lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 1111 1111 555 1 333 111111 33333333333333333333 111 11 3333 1 1 1111111 11 3333 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 111 555555555555555555555555555 1 22 111 1111 222 11111 2222 1 11 1 777777777777 11 1 7777777777777777777777777777777777777
lowQualScore : 2222 2222 777 3 11 77 77 3 3 66 4 888 8 000000 55 7 22222222222222222222 222 00 3333 6 3 7 8 4 4 9999999 11 66 1111 0 5 5 0 4 4 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 5 5 5 77 0 333 111111111111111111111111111 9 5 3 4 4 777 8888 4 55 22 0 55 4 0 99999999 4 55 555 5 5 5555 5 5 4 66 0 111 5 5 66 0 4 22222 6 5 0000 5 2 5 3 5 5 11 5 3 888 3 5 6 66 5 4 4 44 4 4 2 4 5 5 000000000000 00 44 44 3 7 3 3 3 3 3 3 3 5 4 4 3333333333333333333333333333333333333 3
lowQualScore : .... .... ... . .. .. .. . . .. . ... . ...... .. . .................... ... .. .... . . . . . . ....... .. .. .... . . . . . . .............................................................................................. . . . . .. . ... ........................... . . . . . ... .... . .. .. . .. . . ........ . .. ... . . .... . . . .. . ... . . .. . . ..... . . .... . . . . . . .. . . ... . . . .. . . . .. . . . . . . ............ .. .. .. . . . . . . . . . . . . ..................................... .
lowQualScore : 1111 6666 999 9 66 99 99 7 2 11 4 000 9 555555 00 4 77777777777777777777 111 00 7777 0 7 9 9 4 4 3333333 99 99 8888 1 0 0 1 4 4 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 0 0 0 88 4 888 888888888888888888888888888 7 0 6 0 0 000 5555 0 55 22 8 55 0 5 88888888 0 55 666 0 0 6666 0 0 4 11 2 444 0 0 99 1 2 55555 5 0 6666 0 5 0 5 0 0 99 0 8 888 2 0 5 99 0 4 4 66 4 4 4 8 0 0 000000000000 11 66 22 1 5 1 5 1 1 1 1 1 0 0 0 4444444444444444444444444444444444444 5
consensus : NCGCACCT----AAACGG--TATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACA--TG-TGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCA-------TAT----ACA---ACA-A-AC--GTA--TTAGAAAAATAATTGCATTATTT-ATGA-GAGATAA-AC---G-C-TTCAAA--TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTTTG-TTA-A-AT-CAATTT---GAT------TATG---------G-TC---TTATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT--G-TATAAA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGGTTCA-GAATTTTA-TGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CATTT-TT-C--ATAATTGAA-TTTA---ATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATNAATTAGTTT-GGAAC-CTTGTTTCTA---TAACGCTATGCGGAAANTTCA--CT--G-TTGATA-ATCCTG-AC-A-TT-AAATATATTTCACAATCAAATTCCTA-A-TATGATAAGA---------ANTTTC--TT-CACTCTT---------ACGCACGCGTTTTT
Reference ( gi|4 ) : GCGCACCT----AAACAG--TATA--TGCCCAATTAC--AC--AGCACGTTTTGAACA--TG-TGTTTTAAA-ATATTTAATAGGC------ATATA--CAGGAGGCA-------TGT----GTA---ACA-A-AC--GTA--T-AAAAAAATAACTGCAATATTT-ATGA-GAGATAA-AC---G-T-TTCAAA--TTAG--GTAGTCGTCTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTTTG-TTA-A-AG-CAATTT---GAT------TATA---------G-TC---ATATTTTCTTCTAATTGAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT--G-AATAAA--A-TTAAGTCG-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGGTTCC-GAATTTTA-TGAAAA-T--CTTTCTAAGCT-----TTAGGGACA-AT----A-TTGTAATG-CATAT-TT-C--ATAATTGAA-TATA---ATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAATTT-GGAAC-CTTGTTTCTATAGTAACGCAATGCGGAAAATTCA--CT--G-TTAATA-ATCCTG-AC-A-TT-ACATATATTTCACAATCAAATTCCTA-A-TATGATAAGA---------A--------------CTT---------GCGCACGCATTTTT
gi|1 : CGCACCT----AAACTGCCTAAA--GGCCTGATTAC--AC--AGCAAGTTATGAATA--TA-TGTGT-AAA-ATATTTAAAATGC------ATATA--CGGGAGGCA-------TAT----ACA---ACA-A-AC--GTA--TTAGAAAAATAATTACAGTATTC-ATGA-GAAACAA-AC---G-C-TTCAAA--TTAG--GTAGTGGACTCT-A-AACACATTTATTT-GC-TAAT-------AT-------------------------G-TTGGGGT-------------AA----A--------T-----------T----------GTATG-TTA-A-AT-CAATTT---CAT------TATG---------A-TA---TTATTTTCTTCTA-TTCAAAAATGG--TGAG-GAGA---GAAATT----AA-GTT--G-TATAAA--A-TTAATTCA-CA-A--A-ATA--TGCCCA-T-A----TT-TA-CTG-AAGT--CG-TTTTCAGGGTTCA-GAATTTTAATGAAAA-T--CTTTCCA-GTT-----TTAGGGGCA-AT----A-TTGTAATG-CATTT-TT-C--ATAATTTAA-TTTA---ATCTTA-ATTGCATGT-CCT--TGTATATTTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATGAATTACTTT-GGAAC-CCTGCTTCTA----AA-GCTATGCGGAAAAATCA--CT--GTTTGATA-ATCCTG-AC-A-TT-AGATACATTTCACAATCAAATTCTTA-A-TATGATAAGATTCTCTTCCACT------------CTT---------ACGCACACGTTCTT
gi|2 : ttaCACATTT----AAAAGG--CATAAAGGCCCGACTGC--AC--ATTAAGTTTTGAACA--TG-TGTGT-AAA-ATATTCAATAAGC------ATATATACGGGAGGCA-------TAT----ACA---ACA-C-AC--GTG--TTAGAAAAA---------------ATGA-GAGATAA-AC-----C-TTCAAA--TTAT--ATAGAGGACTCA-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------CCCGCATAGATG-TT----T-------------TTGTAAA--------T-----------T----------CCTTT-TTA-A-AT-AAATTT---GAT------T------------------------TTCTTCTATTTCAAAAACGG-GCGAG-G-GA---TAAATT----AA-GTC--G-TATAAA----TTCAGTCA-CA-A--A-TTA--TG---A-T-A----TT-TG-TGG-AAGG--TGATTTTCGGGGTTCA-GAATTTTA-TGAAAA-T--CTTTCTACGCT-----TTAGGGGCA-AT----A-TTGTAATG-CATTT-TT-C--ATAATTGAA-TTTA---ATCTTA-ATTACACGTACTT--TGTATGTCTC-CCCTC-TTG-ATAATTT-GT-TAA-CATCTTAAATAAATTAGTTT-CAAAC-CTTGTTTC-----TAACGCTATGCGGAAATCTCA--TT--G-TTGATA-ATCAAGAAC-ATTT-AAATATATTTCACAATCAAATTCCTA-A-TATGATAAGAC--------AGTTTCCATTCCACTCTT---------ACGCACGCGTTTttttctttttgtcttttttgttttcttttctgtcattttaat
gi|10 : taCGCACCT----AAACGG--TATA-------AA----------GGCCCGGTT---ACA--TG-TGTGT-AAA-ATATTTAATAGGCCTAGGCATAAA--CGGGAGGCA-------TTT----ACA---ACA-C-AC--GTA--TTAGAAAAATAATTGCATTATTT-ATGA-GAGACAA-AC---G-C-TTCAAA--TTAG--GTAGAGGACTCT-A-AACACATTTATTA-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------gttttgtttgtttgtttttgtttgt
gi|5 : taCGCACCT----AA-C-G--TATAAAGGCCCGAT-AC--AC--AGCA-ATTT---AGA--TGGTGTGTTAAACATATCTAATA-------------A--C----GGCA--------------ATA---ACC-ACAC---TAATT-AGAAAAATAA-TGCA-TATTT-AT-A-GA-ATAA-AC---A-CCTTCAAAA-TTAG--ATAG-----------AGGAC--TTAAT---C-AAAT-------AT-------------------------G-CT------------------AC----A--------T-----------T----------CT--GCTTA-A-AT-CAATTTT--GAT-------AT----------G-TCTCTATATTTTTTTCTATTCCAAAAACGATAT------GA---AAAATT----AA-TTT--GTTAT-AA--A-TCAAATAA-CA-T--A-A-A--TG---A-T-AAACTTC-CA-TGG-A-----TAATTTTC-GGGTT---AAATTCTA-TTAATA-TTCTTTTTTAAG-T-----TGAGCG-CA-AT----ACTTGTAATGACATCTCTT-C--ATAA-TGAA-TTTA---ATC--ACATTACA--TACTT----TATGTCTC-GCCTC-CCGAAGAAGTCTGTATAACCATCTTAACTAAATT-ATT----AAC-CT--TTTCT----TTACGCATAGCGGAAAA-TCA--CT--G-TTTAAA-AT-CTG--C-A-TT-AAATATA-TTCAAAAAGAAATTTCTACA-TATgatgttggcgtaaatac
gi|16 : taGCAC-T----GAACGG--TATAAAGGCCCGATTAC--AC--AGCAAGTGTTGAACA--TG-TGTGT-AAA-ATATTTAATAGGC------ATACA--CGGGAGGCA-------TAT----ACA---A-A-C-AC--GTAT-T-AGAAAAATAATTGCATTAATT-ATAA-GAGATGA-AA---G-C-TTCagaagtattccttcctctttaaccacgggttttgttttttggttgtgttttttgttttatattttccttttttt
gi|18 : CACCTTTAGAAACGG--TATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACAAATG-TGT---AAA-ATATTTAATAGGC------ATGTA--CGGGATGCATATACATTGT----ACA---ACA-A-AC--GTAT-T-AGAAAAA
gi|7 : CCT----AAACGA--TATAAAGGGTCGATTACTGACTAAGCATGTTTTGAAC------TGTTGTAAATATTTTTAA--GGC------ATATA--TTAGAGGCA-------TATAAATGTA---TCACA-AC--GTAGTT-AGAAATATAA-TGCACTTTTTTATGAAGAGATAA-ACTTTG-G-TTCAA---TTAT--GT-GTGGTC-CT-ACGAC-CATTGATTT-GCCAAAT-------TT-C-T----------C----------GGTT----C-------------AT----AGATTGGAATAAA--------T----------CTTTG-CTA-A-AATCAAATT---GAT------TATG---------GGTC---TTATTTTCTT-TAATTCTAAAACGG-GCGAG-G-GA---GAAATT----AA-GTTTGG-GATATA--A-ATAAGTCC-T-------ATA--TG---A-TAA----TT-TA-AGT-AAGG--TGATTTTCGGAGTTTCAGAATTTT
gi|25 : cttTTTTCAATA--TG-TGTGT-AAA-ATATTTACTAGGC------ATGTA--TAA--------------AT----ATA---ACA-A-AT--ATA--TCAGAAAAATAATTGCA
gi|3 : --TG-TGTAT-AAA-ATATTTAATAGGC------ATATA--TA----------------------CA---ATA-A-AC--GTA--TTAGAAAAATAATTGCATTGTTT-ATGA-GAGATTT-AC---GCT-TTCAAAAACCAGATGTAGTGGACTCT-A-AACACATTTATTTTGC-AAATTTCTTCGTT-CAT----------C----------A-TT----CTATCCATTGTATGAT----G--------TGTGGCGTAAAGT----------CTTTG-TTACATAT-CAATTTCTAGATATTGAATATG---------G-CT---TTATTTTCTTCTAATTCAAAAACGG-GTGAG-G-GG---GGAAT-----AA-GTT--G-TATAAA--A-TAAAGTCG-CAAT--ATATA--TA---A-T-A----TT--A-TGT-AAGGAGTGATTTTCGGGGTTG--GAATTTTA-T-AAAA-T--CCTTCTAAGTTAAGTTTTAGTGACA-AT----A-TTGTAATG-CATTT-TT-C--ATAATTGAA-TTTA---ATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-A-------------------TAAATTAATTAGTTT-GGAGC-ATTGTTTTTAC-----CACTATACGGAAAATTAG--CT--G-TTGATA-ATCCTG-AC-A-TT-AAATATATTTCACAGTCAGATTCTTA-A-TATGATAAGA---------AAATTTATTTCCACTCTT---------ACGCACGCGTTTTt
gi|9 : ATAGGC------ATATA--CGGGAGGCA-------TAT----ACATGCACA-ACACAGGTA--TTAGAAAAATAATTGCATTATTT-ATGA-AAGATAA-AC---G-C-TTCAAA--TTAG--GTAGAGGACTCT-A-AACACATTTATTT-GC-AATT-------TT-C-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTTTG-TTA-A-AT-CAATTT---GAT------TATG---------G-TC---TTATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT--G-TATAAA--A-TTAAATCA-CA-T--A-ATA--TG---ccccttattttttctttgtttttgccattttagcct
gi|8 : ATAGGC------ATATA--CGGGAGGCA-------TAT----ACATGCACA-ACACAGGTA--TTAGAAAAATAATTGCATTATTTTATGA-AAGATAACAC---G-C-TTCAAA--TTAG--GTAGAGGACTCTAA-AACACA-TTATTT-GC-AATT-------TTCC-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTTTG-TTA-A-AT-CAA-TT---GAT------TATG---------G-TC---TTATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT--G-TATAAA--A-TTAAATCA-CA-T--A-ATA--T
gi|19 : TATTT-GC-AAAT-------TT-C-TAAAACATAGAT----------G-TT----G-------------GTGTTAA--------T-----------T----------CTTCT-TTT-A-AA-CAATTT---GAT------TATACTCTTTTTTT-TC---TTTTTTTCTTCTAATTCAAAGGAGG-G
gi|12 : ATCTTTTTTTAGTTCATATA-GG-GTGAGAG-GATCTGAAATT----AAAGTT--G-TATAGATAA-TTTGATCAACA-TGGA-ATAGATG---A-T-AA---TC-TAATGGCAAGG--TGATTTTCAGGGTTCA-GAA-TTTA-AGAAAGTT--CTTTCCAAGTT-----TTAGGGGCA-ATA---A-TTGTAATG-CATTT-TT-CA-ATAATTGAA-TTTA---ATGTTT-ATTACAT
gi|26 : AAAACGG-ATGAT-G-AA---GAAATT----AA-GTT--G---T-----A-TCAAATCA-CA-T--A-CTA--TGATCA-T-A----TT-TA-TGG-GAGG--TGA
gi|6 : GG-GCGAG-G-GA---GACATTTTAAAA-GT---G-TATAAA--AATTATGTCA-C--T--A-ATA--TG---AAT-A----TTGTA-TGG-AAGA--TGATTT-CGGGGTTCA-GAATTT-A-TGAAAA-T--CTTTCTAAACT-----TTAGGGGCATATTCTTA-TT-TAATG-CATTT-TTTC--ATAATTGAA-TTTA---ATCTTA-ATTACATGTATTTGGTGTATATCTC-GCCTC-TTG-ATAAGTC-AT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTATTCC-----TAATGCTATGCGGAAATTTCA--CT--G-TTGATA-ATCCTG-AC-A-TT-AAATATATTTCACAATCAAATTCCTA-ATTATGCTAGAA---------ATTTCCTTCCACTT-CTT---------ACGCACGCATTTCT
gi|13 : G-AAGG--TGATTTTCGGGTTTCA-AAACCTTG-TGGAAA-T--ATGTCCAAGCT-----TTGTGGACA-ATC---A-CT-TAAT---ATAA-TT-CTAATAATT----TACATCGATCTTG-ATTACATGTTCTT--TGTATATCTC-GATTT-TTG-TTAGTTC-GT-CAA-CATCTTAGATCATTTATGTT-GGtttttttctttcttttctctttttttctcat
gi|11 : -TGCAAA-T--CTTTCTAAATT-----TTAGGGGCA--T----A-TGGTAATA-CATTT-TT-C--ATAATTGAATTTTA---ATC-TA-ATTA-ATGT-CTT--TTTATATTTCGGCCTCTTTG-ATAAGT--GT-TAA-CATCTTAAAATAATTAGTTTCGGAACGCTAATTTATATTGCGTC----TGCGGAAAATTCAACTT--G-TTGATA-AT-CTG-GC-A-TT-AAATATAT
gi|27 : tcACATGTACTT--TGTATGTCTC-GCATC-TTA-ATAAGTC-GT-TAA-CATCTT
gi|22 : TC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATAAATTT-GAAAT-CTTGTTTC-----TAACGCTATGTGGAAA------------------A-ATCCTG-AC-A-TT-AAATATATTT
gi|14 : AAA-CTTGTTTCTA-----ATGCTATGTGGAAATTTCA--CT--C-TTGATATATC-TG-AC-A-TT-AAAT---------AATCAAATTCCTT-A-TATAACACGA---------t
gi|23 : TGTTTCTA-----ATGCTATGTGGAA--TTCA--CTTCA-TTGATA-AT-----AT-A-TCGACATAAAT---A-AATCAAATTCCTT-A-TAcagtttccttccactattatggtacttgtatgtagttttactttgattacatgttactgt
gi|15 : ATGCGGGAATTTCA--CT--G-TTGATA-ATCATT-AC-A-TT-GAATATATTCAACAATCGAATTCCCT-A-TGTAATGAGA---------ATGTTTCCTTTCACTCTT---------ACGCACGCGGTTTTacacacgaaagtttcctt
gi|20 : tTTAA--CT--G-TTGATA-ACCCTG-ACAA-TT----TGTATCTCAGGATCAAAGTTCTA-A-CATAAAAGGA---------A--------------TTT---------aatttggttttgttgctgtagtttttgttttgt
gi|17 : tCA--CT--G-TTGATA-ATACTG-AC-A-TT-AAATATATTTCAAAAAGAAATTCCTA-A-T-TGATAAGA---------AGTTTC---------CTTTCCTCTTTAACGCACGTGTTTTTtccttccaccctttactcgcgctttcatttacat
gi|24 : T--G-TTGATA-ATCCTG-GC-A-TT-AAATATATgttttttgtttgtttgtttttgttttggtattt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): CGTTAATACGTATTTTCACAATCAAAGTTCCTTAATTGCTAGAAAGAAAGTTTCTTCCACTCTACGTTTCTTTTTTCGTTTCTGTCTTTTTCTTTCTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1111111 111 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111 22222222222 111 1111 11111 1111 2222222 1111111 2222222
lowQualScore : 0000 66 66 0 0 4 8 999999 44 0 0000000 111 88888 111 99 3 2 3 4 4 4 777 4 777 4 66 1 4 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 4 4 4 222 222222 55555555555 777 4 3 3 3 666 7777 3 7777 3 8888 0 3 6666 3 55 444 4 4 3333 4 4 4 55 4 1 4 4 66 2 11111 4 8888 4 1 4 4 4 4 4 1 4 4 66 4 4 4 4 4 4 1 4 4 4 8888888 3 666 55 44 2 5 0 2 2 2 2 0 2 1 3 3 33 3 1 1 555 4444444 9999999 1 3 99
lowQualScore : .... .. .. . . . . ...... .. . ....... ... ..... ... .. . . . . . . ... . ... . .. . . . . . .............................................................................................. . . . . . ... ...... ........... ... . . . . ... .... . .... . .... . . .... . .. ... . . .... . . . .. . . . . .. . ..... . .... . . . . . . . . . . .. . . . . . . . . . . ....... . ... .. .. . . . . . . . . . . . . .. . . . ... ....... ....... . . ..
lowQualScore : 6666 99 99 2 8 0 0 666666 66 4 8888888 777 33333 111 22 3 1 6 0 0 0 000 0 000 4 11 0 4 4 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 4 4 4 4 222 888888 11111111111 888 9 3 6 6 444 7777 6 7777 6 5555 4 6 5555 6 00 000 4 4 9999 4 4 0 55 4 1 4 4 11 7 11111 4 3333 4 1 4 4 4 4 4 9 4 8 11 4 0 0 0 0 0 0 7 4 4 9999999 6 444 00 22 9 7 7 9 7 7 7 7 9 5 1 1 88 1 5 4 444 3333333 2222222 2 3 22
consensus : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTATA---ACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-AC-A-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A--GTTTCC--TT--CAC-TCTT--ACGCACGCGTTTTT
Reference ( family-2453 ) : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATNAATTAGTTT-GGAAC-CTTGTTTCTATA---ACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-AC-A-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A--NTTTC---TT--CAC-TCTT--ACGCACGCGTTTTT
gi|1 : CGCACCT----AAACTGCCTAAAGGCCTGATTAC--AC--AGCAAGTTATGAATATATGTGT-AAA-ATATTTAAAATGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTACA-GTATTC-ATGA-GAAACAA-AC---GC-TTC---AAA-TTAG--GTAGTGGACTCT-A-AACACATTTATTT-GC-TAAT-------AT-------------------------G-TTGGGGT-------------AA----A--------T-----------T----------GTA-TG-TTA-A-A-TCAATTT---CAT------TATG---------A-TAT---TATTTTCTTCTA-TTCAAAAAT-G-GTGAG-GAGA---GAAATT----AA-GTT----GTATA-AA--A-TTAATTCA-CA-A--A-ATA--TGCCCA-T-A----TT-TA-CTG-AAGT--CG-TTTTCAGGG-TTCAGAATTTTAATGAAAA-T--CTTTCC-AGTT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTTAA-TTTAATCTTA-ATTGCATGT-CCT--TGTATATTTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATGAATTACTTT-GGAAC-CCTGCTTCTA-A---A-GCTAT-GCGGAA---AAATCA--CTGTTTGATA-ATCCTG-AC-A-TTAG-ATACATTT-CACAATCAAA-TTCT-TA-A-TATGAT---AAG---A--TTCTC---TTC-CAC-TCTT--ACGCACACGTTCTT
gi|10 : ttaCGCACCT----AAACGGTATAAAGGCCCGGTTAC--A------------------TGTGTGT-AAA-ATATTTAATAGGCCTAGGCATAAA--CGGGAGGCATT-------TACA---A-----CA-C-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGACAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTA-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------ttttctttttgtcttttttgttttcttttctgtcattttaat
gi|11 : taTGCAAA-T--CTTTCTAAATT-----TTAGGGGCA--T----A-TGGTAATA-CAT-TTTT-C-ATAATTGAATTTTAATC-TA-ATTA-ATGT-CTT--TTTATATTTCGGCCTCTTTG-ATAAGT--GT-TAA-CATCTTAAAATAATTAGTTTCGGAACGCTAATTTATATT---GCG-TCT-GCGGAA---AATTCAACTTG-TTGATA-AT-CTG-GC-A-TTAA-ATATATgatgttggcgtaaatac
gi|12 : tcATCTTTTTTTAGTTCATATA-GG-GTGAGAG-GATCTGAAATT----AAAGTT----GTATA-GATAA-TTTGATCAACA-TGGA-ATAGATG---A-T-AA---TC-TAATGGCAAGG--TGATTTTCAGGG-TTCAGAA-TTT-AAGAAAGTT--CTTTCCAAGTT-----TTAGGGGCA-ATA---A-TTGTAATG-CAT-TTTT-CAATAATTGAA-TTTAATGTTT-ATTACAT
gi|13 : G-AAGG--TGATTTTCGGGT-TTCAAAACCTT-GTGGAAA-T--ATGTCCAAGCT-----TTGTGGACA-ATC---A-CT-TAATA-TAA-TTCT-A-ATAATTTAC-ATCGATCTTG-ATTACATGTTCTT--TGTATATCTC-GATTT-TTG-TTAGTTC-GT-CAA-CATCTTAGATCATTTATGTT-GG
gi|14 : AAA-CTTGTTTCTA-----ATGCTAT-GTGGAA---ATTTCA--CTC-TTGATATATC-TG-AC-A-TTAA-AT----------AATCAAA-TTCC-TT-A-TATAAC---ACG-ACA--GTTTCCT-TC--CAC-TATT--ATG
gi|15 : TAT-GCGGGA---ATTTCA--CTG-TTGATA-ATCATT-AC-A-TTGA-ATATATTC-AACAATCGAA-TTCC-CT-A-TGTAAT---GAG-A-AT-GTTTCCT-TT--CAC-TCTT--ACGCACGCGGTTTTgtacttgtatgtagttttactttgattacatgttactgt
gi|16 : GCAC-T----GAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTGTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATACA--CGGGAGGCATA-------TACA---A------A-C-AC--GTA-TTAGAAAAATAATTGCA-TTAATT-ATAA-GAGATGA-AA---GC-TTC---aatttggttttgttgctgtagtttttgttttgt
gi|17 : CA--CTG-TTGATA-ATACTG-AC-A-TTAA-ATATATTT-CAAAAAGAAA-TTCC-TA-A-T-TGAT---AAG-A-A--GTTTCCT-TT--C-C-TCTTTAACGCACGTGTTTTT
gi|18 : CACCTTTAGAAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACAAATGTGT-AAA-ATATTTAATAGGC------ATGTA--CGGGATGCATATACATTGTACA---A-----CA-A-AC--GTA-TTAGAAAAAgttttttgtttgtttgtttttgttttggtattt
gi|19 : TATTT-GC-AAAT-------TT-C-TAAAACATAGAT----------G-TT----G-------------GTGTTAA--------T-----------T----------CTTCTT-TTA-A-A--CAATTT---GAT------TATACTCTTTTTTT-TCT---TTTTTTCTTCTAATTCAAAGGAGG-G
gi|2 : CACATTT----AAAAGGCATAAAGGCCCGACTGC--AC--ATTAAGTTTTGAACATGTGTGT-AAA-ATATTCAATAAGC------ATATATACGGGAGGCATA-------TACA---A-----CA-C-AC--GTG-TTAGAAAAA----------------ATGA-GAGATAA-AC----C-TTC---AAA-TTAT--ATAGAGGACTCA-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------CCCGCATAGATG-TT----T-------------TTGTAAA--------T-----------T----------CCT-TT-TTA-A-A-TAAATTT---GAT------T------------------------TTCTTCTATTTCAAAAACGG-GCGAG-G-GA---TAAATT----AA-GTC----GTATA-AA----TTCAGTCA-CA-A--A-TTA--TG---A-T-A----TT-TG-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTACGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACACGTACTT--TGTATGTCTC-CCCTC-TTG-ATAATTT-GT-TAA-CATCTTAAATAAATTAGTTT-CAAAC-CTTGTTTC--TA---ACGCTAT-GCGGAA---ATCTCA--TTG-TTGATA-ATCAAGAAC-ATTTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-ACA--GTTTCCATTC--CAC-TCTT--ACGCACGCGTTT
gi|20 : taTTAA--CTG-TTGATA-ACCCTG-ACAA-TT----TGTATCT-CAGGATCAAA-GTTC-TA-A-CATAAA---AGG-A-A--TTTTCCT-TC--CAC-CCTT---TACTCGCGCTTTgttttgtttgtttgtttttgtttgt
gi|21 : tC-G-TTAATACGTATTTTCACAATCAAAGTTCCTTA-A-T-TGCTAGAAAGAA-A--GTTTC---TTC-CAC-TC-T--ACGcatttacat
gi|22 : TC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATAAATTT-GAAAT-CTTGTTTC--TA---ACGCTAT-GTGGAA---A----------------A-ATCCTG-AC-A-TTAA-ATATATTT-tttcttttttcgtttctgtctttttctttctt
gi|23 : TGTTTCTA-----ATGCTAT-GTGGAATTCACTTCA--TTG-ATAATATATC--G-AC-A-T-AA-ATA---------AATCAAA-TTCC-TT-A-TAACAC---ACGAA-A--GTTTC---CT--t
gi|24 : TG-TTGATA-ATCCTG-GC-A-TTAA-ATATA----------------TCC-T-------------------A--GTTCC---TTC-CAC-TCTT--ACGCACACGTTTTTt
gi|25 : TTTTCAATATGTGTGT-AAA-ATATTTACTAGGC------ATGTA---------TAAA-------TATA---A-----CA-A-AT--ATA-TCAGAAAAATAATTGCA-Tcttttcttttttctcattttagc
gi|26 : AAAACGG-ATGAT-G-AA---GAAATT----AA-GTT----GTATC-AA--A------TCA-CA-T--A-CTA--TGATCA-T-A----TT-TA-TGG-GAGG--TGA
gi|27 : ACATGTACTT--TGTATGTCTC-GCATC-TTA-ATAAGTC-GT-TAA-CATCTT
gi|3 : TGTGTAT-AAA-ATATTTAATAGGC------ATATA--------------------TACA---A-----TA-A-AC--GTA-TTAGAAAAATAATTGCA-TTGTTT-ATGA-GAGATTT-AC---GC-TTTCAAAAA-CCAGATGTAGTGGACTCT-A-AACACATTTATTTTGC-AAATTTCTTCGTT-CAT----------C----------A-TT----CTATCCATTGTATGAT----G--------TGTGGCGTAAAGT----------CTT-TG-TTACATA-TCAATTTCTAGATATTGAATATG---------G-CTT---TATTTTCTTCTAATTCAAAAACGG-GTGAG-G-GG---GGAAT-----AA-GTT----GTATA-AA--A-TAAAGTCG-CAAT--ATATA--TA---A-T-A----TT--A-TGT-AAGGAGTGATTTTCGGGG-TT-GGAATTTT-AT-AAAA-T--CCTTCTAAGTTAAGTTTTAGTGACA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-A-------------------TAAATTAATTAGTTT-GGAGC-ATTGTTTTTAC-----CACTAT-ACGGAA---AATTAG--CTG-TTGATA-ATCCTG-AC-A-TTAA-ATATATTT-CACAGTCAGA-TTCT-TA-A-TATGAT---AAGAA-A--ATTTA---TTTCCAC-TCTT--ACGCACGCGTTTT
gi|4 : CGCACCT----AAACAGTATA--TGCCCAATTAC--AC--AGCACGTTTTGAACATGTGTTTTAAA-ATATTTAATAGGC------ATATA--CAGGAGGCATG-------TGTA---A-----CA-A-AC--GTA-T-AAAAAAATAACTGCA-ATATTT-ATGA-GAGATAA-AC---GT-TTC---AAA-TTAG--GTAGTCGTCTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-GCAATTT---GAT------TATA---------G-TCA---TATTTTCTTCTAATTGAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GAATA-AA--A-TTAAGTCG-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCCGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGACA-AT----A-TTGTAATG-CAT-ATTT-C-ATAATTGAA-TATAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAATTT-GGAAC-CTTGTTTCTATAGTAACGCAAT-GCGGAA---AATTCA--CTG-TTAATA-ATCCTG-AC-A-TTAC-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-------------------CTT--GCGCACGCATTTTTccccttattttttctttgtttttgccattttagcct
gi|5 : gCGCACCT----AA-CG-TATAAAGGCCCGAT-AC--AC--AGCAA-TTTAGATGGTGTGT-T-AAACATATCTAATA-------------A--CGGCA---ATA--------ACC---A-----CA----C--TAA-TTAGAAAAATAAT-GCA-T-ATTT-AT-A-GA-ATAA-AC---ACCTTC---AAAATTAG--ATAGAGGACT-T-A-A-----------T--C-AAAT-------AT-------------------------G-CT------------------AC----A--------T-----------T----------CT---GCTTA-A-A-TCAATTTT--GAT-------ATG-----------TCTCTATATTTTTTTCTATTCCAAAAACGATAT------GA---AAAATT----AA-TTT----GT-TATAA--A-TCAAATAA-CA-T--A-A-A--TG---A-T-AAACTTC-CA-TGG-A-----TAATTTTC-GGG-TT--AAATTCT-ATTAATA-TTCTTTTTTAAG-------TTGAGCGCA-AT----ACTTGTAATGACATCTCTT-C-ATAA-TGAA-TTTAATC--ACATTACA--TACTT----TATGTCTC-GCCTC-CCGAAGAAGTCTGTATAACCATCTTAACTAAATTA-TT----AAC-CT--TTTCT-TT---ACGC-ATAGCGGAA---AA-TCA--CTG-TTTAAA-AT-CTG--C-A-TTAA-ATATA-TT-CAAAAAGAAA-TTTC-TACA-TAT-------AG-A-AGTATTCC---TT--C-C-TCTTTAAC-CACGGGTTTT
gi|6 : taGG-GCGAG-G-GA---GACATTTTAAAA-GT-----GTATA-AA--AATTATGTCA-C--T--A-ATA--TG---AAT-A----TTGTA-TGG-AAGA--TGATTT-CGGGG-TTCAGAATTT--ATGAAAA-T--CTTTCTAAACT-----TTAGGGGCATATTCTTA-TT-TAATG-CAT-TTTTTC-ATAATTGAA-TTTAATCTTA-ATTACATGTATTTGGTGTATATCTC-GCCTC-TTG-ATAAGTC-AT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTATTCCTA-----ATGCTAT-GCGGAA---ATTTCA--CTG-TTGATA-ATCCTG-AC-A-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-ATTATGCT---AGA-A-A--TTTCC---TTC-CACTTCTT--ACGCACGCATTTCTgttttttggttgtgttttttgttttatattttccttttttt
gi|7 : CCT----AAACGATATAAAGGGTCGATTACTGACTAAGCATGTTTTGAAC-TGT-TGT-AAATATTTTTAA--GGC------ATATA--TTAGAGGCATA-------TA-A---ATGTATCACA-AC--GTAGTTAGAAATATAAT-GCACTTTTTT-ATGAAGAGATAA-ACTTTGG-TTC---AA--TTAT--GT-GTGGTC-CT-ACGAC-CATTGATTT-GCCAAAT-------TT-C-T----------C----------GGTT----C-------------AT----AGATTGGAATAAA--------T----------CTT-TG-CTA-A-AATCAAATT---GAT------TATG---------GGTCT---TATTTTCTT-TAATTCTAAAACGG-GCGAG-G-GA---GAAATT----AA-GTTTGGGATATA-AA-----TAAGTCC-T-------ATA--TG---A-TAA----TT-TA-AGT-AAGG--TGATTTTCGGAGTTTCAGAATTTT-tttttttctttcttttctctttttttctcat
gi|8 : cttATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTTTATGA-AAGATAACAC---GC-TTC---AAA-TTAG--GTAGAGGACTCTAA-AACACA-TTATTT-GC-AATT-------TTCC-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTT-TG-TTA-A-A-TCAA-TT---GAT------TATG---------G-TCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--T
gi|9 : ATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-AAGATAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTT-GC-AATT-------TT-C-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--TG---
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1111111 111 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111 22222222222 111 1111 11111 1111 2222222 111 1
lowQualScore : 0000 66 66 0 0 4 8 999999 44 0 0000000 111 88888 111 99 3 2 3 4 4 4 777 4 777 4 66 1 4 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 4 4 4 222 222222 55555555555 777 4 3 3 3 666 7777 3 7777 3 8888 0 3 6666 3 55 444 4 4 3333 4 4 4 55 4 1 4 4 66 2 11111 4 8888 4 1 4 4 4 4 4 1 4 4 66 4 4 4 4 4 4 1 4 4 4 8888888 3 666 55 44 2 5 0 2 5 2 0 2 1 3 3 33 3 1 1 555 222 33 3 77 2 3 99
lowQualScore : .... .. .. . . . . ...... .. . ....... ... ..... ... .. . . . . . . ... . ... . .. . . . . . .............................................................................................. . . . . . ... ...... ........... ... . . . . ... .... . .... . .... . . .... . .. ... . . .... . . . .. . . . . .. . ..... . .... . . . . . . . . . . .. . . . . . . . . . . ....... . ... .. .. . . . . . . . . . . . .. . . . ... ... .. . .. . . ..
lowQualScore : 6666 99 99 2 8 0 0 666666 66 4 8888888 777 33333 111 22 3 1 6 0 0 0 000 0 000 4 11 0 4 4 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 4 4 4 4 222 888888 11111111111 888 9 3 6 6 444 7777 6 7777 6 5555 4 6 5555 6 00 000 4 4 9999 4 4 0 55 4 1 4 4 11 7 11111 4 3333 4 1 4 4 4 4 4 9 4 8 11 4 0 0 0 0 0 1 7 4 4 9999999 6 444 00 22 9 7 7 9 3 7 7 9 5 1 1 88 1 5 4 444 000 22 1 33 3 3 22
consensus : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTA---TAACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
Reference ( family-2453 ) : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTA---TAACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
gi|1 : CGCACCT----AAACTGCCTAAAGGCCTGATTAC--AC--AGCAAGTTATGAATATATGTGT-AAA-ATATTTAAAATGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTACA-GTATTC-ATGA-GAAACAA-AC---GC-TTC---AAA-TTAG--GTAGTGGACTCT-A-AACACATTTATTT-GC-TAAT-------AT-------------------------G-TTGGGGT-------------AA----A--------T-----------T----------GTA-TG-TTA-A-A-TCAATTT---CAT------TATG---------A-TAT---TATTTTCTTCTA-TTCAAAAAT-G-GTGAG-GAGA---GAAATT----AA-GTT----GTATA-AA--A-TTAATTCA-CA-A--A-ATA--TGCCCA-T-A----TT-TA-CTG-AAGT--CG-TTTTCAGGG-TTCAGAATTTTAATGAAAA-T--CTTTCC-AGTT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTTAA-TTTAATCTTA-ATTGCATGT-CCT--TGTATATTTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATGAATTACTTT-GGAAC-CCTGCTTCTA----AA-GCTAT-GCGGAA---AAATCA--CTGTTTGATA-ATCCTG-ACA-TTAG-ATACATTT-CACAATCAAA-TTCT-TA-A-TATGAT---AAG---A-TT-CTCT--TC-CAC-TCTT--ACGCACACGTTCTT
gi|10 : ttaCGCACCT----AAACGGTATAAAGGCCCGGTTAC--A------------------TGTGTGT-AAA-ATATTTAATAGGCCTAGGCATAAA--CGGGAGGCATT-------TACA---A-----CA-C-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGACAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTA-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------ttttctttttgtcttttttgttttcttttctgtcattttaat
gi|11 : taTGCAAA-T--CTTTCTAAATT-----TTAGGGGCA--T----A-TGGTAATA-CAT-TTTT-C-ATAATTGAATTTTAATC-TA-ATTA-ATGT-CTT--TTTATATTTCGGCCTCTTTG-ATAAGT--GT-TAA-CATCTTAAAATAATTAGTTTCGGAACGCTAATTTATA---TTGCG-TCT-GCGGAA---AATTCAACTTG-TTGATA-AT-CTG-GCA-TTAA-ATATATgatgttggcgtaaatac
gi|12 : tcATCTTTTTTTAGTTCATATA-GG-GTGAGAG-GATCTGAAATT----AAAGTT----GTATA-GATAA-TTTGATCAACA-TGGA-ATAGATG---A-T-AA---TC-TAATGGCAAGG--TGATTTTCAGGG-TTCAGAA-TTT-AAGAAAGTT--CTTTCCAAGTT-----TTAGGGGCA-ATA---A-TTGTAATG-CAT-TTTT-CAATAATTGAA-TTTAATGTTT-ATTACAT
gi|13 : G-AAGG--TGATTTTCGGGT-TTCAAAACCTT-GTGGAAA-T--ATGTCCAAGCT-----TTGTGGACA-ATC---A-CT-TAATA-TAA-TTCT-A-ATAATTTAC-ATCGATCTTG-ATTACATGTTCTT--TGTATATCTC-GATTT-TTG-TTAGTTC-GT-CAA-CATCTTAGATCATTTATGTT-GG
gi|14 : AAA-CTTGTTTCTA-----ATGCTAT-GTGGAA---ATTTCA--CTC-TTGATATATC-TG-ACA-TTAA-AT----------AATCAAA-TTCC-TT-A-TATAAC---ACG-ACA-GT-TTCC--TTCCAC-TATT--ATG
gi|15 : TAT-GCGGGA---ATTTCA--CTG-TTGATA-ATCATT-ACA-TTGA-ATATATTC-AACAATCGAA-TTCC-CT-A-TGTAAT---GAG-A-ATGT-TTCCT-TT-CAC-TCTT--ACGCACGCGGTTTTgtacttgtatgtagttttactttgattacatgttactgt
gi|16 : GCAC-T----GAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTGTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATACA--CGGGAGGCATA-------TACA---A------A-C-AC--GTA-TTAGAAAAATAATTGCA-TTAATT-ATAA-GAGATGA-AA---GC-TTC---aatttggttttgttgctgtagtttttgttttgt
gi|17 : CA--CTG-TTGATA-ATACTG-ACA-TTAA-ATATATTT-CAAAAAGAAA-TTCC-TA-A-T-TGAT---AAG-A-A-GT-TTCC--TT-TCC-TCTTTAACGCACGTGTTTTT
gi|18 : CACCTTTAGAAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACAAATGTGT-AAA-ATATTTAATAGGC------ATGTA--CGGGATGCATATACATTGTACA---A-----CA-A-AC--GTA-TTAGAAAAAgttttttgtttgtttgtttttgttttggtattt
gi|19 : TATTT-GC-AAAT-------TT-C-TAAAACATAGAT----------G-TT----G-------------GTGTTAA--------T-----------T----------CTTCTT-TTA-A-A--CAATTT---GAT------TATACTCTTTTTTT-TCT---TTTTTTCTTCTAATTCAAAGGAGG-G
gi|2 : CACATTT----AAAAGGCATAAAGGCCCGACTGC--AC--ATTAAGTTTTGAACATGTGTGT-AAA-ATATTCAATAAGC------ATATATACGGGAGGCATA-------TACA---A-----CA-C-AC--GTG-TTAGAAAAA----------------ATGA-GAGATAA-AC----C-TTC---AAA-TTAT--ATAGAGGACTCA-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------CCCGCATAGATG-TT----T-------------TTGTAAA--------T-----------T----------CCT-TT-TTA-A-A-TAAATTT---GAT------T------------------------TTCTTCTATTTCAAAAACGG-GCGAG-G-GA---TAAATT----AA-GTC----GTATA-AA----TTCAGTCA-CA-A--A-TTA--TG---A-T-A----TT-TG-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTACGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACACGTACTT--TGTATGTCTC-CCCTC-TTG-ATAATTT-GT-TAA-CATCTTAAATAAATTAGTTT-CAAAC-CTTGTTTC-----TAACGCTAT-GCGGAA---ATCTCA--TTG-TTGATA-ATCAAGAACATTTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-ACA-GT-TTCCATTC-CAC-TCTT--ACGCACGCGTTT
gi|20 : taTTAA--CTG-TTGATA-ACCCTG-ACAATT----TGTATCT-CAGGATCAAA-GTTC-TA-A-CATAAA---AGG-A-A-TT-TTCC--TTCCAC-CCTT---TACTCGCGCTTTgttttgtttgtttgtttttgtttgt
gi|21 : tCG-TTAATACGTATTTTCACAATCAAAGTTCCTTA-A-T-TGCTAGAAAGAA-A-GT-TTCT--TC-CAC-TC-T--ACGcatttacat
gi|22 : TC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATAAATTT-GAAAT-CTTGTTTC-----TAACGCTAT-GTGGAA---A----------------A-ATCCTG-ACA-TTAA-ATATATTT-tttcttttttcgtttctgtctttttctttctt
gi|23 : TGTTTCTA-----ATGCTAT-GTGGAATTCACTTCA--TTG-ATAATATATC--G-ACA-T-AA-ATA---------AATCAAA-TTCC-TT-A-TAACAC---ACGAA-A-GT-TTCC--TT-t
gi|24 : TG-TTGATA-ATCCTG-GCA-TTAA-ATATA----------------TCC-T-------------------A-GT-TCCT--TC-CAC-TCTT--ACGCACACGTTTTT
gi|25 : TTTTCAATATGTGTGT-AAA-ATATTTACTAGGC------ATGTA---------TAAA-------TATA---A-----CA-A-AT--ATA-TCAGAAAAATAATTGCA-Tcttttcttttttctcattttagc
gi|26 : AAAACGG-ATGAT-G-AA---GAAATT----AA-GTT----GTATC-AA--A------TCA-CA-T--A-CTA--TGATCA-T-A----TT-TA-TGG-GAGG--TGA
gi|27 : ACATGTACTT--TGTATGTCTC-GCATC-TTA-ATAAGTC-GT-TAA-CATCTT
gi|3 : TGTGTAT-AAA-ATATTTAATAGGC------ATATA--------------------TACA---A-----TA-A-AC--GTA-TTAGAAAAATAATTGCA-TTGTTT-ATGA-GAGATTT-AC---GC-TTTCAAAAA-CCAGATGTAGTGGACTCT-A-AACACATTTATTTTGC-AAATTTCTTCGTT-CAT----------C----------A-TT----CTATCCATTGTATGAT----G--------TGTGGCGTAAAGT----------CTT-TG-TTACATA-TCAATTTCTAGATATTGAATATG---------G-CTT---TATTTTCTTCTAATTCAAAAACGG-GTGAG-G-GG---GGAAT-----AA-GTT----GTATA-AA--A-TAAAGTCG-CAAT--ATATA--TA---A-T-A----TT--A-TGT-AAGGAGTGATTTTCGGGG-TT-GGAATTTT-AT-AAAA-T--CCTTCTAAGTTAAGTTTTAGTGACA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-A-------------------TAAATTAATTAGTTT-GGAGC-ATTGTTTTTA---C--CACTAT-ACGGAA---AATTAG--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAGTCAGA-TTCT-TA-A-TATGAT---AAGAA-A-AT-TTAT--TTCCAC-TCTT--ACGCACGCGTTTT
gi|4 : CGCACCT----AAACAGTATA--TGCCCAATTAC--AC--AGCACGTTTTGAACATGTGTTTTAAA-ATATTTAATAGGC------ATATA--CAGGAGGCATG-------TGTA---A-----CA-A-AC--GTA-T-AAAAAAATAACTGCA-ATATTT-ATGA-GAGATAA-AC---GT-TTC---AAA-TTAG--GTAGTCGTCTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-GCAATTT---GAT------TATA---------G-TCA---TATTTTCTTCTAATTGAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GAATA-AA--A-TTAAGTCG-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCCGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGACA-AT----A-TTGTAATG-CAT-ATTT-C-ATAATTGAA-TATAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAATTT-GGAAC-CTTGTTTCTATAGTAACGCAAT-GCGGAA---AATTCA--CTG-TTAATA-ATCCTG-ACA-TTAC-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A------------------CTT--GCGCACGCATTTTTccccttattttttctttgtttttgccattttagcct
gi|5 : gCGCACCT----AA-CG-TATAAAGGCCCGAT-AC--AC--AGCAA-TTTAGATGGTGTGT-T-AAACATATCTAATA-------------A--CGGCA---ATA--------ACC---A-----CA----C--TAA-TTAGAAAAATAAT-GCA-T-ATTT-AT-A-GA-ATAA-AC---ACCTTC---AAAATTAG--ATAGAGGACT-T-A-A-----------T--C-AAAT-------AT-------------------------G-CT------------------AC----A--------T-----------T----------CT---GCTTA-A-A-TCAATTTT--GAT-------ATG-----------TCTCTATATTTTTTTCTATTCCAAAAACGATAT------GA---AAAATT----AA-TTT----GT-TATAA--A-TCAAATAA-CA-T--A-A-A--TG---A-T-AAACTTC-CA-TGG-A-----TAATTTTC-GGG-TT--AAATTCT-ATTAATA-TTCTTTTTTAAG-------TTGAGCGCA-AT----ACTTGTAATGACATCTCTT-C-ATAA-TGAA-TTTAATC--ACATTACA--TACTT----TATGTCTC-GCCTC-CCGAAGAAGTCTGTATAACCATCTTAACTAAATTA-TT----AAC-CT--TTTCT----TTACGC-ATAGCGGAA---AA-TCA--CTG-TTTAAA-AT-CTG--CA-TTAA-ATATA-TT-CAAAAAGAAA-TTTC-TACA-TAT-------AG-A-A-GTATTCC--TT-C-C-TCTTTAAC-CACGGGTTTT
gi|6 : taGG-GCGAG-G-GA---GACATTTTAAAA-GT-----GTATA-AA--AATTATGTCA-C--T--A-ATA--TG---AAT-A----TTGTA-TGG-AAGA--TGATTT-CGGGG-TTCAGAATTT--ATGAAAA-T--CTTTCTAAACT-----TTAGGGGCATATTCTTA-TT-TAATG-CAT-TTTTTC-ATAATTGAA-TTTAATCTTA-ATTACATGTATTTGGTGTATATCTC-GCCTC-TTG-ATAAGTC-AT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTATTCCTA-----ATGCTAT-GCGGAA---ATTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-ATTATGCT----AG-A-A-AT-TTCC--TTCCACTTCTT--ACGCACGCATTTCTgttttttggttgtgttttttgttttatattttccttttttt
gi|7 : CCT----AAACGATATAAAGGGTCGATTACTGACTAAGCATGTTTTGAAC-TGT-TGT-AAATATTTTTAA--GGC------ATATA--TTAGAGGCATA-------TA-A---ATGTATCACA-AC--GTAGTTAGAAATATAAT-GCACTTTTTT-ATGAAGAGATAA-ACTTTGG-TTC---AA--TTAT--GT-GTGGTC-CT-ACGAC-CATTGATTT-GCCAAAT-------TT-C-T----------C----------GGTT----C-------------AT----AGATTGGAATAAA--------T----------CTT-TG-CTA-A-AATCAAATT---GAT------TATG---------GGTCT---TATTTTCTT-TAATTCTAAAACGG-GCGAG-G-GA---GAAATT----AA-GTTTGGGATATA-AA-----TAAGTCC-T-------ATA--TG---A-TAA----TT-TA-AGT-AAGG--TGATTTTCGGAGTTTCAGAATTTT-tttttttctttcttttctctttttttctcat
gi|8 : cttATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTTTATGA-AAGATAACAC---GC-TTC---AAA-TTAG--GTAGAGGACTCTAA-AACACA-TTATTT-GC-AATT-------TTCC-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTT-TG-TTA-A-A-TCAA-TT---GAT------TATG---------G-TCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--T
gi|9 : ATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-AAGATAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTT-GC-AATT-------TT-C-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--TG---
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1111111 111 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111 22222222222 111 1111 11111 1111 2222222 111 1
lowQualScore : 0000 66 66 0 0 4 8 999999 44 0 0000000 111 88888 111 99 3 2 3 4 4 4 777 4 777 4 66 1 4 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 4 4 4 222 222222 55555555555 777 4 3 3 3 666 7777 3 7777 3 8888 0 3 6666 3 55 444 4 4 3333 4 4 4 55 4 1 4 4 66 2 11111 4 8888 4 1 4 4 4 4 4 1 4 4 66 4 4 4 4 4 4 1 4 4 4 8888888 3 666 55 44 2 5 0 2 5 2 0 2 1 3 3 33 3 1 1 555 222 33 3 77 2 3 99
lowQualScore : .... .. .. . . . . ...... .. . ....... ... ..... ... .. . . . . . . ... . ... . .. . . . . . .............................................................................................. . . . . . ... ...... ........... ... . . . . ... .... . .... . .... . . .... . .. ... . . .... . . . .. . . . . .. . ..... . .... . . . . . . . . . . .. . . . . . . . . . . ....... . ... .. .. . . . . . . . . . . . .. . . . ... ... .. . .. . . ..
lowQualScore : 6666 99 99 2 8 0 0 666666 66 4 8888888 777 33333 111 22 3 1 6 0 0 0 000 0 000 4 11 0 4 4 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 4 4 4 4 222 888888 11111111111 888 9 3 6 6 444 7777 6 7777 6 5555 4 6 5555 6 00 000 4 4 9999 4 4 0 55 4 1 4 4 11 7 11111 4 3333 4 1 4 4 4 4 4 9 4 8 11 4 0 0 0 0 0 1 7 4 4 9999999 6 444 00 22 9 7 7 9 3 7 7 9 5 1 1 88 1 5 4 444 000 22 1 33 3 3 22
consensus : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTA---TAACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
Reference ( family-2453 ) : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTA---TAACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
gi|1 : CGCACCT----AAACTGCCTAAAGGCCTGATTAC--AC--AGCAAGTTATGAATATATGTGT-AAA-ATATTTAAAATGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTACA-GTATTC-ATGA-GAAACAA-AC---GC-TTC---AAA-TTAG--GTAGTGGACTCT-A-AACACATTTATTT-GC-TAAT-------AT-------------------------G-TTGGGGT-------------AA----A--------T-----------T----------GTA-TG-TTA-A-A-TCAATTT---CAT------TATG---------A-TAT---TATTTTCTTCTA-TTCAAAAAT-G-GTGAG-GAGA---GAAATT----AA-GTT----GTATA-AA--A-TTAATTCA-CA-A--A-ATA--TGCCCA-T-A----TT-TA-CTG-AAGT--CG-TTTTCAGGG-TTCAGAATTTTAATGAAAA-T--CTTTCC-AGTT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTTAA-TTTAATCTTA-ATTGCATGT-CCT--TGTATATTTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATGAATTACTTT-GGAAC-CCTGCTTCTA----AA-GCTAT-GCGGAA---AAATCA--CTGTTTGATA-ATCCTG-ACA-TTAG-ATACATTT-CACAATCAAA-TTCT-TA-A-TATGAT---AAG---A-TT-CTCT--TC-CAC-TCTT--ACGCACACGTTCTT
gi|10 : ttaCGCACCT----AAACGGTATAAAGGCCCGGTTAC--A------------------TGTGTGT-AAA-ATATTTAATAGGCCTAGGCATAAA--CGGGAGGCATT-------TACA---A-----CA-C-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGACAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTA-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------ttttctttttgtcttttttgttttcttttctgtcattttaat
gi|11 : taTGCAAA-T--CTTTCTAAATT-----TTAGGGGCA--T----A-TGGTAATA-CAT-TTTT-C-ATAATTGAATTTTAATC-TA-ATTA-ATGT-CTT--TTTATATTTCGGCCTCTTTG-ATAAGT--GT-TAA-CATCTTAAAATAATTAGTTTCGGAACGCTAATTTATA---TTGCG-TCT-GCGGAA---AATTCAACTTG-TTGATA-AT-CTG-GCA-TTAA-ATATATgatgttggcgtaaatac
gi|12 : tcATCTTTTTTTAGTTCATATA-GG-GTGAGAG-GATCTGAAATT----AAAGTT----GTATA-GATAA-TTTGATCAACA-TGGA-ATAGATG---A-T-AA---TC-TAATGGCAAGG--TGATTTTCAGGG-TTCAGAA-TTT-AAGAAAGTT--CTTTCCAAGTT-----TTAGGGGCA-ATA---A-TTGTAATG-CAT-TTTT-CAATAATTGAA-TTTAATGTTT-ATTACAT
gi|13 : G-AAGG--TGATTTTCGGGT-TTCAAAACCTT-GTGGAAA-T--ATGTCCAAGCT-----TTGTGGACA-ATC---A-CT-TAATA-TAA-TTCT-A-ATAATTTAC-ATCGATCTTG-ATTACATGTTCTT--TGTATATCTC-GATTT-TTG-TTAGTTC-GT-CAA-CATCTTAGATCATTTATGTT-GG
gi|14 : AAA-CTTGTTTCTA-----ATGCTAT-GTGGAA---ATTTCA--CTC-TTGATATATC-TG-ACA-TTAA-AT----------AATCAAA-TTCC-TT-A-TATAAC---ACG-ACA-GT-TTCC--TTCCAC-TATT--ATG
gi|15 : TAT-GCGGGA---ATTTCA--CTG-TTGATA-ATCATT-ACA-TTGA-ATATATTC-AACAATCGAA-TTCC-CT-A-TGTAAT---GAG-A-ATGT-TTCCT-TT-CAC-TCTT--ACGCACGCGGTTTTgtacttgtatgtagttttactttgattacatgttactgt
gi|16 : GCAC-T----GAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTGTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATACA--CGGGAGGCATA-------TACA---A------A-C-AC--GTA-TTAGAAAAATAATTGCA-TTAATT-ATAA-GAGATGA-AA---GC-TTC---aatttggttttgttgctgtagtttttgttttgt
gi|17 : CA--CTG-TTGATA-ATACTG-ACA-TTAA-ATATATTT-CAAAAAGAAA-TTCC-TA-A-T-TGAT---AAG-A-A-GT-TTCC--TT-TCC-TCTTTAACGCACGTGTTTTT
gi|18 : CACCTTTAGAAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACAAATGTGT-AAA-ATATTTAATAGGC------ATGTA--CGGGATGCATATACATTGTACA---A-----CA-A-AC--GTA-TTAGAAAAAgttttttgtttgtttgtttttgttttggtattt
gi|19 : TATTT-GC-AAAT-------TT-C-TAAAACATAGAT----------G-TT----G-------------GTGTTAA--------T-----------T----------CTTCTT-TTA-A-A--CAATTT---GAT------TATACTCTTTTTTT-TCT---TTTTTTCTTCTAATTCAAAGGAGG-G
gi|2 : CACATTT----AAAAGGCATAAAGGCCCGACTGC--AC--ATTAAGTTTTGAACATGTGTGT-AAA-ATATTCAATAAGC------ATATATACGGGAGGCATA-------TACA---A-----CA-C-AC--GTG-TTAGAAAAA----------------ATGA-GAGATAA-AC----C-TTC---AAA-TTAT--ATAGAGGACTCA-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------CCCGCATAGATG-TT----T-------------TTGTAAA--------T-----------T----------CCT-TT-TTA-A-A-TAAATTT---GAT------T------------------------TTCTTCTATTTCAAAAACGG-GCGAG-G-GA---TAAATT----AA-GTC----GTATA-AA----TTCAGTCA-CA-A--A-TTA--TG---A-T-A----TT-TG-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTACGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACACGTACTT--TGTATGTCTC-CCCTC-TTG-ATAATTT-GT-TAA-CATCTTAAATAAATTAGTTT-CAAAC-CTTGTTTC-----TAACGCTAT-GCGGAA---ATCTCA--TTG-TTGATA-ATCAAGAACATTTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-ACA-GT-TTCCATTC-CAC-TCTT--ACGCACGCGTTT
gi|20 : taTTAA--CTG-TTGATA-ACCCTG-ACAATT----TGTATCT-CAGGATCAAA-GTTC-TA-A-CATAAA---AGG-A-A-TT-TTCC--TTCCAC-CCTT---TACTCGCGCTTTgttttgtttgtttgtttttgtttgt
gi|21 : tCG-TTAATACGTATTTTCACAATCAAAGTTCCTTA-A-T-TGCTAGAAAGAA-A-GT-TTCT--TC-CAC-TC-T--ACGcatttacat
gi|22 : TC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATAAATTT-GAAAT-CTTGTTTC-----TAACGCTAT-GTGGAA---A----------------A-ATCCTG-ACA-TTAA-ATATATTT-tttcttttttcgtttctgtctttttctttctt
gi|23 : TGTTTCTA-----ATGCTAT-GTGGAATTCACTTCA--TTG-ATAATATATC--G-ACA-T-AA-ATA---------AATCAAA-TTCC-TT-A-TAACAC---ACGAA-A-GT-TTCC--TT-t
gi|24 : TG-TTGATA-ATCCTG-GCA-TTAA-ATATA----------------TCC-T-------------------A-GT-TCCT--TC-CAC-TCTT--ACGCACACGTTTTT
gi|25 : TTTTCAATATGTGTGT-AAA-ATATTTACTAGGC------ATGTA---------TAAA-------TATA---A-----CA-A-AT--ATA-TCAGAAAAATAATTGCA-Tcttttcttttttctcattttagc
gi|26 : AAAACGG-ATGAT-G-AA---GAAATT----AA-GTT----GTATC-AA--A------TCA-CA-T--A-CTA--TGATCA-T-A----TT-TA-TGG-GAGG--TGA
gi|27 : ACATGTACTT--TGTATGTCTC-GCATC-TTA-ATAAGTC-GT-TAA-CATCTT
gi|3 : TGTGTAT-AAA-ATATTTAATAGGC------ATATA--------------------TACA---A-----TA-A-AC--GTA-TTAGAAAAATAATTGCA-TTGTTT-ATGA-GAGATTT-AC---GC-TTTCAAAAA-CCAGATGTAGTGGACTCT-A-AACACATTTATTTTGC-AAATTTCTTCGTT-CAT----------C----------A-TT----CTATCCATTGTATGAT----G--------TGTGGCGTAAAGT----------CTT-TG-TTACATA-TCAATTTCTAGATATTGAATATG---------G-CTT---TATTTTCTTCTAATTCAAAAACGG-GTGAG-G-GG---GGAAT-----AA-GTT----GTATA-AA--A-TAAAGTCG-CAAT--ATATA--TA---A-T-A----TT--A-TGT-AAGGAGTGATTTTCGGGG-TT-GGAATTTT-AT-AAAA-T--CCTTCTAAGTTAAGTTTTAGTGACA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-A-------------------TAAATTAATTAGTTT-GGAGC-ATTGTTTTTA---C--CACTAT-ACGGAA---AATTAG--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAGTCAGA-TTCT-TA-A-TATGAT---AAGAA-A-AT-TTAT--TTCCAC-TCTT--ACGCACGCGTTTT
gi|4 : CGCACCT----AAACAGTATA--TGCCCAATTAC--AC--AGCACGTTTTGAACATGTGTTTTAAA-ATATTTAATAGGC------ATATA--CAGGAGGCATG-------TGTA---A-----CA-A-AC--GTA-T-AAAAAAATAACTGCA-ATATTT-ATGA-GAGATAA-AC---GT-TTC---AAA-TTAG--GTAGTCGTCTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-GCAATTT---GAT------TATA---------G-TCA---TATTTTCTTCTAATTGAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GAATA-AA--A-TTAAGTCG-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCCGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGACA-AT----A-TTGTAATG-CAT-ATTT-C-ATAATTGAA-TATAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAATTT-GGAAC-CTTGTTTCTATAGTAACGCAAT-GCGGAA---AATTCA--CTG-TTAATA-ATCCTG-ACA-TTAC-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A------------------CTT--GCGCACGCATTTTTccccttattttttctttgtttttgccattttagcct
gi|5 : gCGCACCT----AA-CG-TATAAAGGCCCGAT-AC--AC--AGCAA-TTTAGATGGTGTGT-T-AAACATATCTAATA-------------A--CGGCA---ATA--------ACC---A-----CA----C--TAA-TTAGAAAAATAAT-GCA-T-ATTT-AT-A-GA-ATAA-AC---ACCTTC---AAAATTAG--ATAGAGGACT-T-A-A-----------T--C-AAAT-------AT-------------------------G-CT------------------AC----A--------T-----------T----------CT---GCTTA-A-A-TCAATTTT--GAT-------ATG-----------TCTCTATATTTTTTTCTATTCCAAAAACGATAT------GA---AAAATT----AA-TTT----GT-TATAA--A-TCAAATAA-CA-T--A-A-A--TG---A-T-AAACTTC-CA-TGG-A-----TAATTTTC-GGG-TT--AAATTCT-ATTAATA-TTCTTTTTTAAG-------TTGAGCGCA-AT----ACTTGTAATGACATCTCTT-C-ATAA-TGAA-TTTAATC--ACATTACA--TACTT----TATGTCTC-GCCTC-CCGAAGAAGTCTGTATAACCATCTTAACTAAATTA-TT----AAC-CT--TTTCT----TTACGC-ATAGCGGAA---AA-TCA--CTG-TTTAAA-AT-CTG--CA-TTAA-ATATA-TT-CAAAAAGAAA-TTTC-TACA-TAT-------AG-A-A-GTATTCC--TT-C-C-TCTTTAAC-CACGGGTTTT
gi|6 : taGG-GCGAG-G-GA---GACATTTTAAAA-GT-----GTATA-AA--AATTATGTCA-C--T--A-ATA--TG---AAT-A----TTGTA-TGG-AAGA--TGATTT-CGGGG-TTCAGAATTT--ATGAAAA-T--CTTTCTAAACT-----TTAGGGGCATATTCTTA-TT-TAATG-CAT-TTTTTC-ATAATTGAA-TTTAATCTTA-ATTACATGTATTTGGTGTATATCTC-GCCTC-TTG-ATAAGTC-AT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTATTCCTA-----ATGCTAT-GCGGAA---ATTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-ATTATGCT----AG-A-A-AT-TTCC--TTCCACTTCTT--ACGCACGCATTTCTgttttttggttgtgttttttgttttatattttccttttttt
gi|7 : CCT----AAACGATATAAAGGGTCGATTACTGACTAAGCATGTTTTGAAC-TGT-TGT-AAATATTTTTAA--GGC------ATATA--TTAGAGGCATA-------TA-A---ATGTATCACA-AC--GTAGTTAGAAATATAAT-GCACTTTTTT-ATGAAGAGATAA-ACTTTGG-TTC---AA--TTAT--GT-GTGGTC-CT-ACGAC-CATTGATTT-GCCAAAT-------TT-C-T----------C----------GGTT----C-------------AT----AGATTGGAATAAA--------T----------CTT-TG-CTA-A-AATCAAATT---GAT------TATG---------GGTCT---TATTTTCTT-TAATTCTAAAACGG-GCGAG-G-GA---GAAATT----AA-GTTTGGGATATA-AA-----TAAGTCC-T-------ATA--TG---A-TAA----TT-TA-AGT-AAGG--TGATTTTCGGAGTTTCAGAATTTT-tttttttctttcttttctctttttttctcat
gi|8 : cttATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTTTATGA-AAGATAACAC---GC-TTC---AAA-TTAG--GTAGAGGACTCTAA-AACACA-TTATTT-GC-AATT-------TTCC-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTT-TG-TTA-A-A-TCAA-TT---GAT------TATG---------G-TCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--T
gi|9 : ATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-AAGATAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTT-GC-AATT-------TT-C-T----------C----------A-TT----C-------------AT----AGATG----T-----------TGGCGTAAATGCTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--TG---
blockSeqs : TTAG TG TA T C CTAGGC TA TACATTG TGC TGTAT CA AG G T C T A C TTT C CAA A AT A A C T C TTCTTCGTTCATCATTCTATCCATTGTATGATGTGTGGCGTAAAGT C C C T A CTA ATTGAA CTCTTTTTTT CTA G T A . TCT TTAA A TGGG T TAA A TGG T GA ATC A A AACT G A C AG T C . T TC T AAGTT T TCTT C G A C T A T T C T GG G T A T A C T G C G TATAGTA A TTC AT AC . T A T T T C G T AC T A A AGA AC TG A AT C T TA
blockSeqs : . . . . T . . . TGC . AC AG . T . . . . . . . . . A . . . . TTCCTCATTCATAGATGTTGGCGTAAATG . . . . . T . GG . A . . . . . . . . AA . AT . . . . . A . . . . . C . . . T . . A . G . . . . . T . A . . . . . . . C T . . TATT . . TT . . T . A . . A . . T . G A . AC G . T C . TA
blockSeqs : . . . . . . . . . . AC . . T . . . . . . . . . T . . . . TTCTAAAACATAGATGTTGGTGTTAATT . . . . . . . G . T . . . . . . . . A . A . . . . . . . . . . . C . . . C . . C . G . . . . . T . A . . . . . . . A G . . TAC . . TT . . . . . . . C . . T . A G . AA G . . C . .
blockSeqs : . . . . . . . . . . C . . T . . . . . . . . . T . . . . TTCTCCCGCATAGATGTTTTTGTAAATT . . . . . . . G . A . . . . . . . . A . T . . . . . . . . . . . C . . . C . . . . G . . . . . T . A . . . . . . . A A . . TTT . . TC . . . . . . . G . . A . A G . AA G . . C . .
blockSeqs : . . . . . . . . . . C . . T . . . . . . . . . A . . . . TTCTCATTCATAGATGTTGGCGTAAATG . . . . . . . G . A . . . . . . . . A . T . . . . . . . . . . . C . . . T . . . . G . . . . . T . A . . . . . . . T G . . TA . . CT . . . . . . . C . . A . A A . AA T . . . . .
blockSeqs : . . . . . . . . . . A . . T . . . . . . . . . T . . . . TTCTCGGTTCATAGATTGGAATAAAT . . . . . . . G . T . . . . . . . . A . T . . . . . . . . . . . C . . . C . . . . G . . . . . T . A . . . . . . . A A . . TA . . AT . . . . . . . C . . A . A G . A G . . . . .
blockSeqs : . . . . . . . . . . C . . T . . . . . . . . . A . . . . TTCTCGTTCATATT . . . . . . . . . A . . . . . . . . A . T . . . . . . . . . . . . . . . C . . . . . . . . . . . . A . . . . . . . A G . . TA . . AT . . . . . . . C . . A . A C . A G . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . A . . . . ATGCTACATT . . . . . . . . . T . . . . . . . . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TA . . TT . . . . . . . A . . T . A G . A G . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . TA . . A . . . . . . . C . . A . A G . A A . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . G . A G . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . A A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons : *** TA***** A**
originalCons : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTA---TAACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
finalCons : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTATTT-ATGA-GAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-GC-AAAT-------TT-C-T----------C----------G-TT----C-------------AT----A--------T-----------T----------CTT-TG-TTA-A-A-TCAATTT---GAT------TATG---------G-TCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTCTA-----ACGCTAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAGA--A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1111111 111 111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111 222222222222 111 1111 11111 1111 11111 111 1
lowQualScore : 0000 66 66 0 0 4 8 999999 44 0 0000000 111 88888 111 99 3 3 4 4 4 777 4 777 4 66 1 4 4 4 4 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 4 4 4 4 222 222222 111111111111 777 4 3 3 3 666 7777 3 7777 3 8888 0 3 6666 3 55 444 4 4 3333 4 4 4 55 4 1 4 4 66 2 11111 4 8888 4 1 4 4 4 4 4 1 4 4 66 4 4 4 4 4 4 1 4 4 4 00000 3 3 666 55 44 2 5 2 2 5 2 0 2 1 3 3 33 3 1 1 555 222 33 3 77 2 3 99
lowQualScore : .... .. .. . . . . ...... .. . ....... ... ..... ... .. . . . . . ... . ... . .. . . . . . ......................................................................................... . . . . . ... ...... ............ ... . . . . ... .... . .... . .... . . .... . .. ... . . .... . . . .. . . . . .. . ..... . .... . . . . . . . . . . .. . . . . . . . . . . ..... . . ... .. .. . . . . . . . . . . . .. . . . ... ... .. . .. . . ..
lowQualScore : 6666 99 99 2 8 0 0 666666 66 4 8888888 777 33333 111 22 3 6 0 0 0 000 0 000 4 11 0 4 4 0 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 4 4 4 4 222 888888 444444444444 888 9 3 6 6 444 7777 6 7777 6 5555 4 6 5555 6 00 000 4 4 9999 4 4 0 55 4 1 4 4 11 7 11111 4 3333 4 1 4 4 4 4 4 9 4 8 11 4 0 0 0 0 0 1 7 4 4 00000 6 6 444 00 22 9 7 5 9 3 7 7 9 5 1 1 88 1 5 4 444 000 22 1 33 3 3 22
consensus : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTA-TTTATG-AGAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-G-CAAAT-------TT-C-T----------C----------GTT----C-------------AT----A----T-----------T----------CTT-TG-TT-A-A-ATCAATTT---GAT------TAT-G---------GTCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTC-----TAACGC-TAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
Reference ( family-2453 ) : NCGCACCT----AAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTGCA-TTA-TTTATG-AGAGATAA-AC---GC-TTC---AAA-TTAG--GTAGNGGACTCT-A-AACACATTTATTT-G-CAAAT-------TT-C-T----------C----------GTT----C-------------AT----A----T-----------T----------CTT-TG-TT-A-A-ATCAATTT---GAT------TAT-G---------GTCT---TATTTTCTTCTANTTCAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GTATA-AA--A-TTAAGTCA-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTGTTTC-----TAACGC-TAT-GCGGAA---ANTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A-GT-TTCC--TT-CAC-TCTT--ACGCACGCGTTTTT
gi|1 : CGCACCT----AAACTGCCTAAAGGCCTGATTAC--AC--AGCAAGTTATGAATATATGTGT-AAA-ATATTTAAAATGC------ATATA--CGGGAGGCATA-------TACA---A-----CA-A-AC--GTA-TTAGAAAAATAATTACA-GTA-TTCATG-AGAAACAA-AC---GC-TTC---AAA-TTAG--GTAGTGGACTCT-A-AACACATTTATTT-G-CTAAT-------AT-------------------------GTTGGGGT-------------AA----A----T-----------T----------GTA-TG-TT-A-A-ATCAATTT---CAT------TAT-G---------ATAT---TATTTTCTTCTA-TTCAAAAAT-G-GTGAG-GAGA---GAAATT----AA-GTT----GTATA-AA--A-TTAATTCA-CA-A--A-ATA--TGCCCA-T-A----TT-TA-CTG-AAGT--CG-TTTTCAGGG-TTCAGAATTTTAATGAAAA-T--CTTTCC-AGTT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTTAA-TTTAATCTTA-ATTGCATGT-CCT--TGTATATTTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATGAATTACTTT-GGAAC-CCTGCTTC-----TAAAGC-TAT-GCGGAA---AAATCA--CTGTTTGATA-ATCCTG-ACA-TTAG-ATACATTT-CACAATCAAA-TTCT-TA-A-TATGAT---AAG---A-TT-CTCT--TC-CAC-TCTT--ACGCACACGTTCTT
gi|10 : ttaCGCACCT----AAACGGTATAAAGGCCCGGTTAC--A------------------TGTGTGT-AAA-ATATTTAATAGGCCTAGGCATAAA--CGGGAGGCATT-------TACA---A-----CA-C-AC--GTA-TTAGAAAAATAATTGCA-TTA-TTTATG-AGAGACAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTA-G-CAAAT-------TT-C-T----------C----------GTT----C-------------AT----A----ttttctttttgtcttttttgttttcttttctgtcattttaat
gi|11 : taTGCAAA-T--CTTTCTAAATT-----TTAGGGGCA--T----A-TGGTAATA-CAT-TTTT-C-ATAATTGAATTTTAATC-TA-ATTA-ATGT-CTT--TTTATATTTCGGCCTCTTTG-ATAAGT--GT-TAA-CATCTTAAAATAATTAGTTTCGGAACGCTAATTTA-----TATTGCGTCT-GCGGAA---AATTCAACTTG-TTGATA-AT-CTG-GCA-TTAA-ATATATgatgttggcgtaaatac
gi|12 : tcATCTTTTTTTAGTTCATATA-GG-GTGAGAG-GATCTGAAATT----AAAGTT----GTATA-GATAA-TTTGATCAACA-TGGA-ATAGATG---A-T-AA---TC-TAATGGCAAGG--TGATTTTCAGGG-TTCAGAA-TTT-AAGAAAGTT--CTTTCCAAGTT-----TTAGGGGCA-ATA---A-TTGTAATG-CAT-TTTT-CAATAATTGAA-TTTAATGTTT-ATTACAT
gi|13 : G-AAGG--TGATTTTCGGGT-TTCAAAACCTT-GTGGAAA-T--ATGTCCAAGCT-----TTGTGGACA-ATC---A-CT-TAATA-TAA-TTCT-A-ATAATTTAC-ATCGATCTTG-ATTACATGTTCTT--TGTATATCTC-GATTT-TTG-TTAGTTC-GT-CAA-CATCTTAGATCATTTATGTT-GG
gi|14 : AAA-CTTGTTTC-----TAATGC-TAT-GTGGAA---ATTTCA--CTC-TTGATATAT-CTG-ACA-TTAA-AT----------AATCAAA-TTCC-TT-A-TATAAC---ACG-ACA-GT-TTCC--TTCCAC-TATT--ATG
gi|15 : -TAT-GCGGGA---ATTTCA--CTG-TTGATA-ATCATT-ACA-TTGA-ATATATTC-AACAATCGAA-TTCC-CT-A-TGTAAT---GAG-A-ATGT-TTCCT-TT-CAC-TCTT--ACGCACGCGGTTTTgtacttgtatgtagttttactttgattacatgttactgt
gi|16 : GCAC-T----GAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTGTTGAACATGTGTGT-AAA-ATATTTAATAGGC------ATACA--CGGGAGGCATA-------TACA---A------A-C-AC--GTA-TTAGAAAAATAATTGCA-TTA-ATTATA-AGAGATGA-AA---GC-TTC---aatttggttttgttgctgtagtttttgttttgt
gi|17 : CA--CTG-TTGATA-ATACTG-ACA-TTAA-ATATATTT-CAAAAAGAAA-TTCC-TA-A-T-TGAT---AAG-A-A-GT-TTCC--TT-TCC-TCTTTAACGCACGTGTTTTT
gi|18 : CACCTTTAGAAACGGTATAAAGGCCCGATTAC--AC--AGCAAGTTTTGAACAAATGTGT-AAA-ATATTTAATAGGC------ATGTA--CGGGATGCATATACATTGTACA---A-----CA-A-AC--GTA-TTAGAAAAAgttttttgtttgtttgtttttgttttggtattt
gi|19 : TATTT-G-CAAAT-------TT-C-TAAAACATAGAT----------GTT----G-------------GTGTTAA----T-----------T----------CTTCTT-TT-A-A-A-CAATTT---GAT------TAT-ACTCTTTTTTTTCT---TTTTTTCTTCTAATTCAAAGGAGG-G
gi|2 : CACATTT----AAAAGGCATAAAGGCCCGACTGC--AC--ATTAAGTTTTGAACATGTGTGT-AAA-ATATTCAATAAGC------ATATATACGGGAGGCATA-------TACA---A-----CA-C-AC--GTG-TTAGAAAAA----------------ATG-AGAGATAA-AC----C-TTC---AAA-TTAT--ATAGAGGACTCA-A-AACACATTTATTT-G-CAAAT-------TT-C-T----------CCCGCATAGATGTT----T-------------TTGTAAA----T-----------T----------CCT-TT-TT-A-A-ATAAATTT---GAT------T------------------------TTCTTCTATTTCAAAAACGG-GCGAG-G-GA---TAAATT----AA-GTC----GTATA-AA----TTCAGTCA-CA-A--A-TTA--TG---A-T-A----TT-TG-TGG-AAGG--TGATTTTCGGGG-TTCAGAATTTT-ATGAAAA-T--CTTTCTACGCT-----TTAGGGGCA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACACGTACTT--TGTATGTCTC-CCCTC-TTG-ATAATTT-GT-TAA-CATCTTAAATAAATTAGTTT-CAAAC-CTTGTTTC-----TAACGC-TAT-GCGGAA---ATCTCA--TTG-TTGATA-ATCAAGAACATTTAA-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-ACA-GT-TTCCATTC-CAC-TCTT--ACGCACGCGTTT
gi|20 : taTTAA--CTG-TTGATA-ACCCTG-ACAATT----TGTATCT-CAGGATCAAA-GTTC-TA-A-CATAAA---AGG-A-A-TT-TTCC--TTCCAC-CCTT---TACTCGCGCTTTgttttgtttgtttgtttttgtttgt
gi|21 : tCG-TTAATACGTATTTTCACAATCAAAGTTCCTTA-A-T-TGCTAGAAAGAA-A-GT-TTCT--TC-CAC-TC-T--ACGcatttacat
gi|22 : TC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATAAATTT-GAAAT-CTTGTTTC-----TAACGC-TAT-GTGGAA---A----------------A-ATCCTG-ACA-TTAA-ATATATTT-tttcttttttcgtttctgtctttttctttctt
gi|23 : TGTTTC-----TAATGC-TAT-GTGGAATTCACTTCA--TTG-ATAATATATC--G-ACA--TAA-ATA---------AATCAAA-TTCC-TT-A-TAACAC---ACGAA-A-GT-TTCC--TT-t
gi|24 : TG-TTGATA-ATCCTG-GCA-TTAA-ATATA----------------TCC-T-------------------A-GT-TCCT--TC-CAC-TCTT--ACGCACACGTTTTT
gi|25 : TTTTCAATATGTGTGT-AAA-ATATTTACTAGGC------ATGTA---------TAAA-------TATA---A-----CA-A-AT--ATA-TCAGAAAAATAATTGCA-Tcttttcttttttctcattttagc
gi|26 : AAAACGG-ATGAT-G-AA---GAAATT----AA-GTT----GTATC-AA--A------TCA-CA-T--A-CTA--TGATCA-T-A----TT-TA-TGG-GAGG--TGA
gi|27 : ACATGTACTT--TGTATGTCTC-GCATC-TTA-ATAAGTC-GT-TAA-CATCTT
gi|3 : TGTGTAT-AAA-ATATTTAATAGGC------ATATA--------------------TACA---A-----TA-A-AC--GTA-TTAGAAAAATAATTGCA-TTG-TTTATG-AGAGATTT-AC---GC-TTTCAAAAA-CCAGATGTAGTGGACTCT-A-AACACATTTATTTTG-CAAATTTCTTCGTT-CAT----------C----------ATT----CTATCCATTGTATGAT----G----TGTGGCGTAAAGT----------CTT-TG-TT-ACATATCAATTTCTAGATATTGAATAT-G---------GCTT---TATTTTCTTCTAATTCAAAAACGG-GTGAG-G-GG---GGAAT-----AA-GTT----GTATA-AA--A-TAAAGTCG-CAAT--ATATA--TA---A-T-A----TT--A-TGT-AAGGAGTGATTTTCGGGG-TT-GGAATTTT-AT-AAAA-T--CCTTCTAAGTTAAGTTTTAGTGACA-AT----A-TTGTAATG-CAT-TTTT-C-ATAATTGAA-TTTAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-A-------------------TAAATTAATTAGTTT-GGAGC-ATTGTTTT-----TACCAC-TAT-ACGGAA---AATTAG--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAGTCAGA-TTCT-TA-A-TATGAT---AAGAA-A-AT-TTAT--TTCCAC-TCTT--ACGCACGCGTTTT
gi|4 : CGCACCT----AAACAGTATA--TGCCCAATTAC--AC--AGCACGTTTTGAACATGTGTTTTAAA-ATATTTAATAGGC------ATATA--CAGGAGGCATG-------TGTA---A-----CA-A-AC--GTA-T-AAAAAAATAACTGCA-ATA-TTTATG-AGAGATAA-AC---GT-TTC---AAA-TTAG--GTAGTCGTCTCT-A-AACACATTTATTT-G-CAAAT-------TT-C-T----------C----------GTT----C-------------AT----A----T-----------T----------CTT-TG-TT-A-A-AGCAATTT---GAT------TAT-A---------GTCA---TATTTTCTTCTAATTGAAAAACGG-GTGAG-G-GA---GAAATT----AA-GTT----GAATA-AA--A-TTAAGTCG-CA-T--A-ATA--TG---A-T-A----TT-TA-TGG-AAGG--TGATTTTCGGGG-TTCCGAATTTT-ATGAAAA-T--CTTTCTAAGCT-----TTAGGGACA-AT----A-TTGTAATG-CAT-ATTT-C-ATAATTGAA-TATAATCTTA-ATTACATGTACTT--TGTATATCTC-GCCTC-TTG-ATAAGTC-GT-TAA-CATCTTAAATAAATTAATTT-GGAAC-CTTGTTTCTATAGTAACGC-AAT-GCGGAA---AATTCA--CTG-TTAATA-ATCCTG-ACA-TTAC-ATATATTT-CACAATCAAA-TTCC-TA-A-TATGAT---AAG-A-A------------------CTT--GCGCACGCATTTTTccccttattttttctttgtttttgccattttagcct
gi|5 : gCGCACCT----AA-CG-TATAAAGGCCCGAT-AC--AC--AGCAA-TTTAGATGGTGTGT-T-AAACATATCTAATA-------------A--CGGCA---ATA--------ACC---A-----CA----C--TAA-TTAGAAAAATAAT-GCA-T-A-TTTAT--AGA-ATAA-AC---ACCTTC---AAAATTAG--ATAGAGGACT-T-A-A-----------T---CAAAT-------AT-------------------------GCT------------------AC----A----T-----------T----------CT---GCTT-A-A-ATCAATTTT--GAT-------AT-G----------TCTCTATATTTTTTTCTATTCCAAAAACGATAT------GA---AAAATT----AA-TTT----GT-TATAA--A-TCAAATAA-CA-T--A-A-A--TG---A-T-AAACTTC-CA-TGG-A-----TAATTTTC-GGG-TT--AAATTCT-ATTAATA-TTCTTTTTTAAG-------TTGAGCGCA-AT----ACTTGTAATGACATCTCTT-C-ATAA-TGAA-TTTAATC--ACATTACA--TACTT----TATGTCTC-GCCTC-CCGAAGAAGTCTGTATAACCATCTTAACTAAATTA-TT----AAC-CTTTTCTT-----T-ACGC--ATAGCGGAA---AA-TCA--CTG-TTTAAA-AT-CTG--CA-TTAA-ATATA-TT-CAAAAAGAAA-TTTC-TACA-TAT-------AG-A-A-GTATTCC--TT-C-C-TCTTTAAC-CACGGGTTTT
gi|6 : taGG-GCGAG-G-GA---GACATTTTAAAA-GT-----GTATA-AA--AATTATGTCA-C--T--A-ATA--TG---AAT-A----TTGTA-TGG-AAGA--TGATTT-CGGGG-TTCAGAATTT--ATGAAAA-T--CTTTCTAAACT-----TTAGGGGCATATTCTTA-TT-TAATG-CAT-TTTTTC-ATAATTGAA-TTTAATCTTA-ATTACATGTATTTGGTGTATATCTC-GCCTC-TTG-ATAAGTC-AT-TAA-CATCTTAAATAAATTAGTTT-GGAAC-CTTATTCC-----TAATGC-TAT-GCGGAA---ATTTCA--CTG-TTGATA-ATCCTG-ACA-TTAA-ATATATTT-CACAATCAAA-TTCC-TA-ATTATGCT----AG-A-A-AT-TTCC--TTCCACTTCTT--ACGCACGCATTTCTgttttttggttgtgttttttgttttatattttccttttttt
gi|7 : CCT----AAACGATATAAAGGGTCGATTACTGACTAAGCATGTTTTGAAC-TGT-TGT-AAATATTTTTA--AGGC------ATATA--TTAGAGGCATA-------TA-A---ATGTATCACA-AC--GTAGTTAGAAATATAA-TGCACTTT-TTTATGAAGAGATAA-ACTTTGG-TTC----AA-TTAT--GT-GTGGTC-CT-ACGAC-CATTGATTT-GCCAAAT-------TT-C-T----------CG---------GTT----C-------------ATAG--A----TTGGAATAAA--T----------CTT-TG-CTAA-A-ATCAAATT---GAT------TATGG---------GTCT---TATTTTCTT-TAATTCTAAAACGG-GCGAG-G-GA---GAAATT----AA-GTTTGGGATATA-AA-----TAAGTCC-T-------ATA--TG---A-TAA----TT-TA-AGT-AAGG--TGATTTTCGGAGTTTCAGAATTTT-tttttttctttcttttctctttttttctcat
gi|8 : cttATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTATTTTATG-AAAGATAACAC---GC-TTC---AAA-TTAG--GTAGAGGACTCTAA-AACACA-TTATTT-G-CAATT-------TTCC-T----------C----------ATT----C-------------AT----AGATGT-----------TGGCGTAAATGCTT-TG-TT-A-A-ATCAA-TT---GAT------TAT-G---------GTCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--T
gi|9 : ATAGGC------ATATA--CGGGAGGCATA-------TACATGCA-----CA-ACACAGGTA-TTAGAAAAATAATTGCA-TTA-TTTATG-AAAGATAA-AC---GC-TTC---AAA-TTAG--GTAGAGGACTCT-A-AACACATTTATTT-G-CAATT-------TT-C-T----------C----------ATT----C-------------AT----AGATGT-----------TGGCGTAAATGCTT-TG-TT-A-A-ATCAATTT---GAT------TAT-G---------GTCT---TATTTTCTTCTATTTCAAAAGCGG-GTAAG-G-TA---GAAATT----AA-GTT----GTATA-AA--A-TTAAATCA-CA-T--A-ATA--TG---