lowQualScore : 1111111111111111111 111111111111111111
lowQualScore : 5555555555555555555 888888888888888888 4 1 1 4 6666 4 4 4 4 2 2 1 1 1 4 1 4 4 999999 11 4 4 4 4 222 4444444 2 11 555555555555555555 1 33 3333 2222222 11 444444 111 1 55555555555555555555555 1 777777777777777777777777777777777 1 3333333333333 111111111111 222222 1 1111 3333 22222222 111 3333333 11111 2222222222222222222222 111 1 7777777777777777777777777 1111 1111 1 11 55555555 11 2222222 1 1 2 333333333333 11 44444444 3333333 3333 1 1 1 222
lowQualScore : 5555555555555555555 222222222222222222 0 5 5 0 1111 0 0 6 0 0 6 3 0 0 5 5 6 5 0 6 5 6 6 0 0 111111 6 22 0 0 0 6 0 666 88 3 3333333 0 3 88 3 3 111111111111111111 2 2 3 33 0 3333 3333333 11 8 333333 666 0 6 6 00000000000000000000000 0 999999999999999999999999999999999 6 7 6 0 8888888888888 33 0 4 555555555555 777777 88 6 4 4444 2222 99 6 6 6 99 22222222 444 0 5 77 5 33 77 5 5555555 1 33333 5 5 9999999999999999999999 777 999 888 77 666 7 5 5 5 3333333333333333333333333 7777 5 4 0000 6 5 5 5 5 77 11 5 3 1 6 88888888 6 99 55 6 6 6666666 2 6 0 6 6 9 2 0 2 99 1 3 6 0 5 1 222222222222 11 66 33333333 9999999 2222 3 6 3 3 333
lowQualScore : ................... .................. . . . . .... . . . . . . . . . . . . . . . . . . . . ...... . .. . . . . . ... .. . ....... . . .. . . .................. . . . .. . .... ....... .. . ...... ... . . . ....................... . ................................. . . . . ............. .. . . ............ ...... .. . . .... .... .. . . . .. ........ ... . . .. . .. .. . ....... . ..... . . ...................... ... ... ... .. ... . . . . ......................... .... . . .... . . . . . .. .. . . . . ........ . .. .. . . ....... . . . . . . . . . .. . . . . . . ............ .. .. ........ ....... .... . . . . ...
lowQualScore : 0000000000000000000 555555555555555555 0 5 0 0 0000 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 000000 0 00 0 0 0 0 0 000 00 0 5555555 0 0 00 0 0 000000000000000000 5 5 3 33 7 5555 4444444 00 0 000000 888 8 0 0 66666666666666666666666 0 555555555555555555555555555555555 7 3 7 0 8888888888888 44 8 6 666666666666 222222 88 0 2 0000 5555 22 7 7 7 55 55555555 555 1 7 99 7 11 99 7 8888888 0 11111 7 7 4444444444444444444444 333 333 000 99 111 1 7 7 7 5555555555555555555555555 7777 0 0 1111 6 7 4 7 7 99 99 7 9 0 7 55555555 7 22 88 7 7 0000000 2 7 7 7 7 3 5 8 5 22 0 3 7 8 6 0 222222222222 00 66 00000000 0000000 0000 3 7 3 3 333
consensus : NNTTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTGCACA-AACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATNATGCCTTTTGGTCTACCATGCGAGTTTTATGTGCAGTATTNNCTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTG-TCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATCTAATTCTATTTCTAACATTTGTATCTCTTCCTCCAGAAGTGATATTTTCACGAGTAA-TCATATCATTAAAATNNGACNCGCAAAAACGGCTAACNACTTGGCNANCAAAATTCAAAAAAGTCATACATTTAANGANCGTA-CACCGCCGCCACCAAATAATGTAACG--TGTCTATGA-GTT-CAACGC--TTA-TTCTT------ATAGA-CTTAATTTTCGCTCAATCACTGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACAAAANAG----ACAGCATATATATATAAAG--AGCTTCCCTAAT-AA-TAAA-CA-GTACTAGAGGGCA--GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AN--CC-NGTAC-AAGA-CA---AAC-G-AAA--TAG--CTTCGGC--TCT-A-TTC-G-G-CCA-CT-----A-TTCA-ACT----TA--T-CCTAT-C--ACTTC-CTTTATTATTCCCTTNCTGT-C--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACT-CCA-GA---T-CC--C--GGTTT-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATAGTCCTTATCATTAAAGTTACAT----TGAACA-TTGTATTGA--TCAAT-TACCC--TATCATTATAGTC--T---TATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( gi|1 ) : CTTTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCT-A-C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGC-CACAACTTCAAAATGTGATCTAAAAATCACT-CAAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTTG-CTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATCTAATTCTATTCTTAACATTTGTATCTC-TCCTCCAGAA-TGATA-TTTCACGAATAATTCATATAA-TAAAATTAGACAC-CA----TGGCT-ACAATTTGACAAACAAAATT-------------CA---AAGAAGCGTA-CACCGCTGCCA-CAAACAATGTAACG--T-TCTATGA-GT--CAACGC--TTA-TTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAAAG----CCAGCATACATATATAAAG--AGCTTCCCTAATAAAATAAA-CA-GTACTAGAGGGCA--G-TCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AG--CT-AGTAT-AAGA-TA---AAT-G-AAA--TAG--CTTCGGC--TCT-A-TTC-G-G-CCA-CT-----C-TTCA-ACT----TA--T-CCTAT-C--ACTTC-CTTTATTATTCCCTTTCTGT-C--TTATATT-ATTA-CCTGTTGCT-G--CTTCGAGCTTC-GACCGTAAAGTGATCTCAAGACT-C---AA---T-CC--C--GGTTT-ATATA-CCATTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACCGCCGGGTT--AGTCTATC-TTTATTAT-GTCCTTATCATTAAAGTTACAT----TGAACAATTGTATTGA--TCAATATA-CC--TATCATTATAGTC--T---TATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACATA
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCC-AACACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTGCACA-AACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATGATGCCTTT-GGTCTACCATGCGAG-TTTATGTGCAGTATT
gi|13 : CAACCACTGGCAGATTTCCCAA-CACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|16 : tTTAATAAAATTATG-CTTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTG-TCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATCTAATTCTATTTCTAACATTTGTATCTCTTCCTCCAGAAGTGATATTTTCACGAGTAA-TCATATCATTAAAATTTGACCC-CA----TGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACA---AAGAAGCGTACCACCGCTGCCACCAAATAATGTAACG--TGTCTATGA-GT----------TCA-TTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----A------T---ATTTATA-TTGTTAG-----------CCCTAC
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|4 : -TAAAATAAAACACGCAAAAACGGCT-ACCACT--GCCACCAAAATT--------------ATTTAATGACTTTA-TCCTGTCGCCA--AACCAATATAATGAAT-TC---GA-----CCACTT--TTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----A------G---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATACAAAACAGATGACCAACA-ACTTA----------GCTTCC--AAACAACTAGA-CAAGCAACAGAGA-CA--GGTCGGCT--CT-ATTCGGGCCAC-TATCT-CTGTCA-----CAGTAC-CTA--TTCCC-TAACAA--AAT-TAGT-ACCATGGCCT-TGGAC---GACCACCAAGAATGC-TA-AC--CC-TATAT-ACGG-TAATCAACAG-AGA--CAG---GTCGGC--TCT-A-TTCGG-G-TCA-CTATCTCT-TTTACACC----TATTT-CCTAT-C--A
gi|17 : gagttgaatgcctttgaaatcattgtttatctacatttctaacttttcaatttcttgttccaaatttgaaatttcaaatgtcaaaccatccatgtgactactcattgtcaaactttactCGTA-CATCGCTGCCACCAAATAATGTAACG--TGTCTATatgcttgtcactaatgccaca
gi|12 : AATGTAACA--TGTCTATGATGT--CAACGC--TTA-ATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----A------G---ATTT
gi|5 : tattgttggtaTGTAACG--TGTCTATGA-GTT-CAACGC--TTA-TTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AGATTTAT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTAC-AAAAAG----ACAG--TATATAAATAAAT--GACTCCCCTAAT--AATAAACCA-GTACT--AGGGCAG-G-TCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--T-T-------TACCA-C----CTGG-TA-AG--CC-TGT----AGA-C----AAT-GAAAA--TAGACTTTCGGCTTTCT-A-TTCGG-G-CCA-CTAA---A-TTC--ACTTTTATA--T-CCTATGC--ACTTC-CTTTATT-TTCCCTTTCTGT----TTATATTGAT---CCAGTTGCTGG--CTATGAGCTTCGGACCGTAGAGTGAT-TCA--ACT-CCAGGA---T-CC--C--GA--T-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGTTGACGGCCGGATT--AGTCTATC-TTTATTATAGTCTTTATCAT
gi|3 : gtTAACG--TGTCTATGA-GTTTCAACGCATTTA-TTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAA------TTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTACAAAGA----------CATATATATATAAAG--AGCTTCCCTA------TAAA-TACGTACTAG-GGGCA--GGTCGGCT--CT-ATTCGGGCCAA-TATAC-C-AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGT-CAGTAA-TATGG--T-T-------ACCAACT----CTGG-TA-AGA-CT-AGTCA-AAGACTA---AAT-G-AAAACTAG---TTCGGC--TCT-A-TTC-G-GGCCAACT----------A-ACTCAC-TA--T-CTTTT-T--ACTTCTCTTTATTATTCC-TTTCTGT-CACTTAAATT-ATTA-CCTGTTGCT-GTGCTTTGAGCTTC-GACCGTAAAGTGATCTCAAGCCT-C---CAGATT-CCAAC--GGTTTAATATA-CC-T-----GCCG-TTTCATTTCAATAGGGGGTGA-CG-CGGGTT--AGT-TATCTTTTATTAT-GTCCTTTTCATTAAAGTTACCTGTCATG-ACA--TGTATTGA--TCAAT-TA-CCTATATCATTATAGT---T---TATC-TTGAAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|6 : AA-TTTA---AATGG----ACAGTATAGATATG--AAG--ATGTTCCCTAATGAATTAA--CA-GTACTGGAGA-CA--GGTCGGCT--CT-ATTCGGGCCAC-TAAGA-CCAGTA-----C--CAT-CTATTTCCCCCTGATAT--TGC-CATTT-CTTTGG--T-TTTTGATTAACAACC----TTGG-TA-AT--CCCATTAT-C----TA---A-----------------TCTGT--TCT-T-TTCAG-G-TCA-CT----------A-AAT----CA----CCTAT-TCTACTTC-CTTGATCACCCCTTTACTGC-C--ATAAATT-CTTA-CCTGTTTAC-A--CTTTAAATTTT-GATCTCAGAATGACTCCGATACTGC---AGGT-T-CT--C--GGTTA-ATTTA-CCCCTGG--GGTG-TTCTA-TT----AAGGGGTGGC----AGGTT--ATTTCACT-TTTAGTATAGTCCTTCTTAT--------CAT-------ATAGTTTCATCGA--TCA-T-TA-CCATTAT-ATTATAGTA--TGTCTATC-A----AATGT-A-AAAC-AATGAA---TATTACAt
gi|2 : CGTATATATATAAAGCGAG-TTCCCTAATAAA-TAAA-CA-GTACTAG--GGCA--GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT---ATTT-CCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AAGCCT-AGTAC-AAGT-CA---AAT-G-AAA--TAG--CTTTGGC--TCTTA-TCG-G-G-CCA-CT-----AATTCA--TT----TA--TTCCTAT-A--ACTTC-CTTTATTATTTCCTAACTGT-T--CTAATTT-ACAAACCTGTTGCT-G--CTATGAGCTTC-GACCGTAGAGTGATCTCAAGACT-CCA-GA---TCCC--C--GGTTT-ATATA-CCCT--G--GGCG-TTCCA-TTCAA-A-GGGGTGACCGCCGGGTT--AGTCTATC-TTTATTATAGTCCTTATCATTAAAGTTACAT----TGAACA--TGATTTGA--TTCAT-TACCC--TATCATTATAGTCCTT---TATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACAT
gi|10 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctaTACTGGGAAACAAGG-TCGGCT--CC-TTTTCGGCCGC-TAACC-CT-GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGC-CAGTACCGGTAG--CCT-------AAATAC------TGGACACAC--CT-TATACCAAAA-TA---AAC-G-AA---CAG--CTTCAGC--TCT-A-TTC-AAG-CCA-CC--------TGA-A---------------AT-C--ACTTC-C
gi|11 : ATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-
gi|7 : ----CTGG-TA-AAGCCT-AGTAC-AAGA-CA---AAT-A-AAA--TAG--CTTCGGC--TCT-AATTC-G-G-CCA-CT-----A-TTCA-ATT----T---T-CTTATAG--ATTCC-CTTTATTATTTCCTAACTGTCC--TTA-ATT-TCAA-CCTGTTGCT-G--CTATGAGCTTC-GA-CGTAGTGTGATCTCAAGACT-CCA-GA---T-CC--CCAGATTT-AATTACCCCTTGGGAGACGTTTCTA-TTCAA-A--GGGTGACGGCCGGGTTTAAGTCTATCTTTTAATAC-GTCCTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCATTAC--CC--TATCCTTATAGT---T---TATG-TTTAAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcacctatctttttacttcctttattattccctttctgtctta
gi|15 : -ACT----TA--T-CCTAT-T--ACTTC-TTTTATTATTCCCTTTCTGT-C--TTAAATT-ATTA-a
gi|11 : tc-ACC----TA--T-CTTTT-T--ACTTC-CTTTATTATTCCCTTTCTGT-C--TTA
gi|14 : attttccctgacaatgtcagtaactatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcCCTTACTGT-C--TTAAATT-ATTA-CCTGTTTCT-G--CTTTGAGCTTC-AACCGTAGAAT
gi|9 : TGCT-G--CTATGAGCTTC-GACCGAAGAGTGATCTCAAGACT-CCA-GA---T-CC--CC-GGTTT-ATATA-CCCTAGG--GACG-TTCTA-TTCAA-AGGGG-TGACGGCCGGGTT--AGTCTATC-TTTATTATAGTCTTTATCATTAAAGTTACAT----TGAACA--TGTATTGA--TTCAT-TACCC--TATCATTATAGTCT-T---TATCTATAAAAca
Alignments
lowQualScore : 2 333 333 11 33 4444 1 2 2 1 2 1 1 2 33 1 1 2 11 22 333333 11 1 99999999999999999999 1 1 44444444 555555 2 999999999999999999999999 1 11 111 333333 111 2 33333333333333333333333 33333333333 5555555555555 11 222 22 1 1111 11111111 11 3333333 11111 11111 111 111111 1 1 333333333333333333333333 11 11 1 111 1 11 1111 1 222 1 1 1 111
lowQualScore : 0 555 555 88 99 7 4444 3 7 7 2 0 0 5 0 5 5 0 1 88 0 7 22 2 2 5 2 5 0 88 77 6 888888 7 88 7 5 00000000000000000000 3 3 3 88888888 7 22 1 000000 0 3 1 0 7 0 1 1 444444444444444444444444 0 2 11 0 6 1 6 99 111 555555 000 3 66666666666666666666666 8 88888888888 2 5555555555555 2 3 2 8 22 333 3 99 2 6 22 6 3 7777 5 77 5 5 777 77777777 55 3 5 66 5 00 66 5 0000000 55555 5 5 99999 1 111 5 888 99 777 222222 66 5 5 5 0 5 222222222222222222222222 00 4 1 66 5 88 11 1 5 0 5 5 1 000 77 5 5 55 77 0 5 5 5 3 11 77 5 00 3 4444 3 777 6 1 6 888 666 6 0 2 0 0 777
lowQualScore : . ... ... .. .. . .... . . . . . . . . . . . . .. . . .. . . . . . . .. .. . ...... . .. . . .................... . . . ........ . .. . ...... . . . . . . . . ........................ . . .. . . . . .. ... ...... ... . ....................... . ........... . ............. . . . . .. ... . .. . . .. . . .... . .. . . ... ........ .. . . .. . .. .. . ....... ..... . . ..... . ... . ... .. ... ...... .. . . . . . ........................ .. . . .. . .. .. . . . . . . ... .. . . .. .. . . . . . .. .. . .. . .... . ... . . . ... ... . . . . . ...
lowQualScore : 0 000 000 33 00 3 0000 3 3 3 5 0 0 5 0 0 5 0 0 77 7 3 00 5 5 5 5 0 0 00 55 7 333333 3 33 3 0 00000000000000000000 7 3 3 33333333 3 00 0 000000 7 7 0 7 3 7 0 0 000000000000000000000000 0 0 22 7 7 7 7 22 777 888888 888 3 22222222222222222222222 0 00000000000 5 0000000000000 5 2 5 0 44 555 2 22 5 7 55 7 3 0000 7 99 7 7 666 99999999 00 2 0 99 0 55 99 0 7777777 11111 0 0 88888 0 666 0 888 22 000 222222 99 0 0 0 0 0 111111111111111111111111 33 4 0 11 0 66 99 0 0 7 7 7 4 000 99 7 7 33 99 9 7 7 7 7 44 99 7 77 2 2222 2 555 7 2 7 777 777 7 0 5 0 0 555
consensus : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAA-CACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATGC--TTTGGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-TGATATTT------TCA-----------CGANTAAT-CAT-ATCA--------TTAAAATTAGACAC-CA---ACGGCTA-CAATTTGACAAACAAAATTCAAAGAAG------A---AA-GA-CGTA-CACCGCTGCCACCAAACAATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACAAAA-AGACAGC-TATATATATAAAG--AGCTTCCCTAAT-AA--TAAAC-A-GTACTAGAGGGCA-GGTCGGCTC--TA-TTCGGGCCACT-ATCCCC-AGCA-----C--TAT-CTATTTTCCC-TGACAA--TGTC-AGTAACTATGG--T-T-------AACCACC----CTGG-TA-A--N--CTNGTAC-AAGAC-A---AAC-GAAA--TAG--CT--TCGGCT--C-TA-TTC-GG-CCA-CT-A-----T-TCA-ACCT----A--TCCTAT-CACTTC-CTTTATTATTCCCTTNCTGTC--TTAAATT-AT-TACCTGTTGCTG--CTNTGAGCTTCG-ACCGTAGAGTGATCTCAAGACTCCAG-A-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTCCTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACC-C-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( family-2444 ) : NNTTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATTAA-GCTCTGC-ACAAACTTCAAAATGTGATCTAAAA-TCACTCCAAGATGTACTACCATCAAA-TGTTGCAGGCTTAATAAAATNATGCCTTTTGGTCTACCATGCGAGTTTTATGTGCAGTATTNNCTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTG-TCGGCGTTCTGTGTTGCGCTAAATCTGACTGAC--CTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGTGATATTT------TCA-----------CGAGTAAT-CAT-ATCA--------TTAAAATNNGACNCGCAAAAACGGCTAACNACTTGGCNANCAAAATTCAAAAAAGTCATACATTTAANGANCGTA-CACCGCCGCCACCAAATAATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTCGCTCAATCACTGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACAAAANAGACAGCATATATATATAAAG--AGCTTCCCTAAT-AA--TAAAC-A-GTACTAGAGGGCA-GGTCGGCTC--TA-TTCGGGCCACT-ATCCCC-AGCA-----C--TAT-CTATTTTCCC-TGACAA--TGTC-AGTAACTATGG--T-T-------AACCACC----CTGG-TA-A--N--CCNGTAC-AAGAC-A---AAC-GAAA--TAG--CT--TCGGCT--C-TA-TTC-GG-CCA-CT-A-----T-TCA-ACTT----A--TCCTAT-CACTTC-CTTTATTATTCCCTTNCTGTC--TTAAATT-AT-TACCTGTTGCTG--CTNTGAGCTTCG-ACCGTAGAGTGATCTCAAGACTCCAG-A-T-CC---C--GGTTT-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTCCTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCAAT-TACC-C-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|1 : TTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCTA--C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGCCACAA-CTTCAAAATGTGATCTAAAAATCACTC-AAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATGC--TTTGGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTTG-CTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATC------TAATTCTA--TTCTTAACATTTGTATCTCT-CCTCCAGAA-TGATATTT-------CA-----------CGAATAATTCAT-ATAA--------T-AAAATTAGACAC-CA----TGGCTA-CAATTTGACAAACAAAATTCAAAGAAG----------------CGTA-CACCGCTGCCAC-AAACAATGTAACGT-TCTATGAGT--CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAAAGCCAGCATACATATATAAAG--AGCTTCCCTAAT-AAAATAAAC-A-GTACTAGAGGGCA-G-TCGGCTC--TA-TTCGGGCCACT-ATCCCC-AGCA-----C--TAT-CTATTTTCCC-TGACAA--TGTC-AGTAACTATGG--T-T-------AACCACC----CTGG-TA-A--G--CTAGTAT-AAGAT-A---AAT-GAAA--TAG--CT--TCGGCT--C-TA-TTC-GG-CCA-CT-C-----T-TCA-ACTT----A--TCCTAT-CACTTC-CTTTATTATTCCCTTTCTGTC--TTATATT-AT-TACCTGTTGCTG--CTTCGAGCTTCG-ACCGTAAAGTGATCTCAAGACTC--A-A-T-CC---C--GGTTT-ATATA-CCATTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACCGCCGGGTT--AGTCTATC-TTTATTAT--GTCCTTATCATTAAAGTTACAT----TGAACAATTGTATT-GATCAATATA-C-C-TATCATTATAGTC--TTATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|10 : ctTACTGGGAAACAAGGTCGGCTC--CT-TTTCGGCCGCT-AACCCT--GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGCC-AGTACCGGTAG--CCT-------AAATAC------TGGACACA--C--CTTATACCAAAAT-A---AAC-GAA---CAG--CT--TCAGCT--C-TA-TTCAAG-CCA-C--------C-TGA-A--------------AT-CACTTC-Ca
gi|11 : ATTTTCCC-TGACAA--TGTC-AGTAACTATGG--T-
gi|11 : -ACCT----A--TCTTTT-TACTTC-CTTTATTATTCCCTTTCTGTC--TTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcacctatctttttacttcctttattattccctttctgtctta
gi|12 : attttccctgacaatgtcagtaactatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcAATGTAACATGTCTATGATGT-CAAC-GC--TT---AATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----A------G---ATTT
gi|13 : tattgttggtaT--CAACCACTGGCAGATTTCCCAA-CACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|14 : CCTTACTGTC--TTAAATT-AT-TACCTGTTTCTG--CTTTGAGCTTCA-ACCGTAGAAT
gi|15 : -ACTT----A--TCCTAT-TACTTC-TTTTATTATTCCCTTTCTGTC--TTAAATT-AT-TAca
gi|16 : tcTTAATAAAATTATGC-TTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|17 : CGTA-CATCGCTGCCACCAAATAATGTAACGTGTCTAT
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGC
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTG-TCGGCGTTCTGTGTTGCGCTAAATCTGACTGAC--CTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGTGATATTT------TCA-----------CGAGTAAT-CAT-ATCA--------TTAAAATTTGACCC-C----ATGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACA---AAGAAGCGTACCACCGCTGCCACCAAATAATGTAACGTGTCTATGAGTT-C-------------ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----A------T---ATTTATA-TTGTTAG-----------CCCTAC
gi|2 : CGTATATATATAAAGCGAG-TTCCCTAAT-AAA-TAAAC-A-GTACTAG--GGCA-GGTCGGCTC--TA-TTCGGGCCACT-ATCCCC-AGCA-----C--TA---TA-TTTCCC-TGACAA--TGTC-AGTAACTATGG--T-T-------AACCACC----CTGG-TA-AAGC--CTAGTAC-AAGTC-A---AAT-GAAA--TAG--CT--TTGGCT--CTTA-TCG-GG-CCA-CTAA-----T-TC--ATTT----AT-TCCTAT-AACTTC-CTTTATTATTTCCTAACTGTT--CTAATTT-ACAAACCTGTTGCTG--CTATGAGCTTCG-ACCGTAGAGTGATCTCAAGACTCCAG-A-TCCC---C--GGTTT-ATATA-CCCT--G--GGCG-TTCCA-TTCAA-A-GGGGTGACCGCCGGGTT--AGTCTATC-TTTATTATA-GTCCTTATCATTAAAGTTACAT----TGAAC-ATGAT-TT-GATTCAT-TACC-C-TATCATTATAGTCCTTTATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACATgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|3 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctaTAACGTGTCTATGAGTTTCAAC-GCATTT---ATTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAA------TTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTACAAA---GACA---TATATATATAAAG--AGCTTCCCTA-------TAAAT-ACGTACTAG-GGGCA-GGTCGGCTC--TA-TTCGGGCCAAT-ATACC--AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGTC-AGTAA-TATGG--T-T-------ACCAACT----CTGG-TA-A--GA-CTAGTCA-AAGACTA---AAT-GAAAACTAG---T--TCGGCT--C-TA-TTC-GGGCCAACT-AA----C-TCA---CT----A--TCTTTT-TACTTCTCTTTATTATTCC-TTTCTGTCACTTAAATT-AT-TACCTGTTGCTGTGCTTTGAGCTTCG-ACCGTAAAGTGATCTCAAGCCTCCAG-A-T-TCCAAC--GGTTTAATATA-CCT------GCCG-TTTCATTTCAATAGGGGGTGACG--CGGGTT--AGT-TATCTTTTATTAT--GTCCTTTTCATTAAAGTTACCTGTCATG-AC-A-TGTATT-GATCAAT-TACC-TATATCATTATAGT---TTATCTTG-AAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|4 : GAGTTGAATGCCTT-TGAAATCATTGTTTA--TCTACATTTCTAACTTTTCAATTTCTTGTTCCAAATTTGAAATTTCAAATGTCAAACCATCCATGTGACTACT-CATTGTCAAACTTTACTTAAAATAAAACACGCAAAAACGGCTA-CCACT--GCCACCAAAATT--------------ATTTAATGACTTTA-TCCTGTCGCCA--AACCAATATAA--------TGAATT-CGACCAC--TTTTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----A------G---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATACAAAACAGATGACCAACA-ACTTA------GCTTCCA-AAC-AAC-TAGAC-AAGCAACAGAGA-CA-GGTCGGCTC--TA-TTCGGGCCACT-ATCTCT-GTCA-----CAGTAC-CTA--TTCCC-TAACAA--AATT-AGT-ACCATGGCCT-TGGAC---GACCACCAAGAATGC-TA-A--C--CCTATAT-ACGGT-AATCAACAGAGA--CAG---G--TCGGCT--C-TA-TTCGGG-TCA-CT-ATCTCTT-TTACACCT----ATTTCCTAT-CAt
gi|5 : TGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AGATTTAT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTACAAAA-AGACAG--TATATAAATAAAT--GACTCCCCTAAT-AA--TAAACCA-GTACTAG--GGCA-GGTCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--T-T-------TACCACC-----TGG-TA-A--G--CCTGTA----GAC-A---ATG-AAAA--TAGACTT--TCGGCTTTC-TA-TTC-GGGCCA-CT-AAA---T-TCA--CTTTTATA--TCCTATGCACTTC-CTTTATT-TTCCCTTTCTGT---TTATATTGAT---CCAGTTGCTGG-CTATGAGCTTCGGACCGTAGAGTGAT-TCAA--CTCCAGGA-T-CC---C--GAT---ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGTTGACGGCCGGATT--AGTCTATC-TTTATTATA-GTCTTTATCATatgcttgtcactaatgccaca
gi|6 : gtAA-TTTA---AATGGACAG--TATAGATATGAAG--ATGTTCCCTAATGAA--TTAAC-A-GTACTGGAGA-CA-GGTCGGCTC--TA-TTCGGGCCACT-AAGACC-AGTA-----C--CAT-CTATTTCCCCCTGATAT--TGCC-ATTT-CTTTGG--T-TTTTGATTAACAACC----TTGG-TA-A--T--CCCAT-----------------------TAT--CTAATCTGTT--C-TT-TTCAGG-TCA-CT-A-----AATCA--CCT----A--TTCTA----CTTC-CTTGATCACCCCTTTACTGCC--ATAAATT-CT-TACCTGTTTACA--CTTTAAATTTTG-ATCTCAGAATGACTCCGATACTGCAG-GTT-CT---C--GGTTA-ATTTA-CCCCTGG--GGTG-TTCTA-TT----AAGGGGTGG----CAGGTT--ATTTCACT-TTTAGTATA-GTCCTTCTTATCA----TATA-----------GTTTCATC-GATC-AT-TACCAT-TAT-ATTATAGTA---TGTCTAT-CAAATGT-A-AAAC-AATGAA---TATTACA
gi|7 : ----CTGG-TA-A--AGCCTAGTAC-AAGAC-A---AAT-AAAA--TAG--CT--TCGGCT--C-TAATTC-GG-CCA-CT-A-----T-TCA-ATTT-------TCTTATAGATTCC-CTTTATTATTTCCTAACTGTC--CTTAATT-TC-AACCTGTTGCTG--CTATGAGCTTCG-A-CGTAGTGTGATCTCAAGACTCCAG-A-T-CC---CCAGATTT-AATTACCCCTTGGGAGACGTTTCTA-TTCAA-A--GGGTGACGGCCGGGTTTAAGTCTATC-TTT-TAATACGTCCTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCAT-TACC-C-TATCCTTATAGT---TTATGTTT-AAAAT
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAA-CACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATTAA-GCTCTGC-ACAAACTTCAAAATGTGATCTAAAA-TCACTCCAAGATGTACTACCATCAAA-TGTTGCAGGCTTAATAAAATGATGCC-TTTGGTCTACCATGCGAG-TTTATGTGCAGTATTa
gi|9 : TGCTG--CTATGAGCTTCG-ACCGAAGAGTGATCTCAAGACTCCAG-A-TCCC---C--GGTTT-ATATA-CCCTAGG--GACG-TTCTA-TTCAA-A-GGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTCTTTATCATTAAAGTTACAT----TGAAC-A-TGTATT-GATTCAT-TACC-C-TATCATTATAGTCT-TTATCTAT-AAAAT
Alignments
lowQualScore : 1 222 222 11 2222 1 1 1 1 1 1 1 1 1 1 1 1 1 11 11 333333 11 2222 99999999999999999999 1 1 44444444 33333333 1 8888888888888 11 111 333333 111 1 333333 111111111 33333333333 5555555555555 11 222 1111 22 11 11111111 11 11 3333333 1111 11111 111 111111 2 3333333333333333333333333 11 1 111 1 11 111 1111 222 1 1 1 111
lowQualScore : 5 000 000 88 7 7 8888 3 7 7 1 5 5 5 5 5 5 5 3 3 7 1 1 5 1 5 5 88 77 0 6 0 888888 7 88 7 6 2222 00000000000000000000 1 3 3 88888888 7 7 33333333 3 7 77777 1111111111111 33 2 2 8 0 6 1 6 99 111 555555 000 3 888888 555555555 8 88888888888 2 5555555555555 2 3 2 8 8 44 444 1 4444 2 6 22 6 6 6 2 00 1 5 77 5 5 5 55 77777777 55 3 5 66 5 00 11 0000000 0 0000 5 5 99999 1 444 5 888 99 0 66 222222 66 5 5 0 5 5 4444444444444444444444444 00 4 1 66 5 88 5 66 1 5 5 5 1 000 77 5 5 55 77 0 5 5 5 3 11 77 5 00 000 4444 6 7 3 6 6 6 6 666 6 0 2 0 0 777
lowQualScore : . ... ... .. . . .... . . . . . . . . . . . . . . . . . . . . .. .. . . . ...... . .. . . .... .................... . . . ........ . . ........ . . ..... ............. .. . . . . . . . .. ... ...... ... . ...... ......... . ........... . ............. . . . . . .. ... . .... . . .. . . . . .. . . .. . . . .. ........ .. . . .. . .. .. ....... . .... . . ..... . ... . ... .. . .. ...... .. . . . . . ......................... .. . . .. . .. . .. . . . . . ... .. . . .. .. . . . . . .. .. . .. ... .... . . . . . . . ... . . . . . ...
lowQualScore : 0 555 555 33 3 3 3333 3 3 3 0 5 0 5 5 0 5 5 3 3 3 0 0 5 0 0 0 00 55 7 7 7 333333 3 33 3 7 7777 00000000000000000000 0 3 3 33333333 3 3 77777777 3 3 33333 8888888888888 22 5 5 0 7 7 7 7 22 777 888888 888 3 333333 888888888 0 00000000000 5 0000000000000 5 2 5 0 0 00 999 7 2222 5 7 55 7 7 7 3 11 7 7 99 7 7 7 44 99999999 00 2 0 99 0 55 99 7777777 7 6666 0 0 88888 0 666 0 888 22 1 99 222222 99 0 0 0 0 0 4444444444444444444444444 33 4 0 11 0 66 0 99 0 0 7 7 4 000 99 7 7 33 99 4 7 7 7 7 44 99 7 77 000 2222 7 3 2 7 7 7 7 777 7 0 5 0 0 555
consensus : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAAT-CAT-ATCA--------TTAAAATTAGACAC-CAA---CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT-AA--TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-A--N--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TC-TA-TTCGGG-CCA-CT--A-----T-TCA-ACC----TA--TCCTAT-CACTTC-CTTTATTATTCCCTTNCTGTC--TTAAATT-AT-TACCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( family-2444 ) : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAAT-CAT-ATCA--------TTAAAATTAGACAC-CAA---CGGCT-ACAATTTGACAAACAAAATTCAAAGAAG------AAAGA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT-AA--TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-A--N--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TC-TA-TTC-GG-CCA-CT--A-----T-TCA-ACC----TA--TCCTAT-CACTTC-CTTTATTATTCCCTTNCTGTC--TTAAATT-AT-TACCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|1 : TTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCTA-C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGCCACAA-CTTCAAAATGTGATCTAAAAATCACTC-AAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTTG-CTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATC------TAATTCTA--TTCTTAACATTTGTATCTCT-CCTCCAGAA-T--GATATTT-------CA-----------CGAATAATTCAT-ATAA--------T-AAAATTAGACAC-CA----TGGCT-ACAATTTGACAAACAAAATTCAAAGAAG-------------CGTA-CACCGCTGCCAC-AAAC-AATGTAACGT-TCTATGAGT--CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAA-AGCCAGCATACATATATAAA-G--AGCTTCCCTAAT-AAAATAAA-C-A-GTACTAGAGGGCA-G-TCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-A--G--CTAGTA-TAAGAT-A---AAT-GAAA--TAG--CT--TCGGC--TC-TA-TTC-GG-CCA-CT--C-----T-TCA-ACT----TA--TCCTAT-CACTTC-CTTTATTATTCCCTTTCTGTC--TTATATT-AT-TACCTGTTGCT-G--CTTCGAGCTTC-GACCGTAAAGTGATCTCAAGACTC---AA-T-CC---C--GGTTT-ATATA-CCATTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACCGCCGGGTT--AGTCTATC-TTTATTAT--GTC---CTTATCATTAAAGTTACAT----TGAACAATTGTATT-GATCAATATA-CC-TATCATTATAGTC--TTATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|10 : ctTACTGGGAAACAAGGTCGGCT--CC-TTTTCGGCCGC-TAACC-CT-GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGC-CAGTACCGGTAGC-CT-------AA--ATA----CTGGACACA--C--CTTATACCAAAAT-A---AAC-G-AA--CAG--CT--TCAGC--TC-TA-TTCAAG-CCA-C---------C-TGA-A--------------AT-CACTTC-Ca
gi|11 : ATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T
gi|11 : -ACC----TA--TCTTTT-TACTTC-CTTTATTATTCCCTTTCTGTC--TTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcacctatctttttacttcctttattattccctttctgtctta
gi|12 : attttccctgacaatgtcagtaactatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctc-AATGTAACATGTCTATGATGT-CAAC-GC--TT---AATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----AG---ATTT
gi|13 : tattgttggtaT--CAACCACTGGCAGATTTCCCAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|14 : CCTTACTGTC--TTAAATT-AT-TACCTGTTTCT-G--CTTTGAGCTTC-AACCGTAGAAT
gi|15 : -ACT----TA--TCCTAT-TACTTC-TTTTATTATTCCCTTTCTGTC--TTAAATT-AT-TAca
gi|16 : tcTTAATAAAATTATG-CTTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|17 : --CGTA-CATCGCTGCCACCAAAT-AATGTAACGTGTCTAT
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGC
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTT-GTCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGT--GATATTT------TCA-----------CGAGTAAT-CAT-ATCA--------TTAAAATTTGAC-C-CCA---TGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACAAAGAAGCGTACCACCGCTGCCACCAAAT-AATGTAACGTGTCTATGAGTT-C-------------ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTAC
gi|2 : -TATATATATAAA-GCGAG-TTCCCTAAT-AAA-TAAA-C-A-GTACTAG--GGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TA---TA-TTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AAGC--CTAGTA-CAAGTC-A---AAT-GAAA--TAG--CT--TTGGC--TCTTA-TCG-GG-CCA-CTA-A-----T-TC--ATT----TAT-TCCTAT-AACTTC-CTTTATTATTTCCTAACTGTT--CTAATTT-ACAAACCTGTTGCT-G--CTATGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-TCCC---C--GGTTT-ATATA-CCCT--G--GGCG-TTCCA-TTCAA-A-GGGGTGACCGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATGAT-TT-GATTCAT-TACCC-TATCATTATAGTCCTTTATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACATgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|3 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctacgTAACGTGTCTATGAGTTTCAAC-GCATTT---ATTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAATTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTAC-AAA---GACA---TATATATATAAA-G--AGCTTCCCTA-------TAAA-T-ACGTACTAG-GGGCA-GGTCGGCT--CT-ATTCGGGCCAA-TATAC-C-AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGT-CAGTAA-TATGG--TT-------ACCAACT----CTGG-TA-A--GA-CTAGTC-AAAGACTA---AAT-GAAAACTAG---T--TCGGC--TC-TA-TTC-GGGCCAACT--AA----C-TCA---C----TA--TCTTTT-TACTTCTCTTTATTATTCC-TTTCTGTCACTTAAATT-AT-TACCTGTTGCT-GTGCTTTGAGCTTC-GACCGTAAAGTGATCTCAAGCCTCCA-GA-T-TCCAAC--GGTTTAATATA-CCT------GCCG-TTTCATTTCAATAGGGGGTGACG--CGGGTT--AGT-TATCTTTTATTAT--GTC---CTTTTCATTAAAGTTACCTGTCATG-AC-A-TGTATT-GATCAAT-TACCTATATCATTATAGT---TTATCTTG-AAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|4 : GAGTTGAATGCCTT-TGAAATCATTGTTTA--TCTACATTTCTAACTTTTCAATTTCTTGTTCCA-AA-TTTGAAATTTCAAATGTCAAACCATCCATGTGACTACT-CATTGTCAAACTTTACTTAAAATAAAACACGCAAAAACGGCT-ACCACT--GCCACCAAAATT------ATTT----AATGA--CTT--TATC-CTGTCGCCAAACCAATATAA--------TGAATT-CGACCAC--TTTTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----AG---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATAC-AAAACAGATGAC-CA-----ACAACTT--AGCTTCCA-AAC-AAC-TAGA-CAA-GCAACAGA-GACA-GGTCGGCT--CT-ATTCGGGCCAC-TATCT-CTGTCA-----CAGTAC-CTA--TTCCC-TAACAA--AAT-TAGT-ACCATGGCCTTGGAC---GACCACCAAGAATGC-TA-A--C--CCTATA-TACGGT-AATCAACAGAGA--CAG---G--TCGGC--TC-TA-TTCGGG-TCA-CT--ATCTCTT-TTACACC----TATTTCCTAT-CAt
gi|5 : TGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTAC-AAAA-AGACAG--TATATAAATAAA-T--GACTCCCCTAAT-AA--TAAACC-A-GTACT--AGGGCA-GGTCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--TT-------TACCA-C----CTGG-TA-A--G--CCTGT----AGAC-A---ATG-AAAA--TAGACTT--TCGGCTTTC-TA-TTCGGG-CCA-CTAAA-----T-TC--ACTTTTATA--TCCTATGCACTTC-CTTTATT-TTCCCTTTCTGT---TTATATTGAT---CCAGTTGCTGG--CTATGAGCTTCGGACCGTAGAGTGAT-TCA--ACTCCAGGA-T-CC---C--GA--T-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGTTGACGGCCGGATT--AGTCTATC-TTTATTATA-GTC---TTTATCATatgcttgtcactaatgccaca
gi|6 : gtAA-TTTA---AAT-GGACAG--TATAGATATGAA-G--ATGTTCCCTAATGAA--TTAA-C-A-GTACTGGAGA-CA-GGTCGGCT--CT-ATTCGGGCCAC-TAAGA-CCAGTA-----C--CAT-CTATTTCCCCCTGATAT--TGC-CATTT-CTTTGG--TTTTTGATTAACAACC----TTGG-TA-A--T--CCCAT-----------------------TAT--CTAATCTGT--TC-TT-TTCAGG-TCA-CT--A-----AATCA--CC----TA--TTCTA----CTTC-CTTGATCACCCCTTTACTGCC--ATAAATT-CT-TACCTGTTTAC-A--CTTTAAATTTT-GATCTCAGAATGACTCCGATACTGCA-GGTT-CT---C--GGTTA-ATTTA-CCCCTGG--GGTG-TTCTA-TT----AAGGGGTGG----CAGGTT--ATTTCACT-TTTAGTATA-GTCCTTCTTATCA-TATAGTTTCAT----CGATC-ATTA--------CCAT-TA-------TATTATAGTA---TGTCTAT-CAAATGT-A-AAAC-AATGAA---TATTACA
gi|7 : ----CTGG-TA-A--AGCCTAGTA-CAAGAC-A---AAT-AAAA--TAG--CT--TCGGC--TC-TAATTC-GG-CCA-CT--A-----T-TCA-ATT----T---TCTTATAGATTCC-CTTTATTATTTCCTAACTGTC--CTTAATT-TC-AACCTGTTGCT-G--CTATGAGCTTC-GA-CGTAGTGTGATCTCAAGACTCCA-GA-T-CC---CCAGATTT-AATTACCCCTTGGGAGACGTTTCTA-TTCAA-A--GGGTGACGGCCGGGTTTAAGTCTATC-TTT-TAATACGTC---CTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCAT-TACCC-TATCCTTATAGT---TTATGTTT-AAAAT
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTG-CACAAACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATGATGCCTTT-GGTCTACCATGCGAG-TTTATGTGCAGTATTa
gi|9 : TGCT-G--CTATGAGCTTC-GACCGAAGAGTGATCTCAAGACTCCA-GA-TCCC---C--GGTTT-ATATA-CCCTAGG--GACG-TTCTA-TTCAA-A-GGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---TTTATCATTAAAGTTACAT----TGAAC-A-TGTATT-GATTCAT-TACCC-TATCATTATAGTCT-TTATCTAT-AAAAT
Alignments
lowQualScore : 1 222 222 11 2222 1 1 1 1 1 1 1 1 1 1 1 1 1 11 11 333333 11 2222 77777777777777777777 1 1 555555555 33333333 1 66666666666666 11 111 333333 111 1 333333 111111111 33333333333 5555555555555 11 222 1111 11111 11 11111111 2222222 111 111 111111 333333333333333333333 11111111 22222222222 111 11 11 111 1111 222 1 1 1 111
lowQualScore : 5 000 000 88 7 7 8888 3 7 7 1 5 5 5 5 5 5 5 3 3 7 1 1 5 1 5 5 88 77 0 6 0 888888 7 88 7 6 2222 7 33333333333333333333 1 3 3 555555555 7 33333333 3 7 77777 66666666666666 33 2 2 8 0 3 6 1 6 99 111 555555 000 3 888888 555555555 8 88888888888 2 5555555555555 2 3 2 8 8 44 444 1 4444 2 99999 6 6 6 2 00 1 5 77 5 5 5 55 77777777 999 5 66 5 00 66 5 6666666 9999 4 4 777 1 333 4 8888888 666 111111 66 4 5 4 444444444444444444444 55 4 44444444 4 4 33333333333 1 66 5 3 5 5 66 1 5 5 5 5 000 33 5 5 55 77 0 5 5 5 6 0 11 77 5 00 000 4444 6 7 3 6 6 6 6 666 6 0 2 0 0 777
lowQualScore : . ... ... .. . . .... . . . . . . . . . . . . . . . . . . . . .. .. . . . ...... . .. . . .... . .................... . . . ......... . ........ . . ..... .............. .. . . . . . . . . .. ... ...... ... . ...... ......... . ........... . ............. . . . . . .. ... . .... . ..... . . . . .. . . .. . . . .. ........ ... . .. . .. .. . ....... .... . . ... . ... . ....... ... ...... .. . . . ..................... .. . ........ . . ........... . .. . . . . .. . . . . . ... .. . . .. .. . . . . . . .. .. . .. ... .... . . . . . . . ... . . . . . ...
lowQualScore : 0 555 555 33 3 3 3333 3 3 3 0 5 0 5 5 0 5 5 3 3 3 0 0 5 0 0 0 00 55 7 7 7 333333 3 33 3 7 7777 3 77777777777777777777 0 3 3 777777777 3 77777777 3 3 33333 77777777777777 22 5 5 0 7 2 7 7 7 22 777 888888 888 3 333333 888888888 0 00000000000 5 0000000000000 5 2 5 0 0 00 999 7 2222 5 22222 7 7 7 3 11 7 7 99 7 7 7 44 99999999 777 0 99 0 55 99 0 9999999 4444 4 4 777 0 222 4 6666666 333 111111 11 4 9 4 444444444444444444444 55 0 66666666 4 4 88888888888 0 11 0 6 0 0 99 0 0 7 7 7 000 66 7 7 33 99 4 7 7 7 6 7 44 99 7 77 000 2222 7 3 2 7 7 7 7 777 7 0 5 0 0 555
consensus : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-C-A---CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AN--CTNGTAC-AAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( family-2444 ) : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CAA---CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AN--CTNGTAC-AAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACC----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|1 : TTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCTA-C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGCCACAA-CTTCAAAATGTGATCTAAAAATCACTC-AAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTT-GCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATC------TAATTCTA--TTCTTAACATTTGTATCTC-TCCTCCAGAA-T--GATA-TT------TCA-----------CGAATAATTCAT-ATAA---------TAAAATTAGACAC-C-A---TGGCT-ACAATTTGACAAACAAAATTCAAAGAAG--------------CGTA-CACCGCTGCCA-CAAAC-AATGTAACGT-TCTATGAG-T-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAA-AGCCAGCATACATATATAAA-G--AGCTTCCCTAATAAAA-TAAA-C-A-GTACTAGAGGGCA--GTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AG--CTAGTAT-AAGAT-A---AAT-GAAA--TAG--CT--TCGGC--TCT-ATTC-GGCCA-CT--C-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTTCTGTC--TTATATT-ATTA-CCTGTTGCT-G--CTTCGAGCTTC-GACCGTAAAGTGATCTCAAGACTC---AA-T-CC---C--GGTTT-ATATA-CCATTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACCGCCGGGTT--AGTCTATC-TTTATTAT--GTC---CTTATCATTAAAGTTACAT----TGAACAATTGTATT-GATCAATATA-CC-TATCATTATAGTC--TTATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|10 : ctTACTGGGAAACAAGGTCGGCT--CC-TTTTCGGCCGC-TAACC-CT-GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGC-CAGTACCGGTAG--CCT-------AAATAC------TGGACACAC--CTTATACCAAAAT-A---AAC-GAA---CAG--CT--TCAGC--TCT-ATTCAAGCCA-C---------C-TGA-A---------------A-----T-CACTT-C-Ca
gi|11 : ATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-N-------NNNNNNN----NNNN-NN-NN--NNNNNNN-NNNNN-N---NNN-NNNN--NNN--NN--NNNNN--NNN-NNNNNNNNNN-NN--N-----N-NNN-NNN----NN--N-NNNNNNNNCT-CACCTAT-CTTTTTACTTCCTTTATTATTCCCTTTCTGTC--TTA
gi|12 : -AATGTAACATGTCTATGATGT-CAAC-GC--TT---AATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----AG---ATTT
gi|13 : tattgttggtaT--CAACCACTGGCAGATTTCCCAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|14 : CCTTACTGTC--TTAAATT-ATTA-CCTGTTTCT-G--CTTTGAGCTTC-AACCGTAGAAT
gi|15 : -ACT----TA--T-CCTA-----T-TACTT-C-TTTT-----------ATTATTCCCTTTCTGTC--TTAAATT-ATTA-ca
gi|16 : tcTTAATAAAATTATG-CTTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|17 : --CGTA-CATCGCTGCCACCAAAT-AATGTAACGTGTCTAT
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGC
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTT-GTCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGT--GATATTT------TCA-----------CGAGTAA-TCAT-ATCA--------TTAAAATTTGAC-C-CCA---TGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACAAA-GAAGCGTACCACCGCTGCCACCAAAT-AATGTAACGTGTCTATGAGTT-C-------------ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTAC
gi|2 : -TATATATATAAA-GCGAG-TTCCCTAAT--AAATAAA-C-A-GTACTAG--GGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT---ATTT-CCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AAGCCTAGTAC-AAGTC-A---AAT-GAAA--TAG--CT--TTGGC--TCT-TATCGGGCCA-CT--AA----T-TCA--TT----TA--TTCCTA-----T-AACTT-C-CTTT-----------ATTATTTCCTAACTGTT--CTAATTT-ACAAACCTGTTGCT-G--CTATGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---CC-GGTTT-ATATA-CCCT--G--GGCG-TTCCA-TTCAA-AGGGG-TGACCGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATGAT-TT-GATTCAT-TACCC-TATCATTATAGTCCTTTATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACATgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|3 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctacgTAACGTGTCTATGAGTTTCAAC-GCATTT---ATTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAATTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTAC-AAA---GACA---TATATATATAAA-G--AGCTTCCCTA-------TAAA-T-ACGTACTAG-GGGCA-GGTCGGCT--CT-ATTCGGGCCAA-TATAC-C-AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGT-CAGTAA-TATGG--T-T-------ACCAACT----CTGG-TA-AGA-CTAGTCA-AAGACTA---AAT-GAAAACTAG---T--TCGGC--TCT-ATTCGGGCCAACT--AA----C-TCA---C----TA--T-CTTT-----T-TACTT-CTCTTT-----------ATTATTCC-TTTCTGTCACTTAAATT-ATTA-CCTGTTGCT-GTGCTTTGAGCTTC-GACCGTAAAGTGATCTCAAGCCTCCA-GA-T-TCCAAC--GGTTTAATATA-CCT------GCCG-TTTCATTTCAATAGGGGGTGACG--CGGGTT--AGT-TATCTTTTATTAT--GTC---CTTTTCATTAAAGTTACCTGTCATG-AC-A-TGTATT-GATCAAT-TACCTATATCATTATAGT---TTATCTTG-AAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|4 : GAGTTGAATGCCTT-TGAAATCATTGTTTA--TCTACATTTCTAACTTTTCAATTTCTTGTTCCA-AA-TTTGAAATTTCAAATGTCAAACCATCCATGTGACTAC-TCATTGTCAAACTTTACTTAAAATAAAACACGCAAAAACGGCT-ACCACT--GCCACCAAAATT------ATTT-----AATGA--CTT--TATC-CTGTCGCCAAACCAATATAA--------TGAATT-CGACCAC--TTTTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----AG---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATAC-AAAACAGATGAC-CA-----ACAACTT--AGCTTCCA-AAC--AACTAGA-CAA-GCAACAGA-GACA-GGTCGGCT--CT-ATTCGGGCCAC-TATCT-CTGTCA-----CAGTAC-CTA--TTCCC-TAACAA--AAT-TAGT-ACCATGGCCT-TGGAC---GACCACCAAGAATGC-TA-AC--CCTATAT-ACGGT-AATCAACAGAGA--CAG---G--TCGGC--TCT-ATTCGGGTCA-CT--ATCTCTT-TTACACC----TATTT-CCTA-----T-CAt
gi|5 : TGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTAC-AAAA-AGACAG--TATATAAATAAA-T--GACTCCCCTAAT--AA-TAAACC-A-GTACT--AGGGCA-GGTCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--T-T-------TACCA-C----CTGG-TA-AG--CCTGT----AGAC-A---ATG-AAAA--TAGACTT--TCGGCTTTCT-ATTCGGGCCA-CTAAA-----T-TC--ACTTTTATA--T-CCTA-----TGCACTT-C-CTTT-----------ATT-TTCCCTTTCTGT---TTATATTGAT---CCAGTTGCTGG--CTATGAGCTTCGGACCGTAGAGTGAT-TCA--ACTCCAGGA-T-CC---C--GA--T-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGTTGACGGCCGGATT--AGTCTATC-TTTATTATA-GTC---TTTATCATatgcttgtcactaatgccaca
gi|6 : gtAA-TTTA---AAT-GGACAG--TATAGATATGAA-G--ATGTTCCCTAATG-AA-TTAA-C-A-GTACTGGAGA-CA-GGTCGGCT--CT-ATTCGGGCCAC-TAAGA-CCAGTA-----C--CAT-CTATTTCCCCCTGATAT--TGC-CATTT-CTTTGG--T-TTTTGATTAACAACC----TTGG-TA-AT--CCCAT-----------------------TAT--CTAATCTGT--TCT-TTTCAGGTCA-CT--A-----AATCA--CC----TA--T-TCTA---------CTT-C-CTTG-----------ATCACCCCTTTACTGCC--ATAAATT-CTTA-CCTGTTTAC-A--CTTTAAATTTT-GATCTCAGAATGACTCCGATACTGCA-GGTT-CT---C--GGTTA-ATTTA-CCCCTGG--GGTG-TTCTA-TT----AAGGGGTGG----CAGGTT--ATTTCACT-TTTAGTATA-GTCCTTCTTATCA-TATAGTTTCAT----CGATC-ATTA--------CCAT-TA-------TATTATAGTA---TGTCTAT-CAAATGT-A-AAAC-AATGAA---TATTACA
gi|7 : ----CTGG-TA-AAGCCTAGTAC-AAGAC-A---AAT-AAAA--TAG--CT--TCGGC--TCTAATTC-GGCCA-CT--A-----T-TCA-ATT----T---T-CTTA-----TAGATTC-C-CTTT-----------ATTATTTCCTAACTGTC--CTTAATT-TCAA-CCTGTTGCT-G--CTATGAGCTTC-GA-CGTAGTGTGATCTCAAGACTCCA-GA-T-CC---CCAGATTT-AATTACCCCTTGGGAGACGTTTCTA-TTCAA-A--GGGTGACGGCCGGGTTTAAGTCTATC-TTT-TAATACGTC---CTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCAT-TACCC-TATCCTTATAGT---TTATGTTT-AAAAT
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTG-CACAAACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATGATGCCTTT-GGTCTACCATGCGAG-TTTATGTGCAGTATTa
gi|9 : TGCT-G--CTATGAGCTTC-GACCGAAGAGTGATCTCAAGACTCCA-GA-TCCC---C--GGTTT-ATATA-CCCTAGG--GACG-TTCTA-TTCAA-A-GGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---TTTATCATTAAAGTTACAT----TGAAC-A-TGTATT-GATTCAT-TACCC-TATCATTATAGTCT-TTATCTAT-AAAAT
Alignments
lowQualScore : 1 222 222 11 2222 1 1 1 1 1 1 1 1 1 1 1 1 1 11 11 333333 11 2222 77777777777777777777 1 1 555555555 1 22222 1 66666666666666 11 111 333333 111 1 333333 111111111 33333333333 5555555555555 11 222 1111 11111 11 11111111 11 2222222 111 111 111111 333333333333333333333 11111111 22222222222 111 11 11 111 1111 222 1 1 1 111
lowQualScore : 5 000 000 88 7 7 8888 3 7 7 1 5 5 5 5 5 5 5 3 3 7 1 1 5 1 5 5 88 77 0 6 0 888888 7 88 7 6 2222 7 33333333333333333333 1 3 3 555555555 3 99999 3 7 77777 66666666666666 33 2 2 8 0 3 6 1 6 99 111 555555 000 3 888888 555555555 8 88888888888 2 5555555555555 2 3 2 8 8 44 444 1 4444 2 99999 6 6 6 2 00 1 5 77 5 5 5 55 77777777 999 5 66 5 00 11 6666666 0 9999 4 4 777 1 333 4 8888888 0 66 111111 66 4 5 4 111111111111111111111 55 4 44444444 4 4 33333333333 1 66 5 3 5 5 66 1 5 5 5 5 000 33 5 5 55 77 0 5 5 5 6 0 11 77 5 00 000 4444 6 7 3 6 6 6 6 666 6 0 2 0 0 777
lowQualScore : . ... ... .. . . .... . . . . . . . . . . . . . . . . . . . . .. .. . . . ...... . .. . . .... . .................... . . . ......... . ..... . . ..... .............. .. . . . . . . . . .. ... ...... ... . ...... ......... . ........... . ............. . . . . . .. ... . .... . ..... . . . . .. . . .. . . . .. ........ ... . .. . .. .. ....... . .... . . ... . ... . ....... . .. ...... .. . . . ..................... .. . ........ . . ........... . .. . . . . .. . . . . . ... .. . . .. .. . . . . . . .. .. . .. ... .... . . . . . . . ... . . . . . ...
lowQualScore : 0 555 555 33 3 3 3333 3 3 3 0 5 0 5 5 0 5 5 3 3 3 0 0 5 0 0 0 00 55 7 7 7 333333 3 33 3 7 7777 3 77777777777777777777 0 3 3 777777777 3 00000 3 3 33333 77777777777777 22 5 5 0 7 2 7 7 7 22 777 888888 888 3 333333 888888888 0 00000000000 5 0000000000000 5 2 5 0 0 00 999 7 2222 5 22222 7 7 7 3 11 7 7 99 7 7 7 44 99999999 777 0 99 0 55 99 9999999 8 4444 4 4 777 0 222 4 6666666 2 11 111111 11 4 9 4 777777777777777777777 55 0 66666666 4 4 88888888888 0 11 0 6 0 0 99 0 0 7 7 7 000 66 7 7 33 99 4 7 7 7 6 7 44 99 7 77 000 2222 7 3 2 7 7 7 7 777 7 0 5 0 0 555
consensus : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AN--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( family-2444 ) : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AN--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|1 : TTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCTA-C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGCCACAA-CTTCAAAATGTGATCTAAAAATCACTC-AAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTT-GCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATC------TAATTCTA--TTCTTAACATTTGTATCTC-TCCTCCAGAA-T--GATA-TT------TCA-----------CGAATAATTCAT-ATAA---------TAAAATTAGACAC-CA----TGGCT-ACAATTTGACAAACAAAATTCAAAGAAG--------------CGTA-CACCGCTGCCA-CAAAC-AATGTAACGT-TCTATGAG-T-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAA-AGCCAGCATACATATATAAA-G--AGCTTCCCTAATAAAA-TAAA-C-A-GTACTAGAGGGCA--GTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AG--CTAGTA-TAAGAT-A---AAT-GAAA--TAG--CT--TCGGC--TCT-ATTC-GGCCA-CT--C-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTTCTGTC--TTATATT-ATTA-CCTGTTGCT-G--CTTCGAGCTTC-GACCGTAAAGTGATCTCAAGACTC---AA-T-CC---C--GGTTT-ATATA-CCATTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACCGCCGGGTT--AGTCTATC-TTTATTAT--GTC---CTTATCATTAAAGTTACAT----TGAACAATTGTATT-GATCAATATA-CC-TATCATTATAGTC--TTATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|10 : ctTACTGGGAAACAAGGTCGGCT--CC-TTTTCGGCCGC-TAACC-CT-GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGC-CAGTACCGGTAGC-CT-------AA--ATA----CTGGACACAC--CTTATACCAAAAT-A---AAC-G-AA--CAG--CT--TCAGC--TCT-ATTCAAGCCA-C---------C-TGA-A---------------A-----T-CACTT-C-Ca
gi|11 : ATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TN-------NNNNNNN----NNNN-NN-NN--NNNNNN-NNNNNN-N---NNN-NNNN--NNN--NN--NNNNN--NNN-NNNNNNNNNN-NN--N-----N-NNN-NNN----NN--N-NNNNNNNNCT-CACCTAT-CTTTTTACTTCCTTTATTATTCCCTTTCTGTC--TTA
gi|12 : -AATGTAACATGTCTATGATGT-CAAC-GC--TT---AATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----AG---ATTT
gi|13 : tattgttggtaT--CAACCACTGGCAGATTTCCCAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|14 : CCTTACTGTC--TTAAATT-ATTA-CCTGTTTCT-G--CTTTGAGCTTC-AACCGTAGAAT
gi|15 : -ACT----TA--T-CCTA-----T-TACTT-C-TTTT-----------ATTATTCCCTTTCTGTC--TTAAATT-ATTA-ca
gi|16 : tcTTAATAAAATTATG-CTTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|17 : --CGTA-CATCGCTGCCACCAAAT-AATGTAACGTGTCTAT
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGC
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTT-GTCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGT--GATATTT------TCA-----------CGAGTAA-TCAT-ATCA--------TTAAAATTTGACCC-CA----TGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACAAA-GAAGCGTACCACCGCTGCCACCAAAT-AATGTAACGTGTCTATGAGTT-C-------------ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTAC
gi|2 : -TATATATATAAA-GCGAG-TTCCCTAAT--AAATAAA-C-A-GTACTAG--GGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT---ATTT-CCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AAGCCTAGTA-CAAGTC-A---AAT-GAAA--TAG--CT--TTGGC--TCT-TATCGGGCCA-CT--AA----T-TCA--TT----TA--TTCCTA-----T-AACTT-C-CTTT-----------ATTATTTCCTAACTGTT--CTAATTT-ACAAACCTGTTGCT-G--CTATGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---CC-GGTTT-ATATA-CCCT--G--GGCG-TTCCA-TTCAA-AGGGG-TGACCGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATGAT-TT-GATTCAT-TACCC-TATCATTATAGTCCTTTATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACATgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|3 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctacgTAACGTGTCTATGAGTTTCAAC-GCATTT---ATTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAATTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTAC-AAA---GACA---TATATATATAAA-G--AGCTTCCCTA-------TAAA-T-ACGTACTAG-GGGCA-GGTCGGCT--CT-ATTCGGGCCAA-TATAC-C-AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGT-CAGTAA-TATGG--TT-------ACCAACT----CTGG-TA-AGA-CTAGTC-AAAGACTA---AAT-GAAAACTAG---T--TCGGC--TCT-ATTCGGGCCAACT--AA----C-TCA---C----TA--T-CTTT-----T-TACTT-CTCTTT-----------ATTATTCC-TTTCTGTCACTTAAATT-ATTA-CCTGTTGCT-GTGCTTTGAGCTTC-GACCGTAAAGTGATCTCAAGCCTCCA-GA-T-TCCAAC--GGTTTAATATA-CCT------GCCG-TTTCATTTCAATAGGGGGTGACG--CGGGTT--AGT-TATCTTTTATTAT--GTC---CTTTTCATTAAAGTTACCTGTCATG-AC-A-TGTATT-GATCAAT-TACCTATATCATTATAGT---TTATCTTG-AAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|4 : GAGTTGAATGCCTT-TGAAATCATTGTTTA--TCTACATTTCTAACTTTTCAATTTCTTGTTCCA-AA-TTTGAAATTTCAAATGTCAAACCATCCATGTGACTAC-TCATTGTCAAACTTTACTTAAAATAAAACACGCAAAAACGGCT-ACCACT--GCCACCAAAATT------ATTT-----AATGA--CTT--TATC-CTGTCGCCAAACCAATATAA--------TGAATT-CGACCAC--TTTTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----AG---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATAC-AAAACAGATGAC-CA-----ACAACTT--AGCTTCCA-AAC--AACTAGA-CAA-GCAACAGA-GACA-GGTCGGCT--CT-ATTCGGGCCAC-TATCT-CTGTCA-----CAGTAC-CTA--TTCCC-TAACAA--AAT-TAGT-ACCATGGCCTTGGAC---GACCACCAAGAATGC-TA-AC--CCTATA-TACGGT-AATCAACAGAGA--CAG---G--TCGGC--TCT-ATTCGGGTCA-CT--ATCTCTT-TTACACC----TATTT-CCTA-----T-CAt
gi|5 : TGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTAC-AAAA-AGACAG--TATATAAATAAA-T--GACTCCCCTAAT--AA-TAAACC-A-GTACT--AGGGCA-GGTCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--TT-------TACCA-C----CTGG-TA-AG--CCTGT----AGAC-A---ATG-AAAA--TAGACTT--TCGGCTTTCT-ATTCGGGCCA-CTAAA-----T-TC--ACTTTTATA--T-CCTA-----TGCACTT-C-CTTT-----------ATT-TTCCCTTTCTGT---TTATATTGAT---CCAGTTGCTGG--CTATGAGCTTCGGACCGTAGAGTGAT-TCA--ACTCCAGGA-T-CC---C--GA--T-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGTTGACGGCCGGATT--AGTCTATC-TTTATTATA-GTC---TTTATCATatgcttgtcactaatgccaca
gi|6 : gtAA-TTTA---AAT-GGACAG--TATAGATATGAA-G--ATGTTCCCTAATG-AA-TTAA-C-A-GTACTGGAGA-CA-GGTCGGCT--CT-ATTCGGGCCAC-TAAGA-CCAGTA-----C--CAT-CTATTTCCCCCTGATAT--TGC-CATTT-CTTTGG--TTTTTGATTAACAACC----TTGG-TA-AT--CCCAT-----------------------TAT--CTAATCTGT--TCT-TTTCAGGTCA-CT--A-----AATCA--CC----TA--T-TCTA---------CTT-C-CTTG-----------ATCACCCCTTTACTGCC--ATAAATT-CTTA-CCTGTTTAC-A--CTTTAAATTTT-GATCTCAGAATGACTCCGATACTGCA-GGTT-CT---C--GGTTA-ATTTA-CCCCTGG--GGTG-TTCTA-TT----AAGGGGTGG----CAGGTT--ATTTCACT-TTTAGTATA-GTCCTTCTTATCA-TATAGTTTCAT----CGATC-ATTA--------CCAT-TA-------TATTATAGTA---TGTCTAT-CAAATGT-A-AAAC-AATGAA---TATTACA
gi|7 : ----CTGG-TA-AAGCCTAGTA-CAAGAC-A---AAT-AAAA--TAG--CT--TCGGC--TCTAATTC-GGCCA-CT--A-----T-TCA-ATT----T---T-CTTA-----TAGATTC-C-CTTT-----------ATTATTTCCTAACTGTC--CTTAATT-TCAA-CCTGTTGCT-G--CTATGAGCTTC-GA-CGTAGTGTGATCTCAAGACTCCA-GA-T-CC---CCAGATTT-AATTACCCCTTGGGAGACGTTTCTA-TTCAA-A--GGGTGACGGCCGGGTTTAAGTCTATC-TTT-TAATACGTC---CTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCAT-TACCC-TATCCTTATAGT---TTATGTTT-AAAAT
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTG-CACAAACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATGATGCCTTT-GGTCTACCATGCGAG-TTTATGTGCAGTATTa
gi|9 : TGCT-G--CTATGAGCTTC-GACCGAAGAGTGATCTCAAGACTCCA-GA-TCCC---C--GGTTT-ATATA-CCCTAGG--GACG-TTCTA-TTCAA-A-GGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---TTTATCATTAAAGTTACAT----TGAAC-A-TGTATT-GATTCAT-TACCC-TATCATTATAGTCT-TTATCTAT-AAAAT
Alignments
lowQualScore : 1 222 222 11 2222 1 1 1 1 1 1 1 1 1 1 1 1 1 11 11 333333 11 2222 77777777777777777777 1 1 555555555 1 22222 1 66666666666666 11 111 333333 111 1 333333 111111111 33333333333 5555555555555 11 222 1111 11111 11 11111111 11 2222222 111 111 111111 333333333333333333333 11111111 22222222222 111 11 11 111 1111 222 1 1 1 111
lowQualScore : 5 000 000 88 7 7 8888 3 7 7 1 5 5 5 5 5 5 5 3 3 7 1 1 5 1 5 5 88 77 0 6 0 888888 7 88 7 6 2222 7 33333333333333333333 1 3 3 555555555 3 99999 3 7 77777 66666666666666 33 2 2 8 0 3 6 1 6 99 111 555555 000 3 888888 555555555 8 88888888888 2 5555555555555 2 3 2 8 8 44 444 1 4444 2 99999 6 6 6 2 00 1 5 77 5 5 5 55 77777777 999 5 66 5 00 11 6666666 0 9999 4 4 777 1 333 4 8888888 0 66 111111 66 4 5 4 111111111111111111111 55 4 44444444 4 4 33333333333 1 66 5 3 5 5 66 1 5 5 5 5 000 33 5 5 55 77 0 5 5 5 6 0 11 77 5 00 000 4444 6 7 3 6 6 6 6 666 6 0 2 0 0 777
lowQualScore : . ... ... .. . . .... . . . . . . . . . . . . . . . . . . . . .. .. . . . ...... . .. . . .... . .................... . . . ......... . ..... . . ..... .............. .. . . . . . . . . .. ... ...... ... . ...... ......... . ........... . ............. . . . . . .. ... . .... . ..... . . . . .. . . .. . . . .. ........ ... . .. . .. .. ....... . .... . . ... . ... . ....... . .. ...... .. . . . ..................... .. . ........ . . ........... . .. . . . . .. . . . . . ... .. . . .. .. . . . . . . .. .. . .. ... .... . . . . . . . ... . . . . . ...
lowQualScore : 0 555 555 33 3 3 3333 3 3 3 0 5 0 5 5 0 5 5 3 3 3 0 0 5 0 0 0 00 55 7 7 7 333333 3 33 3 7 7777 3 77777777777777777777 0 3 3 777777777 3 00000 3 3 33333 77777777777777 22 5 5 0 7 2 7 7 7 22 777 888888 888 3 333333 888888888 0 00000000000 5 0000000000000 5 2 5 0 0 00 999 7 2222 5 22222 7 7 7 3 11 7 7 99 7 7 7 44 99999999 777 0 99 0 55 99 9999999 8 4444 4 4 777 0 222 4 6666666 2 11 111111 11 4 9 4 777777777777777777777 55 0 66666666 4 4 88888888888 0 11 0 6 0 0 99 0 0 7 7 7 000 66 7 7 33 99 4 7 7 7 6 7 44 99 7 77 000 2222 7 3 2 7 7 7 7 777 7 0 5 0 0 555
consensus : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AN--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( family-2444 ) : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AN--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|1 : TTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCTA-C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGCCACAA-CTTCAAAATGTGATCTAAAAATCACTC-AAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTT-GCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATC------TAATTCTA--TTCTTAACATTTGTATCTC-TCCTCCAGAA-T--GATA-TT------TCA-----------CGAATAATTCAT-ATAA---------TAAAATTAGACAC-CA----TGGCT-ACAATTTGACAAACAAAATTCAAAGAAG--------------CGTA-CACCGCTGCCA-CAAAC-AATGTAACGT-TCTATGAG-T-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAA-AGCCAGCATACATATATAAA-G--AGCTTCCCTAATAAAA-TAAA-C-A-GTACTAGAGGGCA--GTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AG--CTAGTA-TAAGAT-A---AAT-GAAA--TAG--CT--TCGGC--TCT-ATTC-GGCCA-CT--C-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTTCTGTC--TTATATT-ATTA-CCTGTTGCT-G--CTTCGAGCTTC-GACCGTAAAGTGATCTCAAGACTC---AA-T-CC---C--GGTTT-ATATA-CCATTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACCGCCGGGTT--AGTCTATC-TTTATTAT--GTC---CTTATCATTAAAGTTACAT----TGAACAATTGTATT-GATCAATATA-CC-TATCATTATAGTC--TTATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|10 : ctTACTGGGAAACAAGGTCGGCT--CC-TTTTCGGCCGC-TAACC-CT-GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGC-CAGTACCGGTAGC-CT-------AA--ATA----CTGGACACAC--CTTATACCAAAAT-A---AAC-G-AA--CAG--CT--TCAGC--TCT-ATTCAAGCCA-C---------C-TGA-A---------------A-----T-CACTT-C-Ca
gi|11 : ATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TN-------NNNNNNN----NNNN-NN-NN--NNNNNN-NNNNNN-N---NNN-NNNN--NNN--NN--NNNNN--NNN-NNNNNNNNNN-NN--N-----N-NNN-NNN----NN--N-NNNNNNNNCT-CACCTAT-CTTTTTACTTCCTTTATTATTCCCTTTCTGTC--TTA
gi|12 : -AATGTAACATGTCTATGATGT-CAAC-GC--TT---AATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----AG---ATTT
gi|13 : tattgttggtaT--CAACCACTGGCAGATTTCCCAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|14 : CCTTACTGTC--TTAAATT-ATTA-CCTGTTTCT-G--CTTTGAGCTTC-AACCGTAGAAT
gi|15 : -ACT----TA--T-CCTA-----T-TACTT-C-TTTT-----------ATTATTCCCTTTCTGTC--TTAAATT-ATTA-ca
gi|16 : tcTTAATAAAATTATG-CTTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|17 : --CGTA-CATCGCTGCCACCAAAT-AATGTAACGTGTCTAT
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGC
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTT-GTCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGT--GATATTT------TCA-----------CGAGTAA-TCAT-ATCA--------TTAAAATTTGACCC-CA----TGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACAAA-GAAGCGTACCACCGCTGCCACCAAAT-AATGTAACGTGTCTATGAGTT-C-------------ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTAC
gi|2 : -TATATATATAAA-GCGAG-TTCCCTAAT--AAATAAA-C-A-GTACTAG--GGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT---ATTT-CCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AAGCCTAGTA-CAAGTC-A---AAT-GAAA--TAG--CT--TTGGC--TCT-TATCGGGCCA-CT--AA----T-TCA--TT----TA--TTCCTA-----T-AACTT-C-CTTT-----------ATTATTTCCTAACTGTT--CTAATTT-ACAAACCTGTTGCT-G--CTATGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---CC-GGTTT-ATATA-CCCT--G--GGCG-TTCCA-TTCAA-AGGGG-TGACCGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATGAT-TT-GATTCAT-TACCC-TATCATTATAGTCCTTTATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACATgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|3 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctacgTAACGTGTCTATGAGTTTCAAC-GCATTT---ATTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAATTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTAC-AAA---GACA---TATATATATAAA-G--AGCTTCCCTA-------TAAA-T-ACGTACTAG-GGGCA-GGTCGGCT--CT-ATTCGGGCCAA-TATAC-C-AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGT-CAGTAA-TATGG--TT-------ACCAACT----CTGG-TA-AGA-CTAGTC-AAAGACTA---AAT-GAAAACTAG---T--TCGGC--TCT-ATTCGGGCCAACT--AA----C-TCA---C----TA--T-CTTT-----T-TACTT-CTCTTT-----------ATTATTCC-TTTCTGTCACTTAAATT-ATTA-CCTGTTGCT-GTGCTTTGAGCTTC-GACCGTAAAGTGATCTCAAGCCTCCA-GA-T-TCCAAC--GGTTTAATATA-CCT------GCCG-TTTCATTTCAATAGGGGGTGACG--CGGGTT--AGT-TATCTTTTATTAT--GTC---CTTTTCATTAAAGTTACCTGTCATG-AC-A-TGTATT-GATCAAT-TACCTATATCATTATAGT---TTATCTTG-AAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|4 : GAGTTGAATGCCTT-TGAAATCATTGTTTA--TCTACATTTCTAACTTTTCAATTTCTTGTTCCA-AA-TTTGAAATTTCAAATGTCAAACCATCCATGTGACTAC-TCATTGTCAAACTTTACTTAAAATAAAACACGCAAAAACGGCT-ACCACT--GCCACCAAAATT------ATTT-----AATGA--CTT--TATC-CTGTCGCCAAACCAATATAA--------TGAATT-CGACCAC--TTTTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----AG---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATAC-AAAACAGATGAC-CA-----ACAACTT--AGCTTCCA-AAC--AACTAGA-CAA-GCAACAGA-GACA-GGTCGGCT--CT-ATTCGGGCCAC-TATCT-CTGTCA-----CAGTAC-CTA--TTCCC-TAACAA--AAT-TAGT-ACCATGGCCTTGGAC---GACCACCAAGAATGC-TA-AC--CCTATA-TACGGT-AATCAACAGAGA--CAG---G--TCGGC--TCT-ATTCGGGTCA-CT--ATCTCTT-TTACACC----TATTT-CCTA-----T-CAt
gi|5 : TGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTAC-AAAA-AGACAG--TATATAAATAAA-T--GACTCCCCTAAT--AA-TAAACC-A-GTACT--AGGGCA-GGTCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--TT-------TACCA-C----CTGG-TA-AG--CCTGT----AGAC-A---ATG-AAAA--TAGACTT--TCGGCTTTCT-ATTCGGGCCA-CTAAA-----T-TC--ACTTTTATA--T-CCTA-----TGCACTT-C-CTTT-----------ATT-TTCCCTTTCTGT---TTATATTGAT---CCAGTTGCTGG--CTATGAGCTTCGGACCGTAGAGTGAT-TCA--ACTCCAGGA-T-CC---C--GA--T-ATATA-CCCTTGG--GACG-TTCTA-TTCAA-AGGGGTTGACGGCCGGATT--AGTCTATC-TTTATTATA-GTC---TTTATCATatgcttgtcactaatgccaca
gi|6 : gtAA-TTTA---AAT-GGACAG--TATAGATATGAA-G--ATGTTCCCTAATG-AA-TTAA-C-A-GTACTGGAGA-CA-GGTCGGCT--CT-ATTCGGGCCAC-TAAGA-CCAGTA-----C--CAT-CTATTTCCCCCTGATAT--TGC-CATTT-CTTTGG--TTTTTGATTAACAACC----TTGG-TA-AT--CCCAT-----------------------TAT--CTAATCTGT--TCT-TTTCAGGTCA-CT--A-----AATCA--CC----TA--T-TCTA---------CTT-C-CTTG-----------ATCACCCCTTTACTGCC--ATAAATT-CTTA-CCTGTTTAC-A--CTTTAAATTTT-GATCTCAGAATGACTCCGATACTGCA-GGTT-CT---C--GGTTA-ATTTA-CCCCTGG--GGTG-TTCTA-TT----AAGGGGTGG----CAGGTT--ATTTCACT-TTTAGTATA-GTCCTTCTTATCA-TATAGTTTCAT----CGATC-ATTA--------CCAT-TA-------TATTATAGTA---TGTCTAT-CAAATGT-A-AAAC-AATGAA---TATTACA
gi|7 : ----CTGG-TA-AAGCCTAGTA-CAAGAC-A---AAT-AAAA--TAG--CT--TCGGC--TCTAATTC-GGCCA-CT--A-----T-TCA-ATT----T---T-CTTA-----TAGATTC-C-CTTT-----------ATTATTTCCTAACTGTC--CTTAATT-TCAA-CCTGTTGCT-G--CTATGAGCTTC-GA-CGTAGTGTGATCTCAAGACTCCA-GA-T-CC---CCAGATTT-AATTACCCCTTGGGAGACGTTTCTA-TTCAA-A--GGGTGACGGCCGGGTTTAAGTCTATC-TTT-TAATACGTC---CTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCAT-TACCC-TATCCTTATAGT---TTATGTTT-AAAAT
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTG-CACAAACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATGATGCCTTT-GGTCTACCATGCGAG-TTTATGTGCAGTATTa
gi|9 : TGCT-G--CTATGAGCTTC-GACCGAAGAGTGATCTCAAGACTCCA-GA-TCCC---C--GGTTT-ATATA-CCCTAGG--GACG-TTCTA-TTCAA-A-GGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---TTTATCATTAAAGTTACAT----TGAAC-A-TGTATT-GATTCAT-TACCC-TATCATTATAGTCT-TTATCTAT-AAAAT
blockSeqs : . . . . A A AAGG . A T C . . A . C A . C T T G C A G G . CT . G ATTGTT A CA T G TTT T CAAATGTCAAACCATCCATG G . T AACTTTACT G AAAAC A T CAAAA TCATACAAAGAAG AC G C C G T A C AT TTG TGTTTA AAA G TTAGAT TAGAATTTT A TCTCTATATTT C GGGTTTTAATCAA G A G A . AC AC T GCG C AAA C A C G GA A A CG A T A CA TTCTTC TGT C AT C CC TTTGATT AAGA A C AGC T ACC T ATCAACA AC ACTT TT A A A ATCTCTTTTACACC TT T NNNNCTC A T TTACTTCCTTT T AC G T A G TG T G G T C CAA CA A C TT GA T T T G CG TA T AC CTT GTCA . T A G . C A CCT . A C A T AAT
blockSeqs : . A A . . A . . . . . . . . T . GT T TCA C . . T . T . . . TTAATGA A G C . T . A . . . CAACG GA G TTAGAT AG . . C . G A G . . A G T TT C AAC . . . A AG G . . . . . TG CAG CT . . . C GGAC . . . AGC N NN . AAC . CTAA . . N . AAATTCACTTTTA . . TGC . . . A . . T . . . A . . . . . C . . CT . . . . G GG . . A . . . T A . . C . CT . . C . . .
blockSeqs : . . C . T . G . . . . GA . . AT . . . . . . . . . T G T G C GAA . . . A AG G . . . . . GA CA CC . . . . . . . . GA A AC . NNN . CT . . G . NNNNNNNN . . TAG . . . T . . A . . . T . . . . . . . . TT . . . . G GG . . A . . . T A . . C . A . . . . . .
blockSeqs : . T . A . . . . G . . AG . . . . . . T T G AA . . . A G A . . . . . CA C TC . . . . . . . . C A CA . AAT . NN . . G . AATTCATT . . TC . . . A . . T . . . A . . . . . . . . TA . . . . A GG . . A . . . . . . . C . . .
blockSeqs : T . . . . . . . . . AT . G . . . . . G A G . . . . . T C T . . . . . . . . N T AT . AAT . CT . . G . AAATCACC . . TT . . . T . . T . . . T . . . . . . . . T . . . . . G . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . A C C . . . . . . . . C T AC . ATG . CT . . G . ATTCAATT . . TA . . . T . . A . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G C . . AAT . T . . A . AACTCAC . . TT . . . A . . . . . . A .
blockSeqs : . . . T A . . . . G . . . . CTGAA . . TC . . A .
blockSeqs : . . .
blockSeqCons : G** AAA** A* CC*
originalCons : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAGC-TATATATATAAA-G--AGCTTCCCTAAT--AA-TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AN--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTC--TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
finalCons : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGACAG--TATATATATAAA-G--AGCTTCCCTAATAAA--TAAA-C-A-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--TT-------AACCACC----CTGG-TA-AN--CTNGTA-CAAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CC---C--GGTTT-ATATA-CCCTTGG--GGCG-TTCCA-TTCAA-AGGGGGTGACGGCCGGGTT--AGTCTATC-TTTATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTCC-TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Alignments
lowQualScore : 1 222 222 11 2222 1 1 1 1 1 1 1 1 1 1 1 1 1 11 11 333333 11 2222 77777777777777777777 1 1 555555555 1 22222 1 66666666666666 11 111 333333 111 1 33333333333333333333333 33333333333 5555555555555 11 1111 111 11111111 2222222 111 111 111111 333333333333333333333 11111111 22222222222 222 11 111 1111 333 1 1 1 111
lowQualScore : 5 000 000 88 7 7 8888 3 7 7 1 5 5 5 5 5 5 5 3 3 7 1 1 5 1 5 5 88 77 0 6 0 888888 7 88 7 6 2222 7 33333333333333333333 1 3 3 555555555 3 99999 3 7 77777 66666666666666 33 2 2 8 0 3 6 1 6 99 111 555555 000 3 66666666666666666666666 8 88888888888 2 5555555555555 2 3 2 8 8 44 7777 000 1 99 2 88 1 6 6 2 7 6 5 77 5 5 5 55 77777777 999 5 66 5 00 66 5 6666666 9999 4 4 777 1 333 4 8888888 666 111111 66 4 5 4 111111111111111111111 55 4 44444444 4 4 33333333333 1 66 5 3 5 5 66 1 5 5 5 5 333 5 5 55 77 0 5 5 5 6 0 11 77 5 00 000 4444 3 6 3 3 6 6 6 6 555 6 0 2 0 0 777
lowQualScore : . ... ... .. . . .... . . . . . . . . . . . . . . . . . . . . .. .. . . . ...... . .. . . .... . .................... . . . ......... . ..... . . ..... .............. .. . . . . . . . . .. ... ...... ... . ....................... . ........... . ............. . . . . . .. .... ... . .. . .. . . . . . . . .. . . . .. ........ ... . .. . .. .. . ....... .... . . ... . ... . ....... ... ...... .. . . . ..................... .. . ........ . . ........... . .. . . . . .. . . . . . ... . . .. .. . . . . . . .. .. . .. ... .... . . . . . . . . ... . . . . . ...
lowQualScore : 0 555 555 33 3 3 3333 3 3 3 0 5 0 5 5 0 5 5 3 3 3 0 0 5 0 0 0 00 55 7 7 7 333333 3 33 3 7 7777 3 77777777777777777777 0 3 3 777777777 3 00000 3 3 33333 77777777777777 22 5 5 0 7 2 7 7 7 22 777 888888 888 3 22222222222222222222222 0 00000000000 5 0000000000000 5 2 5 0 0 00 0000 222 7 22 5 33 7 7 7 3 1 6 7 99 7 7 7 44 99999999 777 0 99 0 55 99 0 9999999 4444 4 4 777 0 222 4 6666666 333 111111 11 4 9 4 777777777777777777777 55 0 66666666 4 4 88888888888 0 11 0 6 0 0 99 0 0 7 7 7 666 7 7 33 99 4 7 7 7 6 7 44 99 7 77 000 2222 5 7 2 2 7 7 7 7 222 7 0 5 0 0 555
consensus : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGA----CAG--TATATATATAAAG--AGCTTCCCTAAT-AAATAAA-CA-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AN--CTNGTAC-AAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CCC---GGTTTA-TATA-CCCTTGG--GGCG-TTCCATT-CAA-AGGGGGTGACGGCCGGGTT--AGTCTATCTTT-ATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGT-C-TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
Reference ( family-2444 ) : NNTTATAGGTCAACCCGCTGCGTGT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGATACTGCCAAGTACATGCCTTTTGCTTNGGGTGACCAACAATTAAAGCTCTGCCACAAACTTCAAAATGTGATCTAAAAATCACTCCAAGACGTACTACCATCAAAATGTTGCAGGCTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGNCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTNCAACCGATTGCTAGTATCCTGATTACTTGGTCTGCCATNGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCCAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGACTGACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCGGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAA-T--GATATTT------TCA-----------CGANTAA-TCAT-ATCA--------TTAAAATTAGACAC-CA----CGGCT-ACAATTTGACAAACAAAATTCAAAGAAGTC-----AA-GA--CGTA-CACCGCTGCCACCAAAC-AATGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTAC-AAAA-AGA----CAG--TATATATATAAAG--AGCTTCCCTAAT-AAATAAA-CA-GTACTAGAGGGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AN--CTNGTAC-AAGAC-A---AAC-GAAA--TAG--CT--TCGGC--TCT-ATTCGGGCCA-CT--A-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTNCTGTC--TTAAATT-ATTA-CCTGTTGCT-G--CTNTGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CCC---GGTTTA-TATA-CCCTTGG--GGCG-TTCCATT-CAA-AGGGGGTGACGGCCGGGTT--AGTCTATCTTT-ATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATTGTATT-GATCCAT-TACCC-TATCATTATAGTCC-TTATCTAT-AAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|1 : TTATAGGTCAACCCACTGCGTGTTCCAACCACTGGCAGATTTCCTA-C-CACC----TTGCTGCATTTCCTCTG-GTGATACTGCCAAGTACATGCCTTTTGCTTGGGGTGACCAACAATTAAAGCTCTGCCACAA-CTTCAAAATGTGATCTAAAAATCACTC-AAGACGTACT-CCATCAAAATGTTGCAGGTTTAATAAAATTATG-CTTT-GGTTTACCATGCGAGTTTTATGTGCAGTATTGGCTTGTGGTGAATACTTATTGCTGTCCGCAGAGACTTGATCATGTGCATCTATTTGCGGTTGCAACCGATTGCTAGTATCCTG-TTACTTGGTCTGCCATCGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGACCTGCCAAATAATCCATTGAGCCCCTTT-GCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTTGGTCGGCGTTCTGTGTTGCGCTAAATCTGA--GACGCCTGCGTTTCGTACGACCATGGGAGTTGAGCGTCTTGCAGAATC------TAATTCTA--TTCTTAACATTTGTATCTC-TCCTCCAGAA-T--GATA-TT------TCA-----------CGAATAATTCAT-ATAA---------TAAAATTAGACAC-CA----TGGCT-ACAATTTGACAAACAAAATTCAAAGAAG--------------CGTA-CACCGCTGCCA-CAAAC-AATGTAACGT-TCTATGAG-T-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACCGA------TT----A------T---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAACAATGAA-TTTACGAAAA-AGC----CAGCATACATATATAAAG--AGCTTCCCTAATAAAATAAA-CA-GTACTAGAGGGCA--GTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT-CTATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AG--CTAGTAT-AAGAT-A---AAT-GAAA--TAG--CT--TCGGC--TCT-ATTC-GGCCA-CT--C-----T-TCA-ACT----TA--T-CCTA-----T-CACTT-C-CTTT-----------ATTATTCCCTTTCTGTC--TTATATT-ATTA-CCTGTTGCT-G--CTTCGAGCTTC-GACCGTAAAGTGATCTCAAGACTC---AA-T-CCC---GGTTTA-TATA-CCATTGG--GGCG-TTCCATT-CAA-AGGGGGTGACCGCCGGGTT--AGTCTATCTTT-ATTAT--GTC---CTTATCATTAAAGTTACAT----TGAACAATTGTATT-GATCAATATA-CC-TATCATTATAGT-C-TTATC-ATAAAAATGT-ACAAAG-AA-AAA---TATTACAT
gi|10 : ctTACTGGGAAACAAGGTCGGCT--CC-TTTTCGGCCGC-TAACC-CT-GCGTTCTTC--TAC-TAATCTTCAC-TGACAAATCGC-CAGTACCGGTAG--CCT-------AAATAC------TGGACACAC--CTTATACCAAAAT-A---AAC-GAA---CAG--CT--TCAGC--TCT-ATTCAAGCCA-C---------C-TGA-A---------------A-----T-CACTT-C-Ca
gi|11 : ATTTTCCC-TGACAA--TGT-CAGTAACTATGG--T-N-------NNNNNNN----NNNN-NN-NN--NNNNNNN-NNNNN-N---NNN-NNNN--NNN--NN--NNNNN--NNN-NNNNNNNNNN-NN--N-----N-NNN-NNN----NN--N-NNNNNNNNCT-CACCTAT-CTTTTTACTTCCTTTATTATTCCCTTTCTGTC--TTA
gi|12 : -AATGTAACATGTCTATGATGT-CAAC-GC--TT---AATCTTTGTTTAATA----TTAATTTTC-CTCAATCACTGA------TT----A------G---ATTT
gi|13 : tattgttggtaT--CAACCACTGGCAGATTTCCCAACACACCAAGGTTG-TGCATTTCCTCTGAGTGATACTGCCAA
gi|14 : CCTTACTGTC--TTAAATT-ATTA-CCTGTTTCT-G--CTTTGAGCTTC-AACCGTAGAAT
gi|15 : -ACT----TA--T-CCTA-----T-TACTT-C-TTTT-----------ATTATTCCCTTTCTGTC--TTAAATT-ATTA-ca
gi|16 : tcTTAATAAAATTATG-CTTTTGGTTTACCATGCGAGTTTTATGTGCAGTATT
gi|17 : --CGTA-CATCGCTGCCACCAAAT-AATGTAACGTGTCTAT
gi|18 : TAAATCAGAATGGCCTGCCATACCACCCTGGCCTGC
gi|2 : CTTGTGGTGAATACTTATTGCTGGCCGCAGAGACTTGATCATGTACATCTATTTGCGGTTCCAACCGATTGCTAGTATCCTGATTACTTGGTCTACCATGGCATGCCATACTATTTCTTAAATCAGAATGGCCTGCCATACCACCCTGGCCTGCTAAATAATCCATTGAGCCCCTTTGGCTAACCAAGCGACTACGCTGTACACCTGGGCTGACACCATGGCTTGCCATTT-GTCGGCGTTCTGTGTTGCGCTAAATCTGACTGA--CCTGCGTTTCGTACGACCATGGGAGTTGAGTGTCTTGCAGAATC------TAATTCTA--TTTCTAACATTTGTATCTCTTCCTCCAGAAGT--GATATTT------TCA-----------CGAGTAA-TCAT-ATCA--------TTAAAATTTGACCC-CA----TGGCTAACAATTTGACAAACAAAATTCAAAAAAGTCATACAAA-GAAGCGTACCACCGCTGCCACCAAAT-AATGTAACGTGTCTATGAGTT-C-------------ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGATTAGATTT----A------T---ATTTATA-TTGTTAG-----------CCCTAC
gi|2 : G--TATATATATAAAGCGAG-TTCCCTAAT-AAATAAA-CA-GTACTAG--GGCA-GGTCGGCT--CT-ATTCGGGCCAC-TATCC-CCAGCA-----C--TAT---ATTT-CCC-TGACAA--TGT-CAGTAACTATGG--T-T-------AACCACC----CTGG-TA-AAGCCTAGTAC-AAGTC-A---AAT-GAAA--TAG--CT--TTGGC--TCT-TATCGGGCCA-CT--AA----T-TCA--TT----TA--TTCCTA-----T-AACTT-C-CTTT-----------ATTATTTCCTAACTGTT--CTAATTT-ACAAACCTGTTGCT-G--CTATGAGCTTC-GACCGTAGAGTGATCTCAAGACTCCA-GA-T-CCCC--GGTTTA-TATA-CCCT--G--GGCG-TTCCATT-CAA-AGGGG-TGACCGCCGGGTT--AGTCTATCTTT-ATTATA-GTC---CTTATCATTAAAGTTACAT----TGAAC-ATGAT-TT-GATTCAT-TACCC-TATCATTATAGTCCTTTATCTAT-AAAATGTAACAAAGAAA-AAA---TATTACATgtatatatataaagcgagttccctaataaataaacagtactagggcaggtcggctctattcgggccactatccccagcactatatttccctgacaatgtcagtaactatggttaaccaccctggtaaagcctagtacaagtcaaatgaaatagctttggctcttatcgggccactaattcatttattcctataacttcctttattatttcctaactgttctaatttacaaacctgttgctgctatgagcttcgaccgtagagtgatctcaagactccagatccccggtttatataccctgggcgttccattcaaaggggtgaccgccgggttagtctatctttattatagtccttatcattaaagttacattgaacatgatttgattcattaccctatcattatagtcctttatctataaaatgtaacaaagaaaaaatattacat
gi|3 : cttgtggtgaatacttattgctggccgcagagacttgatcatgtacatctatttgcggttccaaccgattgctagtatcctgattacttggtctaccatggcatgccatactatttcttaaatcagaatggcctgccataccaccctggcctgctaaataatccattgagcccctttggctaaccaagcgactacgctgtacacctgggctgacaccatggcttgccatttgtcggcgttctgtgttgcgctaaatctgactgacctgcgtttcgtacgaccatgggagttgagtgtcttgcagaatctaattctatttctaacatttgtatctcttcctccagaagtgatattttcacgagtaatcatatcattaaaatttgaccccatggctaacaatttgacaaacaaaattcaaaaaagtcatacaaagaagcgtaccaccgctgccaccaaataatgtaacgtgtctatgagttcattcttatagacttaattttcctcaatcactgattagatttatatttatattgttagccctacTAACGTGTCTATGAGTTTCAAC-GCATTT---ATTCTT------ATAG--CTTAATTTTCGCTCAATCAATGA------TTTAGAA------TTTTATTTATA-TTGTTG--------------CTAC-T-------------TGGGTGAA--TAAACAATGAAATTTAC-AAA---GA----CA---TATATATATAAAG--AGCTTCCCTA-T-AAATA---C--GTACTAG-GGGCA-GGTCGGCT--CT-ATTCGGGCCAA-TATAC-C-AGCA-----CA-TATGTTATTTTCCC-TGACAA--TGT-CAGTAA-TATGG--T-T-------ACCAACT----CTGG-TA-AGA-CTAGTCA-AAGACTA---AAT-GAAAACTAG---T--TCGGC--TCT-ATTCGGGCCAACT--AA----C-TCA---C----TA--T-CTTT-----T-TACTT-CTCTTT-----------ATTATTCC-TTTCTGTCACTTAAATT-ATTA-CCTGTTGCT-GTGCTTTGAGCTTC-GACCGTAAAGTGATCTCAAGCCTCCA-GA-T-TCCAACGGTTTAATATA-CCT------GCCG-TTTCATTTCAATAGGGGGTGACG--CGGGTT--AGT-TATCTTTTATTAT--GTC---CTTTTCATTAAAGTTACCTGTCATGA-C-AT-GTATT-GATCAAT-TACCTATATCATTATAGT---TTATCTTG-AAAATGT-ACAAAG-AA-AAAAATTATTAC
gi|4 : GAGTTGAATGCCTT-TGAAATCATTGTTTA--TCTACATTTCTAACTTTTCAATTTCTTGTTCCA-AA-TTTGAAATTTCAAATGTCAAACCATCCATGTGACTAC-TCATTGTCAAACTTTACTTAAAATAAAACACGCAAAAACGGCT-ACCACT--GCCACCAAAATT------ATTT-----AATGA--CTT--TATC-CTGTCGCCAAACCAATATAA--------TGAATT-CGACCAC--TTTTGGTTTTTCAACG-ATAAAACTTA---TTCGCT--ATCTCTAA------TT----A------G---ATTTATAATTCTTAGTCTCTATATTTCCCTATCTGGGTTTTAATCAATGAGT-AAATCAAACAAT--A-TATAC-AAAACAGATGACCAA--CA---ACTTA------GCTTCCA-AAC-AACTAGA-CAAGCAACAGAGA-CA-GGTCGGCT--CT-ATTCGGGCCAC-TATCT-CTGTCA-----CAGTAC-CTA--TTCCC-TAACAA--AAT-TAGT-ACCATGGCCT-TGGAC---GACCACCAAGAATGC-TA-AC--CCTATAT-ACGGT-AATCAACAGAGA--CAG---G--TCGGC--TCT-ATTCGGGTCA-CT--ATCTCTT-TTACACC----TATTT-CCTA-----T-CAt
gi|5 : TGTAACGTGTCTATGAGTT-CAAC-GC--TT---ATTCTT------ATAGA-CTTAATTTTC-CTCAATCACTGA------TT----AGATTTAT---ATTTATA-TTGTTAG-----------CCCTACCT-------------TGGGTGAAATCAAGCAATGAA-TTTAC-AAAA-AGA----CAG--TATATAAATAAAT--GACTCCCCTAAT--AATAAACCA-GTACT--AGGGCA-GGTCGGCTCGCTAATTCGGCCGACTTATCCACGAGCA-----C--TA--CT-TTTTCCC-CGACAA--TGTCCAGTAACTAAGG--T-T-------TACCA-C----CTGG-TA-AG--CCTGT----AGAC-A---ATG-AAAA--TAGACTT--TCGGCTTTCT-ATTCGGGCCA-CTAAA-----T-TC--ACTTTTATA--T-CCTA-----TGCACTT-C-CTTT-----------ATT-TTCCCTTTCTGT---TTATATTGAT---CCAGTTGCTGG--CTATGAGCTTCGGACCGTAGAGTGAT-TCA--ACTCCAGGA-T-CCC---GA--TA-TATA-CCCTTGG--GACG-TTCTATT-CAA-AGGGGTTGACGGCCGGATT--AGTCTATCTTT-ATTATA-GTC---TTTATCATatgcttgtcactaatgccaca
gi|6 : gtAA-TTTA---AAT-GGA----CAG--TATAGATATGAAG--ATGTTCCCTAAT-GAATTAA-CA-GTACTGGAGA-CA-GGTCGGCT--CT-ATTCGGGCCAC-TAAGA-CCAGTA-----C--CAT-CTATTTCCCCCTGATAT--TGC-CATTT-CTTTGG--T-TTTTGATTAACAACC----TTGG-TA-AT--CCCAT-----------------------TAT--CTAATCTGT--TCT-TTTCAGGTCA-CT--A-----AATCA--CC----TA--T-TCTA---------CTT-C-CTTG-----------ATCACCCCTTTACTGCC--ATAAATT-CTTA-CCTGTTTAC-A--CTTTAAATTTT-GATCTCAGAATGACTCCGATACTGCA-GGTT-CTC---GGTTAA-TTTA-CCCCTGG--GGTG-TTCTATT-----AAGGGGTGG----CAGGTT--ATTTCACTTTT-AGTATA-GTCCTTCTTATCA-TATAGTTTCAT----CGATC-ATTA--------CCAT-TA-------TATTATAGTA---TGTCTAT-CAAATGT-A-AAAC-AATGAA---TATTACA
gi|7 : ----CTGG-TA-AAGCCTAGTAC-AAGAC-A---AAT-AAAA--TAG--CT--TCGGC--TCTAATTC-GGCCA-CT--A-----T-TCA-ATT----T---T-CTTA-----TAGATTC-C-CTTT-----------ATTATTTCCTAACTGTC--CTTAATT-TCAA-CCTGTTGCT-G--CTATGAGCTTC-GA-CGTAGTGTGATCTCAAGACTCCA-GA-T-CCCCA-GATTTA-ATTACCCCTTGGGAGACGTTTCTATT-CAA-A--GGGTGACGGCCGGGTTTAAGTCTATCTTT--TAATACGTC---CTTATCATTAAAG-TACTT----TGAAC-ATTGTATTGGATTCAT-TACCC-TATCCTTATAGT---TTATGTTT-AAAAT
gi|8 : TTATAG-TCA---CGCTG---GT--CAACCACTGGCAGATTTCCCAACACACC----TTG-TGCATTTCCTCTGAGTGA-ACTGCCAAGTACATGCCTTTTGCTTCGGGTGACCAACAATT-AAGCTCTG-CACAAACTTCAAAATGTGATCT-AAAATCACTCCAAGATGTACTACCATC-AAATGTTGCAGGCTTAATAAAATGATGCCTTT-GGTCTACCATGCGAG-TTTATGTGCAGTATTa
gi|9 : TGCT-G--CTATGAGCTTC-GACCGAAGAGTGATCTCAAGACTCCA-GA-TCCCC---GGTTTA-TATA-CCCTAGG--GACG-TTCTATT-CAA-A-GGGGTGACGGCCGGGTT--AGTCTATCTTT-ATTATA-GTC---TTTATCATTAAAGTTACAT----TGAAC-A-TGTATT-GATTCAT-TACCC-TATCATTATAGTCT-TTATCTAT-AAAAT