCCATACCCCCCCCCCCCCCCACCACACACGCA-CCCTT-CAACCCAATGAAGAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCGTTAAGTCGCTTTGCGCGGCCAGTTTCTGCTGTAAGTTT------GAG-ATGACCGAGATTCCAAAAAATNT-T---GTTT-C-GTTGAAAAA----------CGAGGGGGGGGGGC---A-CA-TTATGTA-----TGTGTACA-TACATGTGTATAAGATCTA------TCTACA-GTGAC----GTATACGATAACCTA-TTACCT--GTA-ATACTTCTGG-TGCCTGTGATAATAAATAAATGTCGTGT-------A-A-C-TAA-ATTTT--T--ACAA-GATCT--------GGATG-TGTAC-T---------GTAT-ACA---GTGTCTAAT--G--------TGG---ATGCATCAGGCCT-A-TATGCA-TAAAGAAATTATATACAACATAGTNTGNTAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCAT--C--ATGATCTATT-TAAAACAATTCATATTAA-GCATATCTAAAG-CATTTTCAT--AAATCA---TTTAGGGTCAATTTGTA---AAC--TTTACAAC-------T-T-ACA-TGTATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACANAGCACAACCACACATATTCA-ACGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAATAGT-AATATCA--ATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAGAAATTTATC-CTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAACAAAGACCTATT-TTTGCAATGAAATGT-TA-------GAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAAAGAATATCCATTTCTTAATAATGTTG-AAGCT---TC-AGGTTGGTGAAGG--TGAGAATTTATTGTCCCCTCTAA-AGATCCANCACTGCATCCCTGATAT-TGGCCCGG-ATTTAATTTATGAGCCCCTCT-CAACTTTTTTA--G--CNTCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGN-TNTTT-T-AAAAGATAT-ATCGTTAGCA-TCT-TTC--TAAATGT---GC-AT-GC-TTTG-TCTCAAT-ACTGATTT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTC-----TTTTTTTACAGAT-TCA-TTTGATAATACTTG-GT---ACCGGCAGCA-T---TTTAA-GTCAAAGAAC-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----AG-TT--AGATCAA-CCC--TATCA-AC-AAGCT-ATCCCTTTTAACC----AA-AAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A-GGCTG-TTTT-GNTAT-TTT---ACCAATGT-GAACC-TTGCAAC--AACG--T-GTACTTTGTTGGAGA---TTTTG-ATA-TCTGTGC-AAGTT-CCC-AAG-------T--------A-TGT-AA------AAGA-AGGAGGGACATG----AC-------------AAAAGAATTGCAATTAT-----TTTAAC--ACTG-ATGAG-GC----AGAGACATT-ATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAAGCACTATGCA-TTGATCAAT--T--ATGA-TAAATATATATA--TG-CCAATATTGACT---T-----ATG--ATCTTGTTTTG-TGTTGG-AT-TCAG----TTC-C-ATTGTGAC----CCCATAGGAATGTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|1 : CAAT-CACGCT-CCACGTCGTCAGGGGAGGTGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTTTCCGCC-TGA--CCTCCGTCAAAACAACCGA---TGGT-GC-AC---ATGGT-GA-G-GTGTTTAGATGCAG---AT-TTTTTAATGAGA-TTGCTTTGAATTCGCTTTAAAA-TTGTGAAG---AAACTGCGC-ATGG--GGAAAT-TA-TA-AGTGA-CAC-ACG-T-ACCCAGAAAGGATAGT-GGAGTGAGAATATACCCCATTTTCAGAACAAAATTCACA-GAAAAAATAATTGTTACTT--TG--C-----------TGTAGGCC-----CCATT-CAA--CCAATG--CAG-G-AGAGAAAAACAGATCGACA-CGTTTCAAATGGTAAGTT--T--T--ATCA-ATAATTGAATGTAA-TTTAACTGT-GACAGTGTGTAATTA-GTCAATAGTACATG-ATAAAGTTTT--AACCGAGAATA-CACGTCTTATGCACCCCCACTCCCCAACACACGCAACCATAGTCCATACCCCCCCCCCCCCCCAA-ACACACGCAACCCTT-CAACCCAATGAAAAGTAA-----AA--TAATGAAACAATGATTTCCCCACC-ATTCA-CCTTCATAAAGTTGCTTTGCGTGGC-AGTTTCTGCTGTAAGTTT------GAATATGACCGAGATTCCAAAAAATGTGT---GTTTGC-GTTGAAAAA----------CAAGGGGGGGGGGC---AACAATTATGTA-----CGTGTA---TACATGTGTATAAGATCTA------TCTACA-GTGAC----ATATACGATAACCTACTTACCTTGGTA-CTACTTCTGG-TGCCTGTGATGATAAATAAATGTCATGT-------A-A-C-TAA-ATTTTGTT--ACAA-GATGT--------GG-TG-TGTAC-TACTGTACATGTAT-ACA---GTGTCTAATTGG--------TGG---ATGCATCAGGCCTCA-TATGCA-TAAAGAAATTATATACAACATAGTTTGATAATTTAAATTACGATCAG-ATCGACTTTTATATATTTTTGCCATGGC--ATGATCTATTACAAAACAATTCAT-TTAA-GCATATCTAAAG-CATTTT-ATTAAAATTA---TTTAG--TCAATTTGT---------TTTACA-----------T-ACA-TG-ATTT-GCAGGGTTTTG--TCTGAGATATCATGTC-TTATTACCTGCACATAACACAAACACACATATTCATATGACTGGCAAA-ATTTTAAACAATGCAACAGATTTTTTTAACTCAATAAT-AGAATTA--TTTTATGTTCA--TATTATTTGTAACATTGTGTATTGCATCAGTA-AAATATATA---ATGT----TATTTTGC--------TTTCATTAATTT-GATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTGCTTCAAAACAAA-ACCTATT-TTTGCAAT--------TA--------AA---ACTA-TACACTGGGG-GGGGGGGGGGGAAAA-CTAAAATGACAACAAAAAGAATATCCCTTTTTTAATAATGTTG-AAGCT---TTGAGGTGTGTGAAGG--TGAGAATTTATTGTCCCCTCTAATAGATCCATCACTGCATCCCTGATAT-TGGCCCAG--TTAAATTTATGAGTCCTAATGCA--TTTTTTAT-G--CTTCTAAATACA-------A-AGTG-ATGTTT-GTGCAT-------------TTT-T-AAAAGATAA-ATTGTTA-TA-TCTCTTC--TAAATGT---GC-AT-GC-TTTG-TC-CAAT-ACTGAATT-GGCA-TTTGCACAATATTAAAAAAT--ATT-CTTGTTG-----TTTTCTTACA-ATGTCA-TTTGATAATACTTG-GT---ACAGGCAGCA-T---TTTAA-GTCAAAGAAT-C-ACA--------CTCT-TCATCAACAGAGCATACTGCGAATCAATC-ATCA-ACTC--AGT----TA-TT--AGATCAA-CCT--TATCA-AC-AAGCT-ATCCCTTTT-ACCGGCAAA-AAACAAT-ATTC-TACTACAATAGAAAAAAATATACCA-A--GCTG-TTT---GTAT-TTT---A-CAATGT-GAACC-TTGCAAC--AATG--T-ATACTTTG-TGGAGA---TTTTA-ATA-TCTGTGC-AAATT-CCC-AAG-------C--------A-TGT-AA------AAGA-AG--AGGACAAG----AC-------------AAAAGAATT-CAATTAT-----TTTAAC--ACTG-ATGAA-GC----AGATACATT-ATTTT-GGAA--T---CAAAGAAT-TTTT-ATATT-TCAAGAACTATACA-TTGATC--------ATGAGTAAATATATATATTTG-TCAATATTGACT---T-----ATG--ATCTTG-TTTG-TGTTGGAAT-TCAG----TTC-C-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGGCTGAAATACTAAGTCT---AC---TGTATTTA-ATAT-TTGTTTATAA-ATAGAATGAATTATAC
gi|10 : ttGGGGGC---A-CA-TTATGTA-----TGTGTACACTACATGTGTATAAGATCTA------TCTCCATGTAGTTGTAGTATACAATAACCTA-TTACCT--GTACATAC-TCTGG-TGCCTGTGATAATAAATAAATGTCATGT-------A-ACC-TAA-A-TTT--T--ACAATGA--T--------GGATG-TGTACAT---------GTAT-ACACATGTGTCTAAT--G--------T-----ATGCATCAGGCCT-A-TATGCAGTAAAGAA
gi|11 : acaaCAATTCACGCTTCCACGTCGTCAGGGGAGGTGGA-TTACC-ATCTTCG-CACAG-CCAATCAGAATCGCCCGGAAAAATTGTCCACCATGGACCCTCCGTCAAAACA-CCGA---T-GT-GCAACCCAATGGTGGA-GCGTGTTTAGATGCAGGACGT-TTTTtat
gi|13 : cTAATTAATGAACCCCTCT-CAACTGTTTTAAAG--CTTCTAAATGCA-------ATGGTT-GTGTAT-GTGCACAATATGATGG-TGTTT-T-AAAAGATATAATTGCTAACA-
gi|16 : ATTCACGCTTCCACGTCGTCAGGGGAGcactgtggacgaacaacatgcat
gi|2 : CAATTCACGCTTCCACGTCGTCAGGG-AGGCGGAGTTACC-ATCTTCG-CACAG-CCAATCAGAATCG--CGGGAGAATTGTCCGC-ATGA--CCTCCGTCAAAACA-CCGA---TGGT-GC-AC---ATGGT-GGTG-GTGTTTAGATGCAG---ATGTTTTTAACGAGA-TTACTTTCAATTCGCTTGAAAAATTGTGAAT---AC-CTGCGC-ATGG--GGGAATGTAACA-AGAG--CAC-ACGGTTACCCAGAAAGGATAGTAGGAGTGAGAT-ACACCCCATTTTCAGAACAAAAGTCACAAAAAATAATTGTT-T-ACGTGCTG--CA-----CCCAGTGTAGGCC-----CCATTGCAGTTTCAATATTCAACG-AGAGAAAAACAGATTGACA-CGTCTCAA-TG-TAAGTTGTT--TTTATCATACAATTGAATGTAAATTTAACTGT-GACAATGT---ATTAAGTTAATAGTACATGCATAAAGTTCT--AACCGAGAATAGCACGTCTTATGCA------------------------CATG---TATACCCTCCCCCCCAC--ACCACACACGC--CCCTT-CAACCTAATGAA-AGTAA---------TAATGAAACAATGATTTCCC-ACC-ATTCAACCTTCGTTAAGTCACTTTGCGTGGCCAGTTTC-GCTGTAAGTTTCGACTCGAG-ATGACCGAGATTCCCAAAATTTT-TTTTGTTT-CTGTTAAAAAA----------AAAAGGGGGGGGGTCTTA-C--TTATGTACTGTATGTGTATA--ACATGTGTATAAGATCTACATGTATCTAC--GTGAC----GTATACGATAACCTC-CTA--T--ACA-ATACTTCTGA-GGCCTGTGA-AATAAATAAATGTTGTGT-------GTA-TGTAA----CC--T--ACAA-GAGCT--------GGATG-TG-AT-T---------GTAT-ACAAT-GTGTCTTAA--G--------TGT---ATGCATCAGGCCA-G-TATGCA-TAAAGAAATTATGTACCACATAGTATGGTAATTTAAATT--GATCAG-ATCGACTT--A-ATATTTTTG-----------G--CCATT-TAAAAGAATT-ATATTAACACATATCTAAAG-CATTTTCAT--AAATCA---TT-AGGGTCAATTTGTAG--AACAATTTAAAAT-------T-TTACAATATATTT-GTAGGTTTTTG-------GATATCTTA-A-TTATTACCTGCACAGAGCACA-CCACACATATTCA-ACGACTG-CAA-GATTTTAAAGAATGCAA-AG------TT---TCAATAGCCAATATCA--ATGT-TGGTCAAAGATT-TTAA-AA--------ACT-CAATAATAGAAATT-ATC-TTTTTTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATT---AGAGCAAGACTGAGTTCAGAAT-GA-TTG-TTCAAAAACAAG-CCTATT-TTTGCAATGAAATGTATATAAACGGAAA---ACTA-TACACTGGGGGGGGGGGGTCGAAGAT-CTAAAATGACAACAAAA--AATATCCAATT-TTAATAATGTT--AAGCTGCCTC-AGGTTGGTGAAGG--GGA-AATGTATTGTCCCCTC--A-AGATCCAGCACTACATCTCTGATAT-TGACCC-G-ATTTAATTTATGAGCCCCTCT-CATTTTTTTTAT-G--CATCTAAATACA-------ATGGTT-ATGTTT-GTGCATAATATGATGA-TATTTAT-ATAAGATAT-AT-GTTAGCA-TCT-TTC--TAAATGT---GC-AT-GT-TTTG-TC-CAAT-ACTGATTT-GGCA-TTTGCATAATATTAAAAAAT--AGT-CTTGTTC-----TTTGTTTACAGAT-TCA-TTTGATAATACTTG-GT---A-CAGCAACA-T---TTTTA-GCC-AAGAAC-C-ACA--------CTAT-TCATCAACAGAGCATACT--GAATC-ATC-ATCA-ATCC--AGT----AG-TT--AGACCCA--CC--TATC--AC-AGGCT-ATCCCTTTTAACC----AA-AAACAATAATTCATACTA------AAAAAAATA----------CT---------TAT-T------------T-GAACC-TTGCAACTGAACA--T-GTACTTTGTTGGAGA---TTTTG-AT--------T-AAGTT-CCC-AAGTACAAACT--------A-TGT--A------AAGA-AGGAAGGACATG----ATCGACAAAACTCAAAAAAGAATTGCAATCAT-----TTTAAC--ACTG-ATGAGAGCTGTGAGAGACATT-ATTTT-GGAA--T---C-AAGCAT-TT----TATT-TCAA-CACAATGCA-TTGATCAATAAT--ATGA-AAAATAT-CCTA--TG-CCAATA-TGACTTAAT-----ATG---TCTATTTTTG-TGTTAG-AT-TCAG----TTC-CAACTGTGACCAGACCCATAGGAATGTGA---TCTTCT-AATTGGCTGATATACTAAGTCT---AC---TGTGTTTATATATATTATTTGTAA-ATA-AATGAATTATAC
gi|3 : AAA-CTGTAAACTAAAG-TCGTAA-ATGGTGGGAAAT-GA-AACAGTGAACACCACGGT-ACCCAGAGAG-ATA-TGGGAGTGAGATTATACCCCATTTTTAGAAACAAAATCACAAGAAAAAATTGTTGT-ACGTGCTGTGCATTAGCCC---TATAGGCCTACTGCTGCTGCAGTTGCAATATTCAA-TTAGAGAAAAACAGATCGGCAACGTTTCAAATG-TAAGTT--TGTTTTATTAT-CAATTGAATGTAA-TTTAACTGTTGACAG-GTGGTATTA-GT-AATAATACATGTATAA-GTTCTCAAACTGAGA-TA-CAC-TTTTATGCA------------------------CATAACCC---CCCCACCCCCTCTTC-CCACACACGCA-CCCTTTCAACCCAATGAAGAGCAACTTCTAAGTTAATGAAACAATT-TCCCCCCACCCATTCA-CCTTCATTAGGTCGCTTTGCGCGGCCAGTTTCTGTTGTAAATTT------GAG-A-GACCGAGATTCCAAAACAAAT-T---G------GTTGAAAAAAGGAGAGGGGCGAGTGGGAGGGGG---G-TA-ATATGTA-----TG-GTGTA-TACATGTGAATAAGATTTA------TCTAC--GTGAC----GTATACGATAACCTAATT-------TC-ATAACTCTGGGTTCTCGTGATAATAAATAAA-GTCGTGTTTATGTAA-A-C-TAAGATTTT--TGTACAA-G-TCTCAGAGAGCGGGTGATGTAG-T---------ATACCACA---ATGTGCATT--GATTGAGTATGGCCTATGCATCAGGCCT-ACTATGCA-TAAAGAAATTATA-ACACAATAGTGTGTTAAAT--AATTATGATCAGGATCGACTTTTATATATTT--GCCAT--CTCATGATCTATT-TAAAACAATCTCCATTAA-GCATATCTAAAATCATTTTCAT--AAATCAACATTTAGGGTCAACTAGTACTTAAC--TTTACAACATACATATGT-ACA-TGTATTTTGCAAGGTTTTGGTTCTGAGATATCATGTCCTTATTACCTGCACAAAGCACAACCACACATATTCA-ATGACTG-CAAAGATTTTAAAGAATGCAA-AG------TT---TCAGTGGT-CATATCACAATTT-CGGTCAAAGATT-TTTATAA--------ACT-CAATAATAG-AATTTATCACTATGTCATTTATTTTGTAACAAATGCTTCAT-AATTTAGATATTTACAGCGCAAGACTGAGTTCAGAATAGATTTG-TTTAAAACAAAAACCTATTGTTTGCAATAAAATGT-TA-------GAACGGAATACTACACT---GGGAGGGGTTCGAAGATCCTAAAATGACAACAAAAAGAATAT-CATTTCTTAATAA-GTTGAAAGCT---T---AGTTGATGAAGGTCTTAGGATTTATTGTCCCCTCTAG-A---CCAACACTGCAT-CCTGATATCTGGCCCAATATTTAATTTATGAGCCCCTCT-CA-----TTTG----------AAATACAAACAATTATGGTTAATGTTTAGTGCATAGTATGATAT-ATTTT-T-AAAAGATAT-ATTGCTAGCAGTCT-TTCAAAAAATGT---GC-ATGGC-TTTG-CCTCAAT-ACTGATTTAGGCA-TTT-CACAATATTAAAAAATCAGTT-CTT-TTCCTTTTTTTTTTTACAGAT-TTATTTTGATGATATTTG-GTTAGACCAGCAGCA-TTTGTTTA---TCAAAAAAT-C-ACA--------CTCT-TCATCAACAGAGTCCACTGATATTC-ATG-ATCA-ACTCCAAGT----AATTT--AGATCAA-CCCAGTATCA-ACAAAGCTGACCCCTTTAAACC----AA-AAACAAT-ATTT-TACTACAATAGAAA-----ACACCA-A-GGCTG-TTTT-GATAT-TTT---ACCAATTT-GAACC-TTG--GC--AACA--T-GTACTTTGTTGGGGAG--TTTTG-ATA-T-TGTGC-AA-TT-CCCAAAG-------T--------A-TGT-AAGTTTTTAAGA-AGGAGGGAC-TG----AC-------------AAAAGAATTGCAATTAT-----TCTAAC--ACAG-ATGAG-GC-----GAGACA-T-ATTTT-GGAA--T---C-AAGAA--TTTT-ATATTATCAAACAGTATGCA-TTGATCAAT--T---TGA-TGACTA-------------AATATCGACT---TAACAAATGATATCTTGTTTTGTTGTTAG-ATGTCAG----TTC-C-ATT-TGA-----CCCATAGGAATGTTAACTT----TAAATTGGCTGAAATAC---GTCTGTGACGGATGTATTTATAGAA-TTATATATGATATA
gi|4 : tttCAATTACTGATTT-GGCAATTTGCACAATATTAAAAAAT--ATTGCTTGTTC-----TTTTCTTACAGAT-TCA-TTT-ATAATACTTGCGT---ACAGCAAGCAAT---TTTAAAGTTAAAGAACTC-ACA--------CTCT-TCATCAACAGAGCATACTGCGAAT-----------------AAT----A--TT--AGATCAA-CCC--TATCA-AC-AAGCT-ATCCTTTTC--CC----GGCAAAAAAT-ATTC-TACTACAATAGAAAAAA-TATAACA-A-GGCTG-TTTT-GGTAT-TTTTATACCAATGT-GAACC-TTGCAAC--A-TG----GTACTTTGTTGGAGA---TTTTG-ATAATCTGTGC-ATGT---CC-AAG-------T--------A-TGT-AA------AAGA-AAGAGG-ACATG----AC-------------AAAAGAATTGCAATTAT-----TTTTA---ACTG-ATGAG-GC----AGGGACATT-ATTTTTGGAA--T---C-AAGAAT-TTTTTATATT-TCA-GCACTATGCAATTGATCAAT--TTGATTA-TAAATATAT-T---TG-CCAATATTGACT---T-----AGT--ATCTTGTTTTG-TGTTGG-AT-TCAGAACTTTC-C-ATTGTGACA---CCCATAGAAATGTTA---T----TAAA--------AATACTAAGTCT---AC---TGTATTTATATAT-TTGTTTATAA-ATAGATTGAATTATAC
gi|5 : -AC-AAGCT-ATCCCTTTTAACCGGC-AA-AAACAAT-ATTCCTACTACAATA-AAAAAAATATACCA-AAGGCTG-TTTTTGGTAT-TTT---ACCAATGT-GAACC-TTGCA-C--AATG--TTATACTTTGTTGGA-----TTTTT-ATA-TCTGTGC-AAGTTTCCC-AAG-------C--------AATGTTAA------AAGC-AAGAGGGACATG----AC-------------AAAAGA-TTGCA-TTAT-----TTTAAC--ACTG-ATGAG-GC----AGATACATTAATTTT-GGAA--T---C-AAGAAT-TTTT-ATATT-TCAA-CACTATACA-TTGATCATT--C--ATGA-TAAATATATATATTTGTTCAATATTGACT---T-----GTG--TTCTTGTTTTG-TGTTGG-AT-TCAG----TTCTC-ATTGTGAC----CCCATAGGAATTTTA---T----TAAATTGG-TGAAATACT-AGTCTA--AC---TGTATTTA-ATAT-TTGTTTATAA-ATAG-ATGAATTATACtatattaatgtacacctgggtatattttatagaatatattgcattaggggtagacctgaggggaaaaaaaaggggggggggtacatgcatgcccttataaatctagaacattcaaatgtagttcaacattctgtgaaagatggtattttagatacaatacaaataataaatatgtaagaaagcagatcgaaaacatttataaaatggaacggtaaacgcagcatatactgtttcagtttttaatcaaacaacattttaaaattccttagcaaaacaattaaactcgataattgtcccgtagttacccatctggcactagctgcagactgcagccctgtaaaaatattggaacaatttgttctgcagccatctctgcacaaataaacatgcattcttgctacgaaagcgtttacaatggctgtttctgcgtttttaatcagtgaaatttttgtgaacggaactttctctgagtgtgtcagatcatttgacaaattttctgtgaaaattcgtggtcaaacggacgattaacaagattacccagtgcaagatcgacatcgctctccatgttgtttacatgcaagttgacggagtcggtaaacacgtgtgtgacgttgccatcagtggcggagcgtggagagt
gi|6 : TCTATGAGCGACTCT-AAACTTTTTTA--AAACGTCATAATGCA-------GTTTTC-GTGCAC-GTGC-TCATATAATGAGTGTTT-TTAAAAAGTAT-ATCATTTACA-CCC-ATA--TGAATTTTAAGCTAT-GCATTTAATCTCTAT-ACTTATT--GACA-TTTGCACAATGC-AAAAAAT--ATT-------------TTTTTCCACAGAT-TC--TTGGATAATACTTG-GT---ACCAGTAGCA------GCAA-GTCAAAAAAC-CTACAAGACCCAGCTCTAGCAACCACAGAGAATGCCCTCGATCAAACTAGCATACTC--AATTGGAAG-CTGAAGATCAACCCC--CACCATAC-AGGTC-ATC--------------------------------CTATAATAGAAGAA---ATACCGCA-GG-TGTTTTT-CTTATGTTT---GCAAATGTGGAACCTTTGCAAC---ATGTCT-GTATGTTGTT--AGATCTTTTTGTATA-TCAGTGCAAAGTT-CCC-CAG-------TATCGCGTAA-TAT-AA------AAAATAGGAGGAACATGTCCAAC-------------AAAA-ATTTGAAA-TATCGTTATCCAACCAACTGTTTGAG-TC----TAAGACA-T-ATTTA-AGAAGCTTGAC-ATTAATATTCT-AT-TC-TCAAGCtaataatcaattacattacgagtgccccccccttttgttgatttgtatgatgggttgtaaattttatagaattatattgcattaggggtagacctggaggaaaaaaaaaggggggggggggggggggagatacatgcccttataaatcttaaacattttatagatatatccaaatgtagttcaacatttgtgaaaaatggtattttagattatcaatacaaataataatatgttaagaagcagataacattttaaaatggaacggtaaacgcagcataataaaacctaattttttattcagtttttaacttaaacaacattttaaaattccttaacaaaacaattcaacttgataatatgcccgtagtttacccatctgttgcactagctgcagaactgtagcttctgtaaacaaatattgcggacatattgtttctgcagccatcctctgcacaaataaatgcattcatgctacgaaagcgtttacaattgcctgttttctgcggtttttactcagtgaattttgtgataacgtaaactttctctgagtgtgtcagatcatttgacaaacttttctgtgaaaattcgtggtcaaacgggacgattaacaactatacccgttgcaagatcgacatcgtcgctcatgtgtttacatgtagttgacggagttcctgtaaacacgtgtgtgactgttgcccatcaagtgggcggagccgtggaaag
gi|8 : GGGGAGGTGGAGTTACCCATCTTCGACACAGGCCAATCAGAATCG--CGGAAAAATTGTTCACCATGA--C-TCCGTCAAAACA-CCGGATGTGGCCGC-AC---ATCGT-GAAG-GTGTTTAGACG---------TTTTTAACGAAAATTGCTTTGAATTCGCTTGAAAA-TTGTGAAG---AC-CTGCGCCATGG--AGGAAA-TG-TA-AGTGA-CAC-ACGGT-ACC-AGAAAGGATAGTAGGAGTGAGATTAT-CCTTATTTTCAGAACAAgtaacaatttaacaact
gi|8 : GGGGGC---A-CA-TTATGTA-----TGTGTACACTACATGTGTATAAGATCTA------TCTCCA-gggggcacattatgtatgtgtacactacatgtgtataagatctatctccatgtagttgtagtatacaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGAACGGTAAACGCAGCATATAAAACTTTTATTTTTATTCATTTTTTAACTAAGCAACATTTTTAAATTCCTTAACAAAACAATTAAACTCGATAATACCCATCTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTTCTGCAGCCATCTCTGCACAGATAACATGTACACATGTATTCATGCTACGAGAGCGTTTACAATTGCTGTTTCCGCGTTTTTACTCAGTGAAATTTTGTGAACGTAACTTTCTCTGAAGTGTGTCAGATCATTTGACAAACTTTTCTTTGAAAATTCGTGGTCAAACGGGACGATTAACAAGATACCCTGTGCAAGATTGACATCGCTCGCCATGTTGTTTACATGCAAGTTGACGGAGTCTGTAAACACGTGTGTGACGTTGCCATCAGTGGGCGGAGCGTGGAAGA
Unaligned ( gi|9 ): CATCTTGCACAAGTTAACAATTGCTGTTTTCGCATGCCACGAAAGCATCTCGCATAAGTTTACAATTGCTGTTTCGTCCGCGTTTTTACTCATTGAAATCTTGTGAACGTAACCTTCTTTGAAGTGTGTCAGATCCTTGAAAAAACTAACCTGTGAAAATAGTCAAACGAGACGATTAAGAAGGTATCCGATACAAGATCGAAATCGCTCGCCATGTTGTTTACATATAAATTGACAGAGTCTCGAAACACGTGATTGACGTTGCCATCAGTGGGCGGAGCGTGGA
Unaligned ( gi|12 ): CCATCACTATTGTACATGTAGCTGCAGAACTGTAGCTCTTTGTCAAAATATCGCGGGTTCCTACAAAGCTCACTGGAAATCAAATGTACCATGCGGAATAAAACTTAGATGTTTGTTTTGTTTTGGGTTTTTTCCCCTGTGCATT
Unaligned ( gi|14 ): AACGGTAAACGCAGTATATCGCCTATTTTTTAAAAAGTTTTTTTTACTAAACAACAATTTTAAATTCCTTAAAAAACAATTAAATT
Unaligned ( gi|15 ): TACATGTAGCTGCAGAACTGTAGCTCTCT