lowQualScore : 1 1 11 11111111 11111 1 111111111 1111 222222222222222222 3333333333333 222222 11111111 11111 222
lowQualScore : 6 5 1 77 6 6 33 2 55 5 3 88888888 00000 3 7 5 3 2 222222222 3 6 6666 8 44 3 8888888888 000000000000000000 999 555 44 999 44 3 7777 3 6 33 2222222222222 999999 88888 555 3 3 3 7777 3 999999 999999 22222222 3 3 3 77777 2 777 0
lowQualScore : . . . .. . . .. . .. . . ........ ..... . . . . . ......... . . .... . .. . .......... .................. ... ... .. ... .. . .... . . .. ............. ...... ..... ... . . . .... . ...... ...... ........ . . . ..... . ... .
lowQualScore : 0 0 2 77 7 0 55 2 88 7 6 11111111 11111 3 1 5 3 4 888888888 1 2 4444 6 22 1 2222222222 888888888888888888 666 888 66 666 66 3 1111 3 9 88 2222222222222 666666 33333 888 3 3 3 1111 3 666666 666666 77777777 3 3 3 55555 1 333 8
consensus : NNNNTATAGTATTANATATA-GGACT-CCAAAGTGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGG-AGTCC-TATATT---T--G-ACACT----TTCA-CTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAA-AG-TTC--AAATAATA--C-A-----T----ATT-A-----C----------TAT---TATA---A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TCT---T-A-T-T----AA-T------TAGCA----GA-----T--ATG-GCGC-TAGCA-TTCTAATC-----TTTTNAAAAA-GATAAGCTT
Reference ( gi|4 ) : TGTGTGTACTATTATATGTA-AGACT-CCGAAGTGCGATGGTCACGCCAAAGTAGAGTTCCATCGCACTTTGG-AGTCC-TATATT---T--T-ACACC----TTCA-CTTTATGCCTTTAAAG-ATTCTGTTATTAC------CAAGCACGAA-AG-T-C--AAATGATA--C-A-----T----ATT-G-----C----------TAT---TATA---A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTGCT-AC-----------GCTTCTTC------AATT-----TCT---T-A-T-T----AA-T------TAGTT----GA-----T--ATG-GCGC-TAGCA-TTCTAATC-----TTTTAAAAAAGGATAAGCTT
gi|21 : TATAGTGTCAAATATA-GGACT-CCAAAGTGCGA
gi|5 : TATTAAATGTATAGACTACCAAAGCGCGATGGTC--GCCAAAGTGGAGTCACATCGCACTTTGG-AGTCC-TAT-TT---T--G-ACACT----TTCAACTTGATATCTTCATAGCATTCTATTATTAC------CAA-CACGA-------C--AAGT-------------------ATT-A-----C----------TAT---TATA---A--AA--------ATCTGA-TTCATT----AA-AGTATTT--T-AC-------------TTCTTT------AATT-----TAT---T-A-T-T----AAAT------TAGC------AC----T--ATG-GCGC-TAGCA-TTCTAATCTT---TTTTAAAAttttacatgatgccttcaaagattctgttattacca
gi|17 : tctaaatctagctgtgatgATTA-ATATA-GGACT-CCAAAGTGCGATGGcata
gi|20 : cTATATGCA-AGACT-CCAATTTGCGATGGTCATGGCAAAGTAGAGCCCCATTGCACTTTGG-AGTCC-TATATT---T--ttgacactttcacttgatgccttcaaagattctgttattacccagcacaatagttcaaataatacatattactatta
gi|7 : TACATA-GGACT-CCAAAGTGCGATGG
gi|5 : cTA-GGACT-CCAAAGTGCGAT-GTGACTCCACTTTGGCG-ACCATCGCGCTTTGGTAGTCTATACATT---TAAT-ACATC----ctttcacttgatgccttcaaaggttttgttattacatgtaccaagcacaaaagttcaaataatacatattactattatataaaaacaaaaatctgattcattaaagtatttactacacttcctcaatttcttagtaatggccagtaattagcagatatggcgctaacgttctaatcttttttaaaagataagcttg
gi|22 : tctaaatctagctgtCGATGGTCACGCCAAAGTGGAGTCCCATCGGACTTTGG-AATCC-TAttttgacactttcaacttgatatcttcatagcattctattattaccaacacgacaagtattactattataaaaatctgattcattaaagtattttacttctttaatttattattaaattagcactatggcgctagcattctaatcttttttaaaacata
gi|7 : CCATCGCACTTTGG-AGTCC-TATGT-----------ACT----TTCA-CTTGATGCCTTCAAAG-GTTTTGTTATTACATGTACCAAGCACAAA-AG-TTC--AAATAATA--C-A-----T----ATT-A-----C----------TAT---TATATAAA--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------ACTTCCTC------AATT-----TCT---T-A-G-T----AA-TGGCCAGTAATTAGCAGA-----T--ATG-GCGC-TAACG-TTCTAATC-----TTTTTTAAAA-GATAAGCTT
gi|17 : cCCATCGCACTTTGG-AGTCC-TATATTAATT--TGACACT----TTCA-CTTGATGCCTTCAAAG-ATTCTGTTATTAC------CCAGCACAAT-AGTT-C--AAATAATA--C-A-----T----ATT-A-----C----------TAT---TAg
gi|21 : cTCGCACTTTGG-AGTCC-TATATT---T--G-ACACTATATTTTA-CATGATGCCTTCAAAG-ATTCTGTTATTAC------CA
gi|9 : -TATATT---T--G-ACACT----TTCA-CTTGATACCTTCAAAG-ATTCTGTTATCAC------TATGCACGAA-AG-TTC--AAATAATA--C-T-----T----ATT-A-----C----------TAT---TGTA---A--AA-CA--AAAATCTGA-TTCAGT----AA-AGTATTTACT-AC-----------ACTTTTTC------AATT-----TCT---T-A-T-T----AA-T------TAGCA----GA-----T--ATG-GCGC-TAGCA-TTCTATTCGT---TTTTAAAAGA
gi|10 : ttcaagtccaactgtgtgtattacatgta-TATATT---T--G-ACACT----TTCA-CTTGATGCCTTCAAAG-ATTCTGTTCTTAC------CATGCGCGAA-AG-TTC--AAATAATA--C-A-----T----ATT-A-----C----------TAT---AATA---A--AA-CA--AAAATTTGA-TTCATT----AA-AGTATTTACT---------------------------------------T---T-A-T-T----AA-T------TAGCA----GATAAATT--ATG-GCGC-TAGCA-TTCTAATCTTTTTTTTTAAAA---GATAAGCTTtatg
gi|6 : ctctaaatccaactgtgtgtattata-TATATT---G--G-ACACT----TTCA-CTT------------G-AATCTACTAT------------GTACGAA-AG-T-TG-AAAAAATA--C-A-----T----ATT-A-----C----------TAT---TATA---A--AG-CA--AAAATATGA-TTCATTAGTAAA-AGTATTTACT-AC-----------ATTTCTTC------ATTTTTTTATTT---T-A-T-T----AA-T------TAGGA----GA-----TA-ATGCGCGC-TAGCA-TTTTAATC-----TTTgtt
gi|18 : tccctctaaatccatatgtgtgtattatatatatatatatata-TATATT---T--G-ACACT----TGCA-CTTGATGCCTTTACAG-ATTCTGTTATTAC------CATGCACGAA-AGTT-C--AAATAATA--C-A-----T----ATT-A-----C----------attgatagttaagcttg
gi|8 : tataT---T--G-ACACT----CTCA-CTTGACGCCTTCAAAG-ATTCTGTTATTAC------CATCCACGAATAT-T-C--AAATAATA--C-A-----T----AAT-GTAATAC----------TAT---TATT---A--AA--A--GAAATCAGG-TTCATT----AA--GTATTTGCT-AC-----------AATTCTTC------AATT-----TGT---T-A-T-T----AA-T------TAGGA----GA-----T--ATG-GCGC-TAGCA-TTCTAATC-----TTTTTAAAAA-GATAAGCTT
gi|11 : atatcgaactgtaatttttaattttgtaatg--T-ACACT----TTCA-CTTGCTGC-TTCAAAC-GTTCTGTATTTAC------GATGCACAAA-AG-T-T--CAATAATA--C-A-----TTACTATTAG-----C----------TATGACTATA---A--A--CA--AA--TTTG--TTCTTT----AA-AGTATT--CT-GT-----------CTTTCTTC------AAAT-----TCTCTTT-A-T-T----AA-T------CACCA----GA-----A--ATG-GCGC-TAGC--TTCTAATC-----TTTTgtt
gi|14 : -ACACC----TTTA-CTTGATGCCTTCAAAG-ATCATATT-----------CATCCATGAA-TG-TTC--AAATAATAATT-A-----T----ATT-A-----C----------TAT---TATA---A--AAACA--AACA-CTAA-TTCATT----AA-A-TATATGAT-AC--------------------------ATT-----TCT---T-A-T-T----AA-C------TAGTA----GA-----T--AAG-GCGC-CAGCA-GTCTATTT-----TTTTttttttaaataga
gi|13 : attgatgCACT----TTCA-CTTGATGCCTTCAAAG--TTCTGTT-TTAC-------ATGCACAAA-GT-T-C--AATTAATA--C-AGTACCT----ATT-A-----C----------TAT---GATA---A--AA--A--CAAATTTAG-TTCTTT----AA-AGTACTTACT--------------GCCTCT-C------AATT-----TCT---T-A-T-T----AA-T------CACGA----GA-----T--ATG-GCGC-TAGCA-TTCTAATC-----TTTTt
gi|12 : TCTGTTATTAC------CATGCACGAT-AG-TTC--AAATAATA--C-A-----C----ACT-A-----CAATGTACATGTAC---TATC---A--CC-TATCAAAATCTGA-TTCATT----TA-AGCATTTACT-AC-----------ACTTCTTC------AATT-----TCT---T-A-T-T----AA-T------TAGCA----GA-----T--ATG-GCGA-TAGCA-TTCTAATT-----TTTTttt
gi|2 : CACGAA-CG-T-TCAAAATAATA--CCA-----T----ATT-A-----CA---------TATAA-CATA---ATAAA-CA--AAA--TTGACTTCATT----AA-AGTATTTACTAAC-----------G--TCTTT------ACTT-----TCT---T-A-TGTCTAAAA-T------TAGCA----GA-----TACATG-GCGC-T-GCATTTCTAATC-----TTTTTAAAA--TATAAGCTtttttttttaagataagcttgt
gi|16 : a---TATA---A--A--CA--AAAATAAGA-TTCGTT----AACATTATTTATT-ACTACCATGGGTTGGTTCTTCTTTGCAAATT-----TCT---TTACT-T----AA-T------TAGCA----GA-----T--ATT-GCGCCTTGCA-TTCTAATC-----CTTTAAAAGAGTA-AGGCTTatgtttaaataccaattaatatgaaactttagaattgagtatttcggtaagttataggggtacatatttcgagtgtcttttccgagagtaattccggtaaatcacaggtttcagtaatttgtagtttccagaatgaaaggatccattttcttgcaaacaattgtagaaaacgtgttcaggatagttcagatgcgactaattaattcccacgcctgttacataagagatcccaaaggaaaattcgtataagattaaatagaaagcataattttgttcaaaatcccaaggactccacca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TAAAATATTCATATACAGTAAAGCTTGTTTAAAGCAATTGTTATTGGAATGCAACACAAAAATTTAACAATATGTGCTCCGTCACCCACAAAATAAATCAAGCAGAGCGGGAAATATTTTTCTCCTCATAACACATGAAGAAAGGAATATCATGTGTGGATCAAACTAATATTTTATTTGGACATTAAAGGGGAGGTCAATGAGGAGTAAAACAATTTACTTAATATAAAATACACCATCTTTATGTATATGAGAGTTACTGTTCTTGTCTCAAAGTCATTTTCCGGTGTGAAATAGTACAAAAAATCCATGTAATGTATAATATTATTGTTTAGAAAAACAAACTTCTTGCACAAGTATTTACAACTTACAATAATTAACGAAGAATAAATTCAACAGAGCATCTGGCTACGAATTTTGGATTCTGTTTTATTAACTTTAAATTACAATAAATATGTAATGTAATAAAAAAAATTGAGTATTTCGGTAGGTTAGAGGGGTATTTCGGTGTTTTTTGGAGGTATTTCGGTAAATCAAGGGTA
Unaligned ( gi|3 ): AGTAAATACACTATTGACATATGTCATCCTCTACCCTATATGCTGATTAACGAGAGTTACAGTTCTTTTTAAGCCGCTTCCGGTGTGAAATATACAAGAAAATTCCATAATTAGATGTGAAATATACAAGAAAAATTTCATAAATCATTTAATAAATACTTGATTTTATGATGAAACTTCATATGCAAGTACAGTGTAATTAAATTACAATAATATGAAATGTAAAAATCGGGTATTTCAGTAGATTAGGGGGTTATTTTAGTGTTTATTTCTTAGGGTATTTTGGTAATTCAAGGGTATTTAGTTAATGCTATACAGTATACCGAGAACT
Unaligned ( gi|15 ): TGTCATCACCAACAAAAAAGAATTAAGCAGGGCAGGAAATGTTTTCTCCTCATTAACACGAAGAAAGGAATATATCATGTCATTGGATCTTGAAAACTAATATTTTATTTGCACAATTAAAGATTAAAGGGGGAGGTCAATGAAGAGTTAAACAATTT
Unaligned ( gi|19 ): GATATTTAAATTGCAATAATATGAAATAATAAAAACTGGTATTTCGATAGGTTCGGAGGTATTTCAGTGTT
Alignments
lowQualScore : 11 1 1111111111 1111111 2222222222222222 11111111111111 111111111111
lowQualScore : 6 2 1 6 99 3 33 7777 6666 3 3 3 888888 0 2 33 7777777 555 33 5555555555 33 33 5555555 44 33 44 3 6666 3 0 6666666666666666 888888 77777 555 3 6 66666666666666 88888888 3 3 3 555 555555555555 4 5
lowQualScore : . . . . .. . .. .... .... . . . ...... . . .. ....... ... .. .......... .. .. ....... .. .. .. . .... . . ................ ...... ..... ... . . .............. ........ . . . ... ............ . .
lowQualScore : 0 5 0 0 33 3 55 1111 5555 1 1 3 222222 8 9 99 4444444 000 99 4444444444 99 99 4444444 22 99 22 1 5555 1 1 1111111111111111 888888 77777 444 1 2 00000000000000 00000000 1 1 1 444 111111111111 0 0
consensus : NNNNTGTANTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCGC-TAGCA-TTCTAATC---TTTTTTAA--------AA-GATAA-GCTT
Reference ( family-2489 ) : NNNNTATAGTATTANATATA-GGACT-CCAAAGTGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCGC-TAGCA-TTCTAATC---TTTTNAAA--------AA-GATAA-GCTT
gi|10 : TATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTCTTAC------CATGCGCGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--AA--TA-------A--AA-CA--AAAATTTGA-TTCATT----AA-AGTATTTACT------------------------------------------TT-A-T---------T----AATTAGCAGATAAATT--ATG-GCGC-TAGCA-TTCTAATCTTTTTTTTTAA--------AA-GATAA-GCTT
gi|11 : ctctaaatccaactgtgtgtattataACACT----TTC-ACTTGCTGC-TTCAAAC-GTTCTGTATTTAC------GATGCACAAAAGTTC-AA-TAATA--C--------A---T--TAC----------TAT--TAGCTATGACTATA--AA-C----AAATTTG--TTCTTT----AA-AGTATT--CT-GT-----------CTTTCTTC------AAAT-----TCTCTTT-A-T---------T----AATCACCAGA-----A--ATG-GCGC-TAGC--TTCTAATC---TTTTgtt
gi|12 : tTCTGTTATTAC------CATGCACGATAGTTCAAA-TAATA--C-A-----CA---C--TACAATGTACATGTAC--TA--TC-------A--CC-TATCAAAATCTGA-TTCATT----TA-AGCATTTACT-AC-----------ACTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCGA-TAGCA-TTCTAATT---TTTTT---TTTTTTTTAA-GATAA-GCTTttttttaaataga
gi|13 : CACT----TTC-ACTTGATGCCTTCAAAG--TTCTGTT-TTAC-------ATGCAC-AAAGTTCAAT-TAATA--C-AGTACCTA---T--TAC----------TAT--GA--TA-------A--AA--A--CAAATTTAG-TTCTTT----AA-AGTACTTACT--------------GCCTCT-C------AATT-----TC---TT-A-T---------T----AATCACGAGA-----T--ATG-GCGC-TAGCA-TTCTAATC---TTTTgt
gi|14 : ----TGACACC----TTT-ACTTGATGCCTTCAAAG-ATCATATT-----------CATCCATGAATGTTCAAA-TAATAATT-A-----TA---T--TAC----------TAT--TA--TA-------A--AAACA--AACA-CTAA-TTCATT----AA-A-TATATGAT-AC--------------------------ATT-----TC---TT-A-T---------T----AACTAGTAGA-----T--AAG-GCGC-CAGCA-GTCTATTT---TTTTttt
gi|16 : attga--TA--TA-------A--A--CA--AAAATAAGA-TTCGTT----AACATTATTTATT-ACTACCATGGGTTGGTTCTTCTTTGCAAATT-----TC---TTTACT---------T----AATTAGCAGA-----T--ATT-GCGCCTTGCA-TTCTAATC---CTTTAAAA--------GA-G-TAAGGCTTt
gi|17 : CCCATCGCACTTTGGAGTCCTATATTAATTTGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CCAGCACAATAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--
gi|18 : TATATT----TGACACT----TGC-ACTTGATGCCTTTACAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------
gi|2 : tataCACGAACGTTCAAAATAATA--CCA-----TA---T--TACA---------TATAACA--TA-------ATAAA-CA--AAA--TTGACTTCATT----AA-AGTATTTACTAAC-----------G--TCTTT------ACTT-----TC---TT-A-TG--------TCTAAAATTAGCAGA-----TACATG-GCGC-T-GCATTTCTAATC---TTTTT-AA--------AA-TATAA-GCT
gi|20 : aTATATGCA-AGACT-CCAATTTGCGATGGTCATGGCAAAGTAGAGCCCCATTGCACTTTGGAGTCCTATATT----Tatgtttaaataccaattaatatgaaactttagaattgagtatttcggtaagttataggggtacatatttcgagtgtcttttccgagagtaattccggtaaatcacaggtttcagtaatttgtagtttccagaatgaaaggatccattttcttgcaaacaattgtagaaaacgtgttcaggatagttcagatgcgactaattaattcccacgcctgttacataagagatcccaaaggaaaattcgtataagattaaatagaaagcataattttgttcaaaatcccaaggactccacca
gi|21 : TCGCACTTTGGAGTCCTATATT----TGACACTATATTTT-ACATGATGCCTTCAAAG-ATTCTGTTATTAC------CA
gi|22 : CGATGGTCACGCCAAAGTGGAGTCCCATCGGACTTTGGAATCCTA
gi|4 : TGTACTATTATATGTA-AGACT-CCGAAGTGCGATGGTCACGCCAAAGTAGAGTTCCATCGCACTTTGGAGTCCTATATT----TTACACC----TTC-ACTTTATGCCTTTAAAG-ATTCTGTTATTAC------CAAGCACGAAAGT-CAAA-TGATA--C-A-----TA---T--TGC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTGCT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGTTGA-----T--ATG-GCGC-TAGCA-TTCTAATC---TTTTAAAA--------AAGGATAA-GCTT
gi|5 : tgtgGTATTAAATGTATAGACTACCAAAGCGCGATGGTC--GCCAAAGTGGAGTCACATCGCACTTTGGAGTCCTAT-TT----TGACACT----TTCAACTTGATATCTTCATAGCATTCTATTATTAC------CA-ACACGA-----CAA-----------G-----TA---T--TAC----------TAT--TA--T---------------A--AAAATCTGA-TTCATT----AA-AGTATTT--T-A-------------CTTCTTT------AATT-----TA---TT-A-T---------TA---AATTAGCA-C-----T--ATG-GCGC-TAGCA-TTCTAATC---TTTTTTAA--------AA-CATA
gi|6 : tctaaatctagctgtgatTATATT----GGACACT----TTC-ACTTGA------------ATC-------TAC------TATGTACGAAAGTTGAAA-AAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AG-CA--AAAATATGA-TTCATTAGTAAA-AGTATTTACT-AC-----------ATTTCTTC------ATTTTTTTATT---TT-A-T---------T----AATTAGGAGA-----TA-ATGCGCGC-TAGCA-TTTTAATC---TTTATTGA--------TA-GTTAA-GCTT
gi|7 : tccctctaaatccatatgtgtgtattatatatatatatatataCCCATCGCACTTTGGAGTCCTATGT---------ACT----TTC-ACTTGATGCCTTCAAAG-GTTTTGTTATTACATGTACCAAGCACAAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TATAA----A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------ACTTCCTC------AATT-----TC---TT-AGTAATGGCCAGT----AATTAGCAGA-----T--ATG-GCGC-TAACG-TTCTAATC---TTTTTTAA--------AA-GATAA-GCTTg
gi|8 : T----TGACACT----CTC-ACTTGACGCCTTCAAAG-ATTCTGTTATTAC------CATCCACGAATATTCAAA-TAATA--C-A-----TAATGTAATAC----------TAT--TA--TT-------A--AA--A--GAAATCAGG-TTCATT----AA--GTATTTGCT-AC-----------AATTCTTC------AATT-----TG---TT-A-T---------T----AATTAGGAGA-----T--ATG-GCGC-TAGCA-TTCTAATC---TTTTTAAA--------AA-GATAA-GCTTg
gi|9 : atatcgaactgtaatttttaattttgtaatgTATATT----TGACACT----TTC-ACTTGATACCTTCAAAG-ATTCTGTTATCAC------TATGCACGAAAGTTCAAA-TAATA--C-T-----TA---T--TAC----------TAT--TG--TA-------A--AA-CA--AAAATCTGA-TTCAGT----AA-AGTATTTACT-AC-----------ACTTTTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCGC-TAGCA-TTCTATTC---GTTTTTAA--------AA-GATAgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAAATATTCATATACAGTAAAGCTTGTTTAAAGCAATTGTTATTGGAATGCAACACAAAAATTTAACAATATGTGCTCCGTCACCCACAAAATAAATCAAGCAGAGCGGGAAATATTTTTCTCCTCATAACACATGAAGAAAGGAATATCATGTGTGGATCAAACTAATATTTTATTTGGACATTAAAGGGGAGGTCAATGAGGAGTAAAACAATTTACTTAATATAAAATACACCATCTTTATGTATATGAGAGTTACTGTTCTTGTCTCAAAGTCATTTTCCGGTGTGAAATAGTACAAAAAATCCATGTAATGTATAATATTATTGTTTAGAAAAACAAACTTCTTGCACAAGTATTTACAACTTACAATAATTAACGAAGAATAAATTCAACAGAGCATCTGGCTACGAATTTTGGATTCTGTTTTATTAACTTTAAATTACAATAAATATGTAATGTAATAAAAAAAATTGAGTATTTCGGTAGGTTAGAGGGGTATTTCGGTGTTTTTTGGAGGTATTTCGGTAAATCAAGGGTA
Unaligned ( gi|3 ): AGTAAATACACTATTGACATATGTCATCCTCTACCCTATATGCTGATTAACGAGAGTTACAGTTCTTTTTAAGCCGCTTCCGGTGTGAAATATACAAGAAAATTCCATAATTAGATGTGAAATATACAAGAAAAATTTCATAAATCATTTAATAAATACTTGATTTTATGATGAAACTTCATATGCAAGTACAGTGTAATTAAATTACAATAATATGAAATGTAAAAATCGGGTATTTCAGTAGATTAGGGGGTTATTTTAGTGTTTATTTCTTAGGGTATTTTGGTAATTCAAGGGTATTTAGTTAATGCTATACAGTATACCGAGAACT
Unaligned ( gi|15 ): TGTCATCACCAACAAAAAAGAATTAAGCAGGGCAGGAAATGTTTTCTCCTCATTAACACGAAGAAAGGAATATATCATGTCATTGGATCTTGAAAACTAATATTTTATTTGCACAATTAAAGATTAAAGGGGGAGGTCAATGAAGAGTTAAACAATTT
Unaligned ( gi|19 ): GATATTTAAATTGCAATAATATGAAATAATAAAAACTGGTATTTCGATAGGTTCGGAGGTATTTCAGTGTT
Alignments
lowQualScore : 1 1 1111111111 1111111 2222222222222222 11111111111111
lowQualScore : 1 3 3 0 0 33 7777 6666 3 3 3 888888 0 2 33 7777777 555 33 5555555555 33 33 5555555 44 33 44 3 6666 3 0 6666666666666666 888888 77777 555 3 6 66666666666666 88888888 3 3 3 77777 5555 4 4 5
lowQualScore : . . . . . .. .... .... . . . ...... . . .. ....... ... .. .......... .. .. ....... .. .. .. . .... . . ................ ...... ..... ... . . .............. ........ . . . ..... .... . . .
lowQualScore : 0 3 3 7 7 55 1111 5555 1 1 3 222222 8 9 99 4444444 000 99 4444444444 99 99 4444444 22 99 22 1 5555 1 1 1111111111111111 888888 77777 444 1 2 00000000000000 00000000 1 1 1 77777 8888 0 0 0
consensus : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
Reference ( family-2489 ) : NNNNTGTANTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
gi|10 : TATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTCTTAC------CATGCGCGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--AA--TA-------A--AA-CA--AAAATTTGA-TTCATT----AA-AGTATTTACT------------------------------------------TT-A-T---------T----AATTAGCAGATAAATT--ATG-GCG-CTAGCA-TTCTAA-----TCTTTTTTTTTAAAA-GA-TAA-GCTT
gi|11 : ctctaaatccaactgtgtgtattataACACT----TTC-ACTTGCTGC-TTCAAAC-GTTCTGTATTTAC------GATGCACAAAAGTTC-AA-TAATA--C--------A---T--TAC----------TAT--TAGCTATGACTATA--AA-C----AAATTTG--TTCTTT----AA-AGTATT--CT-GT-----------CTTTCTTC------AAAT-----TCTCTTT-A-T---------T----AATCACCAGA-----A--ATG-GCG-CTAGC--TTCTAA-----TC---TTTTTTgtt
gi|12 : tTCTGTTATTAC------CATGCACGATAGTTCAAA-TAATA--C-A-----CA---C--TACAATGTACATGTAC--TA--TC-------A--CC-TATCAAAATCTGA-TTCATT----TA-AGCATTTACT-AC-----------ACTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-ATAGCA-TTCTAATTTTTTT---TTTTTTTTAA-GA-TAA-GCTTttttaaataga
gi|13 : CACT----TTC-ACTTGATGCCTTCAAAG--TTCTGTT-TTAC-------ATGCAC-AAAGTTCAAT-TAATA--C-AGTACCTA---T--TAC----------TAT--GA--TA-------A--AA--A--CAAATTTAG-TTCTTT----AA-AGTACTTACT--------------GCCTCT-C------AATT-----TC---TT-A-T---------T----AATCACGAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTgt
gi|14 : ----TGACACC----TTT-ACTTGATGCCTTCAAAG-ATCATATT-----------CATCCATGAATGTTCAAA-TAATAATT-A-----TA---T--TAC----------TAT--TA--TA-------A--AAACA--AACA-CTAA-TTCATT----AA-A-TATATGAT-AC--------------------------ATT-----TC---TT-A-T---------T----AACTAGTAGA-----T--AAG-GCG-CCAGCA-GTCT-A-----TT---TTTTTTt
gi|16 : attga--TA--TA-------A--A--CA--AAAATAAGA-TTCGTT----AACATTATTTATT-ACTACCATGGGTTGGTTCTTCTTTGCAAATT-----TC---TTTACT---------T----AATTAGCAGA-----T--ATT-GCGCCTTGCA-TTCTAA-----TC-----CTTTAAAA-GAGTAAGGCTT
gi|17 : CCCATCGCACTTTGGAGTCCTATATTAATTTGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CCAGCACAATAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--
gi|18 : TATATT----TGACACT----TGC-ACTTGATGCCTTTACAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------
gi|2 : tataCACGAACGTTCAAAATAATA--CCA-----TA---T--TACA---------TATAACA--TA-------ATAAA-CA--AAA--TTGACTTCATT----AA-AGTATTTACTAAC-----------G--TCTTT------ACTT-----TC---TT-A-TG--------TCTAAAATTAGCAGA-----TACATG-GCG-CT-GCATTTCTAA-----TC----TTTTTAAAA-TA-TAA-GCT
gi|20 : aTATATGCA-AGACT-CCAATTTGCGATGGTCATGGCAAAGTAGAGCCCCATTGCACTTTGGAGTCCTATATT----Tatgtttaaataccaattaatatgaaactttagaattgagtatttcggtaagttataggggtacatatttcgagtgtcttttccgagagtaattccggtaaatcacaggtttcagtaatttgtagtttccagaatgaaaggatccattttcttgcaaacaattgtagaaaacgtgttcaggatagttcagatgcgactaattaattcccacgcctgttacataagagatcccaaaggaaaattcgtataagattaaatagaaagcataattttgttcaaaatcccaaggactccacca
gi|21 : TCGCACTTTGGAGTCCTATATT----TGACACTATATTTT-ACATGATGCCTTCAAAG-ATTCTGTTATTAC------CA
gi|22 : CGATGGTCACGCCAAAGTGGAGTCCCATCGGACTTTGGAATCCTA
gi|4 : TGTACTATTATATGTA-AGACT-CCGAAGTGCGATGGTCACGCCAAAGTAGAGTTCCATCGCACTTTGGAGTCCTATATT----TTACACC----TTC-ACTTTATGCCTTTAAAG-ATTCTGTTATTAC------CAAGCACGAAAG-TCAAA-TGATA--C-A-----TA---T--TGC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTGCT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGTTGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTAAAAAAGGA-TAA-GCTT
gi|5 : tgtgTATTAAATGTATAGACTACCAAAGCGCGATGGTC--GCCAAAGTGGAGTCACATCGCACTTTGGAGTCCTAT-TT----TGACACT----TTCAACTTGATATCTTCATAGCATTCTATTATTAC------CA-ACACGA-----CAA-----------G-----TA---T--TAC----------TAT--TA--T---------------A--AAAATCTGA-TTCATT----AA-AGTATTT--T-A-------------CTTCTTT------AATT-----TA---TT-A-T---------TA---AATTAGCA-C-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-CA-TA
gi|6 : tctaaatctagctgtgatgTATATT----GGACACT----TTC-ACTTGA------------ATC-------TAC------TATGTACGAAAGTTGAAA-AAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AG-CA--AAAATATGA-TTCATTAGTAAA-AGTATTTACT-AC-----------ATTTCTTC------ATTTTTTTATT---TT-A-T---------T----AATTAGGAGA-----TA-ATGCGCG-CTAGCA-TTTTAA-----TC---TTTATTGATA-GT-TAA-GCTT
gi|7 : tccctctaaatccatatgtgtgtattatatatatatatatataCCCATCGCACTTTGGAGTCCTATGT---------ACT----TTC-ACTTGATGCCTTCAAAG-GTTTTGTTATTACATGTACCAAGCACAAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TATAA----A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------ACTTCCTC------AATT-----TC---TT-AGTAATGGCCAGT----AATTAGCAGA-----T--ATG-GCG-CTAACG-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTTg
gi|8 : T----TGACACT----CTC-ACTTGACGCCTTCAAAG-ATTCTGTTATTAC------CATCCACGAATATTCAAA-TAATA--C-A-----TAATGTAATAC----------TAT--TA--TT-------A--AA--A--GAAATCAGG-TTCATT----AA--GTATTTGCT-AC-----------AATTCTTC------AATT-----TG---TT-A-T---------T----AATTAGGAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTAAAAA-GA-TAA-GCTTg
gi|9 : atatcgaactgtaatttttaattttgtaatgTATATT----TGACACT----TTC-ACTTGATACCTTCAAAG-ATTCTGTTATCAC------TATGCACGAAAGTTCAAA-TAATA--C-T-----TA---T--TAC----------TAT--TG--TA-------A--AA-CA--AAAATCTGA-TTCAGT----AA-AGTATTTACT-AC-----------ACTTTTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAT-----TC---GTTTTTAAAA-GA-TAgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAAATATTCATATACAGTAAAGCTTGTTTAAAGCAATTGTTATTGGAATGCAACACAAAAATTTAACAATATGTGCTCCGTCACCCACAAAATAAATCAAGCAGAGCGGGAAATATTTTTCTCCTCATAACACATGAAGAAAGGAATATCATGTGTGGATCAAACTAATATTTTATTTGGACATTAAAGGGGAGGTCAATGAGGAGTAAAACAATTTACTTAATATAAAATACACCATCTTTATGTATATGAGAGTTACTGTTCTTGTCTCAAAGTCATTTTCCGGTGTGAAATAGTACAAAAAATCCATGTAATGTATAATATTATTGTTTAGAAAAACAAACTTCTTGCACAAGTATTTACAACTTACAATAATTAACGAAGAATAAATTCAACAGAGCATCTGGCTACGAATTTTGGATTCTGTTTTATTAACTTTAAATTACAATAAATATGTAATGTAATAAAAAAAATTGAGTATTTCGGTAGGTTAGAGGGGTATTTCGGTGTTTTTTGGAGGTATTTCGGTAAATCAAGGGTA
Unaligned ( gi|3 ): AGTAAATACACTATTGACATATGTCATCCTCTACCCTATATGCTGATTAACGAGAGTTACAGTTCTTTTTAAGCCGCTTCCGGTGTGAAATATACAAGAAAATTCCATAATTAGATGTGAAATATACAAGAAAAATTTCATAAATCATTTAATAAATACTTGATTTTATGATGAAACTTCATATGCAAGTACAGTGTAATTAAATTACAATAATATGAAATGTAAAAATCGGGTATTTCAGTAGATTAGGGGGTTATTTTAGTGTTTATTTCTTAGGGTATTTTGGTAATTCAAGGGTATTTAGTTAATGCTATACAGTATACCGAGAACT
Unaligned ( gi|15 ): TGTCATCACCAACAAAAAAGAATTAAGCAGGGCAGGAAATGTTTTCTCCTCATTAACACGAAGAAAGGAATATATCATGTCATTGGATCTTGAAAACTAATATTTTATTTGCACAATTAAAGATTAAAGGGGGAGGTCAATGAAGAGTTAAACAATTT
Unaligned ( gi|19 ): GATATTTAAATTGCAATAATATGAAATAATAAAAACTGGTATTTCGATAGGTTCGGAGGTATTTCAGTGTT
Alignments
lowQualScore : 1 1 1111111111 1111111 2222222222222222 11111111111111
lowQualScore : 3 3 0 0 33 7777 6666 3 3 3 888888 0 2 33 7777777 555 33 5555555555 33 33 5555555 44 33 44 3 6666 3 0 6666666666666666 888888 77777 555 3 6 66666666666666 88888888 3 3 3 77777 5555 4 4 5
lowQualScore : . . . . .. .... .... . . . ...... . . .. ....... ... .. .......... .. .. ....... .. .. .. . .... . . ................ ...... ..... ... . . .............. ........ . . . ..... .... . . .
lowQualScore : 3 3 7 7 55 1111 5555 1 1 3 222222 8 9 99 4444444 000 99 4444444444 99 99 4444444 22 99 22 1 5555 1 1 1111111111111111 888888 77777 444 1 2 00000000000000 00000000 1 1 1 77777 8888 0 0 0
consensus : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
Reference ( family-2489 ) : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
gi|10 : TATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTCTTAC------CATGCGCGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--AA--TA-------A--AA-CA--AAAATTTGA-TTCATT----AA-AGTATTTACT------------------------------------------TT-A-T---------T----AATTAGCAGATAAATT--ATG-GCG-CTAGCA-TTCTAA-----TCTTTTTTTTTAAAA-GA-TAA-GCTT
gi|11 : ctctaaatccaactgtgtgtattataACACT----TTC-ACTTGCTGC-TTCAAAC-GTTCTGTATTTAC------GATGCACAAAAGTTC-AA-TAATA--C--------A---T--TAC----------TAT--TAGCTATGACTATA--AA-C----AAATTTG--TTCTTT----AA-AGTATT--CT-GT-----------CTTTCTTC------AAAT-----TCTCTTT-A-T---------T----AATCACCAGA-----A--ATG-GCG-CTAGC--TTCTAA-----TC---TTTTTTgtt
gi|12 : tTCTGTTATTAC------CATGCACGATAGTTCAAA-TAATA--C-A-----CA---C--TACAATGTACATGTAC--TA--TC-------A--CC-TATCAAAATCTGA-TTCATT----TA-AGCATTTACT-AC-----------ACTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-ATAGCA-TTCTAATTTTTTT---TTTTTTTTAA-GA-TAA-GCTTttttaaataga
gi|13 : CACT----TTC-ACTTGATGCCTTCAAAG--TTCTGTT-TTAC-------ATGCAC-AAAGTTCAAT-TAATA--C-AGTACCTA---T--TAC----------TAT--GA--TA-------A--AA--A--CAAATTTAG-TTCTTT----AA-AGTACTTACT--------------GCCTCT-C------AATT-----TC---TT-A-T---------T----AATCACGAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTgt
gi|14 : ----TGACACC----TTT-ACTTGATGCCTTCAAAG-ATCATATT-----------CATCCATGAATGTTCAAA-TAATAATT-A-----TA---T--TAC----------TAT--TA--TA-------A--AAACA--AACA-CTAA-TTCATT----AA-A-TATATGAT-AC--------------------------ATT-----TC---TT-A-T---------T----AACTAGTAGA-----T--AAG-GCG-CCAGCA-GTCT-A-----TT---TTTTTTt
gi|16 : attga--TA--TA-------A--A--CA--AAAATAAGA-TTCGTT----AACATTATTTATT-ACTACCATGGGTTGGTTCTTCTTTGCAAATT-----TC---TTTACT---------T----AATTAGCAGA-----T--ATT-GCGCCTTGCA-TTCTAA-----TC-----CTTTAAAA-GAGTAAGGCTT
gi|17 : CCCATCGCACTTTGGAGTCCTATATTAATTTGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CCAGCACAATAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--
gi|18 : TATATT----TGACACT----TGC-ACTTGATGCCTTTACAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------
gi|2 : tataCACGAACGTTCAAAATAATA--CCA-----TA---T--TACA---------TATAACA--TA-------ATAAA-CA--AAA--TTGACTTCATT----AA-AGTATTTACTAAC-----------G--TCTTT------ACTT-----TC---TT-A-TG--------TCTAAAATTAGCAGA-----TACATG-GCG-CT-GCATTTCTAA-----TC----TTTTTAAAA-TA-TAA-GCT
gi|20 : aTATATGCA-AGACT-CCAATTTGCGATGGTCATGGCAAAGTAGAGCCCCATTGCACTTTGGAGTCCTATATT----Tatgtttaaataccaattaatatgaaactttagaattgagtatttcggtaagttataggggtacatatttcgagtgtcttttccgagagtaattccggtaaatcacaggtttcagtaatttgtagtttccagaatgaaaggatccattttcttgcaaacaattgtagaaaacgtgttcaggatagttcagatgcgactaattaattcccacgcctgttacataagagatcccaaaggaaaattcgtataagattaaatagaaagcataattttgttcaaaatcccaaggactccacca
gi|21 : TCGCACTTTGGAGTCCTATATT----TGACACTATATTTT-ACATGATGCCTTCAAAG-ATTCTGTTATTAC------CA
gi|22 : CGATGGTCACGCCAAAGTGGAGTCCCATCGGACTTTGGAATCCTA
gi|4 : TGTACTATTATATGTA-AGACT-CCGAAGTGCGATGGTCACGCCAAAGTAGAGTTCCATCGCACTTTGGAGTCCTATATT----TTACACC----TTC-ACTTTATGCCTTTAAAG-ATTCTGTTATTAC------CAAGCACGAAAG-TCAAA-TGATA--C-A-----TA---T--TGC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTGCT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGTTGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTAAAAAAGGA-TAA-GCTT
gi|5 : tgtgTATTAAATGTATAGACTACCAAAGCGCGATGGTC--GCCAAAGTGGAGTCACATCGCACTTTGGAGTCCTAT-TT----TGACACT----TTCAACTTGATATCTTCATAGCATTCTATTATTAC------CA-ACACGA-----CAA-----------G-----TA---T--TAC----------TAT--TA--T---------------A--AAAATCTGA-TTCATT----AA-AGTATTT--T-A-------------CTTCTTT------AATT-----TA---TT-A-T---------TA---AATTAGCA-C-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-CA-TA
gi|6 : tctaaatctagctgtgatgTATATT----GGACACT----TTC-ACTTGA------------ATC-------TAC------TATGTACGAAAGTTGAAA-AAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AG-CA--AAAATATGA-TTCATTAGTAAA-AGTATTTACT-AC-----------ATTTCTTC------ATTTTTTTATT---TT-A-T---------T----AATTAGGAGA-----TA-ATGCGCG-CTAGCA-TTTTAA-----TC---TTTATTGATA-GT-TAA-GCTT
gi|7 : tccctctaaatccatatgtgtgtattatatatatatatatataCCCATCGCACTTTGGAGTCCTATGT---------ACT----TTC-ACTTGATGCCTTCAAAG-GTTTTGTTATTACATGTACCAAGCACAAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TATAA----A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------ACTTCCTC------AATT-----TC---TT-AGTAATGGCCAGT----AATTAGCAGA-----T--ATG-GCG-CTAACG-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTTg
gi|8 : T----TGACACT----CTC-ACTTGACGCCTTCAAAG-ATTCTGTTATTAC------CATCCACGAATATTCAAA-TAATA--C-A-----TAATGTAATAC----------TAT--TA--TT-------A--AA--A--GAAATCAGG-TTCATT----AA--GTATTTGCT-AC-----------AATTCTTC------AATT-----TG---TT-A-T---------T----AATTAGGAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTAAAAA-GA-TAA-GCTTg
gi|9 : atatcgaactgtaatttttaattttgtaatgTATATT----TGACACT----TTC-ACTTGATACCTTCAAAG-ATTCTGTTATCAC------TATGCACGAAAGTTCAAA-TAATA--C-T-----TA---T--TAC----------TAT--TG--TA-------A--AA-CA--AAAATCTGA-TTCAGT----AA-AGTATTTACT-AC-----------ACTTTTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAT-----TC---GTTTTTAAAA-GA-TAgtt
blockSeqs : T A AC AATT ATAT A C T ATGTAC A AT AGTACC ATG AA AATGTACATG AA GC TGACTAT TA AC TC C AGTA C ACTACCATGGGTTGG TTTGCA TTTTA TCT T C AATGGCCAGT TAC C C T TTTTT T G G G
blockSeqs : . . AC . . . . A . . . CA . . A . . TAA . C . . . . GTCT . . . . G GTCTAA TA . . . . T . . .
blockSeqs : . . . . . A . . . A . . . . . . . T . . . . ACAC . . . . . TA A . . . . T . . .
blockSeqs : . . . . A . . . A . . . . . . . C . . . . AACG . . . . . T T . . . . T . . .
blockSeqs : . . . . A . . . A . . . . . . . C . . . . ACGC . . . . . T T . . . . T . . .
blockSeqs : . . . . A . . . A . . . . . . . C . . . . ACAT . . . . . T T . . . . T . . .
blockSeqs : . . . . A . . . A . . . . . . . C . . . . ACAC . . . . . T T . . . . T . . .
blockSeqs : . . . . A . . . G . . . . . . . C . . . . ACAA . . . . . T T . . . . T . .
blockSeqs : . . . . A . . . A . . . . . . . C . . . . ACAC . . . . . T T . . . . T . .
blockSeqs : . . . . A . . . A . . . . . . . . . . . . GC . . . . . T T . . . . G
blockSeqs : . . . . . . . . A . . . . . . . . . . . . AC . . . . . T T . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . AC . . . . . T T . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : ACAC************ T******* T***
originalCons : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACT-AC-----------GCTTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
finalCons : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACTACAC------------TTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGAT-------ATG-GCG-CTAGCA-TTCTAA-----TCT---TTTTTAAAA-GA-TAA-GCTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAAATATTCATATACAGTAAAGCTTGTTTAAAGCAATTGTTATTGGAATGCAACACAAAAATTTAACAATATGTGCTCCGTCACCCACAAAATAAATCAAGCAGAGCGGGAAATATTTTTCTCCTCATAACACATGAAGAAAGGAATATCATGTGTGGATCAAACTAATATTTTATTTGGACATTAAAGGGGAGGTCAATGAGGAGTAAAACAATTTACTTAATATAAAATACACCATCTTTATGTATATGAGAGTTACTGTTCTTGTCTCAAAGTCATTTTCCGGTGTGAAATAGTACAAAAAATCCATGTAATGTATAATATTATTGTTTAGAAAAACAAACTTCTTGCACAAGTATTTACAACTTACAATAATTAACGAAGAATAAATTCAACAGAGCATCTGGCTACGAATTTTGGATTCTGTTTTATTAACTTTAAATTACAATAAATATGTAATGTAATAAAAAAAATTGAGTATTTCGGTAGGTTAGAGGGGTATTTCGGTGTTTTTTGGAGGTATTTCGGTAAATCAAGGGTA
Unaligned ( gi|3 ): AGTAAATACACTATTGACATATGTCATCCTCTACCCTATATGCTGATTAACGAGAGTTACAGTTCTTTTTAAGCCGCTTCCGGTGTGAAATATACAAGAAAATTCCATAATTAGATGTGAAATATACAAGAAAAATTTCATAAATCATTTAATAAATACTTGATTTTATGATGAAACTTCATATGCAAGTACAGTGTAATTAAATTACAATAATATGAAATGTAAAAATCGGGTATTTCAGTAGATTAGGGGGTTATTTTAGTGTTTATTTCTTAGGGTATTTTGGTAATTCAAGGGTATTTAGTTAATGCTATACAGTATACCGAGAACT
Unaligned ( gi|15 ): TGTCATCACCAACAAAAAAGAATTAAGCAGGGCAGGAAATGTTTTCTCCTCATTAACACGAAGAAAGGAATATATCATGTCATTGGATCTTGAAAACTAATATTTTATTTGCACAATTAAAGATTAAAGGGGGAGGTCAATGAAGAGTTAAACAATTT
Unaligned ( gi|19 ): GATATTTAAATTGCAATAATATGAAATAATAAAAACTGGTATTTCGATAGGTTCGGAGGTATTTCAGTGTT
Alignments
lowQualScore : 1 1 1111111111 1111111 1111111111111 11111111111111
lowQualScore : 3 3 0 0 33 7777 6666 3 3 3 888888 0 2 33 7777777 555 33 5555555555 33 33 5555555 44 33 44 3 6666 3 0 8888888888888 888888 77777 555 3 6 66666666666666 88888888 3 3 3 77777 5555 4 4 5
lowQualScore : . . . . .. .... .... . . . ...... . . .. ....... ... .. .......... .. .. ....... .. .. .. . .... . . ............. ...... ..... ... . . .............. ........ . . . ..... .... . . .
lowQualScore : 3 3 7 7 55 1111 5555 1 1 3 222222 8 9 99 4444444 000 99 4444444444 99 99 4444444 22 99 22 1 5555 1 1 2222222222222 888888 77777 444 1 2 00000000000000 00000000 1 1 1 77777 8888 0 0 0
consensus : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACTAC-AC----------TTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
Reference ( family-2489 ) : NNNNTGTACTATTATATGTA-AGACT-CCGAAGCGCGATGGTCACGCCAAAGTGGAGTCCCATCGCACTTTGGAGTCCTATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACTAC-AC----------TTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTT
gi|10 : TATATT----TGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTCTTAC------CATGCGCGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--AA--TA-------A--AA-CA--AAAATTTGA-TTCATT----AA-AGTATTTACT-----------------------------------------TT-A-T---------T----AATTAGCAGATAAATT--ATG-GCG-CTAGCA-TTCTAA-----TCTTTTTTTTTAAAA-GA-TAA-GCTT
gi|11 : ctctaaatccaactgtgtgtattataACACT----TTC-ACTTGCTGC-TTCAAAC-GTTCTGTATTTAC------GATGCACAAAAGTTC-AA-TAATA--C--------A---T--TAC----------TAT--TAGCTATGACTATA--AA-C----AAATTTG--TTCTTT----AA-AGTATT--CTGT-CT----------TTCTTC------AAAT-----TCTCTTT-A-T---------T----AATCACCAGA-----A--ATG-GCG-CTAGC--TTCTAA-----TC---TTTTTTgtt
gi|12 : tTCTGTTATTAC------CATGCACGATAGTTCAAA-TAATA--C-A-----CA---C--TACAATGTACATGTAC--TA--TC-------A--CC-TATCAAAATCTGA-TTCATT----TA-AGCATTTACTAC-AC----------TTCTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-ATAGCA-TTCTAATTTTTTT---TTTTTTTTAA-GA-TAA-GCTTttttaaataga
gi|13 : CACT----TTC-ACTTGATGCCTTCAAAG--TTCTGTT-TTAC-------ATGCAC-AAAGTTCAAT-TAATA--C-AGTACCTA---T--TAC----------TAT--GA--TA-------A--AA--A--CAAATTTAG-TTCTTT----AA-AGTACTTACTGC-------------CTCT-C------AATT-----TC---TT-A-T---------T----AATCACGAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTgt
gi|14 : ----TGACACC----TTT-ACTTGATGCCTTCAAAG-ATCATATT-----------CATCCATGAATGTTCAAA-TAATAATT-A-----TA---T--TAC----------TAT--TA--TA-------A--AAACA--AACA-CTAA-TTCATT----AA-A-TATATGATAC-A-------------------------TT-----TC---TT-A-T---------T----AACTAGTAGA-----T--AAG-GCG-CCAGCA-GTCT-A-----TT---TTTTTTt
gi|16 : attga--TA--TA-------A--A--CA--AAAATAAGA-TTCGTT----AACATTATTTATTACTACCATGGGTTGGTTCTTCTTTGCAAATT-----TC---TTTACT---------T----AATTAGCAGA-----T--ATT-GCGCCTTGCA-TTCTAA-----TC-----CTTTAAAA-GAGTAAGGCTT
gi|17 : CCCATCGCACTTTGGAGTCCTATATTAATTTGACACT----TTC-ACTTGATGCCTTCAAAG-ATTCTGTTATTAC------CCAGCACAATAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--
gi|18 : TATATT----TGACACT----TGC-ACTTGATGCCTTTACAG-ATTCTGTTATTAC------CATGCACGAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------
gi|2 : tataCACGAACGTTCAAAATAATA--CCA-----TA---T--TACA---------TATAACA--TA-------ATAAA-CA--AAA--TTGACTTCATT----AA-AGTATTTACTA--AC----------GTCTTT------ACTT-----TC---TT-A-TG--------TCTAAAATTAGCAGA-----TACATG-GCG-CT-GCATTTCTAA-----TC----TTTTTAAAA-TA-TAA-GCT
gi|20 : aTATATGCA-AGACT-CCAATTTGCGATGGTCATGGCAAAGTAGAGCCCCATTGCACTTTGGAGTCCTATATT----Tatgtttaaataccaattaatatgaaactttagaattgagtatttcggtaagttataggggtacatatttcgagtgtcttttccgagagtaattccggtaaatcacaggtttcagtaatttgtagtttccagaatgaaaggatccattttcttgcaaacaattgtagaaaacgtgttcaggatagttcagatgcgactaattaattcccacgcctgttacataagagatcccaaaggaaaattcgtataagattaaatagaaagcataattttgttcaaaatcccaaggactccacca
gi|21 : TCGCACTTTGGAGTCCTATATT----TGACACTATATTTT-ACATGATGCCTTCAAAG-ATTCTGTTATTAC------CA
gi|22 : CGATGGTCACGCCAAAGTGGAGTCCCATCGGACTTTGGAATCCTA
gi|4 : TGTACTATTATATGTA-AGACT-CCGAAGTGCGATGGTCACGCCAAAGTAGAGTTCCATCGCACTTTGGAGTCCTATATT----TTACACC----TTC-ACTTTATGCCTTTAAAG-ATTCTGTTATTAC------CAAGCACGAAAG-TCAAA-TGATA--C-A-----TA---T--TGC----------TAT--TA--TA-------A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTGCTAC-GC----------TTCTTC------AATT-----TC---TT-A-T---------T----AATTAGTTGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTAAAAAAGGA-TAA-GCTT
gi|5 : tgtgTATTAAATGTATAGACTACCAAAGCGCGATGGTC--GCCAAAGTGGAGTCACATCGCACTTTGGAGTCCTAT-TT----TGACACT----TTCAACTTGATATCTTCATAGCATTCTATTATTAC------CA-ACACGA-----CAA-----------G-----TA---T--TAC----------TAT--TA--T---------------A--AAAATCTGA-TTCATT----AA-AGTATTT----T-AC----------TTCTTT------AATT-----TA---TT-A-T---------TA---AATTAGCA-C-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTTAAAA-CA-TA
gi|6 : tctaaatctagctgtgatgTATATT----GGACACT----TTC-ACTTGA------------ATC-------TAC------TATGTACGAAAGTTGAAA-AAATA--C-A-----TA---T--TAC----------TAT--TA--TA-------A--AG-CA--AAAATATGA-TTCATTAGTAAA-AGTATTTACTAC-AT----------TTCTTC------ATTTTTTTATT---TT-A-T---------T----AATTAGGAGA-----TA-ATGCGCG-CTAGCA-TTTTAA-----TC---TTTATTGATA-GT-TAA-GCTT
gi|7 : tccctctaaatccatatgtgtgtattatatatatatatatataCCCATCGCACTTTGGAGTCCTATGT---------ACT----TTC-ACTTGATGCCTTCAAAG-GTTTTGTTATTACATGTACCAAGCACAAAAGTTCAAA-TAATA--C-A-----TA---T--TAC----------TAT--TA--TATAA----A--AA-CA--AAAATCTGA-TTCATT----AA-AGTATTTACTAC-AC----------TTCCTC------AATT-----TC---TT-AGTAATGGCCAGT----AATTAGCAGA-----T--ATG-GCG-CTAACG-TTCTAA-----TC---TTTTTTAAAA-GA-TAA-GCTTg
gi|8 : T----TGACACT----CTC-ACTTGACGCCTTCAAAG-ATTCTGTTATTAC------CATCCACGAATATTCAAA-TAATA--C-A-----TAATGTAATAC----------TAT--TA--TT-------A--AA--A--GAAATCAGG-TTCATT----AA--GTATTTGCTAC-AA----------TTCTTC------AATT-----TG---TT-A-T---------T----AATTAGGAGA-----T--ATG-GCG-CTAGCA-TTCTAA-----TC---TTTTTAAAAA-GA-TAA-GCTTg
gi|9 : atatcgaactgtaatttttaattttgtaatgTATATT----TGACACT----TTC-ACTTGATACCTTCAAAG-ATTCTGTTATCAC------TATGCACGAAAGTTCAAA-TAATA--C-T-----TA---T--TAC----------TAT--TG--TA-------A--AA-CA--AAAATCTGA-TTCAGT----AA-AGTATTTACTAC-AC----------TTTTTC------AATT-----TC---TT-A-T---------T----AATTAGCAGA-----T--ATG-GCG-CTAGCA-TTCTAT-----TC---GTTTTTAAAA-GA-TAgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAAATATTCATATACAGTAAAGCTTGTTTAAAGCAATTGTTATTGGAATGCAACACAAAAATTTAACAATATGTGCTCCGTCACCCACAAAATAAATCAAGCAGAGCGGGAAATATTTTTCTCCTCATAACACATGAAGAAAGGAATATCATGTGTGGATCAAACTAATATTTTATTTGGACATTAAAGGGGAGGTCAATGAGGAGTAAAACAATTTACTTAATATAAAATACACCATCTTTATGTATATGAGAGTTACTGTTCTTGTCTCAAAGTCATTTTCCGGTGTGAAATAGTACAAAAAATCCATGTAATGTATAATATTATTGTTTAGAAAAACAAACTTCTTGCACAAGTATTTACAACTTACAATAATTAACGAAGAATAAATTCAACAGAGCATCTGGCTACGAATTTTGGATTCTGTTTTATTAACTTTAAATTACAATAAATATGTAATGTAATAAAAAAAATTGAGTATTTCGGTAGGTTAGAGGGGTATTTCGGTGTTTTTTGGAGGTATTTCGGTAAATCAAGGGTA
Unaligned ( gi|3 ): AGTAAATACACTATTGACATATGTCATCCTCTACCCTATATGCTGATTAACGAGAGTTACAGTTCTTTTTAAGCCGCTTCCGGTGTGAAATATACAAGAAAATTCCATAATTAGATGTGAAATATACAAGAAAAATTTCATAAATCATTTAATAAATACTTGATTTTATGATGAAACTTCATATGCAAGTACAGTGTAATTAAATTACAATAATATGAAATGTAAAAATCGGGTATTTCAGTAGATTAGGGGGTTATTTTAGTGTTTATTTCTTAGGGTATTTTGGTAATTCAAGGGTATTTAGTTAATGCTATACAGTATACCGAGAACT
Unaligned ( gi|15 ): TGTCATCACCAACAAAAAAGAATTAAGCAGGGCAGGAAATGTTTTCTCCTCATTAACACGAAGAAAGGAATATATCATGTCATTGGATCTTGAAAACTAATATTTTATTTGCACAATTAAAGATTAAAGGGGGAGGTCAATGAAGAGTTAAACAATTT
Unaligned ( gi|19 ): GATATTTAAATTGCAATAATATGAAATAATAAAAACTGGTATTTCGATAGGTTCGGAGGTATTTCAGTGTT