lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111111111111111111111111111111111111111111111111
lowQualScore : 4 1 4 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 4 9999999999999999999999 4 777 1 4 1 55 11 11111111111111111111111111111111111111111111111111111 1 2 22 6666 22 11 77777777777 1 2 444444444444 555 1 1 1 111 11111 2222 1 11 11 1 1 2 1 11 1 1 11 11 1 1 222222 1 555555555 11 11 444444444444444444 111 2222 111 55555555555555555555555555555555555555555 444444444444444444444444444 2222222 55555555555555555555555555555555555555555555555555555555555555555555555 1111111 1111 44444444444 1111111 2222222222 11111
lowQualScore : 6 0 5 6 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 22 0 6 3333333333333333333333 0 000 7 0 5 6 55 22 6 88888888888888888888888888888888888888888888888888888 5 6 0 66 6 0000 77 88 00000000000 5 0 3 000000000000 4 4 888 3 0 0 777 77777 1111 0 44 66 33 0 3 0 1 0 33 0 7 3 88 2 22 0 0 2 999999 0 2 0 3 222222222 33 3 33 999999999999999999 111 5555 5 4 4 4 777 4 44 777 99 4 000 55555555555555555555555555555555555555555 2 1 3 3 5 99999 7777 111111111111111111111111111 555 6666 3 3 555 4 77 0 44 5555555 3 2 77 33333333333333333333333333333333333333333333333333333333333333333333333 4 777 4 8 3 666 1 0000000 55 7 9999 4 4 44444444444 4 3333333 4 4 55 4 55 8888888888 99999
lowQualScore : . . . . . ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . .. . . ...................... . ... . . . . .. .. . ..................................................... . . . .. . .... .. .. ........... . . . ............ . . ... . . . ... ..... .... . .. .. .. . . . . . .. . . . .. . .. . . . ...... . . . . ......... .. . .. .................. ... .... . . . . ... . .. ... .. . ... ......................................... . . . . . ..... .... ........................... ... .... . . ... . .. . .. ....... . . .. ....................................................................... . ... . . . ... . ....... .. . .... . . ........... . ....... . . .. . .. .......... .....
lowQualScore : 0 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00 0 0 0000000000000000000000 0 000 0 0 0 0 00 00 0 00000000000000000000000000000000000000000000000000000 0 0 0 00 0 0000 55 00 55555555555 0 0 0 000000000000 0 0 000 3 0 0 555 88888 2222 0 00 88 88 0 2 0 2 0 88 0 3 3 33 5 88 0 0 5 555555 2 5 0 2 333333333 88 8 66 222222222222222222 777 8888 9 4 2 4 888 0 33 000 55 0 555 77777777777777777777777777777777777777777 0 9 6 6 7 11111 1111 999999999999999999999999999 888 2222 3 3 444 1 99 9 22 4444444 1 5 33 88888888888888888888888888888888888888888888888888888888888888888888888 0 000 0 0 6 444 2 5555555 00 3 1111 0 0 55555555555 0 0000000 0 0 55 0 55 5555555555 00000
consensus : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGTT--CTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACATTT-AGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAGAAAAA-TAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTATT-GATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAATG--ATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAACAGTGG-GCCAAACGATGTGTGAATAATTCGTCAAAGGGTCAAATCTATAAANNAAAAATTTTAAGGTAAACTTTGGCTTTGGCGAAATATNTTTAAGGGACAGGCTCTTTCAAAANANT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTTT---GCCCATAG----AAGTAGGTAGGTGGT-ATGGGGTTCC-NACAAATGACAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--C-AGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAATTC-AGAGAA---A-TTAATGACATCA--TCAAATTTT-AAAAC-TTT---AAAAAA----CT---ATG----TATNTT-CATTTCTAAAATCCAG-GA---GT-TA-GTCTG---CTG--TCC-CCC--TT------------A------------AT--------------ATTTATCAAATTCCT-A-GATCTATTT-----GT----A----------------T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CT-ANTGAA--CAT--ATA-----TA-TG----------------TA-TG------------------TA----AT-AT--TN--ATATA-C---TT-G-TACC-CTTT---GAA--A--T-ATT--GTTT-ATAT----AA-T-TATATTTAT-AAN---TGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------TAA--A--TGAAAT
Reference ( gi|2 ) : TCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATG-CAGTAT-TATTCGTATGGTTGC---GAATTGGGGGAG-GGGAAAA-TCTA-ATGATTC--ACGGAAGTAGTG-CATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGATGTG--AATAATTCGTCAAAGGGTCAAATCTATAAAAA-----TTGTAAGGTAAACTTTGGCTTTGA-GAAATATTTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTTT---GCCCATAG----AAGTAGGTAGGTGGT-ATGGGGTTCC-AACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--C-AGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAATTT-AGAGAAAGAAATAAATGACATCA--TCAAATTTT-AAAAC-TTT---AAAAAA----CT---ATG----TATTTT-CACTTCTAAAATCCAA-GA---GT-TA-GTCTG---CTG--TCC-CCT--TT------------A------------AT--------------ATTTATCAAACTCTT-A-GATCTATTT-----GT----A----------------T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CT-ATTGAA--CAT--GCA-----TA-TG----------------TA-TG------------------TA----AT-AT--TA--ATATA-C---TT-G-TACC-CTTT---GAA--A--T-ATT--GTTT-ATAT----AA-T-TATATTTAT-AAT---TGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------TAA--A--TGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGTT--CTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACATTT-AGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAGAAAAA-TAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTATT-GATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAATG--ATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGTGG--CCAAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATT-----TTTTAAG-TAAACTTTGGCTTTGGCGAAATATGTTTAAGGGACAGGTTCTTTCAAAAAAAT---TTGGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAG--CCAGACGA-TACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGAT-TTGTCATGTA-CAAACACACTGAAATTTCAG----AGAATTGAATGAGACTAATTCCAATTTTAAAAAC-TTTA--AAAAAA----CT---ATGTCA-TATTCT-CATTTCT-AAATCCAACGA---GTCTA-GTCGGGCTCCGA-TCCGCCA--TT------------AC-----------AT--------------ATTTA-CAATCTgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|3 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttatGTT-TATACAACAGTGG-GC-AAACGATGTG--AATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAATT--AAGGTAAACTTTGGCTTTGA-GAAATATTT----AAG-CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTTT---GCCCATAG----AAGTAGGTAGGTGGT-ATGGGGTTCC-AACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--C-AGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGATATTGTCATGTACCAAACACACTGAAATTT-AGAG-----AATTAATGACATCA--TCAAATTTT-AAAACATTTGAAAAAAAA----CT---ATGGGCATATTTT-CATTTCTAAAATCCAA-GA---GT-TA-GTCTG---CTG--TCT-CCT--TT------------A------------AT--------------ATTTATTAAACTCTT-A-GATCCAATT-----GT----A----------------T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CT-ATTGAA--CAT--GTA-----T-------------------------------------------TA----AT-ATACTA--GTA-------TT-G-TACC-CTCT---GAA--A--T-ATT--GTTT-ATAT----AA-T-TATATTTAT-AAA---TGT-A-------CT-TCA-TATA--CCA-TTGATA--ATGGTTTGGCGAAATAA--A--TGAAATagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|4 : TGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTTT---GCCAATAGAAGTAAGTAGGTAGGCGGC-ATGGAATTCC-TACAATTGATAGAAA-CAGCACAC---G-TG-TACTGG-TAAATTAGTTC-AGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGATA-----ATATACCAAGCACACTGCATTTC-AGAGAAgaaa
gi|17 : tTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGGT-ATGGAATGCC-TACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--C-AGttaactttttaaaaaaatctatttaccaggtacattgtatgtatatatatatacatatatattcatttctaaagccagaagttagtctgctgactcccttaattatgatattcatcaaattctcaaatctgtttgtaa
gi|9 : ttgaTATCAACTCTACGAAAAGAATT-TTTGACTTCT-A--------------CCAAACACACTGAAATTC-AGAGAA-----TTAATGACATCA--TCGAA---------------------------CT---GTG----AATATT-CATTTCTAAACTCCAG-GA---GT-TG-ATCTG---CTG--TCC-CCC--TT------------T------------GT--------------ATTTATCAAATTCCC-A-AATCTATTT-----GTATACA----------------T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CT-AATCAA--CAT----A-----TA-TG----------------T
gi|14 : TGACATCA--CTAAACTTT-AAAA----------ACAA----TT---ATG----TATATT-CATTTCTAAAATCCAG-GG---GT-TA-G--------------------------------------------------------------------ATCAAATTCCT-A-GATCTATCT-----GT----A----------------G----T-----A---TCAAGCCTC-CTCC-TC---CTC-----------------------CTCATTGAA--CTT--ATA-----TG-TG----------------TA-Tt
gi|7 : CAAATTT--AAAAT-CTT---AAAAAAAAACCTCGCATG----TATATT-CATCTCTAAAATCCAA-GA---GT-TA-GTCTG---CTG--TCC-CCC--TT------------A------------AC--------------ATTTATCAAATTCCT-A-GATCTACTT-----GT----A----------------TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CT-ATTGAA--CAT--ACA-----TA-TG----------------TA-TG------------------TA----TT-AT--TT--ATATA-C---TT-C-TAC------------------------GTCT-ATCTGGGGAA-T-TATATT----AAT----GT-A-------CC-TCA-GGTA--CCA-TTGATA--ATGGTT--------TGA--G--TGAA
gi|4 : ---ATA----TATATT-CATTTCTAAAG-CCAG-AA---GT-TA-GTCTG---CTGACTCC-CTTAATT------------ATG----------AT--------------ATTCATCAAATTCTC-A-AATCTGTTT-----GT----A----------------taaatgaattg
gi|11 : ttggaaaatcttttgttaagttcagaacaacaaatcattgtttgccaatagaagtaagtaggtaggcggcatggaattcctacaattgatagaaacagcacacgtgtactggtaaattagttcagacgaataccacttcctcttagaatgcaattccttataagactacttggcttctagataatataccaagcacactgcatttcagagaattaactttttaaaaaaatctatttaccaggtacattgtatgtatatatatatacTTTTACACT----AAATTCAA-GGAGTGT-TT-GTCTG---CTG--TCT-CTC--TT------------A------------ATGATATTTTTTAAATATTTATCAAATTCCT-A-GATCT-TTG-----GT----AAG--------------T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CT-AGTGAA---AT----A-----TA-TA----------------TA-TG------------------Ta
gi|6 : tattcatttcTT-CATTTCTAAAATCCAG-GA---GT-TT-GTCTG---CTG--TCC-TCC--TTATGATATTTTTAA------------AT--------------ATTTATCAAATTCCTAA-GATCT-TTTGGTGAGT----G----------------T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CT-AGTGAA--CAT----A-----TA-TA----------------TA-TGTTTTTTTTGGGCTTTTTTTATTTCAT-AT------GTATA-CAATTT-G-TGCC-GTTT---GAA--T--A-ATT--GTTT-ATAT----AA-T-CATAAAAATGAATCCATGT-A-------CC-TCA-TGTA--CCA-CTGATA--ATGG----------TAA--AATTGAAttttt
gi|5 : TT-CATTTCTAAAATCCAG-GA---GT-TTTGTCTG---CT---TCC-TCC--TT------------ATGATATTTTTAAAT--------------ATTTATCAAATTCCT-A-GATCT-TTG-----GT----AGTG-------------T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCT-AGTGAC--AAT--ATAATTATTA-TGTTTTTTTTGGCTTTTTTATTA------------------TC----AT-ATG-TATCACACA-T---TTGG-TGCC-AGTT---TGA--A--TAATT--GTTT-ATATA---AA-T-CATAAAAATGAATCCATGT-A-------CC-TCGTTGTA--CAC-TAGATA--ATTG----------TAAATA--TGAAA
gi|8 : -TA-GCCTG---CTG--GCC-CTC--TT------------G------------AT--------------ATTTATCAAATTCCT-A-GATCTATTT-----GT----AGATCTATTTGTATGTAT----T-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CT-TTTGAA--CAT--ATAA----TG-CG----------------TA-TA------------------TA----TT-AT--TT--ATATA-C---TT-G-TACC-CGTT---GAA--C--T-ATT--GTTT-ATAT----AA-T-TATATTT-----C---TGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------T
gi|21 : ------------AT--------------ATTTG----ATTCCT-A-GATCTATTT-----GT----AAGTA------------T----T-----A---A---GCCTC-CTCC-TC---TTCAttgagcaaataaatgaattgaa
gi|10 : tcAAACTCTC-ATGATCTATTT------T----A----------------T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CT-ATTGTGCTCATAAGTA-----TACTG----------------TA-TG------------------TT----ATAAT--TA--ATATA-C---TT-GTTACCACTTTTGGAAA--A--T-ATT--GTTT-AAAT-----A-T-TATATTTAT-AAGA--TGTGA-------CC-TCA-TGTA---CA-TTGATA--ATGG----------Tt
gi|12 : gtaat----A----------------T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CT-ATTGAA--CAT--ATA-----TG-TG----------------TA-TG------------------TA----TT-AT--TG--AAATA-C---TT-G-TACC-CTTT---GAA--A--T-ACT--GTTT-ATAT----AA-T-TATATTCA--A------GT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------Tttgaggtgaataaataaagtgaaa
gi|1 : ---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CT-ATTGTT--CAT--GTA-----TA-TGC---------------TA-TG------------------TA----AT-AT--T---ATATA-C---TT-GCTACC-CCTT---GAA--A--TAATTGCGTTTAATATATTAAA-TATATATTTAT-AAA---TG--A-------CCGTCA-TGTACCCCA-TT-ATA--ATGG----------Tttgagcgaataaatgaattg
gi|20 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggc---TTCATGT--ATCTTG--TG-------CT-AATAAA--CAT----A-----TA-TG----------------TG-T--------------------------T-AT--TC--ATATA-T---TT-G-TACC-CTTT---G-A--A--T-ATT--G-TT-ATAT----ttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|13 : gctTTTG--TG-------CT-AATGAAA-CAT----A-----TG-TG----------------CA-GG------------------TT----ATTAT--TT--ATGTAAC---TT-A-TATC-CTTG---GCA--A--T-ATT--GTTTTATAT----AAAT-CATATTAA--AAT---TGT-ATTTAATACC-TCA-TGTA--CCA-TTG-TAAGATGGTT--------TGA--G--TGAA
gi|16 : -CTTT---GAATGACCT-ATT--GT---ATAT----A--T-TGTGTCT----------GT-A-------CC-TCA-TGTA--CTATTTGACA--ATGG----------taatgaattaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATATCAAATGTATAGACATCGGAAATTTGTATAATATATACTAAATATACTAACTTACATGTATATATTCATGTACCTCATGAACCATCGTATGATTGGTTTGAGTGAATAAATGGATTGA
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT
Alignments
lowQualScore : 1 1 11 1 1 22 1 2 1 22 2 1 2 55555555555 11 1 1 1 1 11 1 11 11 11 1 1 333 11 11 2 1 1 1 2 55555 1 444444444444444 222 4444 11 2222 4444 22 11 1 1 44444 1 2222 1 55555 22 333 2 222 1 1 11 222222 22 1 2222 2 33333333 2 1 1 99999999999 2 2222 1 1 2 1 1 222 111 1 1 2 11 2 1 333 555555555555 22 33333 2 22 333 4444 3333333 2 11 1 22 1 1 1 333333333 444444444444 1 4444 2 4444 1 11 1 1 1 222 1 11 11 222 1 22 22 1 222 2 2 1 1 33 44444 1 22 1 3333333 1 1 111 1111 1111 1 11 1 11 11111 2222222 11111 4444444444444444444444444444444444444444444444444444444444 11111111 666666666666666666666 2222222222222 222222222222222 2222222 11111 44444444444444444444 111 1111 33333333333 1111111 2222222222 11111
lowQualScore : 5 2 5 77 5 5 55 77 5 0 3 5 77 0 5 4 3 0 66666666666 88 5 2 2 5 5 5 2 66 88 3 5 88 2 88 77 999 5 2 5 555 3 88 88 0 4 5 5 4 5 0 4 2 00000 5 111111111111111 000 2222 88 8888 3 4 2222 77 88 5 2 5 66666 5 3333 3 5 00000 77 3 555 3 0 111 5 5 77 222222 77 5 3333 88 0 2 55555555 0 5 4 5 4 55555555555 0 8888 4 3 5 5 4 4 0 3 5 5 3 000 3 2 666 5 5 0 88 0 5 555 3 2 4 111111111111 77 2 66666 0 77 555 2222 2 1111111 0 3 88 5 77 5 5 5 55 77 000000000 777777777777 4 5 2222 0 2222 5 88 5 2 55 2 5 5 111 4 5 3 88 77 3 111 3 5 77 77 5 111 2 3 3 6 3 5 00 6 99999 5 6 44 4 6666666 1 1 3 3 0 8 8 444 4444 7777 8 8 1 11 1 8 0 8 0 8 99 3 0 33 66 8 8 22222 8 4444444 1 99 33333 9999999999999999999999999999999999999999999999999999999999 44444444 4 4 88 666 3 3 888888888888888888888 3 3 1111111111111 88888 6666 333333333333333 555 555 3 3 555 77 33 3333333 1 2 33 33 00000 33 88888888888888888888 3 22 7 111 4 3 3 3 7 6 555 88888 3 555 44 3 5555 3 3 44444444444 3 1111111 3 3 55 3 55 5555555555 44444
lowQualScore : . . . .. . . .. .. . . . . .. . . . . . ........... .. . . . . . . . .. .. . . .. . .. .. ... . . . ... . .. .. . . . . . . . . . ..... . ............... ... .... .. .... . . .... .. .. . . . ..... . .... . . ..... .. . ... . . ... . . .. ...... .. . .... .. . . ........ . . . . . ........... . .... . . . . . . . . . . . ... . . ... . . . .. . . ... . . . ............ .. . ..... . .. ... .... . ....... . . .. . .. . . . .. .. ......... ............ . . .... . .... . .. . . .. . . . ... . . . .. .. . ... . . .. .. . ... . . . . . . .. . ..... . . .. . ....... . . . . . . . ... .... .... . . . .. . . . . . . .. . . .. .. . . ..... . ....... . .. ..... .......................................................... ........ . . .. ... . . ..................... . . ............. ..... .... ............... ... ... . . ... .. .. ....... . . .. .. ..... .. .................... . .. . ... . . . . . . ... ..... . ... .. . .... . . ........... . ....... . . .. . .. .......... .....
lowQualScore : 5 5 0 55 0 5 00 55 0 0 0 5 55 0 0 0 0 0 00000000000 55 0 5 5 0 0 5 5 55 00 0 0 00 5 00 55 000 0 5 5 000 0 00 55 0 0 5 0 0 5 0 0 5 00000 0 555555555555555 555 5555 55 5555 0 0 5555 55 00 0 5 5 00000 0 5555 0 0 00000 55 0 000 0 0 555 0 5 55 555555 55 0 0000 00 0 5 55555555 0 0 0 0 0 00000000000 0 5555 0 0 0 5 0 0 0 0 0 0 0 000 0 5 555 5 0 0 55 0 0 000 0 5 0 000000000000 55 5 00000 0 55 000 5555 5 5555555 0 0 55 5 55 5 0 0 00 00 000000000 000000000000 0 5 5555 0 5555 0 00 0 5 55 5 5 0 000 0 0 0 00 55 0 555 0 0 55 55 0 000 5 3 3 7 3 0 33 7 00000 3 7 00 0 7777777 0 0 3 2 0 0 0 000 8888 0000 0 0 0 88 4 0 8 0 8 0 00 2 0 88 66 0 0 44444 0 6666666 0 22 44444 8888888888888888888888888888888888888888888888888888888888 55555555 0 0 66 444 6 6 555555555555555555555 3 3 6666666666666 33333 5555 999999999999999 444 444 1 1 000 33 99 6666666 0 9 99 99 00000 88 55555555555555555555 3 55 3 444 5 6 6 6 3 7 888 55555 3 888 66 3 0000 6 6 00000000000 6 8888888 6 6 00 6 00 9999999999 33333
consensus : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGATGTG--AATAATTCGTCAAAGGGTCAAATCTATAAA-----AATT-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTTAAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----TAT----------------ATTCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG-AA--CATA--TA-----TG-TG--------------------TA-TGTAAT-AT---TNATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATAT----AA-T-TATATTTATAA----ATGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------TAA--A--TGAAAT
Reference ( family-2426 ) : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGTT--CTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACATTT-AGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAGAAAAA-TAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTATT-GATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAATG--ATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAACAGTGG-GCCAAACGATGTGTGAATAATTCGTCAAAGGGTCAAATCTATAAANNAAAAATTTTAAGGTAAACTTTGGCTTTGGCGAAATATNTTTAAGGGACAGGCTCTTTCAAAANANT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCNACAAATGACAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----TAT----------------NTTCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTANTG-AA--CATA--TA-----TA-TG--------------------TA-TGTAAT-AT---TNATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATAT----AA-T-TATATTTATAA----NTGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------TAA--A--TGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGTT--CTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACATTT-AGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAGAAAAA-TAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTATT-GATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAATG--ATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGT-G-GCCAAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATT-----TTTTAA-GTAAACTTTGGCTTTGGCGAAATATGTTTAAGGGACAGGTTCTTTCAAAAAAAT-TT--GGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAGC-CAGACG-ATACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGAT-TTGTCATGTA-CAAACACACTGAAATTTCAGAGAAT----TGAATGAGACTAATTCCAATTTTAAAAAC---TTTA--A--AAAAA----C----T---ATGTCA-TAT----------------TCTCATTTCT---------AAATCCAACGAG-TC-TAGTCGGGCTCCGATCCGCCATT--------------AC-----ATATTTA-CAAgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|1 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttat---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CTATTG-TT--CATG--TA-----TA-TGC-------------------TA-TGTAAT-AT---T-ATAT-A-CTT-GCTACC-CCTT---GAA--A--TAATTGCGTTTAAT-ATATTA--AA-TATATATTTATAA----ATG--A-------CCGTCA-TGTACCCCA-TT-ATA--ATGG----------Ttctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|10 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggcAAACTCTC-ATGATCT------------ATTT------T----A----T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CTATTG-TGCTCATAAGTA-----TACTG--------------------TA-TGTTATAAT---TAATAT-A-CTT-GTTACCACTTTTGGAAA--A--TA-TTG---TT--T-AAAT-----A-T-TATATTTATAAG---ATGTGA-------CC-TCA-TGTA---CA-TTGATA--ATGG----------Tttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|11 : gtaatT----------------ATTCATTTCTTTTACACTAAATTCAAG-GAG-TGTTTGTCTG---CTG-TCT-CTCTTAATGATATTTTTTAA------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AAG--T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CTAGTGAAA--TATA--TA-----TA-TG--------------------Tttgaggtgaataaataaagtgaaa
gi|12 : ----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CTATTG-AA--CATA--TA-----TG-TG--------------------TA-TGTATT-AT---TGAAAT-A-CTT-G-TACC-CTTT---GAA--A--TA-CTG---TT--T-ATAT----AA-T-TATATTCA-A-------GT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------Tttttt
gi|13 : TTG--TG-------CTAATG-AA---ACA--TA-----TG-TG--------------------CA-GGTTATTAT---TTATGT-AACTT-A-TATC-CTTG---GCA--A--TA-TTG---TT--TTATAT----AAAT-CATATTAA-AA----TTGT-ATTTAATACC-TCA-TGTA--CCA-TTG-TAAGATGGTT--------TGA--G--TGAAttgagcgaataaatgaattg
gi|14 : tTGACATCA--CTAAACTTT-AAAA--------------ACAA----T----T---ATG----TAT----------------ATTCATTTCT--------AAAATCCAG-GGG-T--TAG-----------------------------------------------ATCAAATTCCT-A-GATCT------------ATCT-----GT----A----G----T-----A---TCAAGCCTC-CTCC-TC---CTC--------CT--------------CATTG-AA--CTTA--TA-----TG-TG--------------------TA-Ttaatgaattaa
gi|16 : -CTTT---GAATGACCTA-TTG---T-----ATAT----A--T-TGTGT----------CTGT-A-------CC-TCA-TGTA--CTATTTGACA--ATGG----------
gi|17 : atcttactgtattatatgtgaaTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGG-TATGGAATG-CCTACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--CAGattgagcaaaacgaaaggacttgaa
gi|2 : ttgaTCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATGC-AGTAT-TATTCGTATGGTTGC---GAATTGGGGGAGGG-GAAAAT-CTA-ATGATTCAC--GGAAGTAGTGC-ATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGATGTG--AATAATTCGTCAAAGGGTCAAATCTATAAA-----AATTGTAAGGTAAACTTTGGCTTTGA-GAAATATTTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAGAAAGAAATAAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----TAT----------------TTTCACTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCTTT--------------A------ATATTTATCAAACTCTT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CTATTG-AA--CATG--CA-----TA-TG--------------------TA-TGTAAT-AT---TAATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATAT----AA-T-TATATTTATAA----TTGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------TAA--A--TGAAAT
gi|20 : ---TTCATGT--ATCTTG--TG-------CTAATA-AA--CATA--TA-----TG-TG--------------------T-------T-AT---TCATAT-A-TTT-G-TACC-CTTT---G-A--A--TA-TTG----T--T-ATAT----
gi|21 : gct------ATATTTG----ATTCCT-A-GATCT------------ATTT-----GT----AAGTAT----T-----A---A---GCCTC-CTCC-TC---TTCAT
gi|3 : tcGTT-TATACAACAGTGG-GC-AAACGATGTG--AATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAATT--AAGGTAAACTTTGGCTTTGA-GAAATAT--TTAAG---CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--CAGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAG-AA----TTAATGACATCA--TCAAATTTT-AAAACA--TTTGAAA--AAAAA----C----T---ATGGGCATAT----------------TTTCATTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCT-CCTTT--------------A------ATATTTATTAAACTCTT-A-GATCC------------AATT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CTATTG-AA--CATG--TA-----T-----------------------------TAAT-ATAC-TAGTA-----TT-G-TACC-CTCT---GAA--A--TA-TTG---TT--T-ATAT----AA-T-TATATTTATAA----ATGT-A-------CT-TCA-TATA--CCA-TTGATA--ATGGTTTGGCGAAATAA--A--TGAAAT
gi|4 : TTGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTT---TGCCAATAGAAGTAAGTAGGTAGGCGG-CATGGAATT-CCTACAATTGATAGAAA-CAGCACAC---G-T-GTACTGG-TAAATTAGTTCAGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGATA-----ATATACCAAGCACACTGCAT-TTCAGAG-AA----TTAAC----TTT--TTAAA-----AAAATCTATTT---ACCAGGTA----CATTGT---ATG----TATATATATATACATATATATTCATTTCT--------AAAG-CCAG-AAG-T--TAGTCTG---CTG-ACT-CCCTT--------------AATTATGATATTCATCAAATTCTC-A-AATCT------------GTTT-----GT----A----gaaa
gi|5 : TTCATTTCT--------AAAATCCAG-GAGTT--TTGTCTG---CT--TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AGTG-T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCTAGTG-AC--AATA--TAATTATTA-TGTTTTTTTTGGCTTTTT----TATTATCAT-ATGTATCACAC-A-TTTGG-TGCCAGTTT---GAA--T--AA-TTG---TT--T-ATATA---AA-T-CATAAAAATGAATCCATGT-A-------CC-TCGTTGTA--CAC-TAGATA--ATTG----------TAAATA--TGAAAa
gi|6 : TTCATTTCT--------AAAATCCAG-GAG-T--TTGTCTG---CTG-TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCTAA-GATCT-------------TTTGGTGAGT----G----T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CTAGTG-AA--CATA--TA-----TA-TATGTTTTTTTTGGGCTTTTTTTA-TTTCAT-AT---GTATACAA-TTT-G-TGCC-GTTT---GAA--T--AA-TTG---TT--T-ATAT----AA-T-CATAAAAATGAATCCATGT-A-------CC-TCA-TGTA--CCA-CTGATA--ATGG----------TAA--AATTGAA
gi|7 : CAAATTT--AAAAT---CTT---A--AAAAAAAACC----TCGCATG----TAT----------------ATTCATCTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ACATTTATCAAATTCCT-A-GATCT------------ACTT-----GT----A----TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CTATTG-AA--CATA--CA-----TA-TG--------------------TA-TGTATT-AT---TTATAT-A-CTT-C-TAC----------------------G---TC--T-ATCTGGGGAA-T-TATATT----A----ATGT-A-------CC-TCA-GGTA--CCA-TTGATA--ATGGTT--------TGA--G--TGAA
gi|8 : --TAGCCTG---CTG-GCC-CTCTT--------------G------ATATTTATCAAATTCCT-A-GATCTATTTGTAGATCTATTT-----GT----A----TGTATT-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CTTTTG-AA--CATA--TAA----TG-CG--------------------TA-TATATT-AT---TTATAT-A-CTT-G-TACC-CGTT---GAA--C--TA-TTG---TT--T-ATAT----AA-T-TATATTT--------CTGT-A-------CC-TCA-TGTA--CCA-TTGATA--ATGG----------Ttaaatgaattg
gi|9 : TATCAACTCTACGAAAAGAATT-TTTGACTTCT-A--------------CCAAACACACTGAAA-TTCAGAGAA-----TTAATGACATCA--TCGAA-------------------------------C----T---GTG----AAT----------------ATTCATTTCT--------AAACTCCAG-GAG-T--TGATCTG---CTG-TCC-CCCTT--------------T------GTATTTATCAAATTCCC-A-AATCT------------ATTT-----GTATACA----T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CTAATC-AA--CATA--TA-----TG-Tttgagcaaataaatgaattgaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATATCAAATGTATAGACATCGGAAATTTGTATAATATATACTAAATATACTAACTTACATGTATATATTCATGTACCTCATGAACCATCGTATGATTGGTTTGAGTGAATAAATGGATTGA
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT
Alignments
lowQualScore : 1 1 11 1 1 11 1 1 1 11 1 1 1 222 22222 11 1 1 1 1 11 1 11 11 11 1 1 222 11 11 1 1 1 1 1 22222 1 444444444444444 222 2222 11 2222 2222 11 11 1 1 22222 1 2222 1 22222 11 222 1 222 1 1 11 222 1 11 1 2222 1 22222222 1 1 1 44444444444 1 11 1 1 1 1 1 222 1 1 1 1 11 1 1 222 11 22222 11 22222 1 11 222 2222 3333333 1 11 1 11 1 1 1 1 222222 444444444444 1 2222 1 2222 1 11 1 1 1 222 1 11 11 222 1 11 11 1 222 1 1 1111 11 333333 1 1 22 222 11 1 1 111 1111 1111 11 1 11 11111 2222222 11111 4444444444444444444444444444444444444444444444444444444444 11111111 666666666666666666666 2222222222222 222222222222222 2222222 11111 11111111 33333333333333333333 111 1111 33333333333 1111111 2222222222 11111
lowQualScore : 5 1 5 66 5 5 22 88 5 5 1 5 88 5 5 1 1 5 000 77777 88 5 1 1 5 5 5 1 22 88 1 5 88 1 88 77 333 5 1 5 000 1 88 88 5 1 5 5 1 5 5 1 1 77777 5 111111111111111 000 3333 88 4444 1 1 3333 88 88 5 1 5 77777 5 3333 1 5 66666 88 1 111 1 5 111 5 5 77 111 5 88 5 3333 22 5 2 11111111 5 5 1 5 1 55555555555 5 88 1 1 1 5 5 1 1 5 1 5 5 1 000 1 1 1 5 5 5 5 88 5 5 111 1 1 1 88 2 77777 88 2 11111 5 88 111 4444 1 1111111 5 2 88 5 88 5 5 5 22 22 5 999999 777777777777 1 5 4444 5 4444 5 88 5 1 22 2 5 5 111 1 5 1 88 77 2 111 1 5 77 77 5 111 1 3 3 5555 88 6 222222 3 3 00 333 88 3 3 0 8 8 444 4444 7777 8 8 1 11 8 8 0 8 0 8 99 3 0 33 66 8 8 22222 8 4444444 1 99 33333 4444444444444444444444444444444444444444444444444444444444 55 44444444 4 4 88 666 3 3 888888888888888888888 3 3 1111111111111 88888 6666 333333333333333 555 555 3 3 555 77 33 3333333 1 66 33 11111 2 22222222 88888888888888888888 3 22 7 111 4 3 3 3 7 6 555 88888 3 555 44 3 3 3333 6 3 55555555555 3 0000000 3 3 44 3 3 44 3 8888888888 33333
lowQualScore : . . . .. . . .. .. . . . . .. . . . . . ... ..... .. . . . . . . . .. .. . . .. . .. .. ... . . . ... . .. .. . . . . . . . . . ..... . ............... ... .... .. .... . . .... .. .. . . . ..... . .... . . ..... .. . ... . . ... . . .. ... . .. . .... .. . . ........ . . . . . ........... . .. . . . . . . . . . . . . ... . . . . . . . .. . . ... . . . .. . ..... .. . ..... . .. ... .... . ....... . . .. . .. . . . .. .. . ...... ............ . . .... . .... . .. . . .. . . . ... . . . .. .. . ... . . .. .. . ... . . . .... .. . ...... . . .. ... .. . . . . . ... .... .... . . . .. . . . . . . .. . . .. .. . . ..... . ....... . .. ..... .......................................................... .. ........ . . .. ... . . ..................... . . ............. ..... .... ............... ... ... . . ... .. .. ....... . .. .. ..... . ........ .................... . .. . ... . . . . . . ... ..... . ... .. . . .... . . ........... . ....... . . .. . . .. . .......... .....
lowQualScore : 5 0 0 00 0 5 00 00 0 5 0 5 00 5 0 0 0 5 555 00000 55 0 0 0 0 0 5 0 00 00 0 0 00 0 00 55 000 0 0 5 555 0 00 55 5 0 5 0 0 5 0 0 0 00000 0 555555555555555 555 5555 55 0000 0 0 5555 00 00 0 0 5 00000 0 5555 0 0 00000 55 0 000 0 5 555 0 5 55 555 0 00 0 0000 00 5 5 55555555 5 0 0 0 0 00000000000 5 55 0 0 0 0 5 0 0 5 0 0 0 0 000 0 0 0 0 5 0 0 55 5 0 000 0 0 0 00 5 00000 00 5 55555 0 00 000 0000 0 5555555 5 5 55 5 00 5 0 0 00 00 0 000000 000000000000 0 5 5555 5 0000 0 00 0 0 00 5 5 0 000 0 0 0 00 55 5 555 0 0 55 55 0 000 0 3 3 0000 33 7 777777 3 3 77 777 33 3 2 0 0 0 000 8888 0000 0 0 4 88 6 0 8 0 8 0 00 2 0 88 66 0 0 44444 0 6666666 0 22 44444 6666666666666666666666666666666666666666666666666666666666 55 55555555 0 0 66 444 6 6 555555555555555555555 3 3 6666666666666 33333 5555 999999999999999 444 444 1 1 000 33 99 6666666 7 88 99 11111 9 66666666 11111111111111111111 3 55 3 444 5 6 6 6 3 7 888 55555 3 888 22 1 1 8888 7 3 77777777777 3 8888888 3 3 66 3 3 66 3 3333333333 11111
consensus : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AA--CATA-----TA-TG-------TG--------------------TA-TGTAAT-AT---TNATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG----------TGA--G--TGAAAT
Reference ( family-2426 ) : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AA--CATA-----TA-TG-------TG--------------------TA-TGTAAT-AT---TNATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG----------TAA--A--TGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGTT--CTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACATTT-AGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAGAAAAA-TAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTATT-GATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAAT--GATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGTGG-CC-AAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATTT----T-TTAAGTAAACTTTGGCTTTGGCGAAATATGTTT-AAGGGACAGGTTCTTTCAAAAAAAT-TT--GGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAGC-CAGACG-ATACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGAT-TTGTCATGTA-CAAACACACTGAAATTTCAGAGAAT----TGAATGAGACTAATTCCAATTTTAAAAAC---TTTA--A--AAAAA----C----T---ATG----TCAT----------------ATTCTCATTTCT---------AAATCCAACGAG-TC-TAGTCGGGCTCCGATCCGCCATT--------------AC-----ATATTTA-CAAgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|1 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttat---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CTATTG--TT--CATG-----TA-TA-------TGC-------------------TA-TGTAAT-AT---T-ATAT-A-CTT-GCTACC-CCTT---GAA--A--TAATTGCGTTTAAT-ATA-TTA--AA-TATATATTTATA-A----ATG--A-------CCGTCA-TGTACCCCA-TT--ATA--A-TGG----------Ttctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|10 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggcAAACTCTC-ATGATCT------------ATTT------T----A----T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CTATTG--TGCTCATAAG---TA-TAC------TG--------------------TA-TGTTATAAT---TAATAT-A-CTT-GTTACCACTTTTGGAAA--A--TA-TTG---TT--T-AAA-T-----A-T-TATATTTATA-AG---ATGTGA-------CC-TCA-TGTA---CA-TTG-ATA--A-TGG----------Tttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|11 : gtaatT----------------AT--TCATTTCTTTTACACTAAATTCAAG-GAG-TGTTTGTCTG---CTG-TCT-CTCTTAATGATATTTTTTAA------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AAG--T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CTAGTGA-AA--TATA-----TA-TA-------TG--------------------Tttgaggtgaataaataaagtgaaa
gi|12 : ----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CTATTG--AA--CATA-----TA-TG-------TG--------------------TA-TGTATT-AT---TGAAAT-A-CTT-G-TACC-CTTT---GAA--A--TA-CTG---TT--T-ATA-T----AA-T-TATATTCA-A--------GT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG----------Tttttt
gi|13 : TTG--TG-------CTAATG--AA---ACA-----TA-TG-------TG--------------------CA-GGTTATTAT---TTATGT-AACTT-A-TATC-CTTG---GCA--A--TA-TTG---TT--TTATA-T----AAAT-CATATTAA-A-A----TTGT-ATTTAATACC-TCA-TGTA--CCA-TTG--TAAGA-TGGTT--------TGA--G--TGAAttgagcgaataaatgaattg
gi|14 : tTGACATCA--CTAAACTTT-AAAA--------------ACAA----T----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GGG-T--TAG-----------------------------------------------ATCAAATTCCT-A-GATCT------------ATCT-----GT----A----G----T-----A---TCAAGCCTC-CTCC-TC---CTC--------CT--------------CATTG--AA--CTTA-----TA-TG-------TG--------------------TA-Ttaatgaattaa
gi|15 : --T-ATACT----AACT-TACATGTATATATTC-ATGT-A-------CC-TCA-TGAA--CCA-TCGTATG--ATTGGTT--------TGA--G--TGAA
gi|16 : atatcaaatgtatagacatcggaaatttgtataatatatactaaa-CTTT---GAATGACCTA-TTG---T-----ATA-T----A--T-TGTGTCT-----------GT-A-------CC-TCA-TGTA--CTATTTG-ACA--A-TGG----------taaatggattga
gi|17 : atcttactgtattatatgtgaaTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGG-TATGGAATG-CCTACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--CAGattgagcaaaacgaaaggacttgaa
gi|2 : ttgaTCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATGC-AGTAT-TATTCGTATGGTTGC---GAATTGGGGGAGGG-GAAAAT-CTA-ATGATTCAC--GGAAGTAGTGC-ATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----TGTAAGGTAAACTTTGGCTTTGA-GAAATAT-TTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAGAAAGAAATAAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------TT--TCACTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCTTT--------------A------ATATTTATCAAACTCTT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CTATTG--AA--CATG-----CA-TA-------TG--------------------TA-TGTAAT-AT---TAATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----TTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG----------TAA--A--TGAAAT
gi|20 : ---TTCATGT--ATCTTG--TG-------CTAATA--AA--CATA-----TA-TG-------TG--------------------T-------T-AT---TCATAT-A-TTT-G-TACC-CTTT---G-A--A--TA-TTG----T--T-ATA-T----
gi|21 : gct------ATATTTG----ATTCCT-A-GATCT------------ATTT-----GT----AAGTAT----T-----A---A---GCCTC-CTCC-TC---TTCAT
gi|3 : tcGTT-TATACAACAGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAAT-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TT--AAG---CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--CAGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAG-AA----TTAATGACATCA--TCAAATTTT-AAAACA--TTTGAAA--AAAAA----C----T---ATGGGCAT-AT----------------TT--TCATTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCT-CCTTT--------------A------ATATTTATTAAACTCTT-A-GATCC------------AATT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CTATTG--AA--CATG-----TA-T-----------------------------------TAAT-ATAC-TAGTA-----TT-G-TACC-CTCT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CT-TCA-TATA--CCA-TTG-ATA--A-TGGTTTGGCGAAATAA--A--TGAAAT
gi|4 : TTGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTT---TGCCAATAGAAGTAAGTAGGTAGGCGG-CATGGAATT-CCTACAATTGATAGAAA-CAGCACAC---G-T-GTACTGG-TAAATTAGTTCAGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGATA-----ATATACCAAGCACACTGCAT-TTCAGAG-AA----TTAAC----TTT--TTAAA-----AAAATCTATTT---ACCAGGTA----CATTGT---ATG----T-ATATATATATACATATATAT--TCATTTCT--------AAAG-CCAG-AAG-T--TAGTCTG---CTG-ACT-CCCTT--------------AATTATGATATTCATCAAATTCTC-A-AATCT------------GTTT-----GT----A----gaaa
gi|5 : T--TCATTTCT--------AAAATCCAG-GAGTT--TTGTCTG---CT--TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AGTG-T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCTAGTGACAA--TATAATTATTA-TGTTTTTTTTGGCTTTTT-------------TATTATCAT-ATGTATCACAC-A-TTTGG-TGCCAGTTT---GAA--T--AA-TTG---TT--T-ATA-TA---AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCGTTGTA--CAC-TAG-ATA--A-TTG----------TAAATA--TGAAAa
gi|6 : T--TCATTTCT--------AAAATCCAG-GAG-T--TTGTCTG---CTG-TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCTAA-GATCT-------------TTTGGTGAGT----G----T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CTAGTG--AA--CATA-----TA-TA-------TATGTTTTTTTTGGGCTTTTTTTA-TTTCAT-AT---GTATACAA-TTT-G-TGCC-GTTT---GAA--T--AA-TTG---TT--T-ATA-T----AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCA-TGTA--CCA-CTG-ATA--A-TGG----------TAA--AATTGAA
gi|7 : CAAATTT--AAAAT---CTT---A--AAAAAAAACC----TCGCATG----T-AT----------------AT--TCATCTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ACATTTATCAAATTCCT-A-GATCT------------ACTT-----GT----A----TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CTATTG--AA--CATA-----CA-TA-------TG--------------------TA-TGTATT-AT---TTATAT-A-CTT-C-TAC----------------------G---TC--T-ATC-TGGGGAA-T-TATATT-----A----ATGT-A-------CC-TCA-GGTA--CCA-TTG-ATA--A-TGGTT--------TGA--G--TGAA
gi|8 : --TAGCCTG---CTG-GCC-CTCTT--------------G------ATATTTATCAAATTCCT-A-GATCTATTTGTAGATCTATTT-----GT----A----TGTATT-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CTTTTG--AA--CATA-----TAATG-------CG--------------------TA-TATATT-AT---TTATAT-A-CTT-G-TACC-CGTT---GAA--C--TA-TTG---TT--T-ATA-T----AA-T-TATATTT---------CTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG----------Ttaaatgaattg
gi|9 : TATCAACTCTACGAAAAGAATT-TTTGACTTCT-A--------------CCAAACACACTGAAA-TTCAGAGAA-----TTAATGACATCA--TCGAA-------------------------------C----T---GTG----A-AT----------------AT--TCATTTCT--------AAACTCCAG-GAG-T--TGATCTG---CTG-TCC-CCCTT--------------T------GTATTTATCAAATTCCC-A-AATCT------------ATTT-----GTATACA----T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CTAATC--AA--CATA-----TA-TG-------Tttgagcaaataaatgaattgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT
Alignments
lowQualScore : 1 1 11 1 1 11 1 1 1 11 1 1 1 222 22222 11 1 1 1 1 11 1 11 11 11 1 1 222 11 11 1 1 1 1 1 22222 1 444444444444444 222 2222 11 2222 2222 11 11 1 1 22222 1 2222 1 22222 11 222 1 222 1 1 11 222 1 11 1 2222 1 22222222 1 1 1 44444444444 1 11 1 1 1 1 1 222 1 1 1 1 11 1 1 222 11 22222 11 22222 1 11 222 2222 3333333 1 11 1 11 1 1 1 1 222222 444444444444 1 2222 1 2222 1 11 1 1 1 222 1 11 11 222 1 11 11 1 222 1 1 1111 11 333333 1 1 22 222 11 1 1 111 1111 1111 11 1 11 11111 2222222 11111 4444444444444444444444444444444444444444444444444444444444 11111111 666666666666666666666 2222222222222 222222222222222 2222222 11111 11111111 33333333333333333333 111 1111 33333333333 1111111 44
lowQualScore : 5 1 5 66 5 5 22 88 5 5 1 5 88 5 5 1 1 5 000 77777 88 5 1 1 5 5 5 1 22 88 1 5 88 1 88 77 333 5 1 5 000 1 88 88 5 1 5 5 1 5 5 1 1 77777 5 111111111111111 000 3333 88 4444 1 1 3333 88 88 5 1 5 77777 5 3333 1 5 66666 88 1 111 1 5 111 5 5 77 111 5 88 5 3333 22 5 2 11111111 5 5 1 5 1 55555555555 5 88 1 1 1 5 5 1 1 5 1 5 5 1 000 1 1 1 5 5 5 5 88 5 5 111 1 1 1 88 2 77777 88 2 11111 5 88 111 4444 1 1111111 5 2 88 5 88 5 5 5 22 22 5 999999 777777777777 1 5 4444 5 4444 5 88 5 1 22 2 5 5 111 1 5 1 88 77 2 111 1 5 77 77 5 111 1 3 3 5555 88 6 222222 3 3 00 333 88 3 3 0 8 8 444 4444 7777 8 8 1 11 8 8 0 8 0 8 99 3 0 33 66 8 8 22222 8 4444444 1 99 33333 4444444444444444444444444444444444444444444444444444444444 55 44444444 4 4 88 666 3 3 888888888888888888888 3 3 1111111111111 88888 6666 333333333333333 555 555 3 3 555 77 33 3333333 1 66 33 11111 2 22222222 88888888888888888888 3 22 7 111 4 3 3 3 7 6 555 88888 3 555 44 3 3 3333 6 3 55555555555 3 0000000 3 3 44 3 3 44 3 11 3 77 44
lowQualScore : . . . .. . . .. .. . . . . .. . . . . . ... ..... .. . . . . . . . .. .. . . .. . .. .. ... . . . ... . .. .. . . . . . . . . . ..... . ............... ... .... .. .... . . .... .. .. . . . ..... . .... . . ..... .. . ... . . ... . . .. ... . .. . .... .. . . ........ . . . . . ........... . .. . . . . . . . . . . . . ... . . . . . . . .. . . ... . . . .. . ..... .. . ..... . .. ... .... . ....... . . .. . .. . . . .. .. . ...... ............ . . .... . .... . .. . . .. . . . ... . . . .. .. . ... . . .. .. . ... . . . .... .. . ...... . . .. ... .. . . . . . ... .... .... . . . .. . . . . . . .. . . .. .. . . ..... . ....... . .. ..... .......................................................... .. ........ . . .. ... . . ..................... . . ............. ..... .... ............... ... ... . . ... .. .. ....... . .. .. ..... . ........ .................... . .. . ... . . . . . . ... ..... . ... .. . . .... . . ........... . ....... . . .. . . .. . .. . .. ..
lowQualScore : 5 0 0 00 0 5 00 00 0 5 0 5 00 5 0 0 0 5 555 00000 55 0 0 0 0 0 5 0 00 00 0 0 00 0 00 55 000 0 0 5 555 0 00 55 5 0 5 0 0 5 0 0 0 00000 0 555555555555555 555 5555 55 0000 0 0 5555 00 00 0 0 5 00000 0 5555 0 0 00000 55 0 000 0 5 555 0 5 55 555 0 00 0 0000 00 5 5 55555555 5 0 0 0 0 00000000000 5 55 0 0 0 0 5 0 0 5 0 0 0 0 000 0 0 0 0 5 0 0 55 5 0 000 0 0 0 00 5 00000 00 5 55555 0 00 000 0000 0 5555555 5 5 55 5 00 5 0 0 00 00 0 000000 000000000000 0 5 5555 5 0000 0 00 0 0 00 5 5 0 000 0 0 0 00 55 5 555 0 0 55 55 0 000 0 3 3 0000 33 7 777777 3 3 77 777 33 3 2 0 0 0 000 8888 0000 0 0 4 88 6 0 8 0 8 0 00 2 0 88 66 0 0 44444 0 6666666 0 22 44444 6666666666666666666666666666666666666666666666666666666666 55 55555555 0 0 66 444 6 6 555555555555555555555 3 3 6666666666666 33333 5555 999999999999999 444 444 1 1 000 33 99 6666666 7 88 99 11111 9 66666666 11111111111111111111 3 55 3 444 5 6 6 6 3 7 888 55555 3 888 22 1 1 8888 7 3 77777777777 3 8888888 3 3 66 3 3 66 3 22 3 99 66
consensus : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AA--CATA-----TA-TG-------TG--------------------TA-TGTAAT-AT---TNATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-A--G--CGAAAT
Reference ( family-2426 ) : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AA--CATA-----TA-TG-------TG--------------------TA-TGTAAT-AT---TNATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG--TG-A--G--TGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGTT--CTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACATTT-AGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAGAAAAA-TAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTATT-GATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAAT--GATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGTGG-CC-AAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATTT----T-TTAAGTAAACTTTGGCTTTGGCGAAATATGTTT-AAGGGACAGGTTCTTTCAAAAAAAT-TT--GGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAGC-CAGACG-ATACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGAT-TTGTCATGTA-CAAACACACTGAAATTTCAGAGAAT----TGAATGAGACTAATTCCAATTTTAAAAAC---TTTA--A--AAAAA----C----T---ATG----TCAT----------------ATTCTCATTTCT---------AAATCCAACGAG-TC-TAGTCGGGCTCCGATCCGCCATT--------------AC-----ATATTTA-CAAgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|1 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttat---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CTATTG--TT--CATG-----TA-TA-------TGC-------------------TA-TGTAAT-AT---T-ATAT-A-CTT-GCTACC-CCTT---GAA--A--TAATTGCGTTTAAT-ATA-TTA--AA-TATATATTTATA-A----ATG--A-------CCGTCA-TGTACCCCA-TT--ATA--A-TGGTTTGTA--G--TGAAtctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|10 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggcAAACTCTC-ATGATCT------------ATTT------T----A----T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CTATTG--TGCTCATAAG---TA-TAC------TG--------------------TA-TGTTATAAT---TAATAT-A-CTT-GTTACCACTTTTGGAAA--A--TA-TTG---TT--T-AAA-T-----A-T-TATATTTATA-AG---ATGTGA-------CC-TCA-TGTA---CA-TTG-ATA--A-TGGTTTG-AG-G--TGAAtgaccaatacatcctacaaaaaatgaa
gi|11 : gtaatT----------------AT--TCATTTCTTTTACACTAAATTCAAG-GAG-TGTTTGTCTG---CTG-TCT-CTCTTAATGATATTTTTTAA------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AAG--T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CTAGTGA-AA--TATA-----TA-TA-------TG--------------------Ttaaataaagtgaaa
gi|12 : ----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CTATTG--AA--CATA-----TA-TG-------TG--------------------TA-TGTATT-AT---TGAAAT-A-CTT-G-TACC-CTTT---GAA--A--TA-CTG---TT--T-ATA-T----AA-T-TATATTCA-A--------GT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-A--G--CGAAttttt
gi|13 : TTG--TG-------CTAATG--AA---ACA-----TA-TG-------TG--------------------CA-GGTTATTAT---TTATGT-AACTT-A-TATC-CTTG---GCA--A--TA-TTG---TT--TTATA-T----AAAT-CATATTAA-A-A----TTGT-ATTTAATACC-TCA-TGTA--CCA-TTG--TAAGA-TGGTTTG-A--G--TGAAtaaatgaattg
gi|14 : tTGACATCA--CTAAACTTT-AAAA--------------ACAA----T----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GGG-T--TAG-----------------------------------------------ATCAAATTCCT-A-GATCT------------ATCT-----GT----A----G----T-----A---TCAAGCCTC-CTCC-TC---CTC--------CT--------------CATTG--AA--CTTA-----TA-TG-------TG--------------------TA-Ttaatgaattaa
gi|15 : --T-ATACT----AACT-TACATGTATATATTC-ATGT-A-------CC-TCA-TGAA--CCA-TCGTATG--ATTGGTTTG-A--G--TGAA
gi|16 : atatcaaatgtatagacatcggaaatttgtataatatatactaaa-CTTT---GAATGACCTA-TTG---T-----ATA-T----A--T-TGTGTCT-----------GT-A-------CC-TCA-TGTA--CTATTTG-ACA--A-TGGATTG-A--G--CAAAAtaaatggattga
gi|17 : atcttactgtattatatgtgaaTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGG-TATGGAATG-CCTACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--CAGcgaaaggacttgaa
gi|2 : ttgaTCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATGC-AGTAT-TATTCGTATGGTTGC---GAATTGGGGGAGGG-GAAAAT-CTA-ATGATTCAC--GGAAGTAGTGC-ATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----TGTAAGGTAAACTTTGGCTTTGA-GAAATAT-TTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAGAAAGAAATAAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------TT--TCACTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCTTT--------------A------ATATTTATCAAACTCTT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CTATTG--AA--CATG-----CA-TA-------TG--------------------TA-TGTAAT-AT---TAATAT-A-CTT-G-TACC-CTTT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----TTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG--TA-A--A--TGAAAT
gi|20 : ---TTCATGT--ATCTTG--TG-------CTAATA--AA--CATA-----TA-TG-------TG--------------------T-------T-AT---TCATAT-A-TTT-G-TACC-CTTT---G-A--A--TA-TTG----T--T-ATA-T----
gi|21 : gct------ATATTTG----ATTCCT-A-GATCT------------ATTT-----GT----AAGTAT----T-----A---A---GCCTC-CTCC-TC---TTCAT
gi|3 : tcGTT-TATACAACAGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAAT-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TT--AAG---CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--CAGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAG-AA----TTAATGACATCA--TCAAATTTT-AAAACA--TTTGAAA--AAAAA----C----T---ATGGGCAT-AT----------------TT--TCATTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCT-CCTTT--------------A------ATATTTATTAAACTCTT-A-GATCC------------AATT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CTATTG--AA--CATG-----TA-T-----------------------------------TAAT-ATAC-TAGTA-----TT-G-TACC-CTCT---GAA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CT-TCA-TATA--CCA-TTG-ATA--A-TGGTTTG----G--CGAAAT
gi|4 : TTGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTT---TGCCAATAGAAGTAAGTAGGTAGGCGG-CATGGAATT-CCTACAATTGATAGAAA-CAGCACAC---G-T-GTACTGG-TAAATTAGTTCAGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGATA-----ATATACCAAGCACACTGCAT-TTCAGAG-AA----TTAAC----TTT--TTAAA-----AAAATCTATTT---ACCAGGTA----CATTGT---ATG----T-ATATATATATACATATATAT--TCATTTCT--------AAAG-CCAG-AAG-T--TAGTCTG---CTG-ACT-CCCTT--------------AATTATGATATTCATCAAATTCTC-A-AATCT------------GTTT-----GT----A----aaatgaaatgaaa
gi|5 : T--TCATTTCT--------AAAATCCAG-GAGTT--TTGTCTG---CT--TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AGTG-T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCTAGTGACAA--TATAATTATTA-TGTTTTTTTTGGCTTTTT-------------TATTATCAT-ATGTATCACAC-A-TTTGG-TGCCAGTTT---GAA--T--AA-TTG---TT--T-ATA-TA---AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCGTTGTA--CAC-TAG-ATA--A-TTG--TA-AATA--TGAAAa
gi|6 : T--TCATTTCT--------AAAATCCAG-GAG-T--TTGTCTG---CTG-TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCTAA-GATCT-------------TTTGGTGAGT----G----T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CTAGTG--AA--CATA-----TA-TA-------TATGTTTTTTTTGGGCTTTTTTTA-TTTCAT-AT---GTATACAA-TTT-G-TGCC-GTTT---GAA--T--AA-TTG---TT--T-ATA-T----AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCA-TGTA--CCA-CTG-ATA--A-TGG--TA-A--AATTGAA
gi|7 : CAAATTT--AAAAT---CTT---A--AAAAAAAACC----TCGCATG----T-AT----------------AT--TCATCTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ACATTTATCAAATTCCT-A-GATCT------------ACTT-----GT----A----TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CTATTG--AA--CATA-----CA-TA-------TG--------------------TA-TGTATT-AT---TTATAT-A-CTT-C-TAC----------------------G---TC--T-ATC-TGGGGAA-T-TATATT-----A----ATGT-A-------CC-TCA-GGTA--CCA-TTG-ATA--A-TGGTTTG-A--G--TGAA
gi|8 : --TAGCCTG---CTG-GCC-CTCTT--------------G------ATATTTATCAAATTCCT-A-GATCTATTTGTAGATCTATTT-----GT----A----TGTATT-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CTTTTG--AA--CATA-----TAATG-------CG--------------------TA-TATATT-AT---TTATAT-A-CTT-G-TACC-CGTT---GAA--C--TA-TTG---TT--T-ATA-T----AA-T-TATATTT---------CTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-A--G--CAAAtaaatgaattg
gi|9 : TATCAACTCTACGAAAAGAATT-TTTGACTTCT-A--------------CCAAACACACTGAAA-TTCAGAGAA-----TTAATGACATCA--TCGAA-------------------------------C----T---GTG----A-AT----------------AT--TCATTTCT--------AAACTCCAG-GAG-T--TGATCTG---CTG-TCC-CCCTT--------------T------GTATTTATCAAATTCCC-A-AATCT------------ATTT-----GTATACA----T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CTAATC--AA--CATA-----TA-TG-------Ttaaatgaattgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT
Alignments
lowQualScore : 1 1 11 1 1 11 1 1 1 11 1 1 1 222 22222 11 1 1 1 1 11 1 11 11 11 1 1 222 11 11 1 1 1 1 1 22222 1 444444444444444 222 2222 11 2222 2222 11 11 1 1 22222 1 2222 1 22222 11 222 1 222 1 1 11 222 1 11 1 2222 1 22222222 1 1 1 44444444444 1 11 1 1 1 1 1 222 1 1 1 1 11 1 1 222 11 22222 11 22222 1 11 222 2222 3333333 1 11 1 11 1 1 1 1 222222 444444444444 1 2222 1 2222 1 11 1 1 1 222 1 11 11 222 1 11 11 1 222 1 1 1111 11 333333 1 1 22 222 11 1 1 111 1111 1111 11 1 11 11111 2222222 11111 4444444444444444444444444444444444444444444444444444444444 11111111 666666666666666666666 2222222222222 222222222222222 2222222 11111 11111111 33333333333333333333 111 1111 33333333333 1111111
lowQualScore : 5 1 5 66 5 5 22 88 5 5 1 5 88 5 5 1 1 5 000 77777 88 5 1 1 5 5 5 1 22 88 1 5 88 1 88 77 333 5 1 5 000 1 88 88 5 1 5 5 1 5 5 1 1 77777 5 111111111111111 000 3333 88 4444 1 1 3333 88 88 5 1 5 77777 5 3333 1 5 66666 88 1 111 1 5 111 5 5 77 111 5 88 5 3333 22 5 2 11111111 5 5 1 5 1 55555555555 5 88 1 1 1 5 5 1 1 5 1 5 5 1 000 1 1 1 5 5 5 5 88 5 5 111 1 1 1 88 2 77777 88 2 11111 5 88 111 4444 1 1111111 5 2 88 5 88 5 5 5 22 22 5 999999 777777777777 1 5 4444 5 4444 5 88 5 1 22 2 5 5 111 1 5 1 88 77 2 111 1 5 77 77 5 111 1 3 3 5555 88 6 222222 3 3 00 333 88 3 3 0 8 8 444 4444 7777 8 8 1 11 8 8 0 8 0 8 99 3 0 33 66 8 8 22222 8 4444444 1 99 33333 4444444444444444444444444444444444444444444444444444444444 55 44444444 4 4 88 666 3 3 888888888888888888888 3 3 1111111111111 88888 6666 333333333333333 555 555 3 3 555 77 33 3333333 1 66 33 11111 2 22222222 88888888888888888888 3 22 3 3 111 4 3 3 3 3 3 77 44 88888 3 555 44 3 3 3333 6 3 55555555555 3 0000000 3 3 44 3 3 44 3 4
lowQualScore : . . . .. . . .. .. . . . . .. . . . . . ... ..... .. . . . . . . . .. .. . . .. . .. .. ... . . . ... . .. .. . . . . . . . . . ..... . ............... ... .... .. .... . . .... .. .. . . . ..... . .... . . ..... .. . ... . . ... . . .. ... . .. . .... .. . . ........ . . . . . ........... . .. . . . . . . . . . . . . ... . . . . . . . .. . . ... . . . .. . ..... .. . ..... . .. ... .... . ....... . . .. . .. . . . .. .. . ...... ............ . . .... . .... . .. . . .. . . . ... . . . .. .. . ... . . .. .. . ... . . . .... .. . ...... . . .. ... .. . . . . . ... .... .... . . . .. . . . . . . .. . . .. .. . . ..... . ....... . .. ..... .......................................................... .. ........ . . .. ... . . ..................... . . ............. ..... .... ............... ... ... . . ... .. .. ....... . .. .. ..... . ........ .................... . .. . . ... . . . . . . .. .. ..... . ... .. . . .... . . ........... . ....... . . .. . . .. . .
lowQualScore : 5 0 0 00 0 5 00 00 0 5 0 5 00 5 0 0 0 5 555 00000 55 0 0 0 0 0 5 0 00 00 0 0 00 0 00 55 000 0 0 5 555 0 00 55 5 0 5 0 0 5 0 0 0 00000 0 555555555555555 555 5555 55 0000 0 0 5555 00 00 0 0 5 00000 0 5555 0 0 00000 55 0 000 0 5 555 0 5 55 555 0 00 0 0000 00 5 5 55555555 5 0 0 0 0 00000000000 5 55 0 0 0 0 5 0 0 5 0 0 0 0 000 0 0 0 0 5 0 0 55 5 0 000 0 0 0 00 5 00000 00 5 55555 0 00 000 0000 0 5555555 5 5 55 5 00 5 0 0 00 00 0 000000 000000000000 0 5 5555 5 0000 0 00 0 0 00 5 5 0 000 0 0 0 00 55 5 555 0 0 55 55 0 000 0 3 3 0000 33 7 777777 3 3 77 777 33 3 2 0 0 0 000 8888 0000 0 0 4 88 6 0 8 0 8 0 00 2 0 88 66 0 0 44444 0 6666666 0 22 44444 6666666666666666666666666666666666666666666666666666666666 55 55555555 0 0 66 444 6 6 555555555555555555555 3 3 6666666666666 33333 5555 999999999999999 444 444 1 1 000 33 99 6666666 7 88 99 11111 9 66666666 11111111111111111111 3 55 6 6 444 5 6 6 6 6 6 99 66 55555 3 888 22 1 1 8888 7 3 77777777777 3 8888888 3 3 66 3 3 66 3 0
consensus : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
Reference ( family-2426 ) : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGT--TCTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACA-TTTAGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAG-AAAAATAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTA-TTGATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAAT--GATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGTGG-CC-AAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATTT----T-TTAAGTAAACTTTGGCTTTGGCGAAATATGTTT-AAGGGACAGGTTCTTTCAAAAAAAT-TT--GGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAGC-CAGACG-ATACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGAT-TTGTCATGTA-CAAACACACTGAAATTTCAGAGAAT----TGAATGAGACTAATTCCAATTTTAAAAAC---TTTA--A--AAAAA----C----T---ATG----TCAT----------------ATTCTCATTTCT---------AAATCCAACGAG-TC-TAGTCGGGCTCCGATCCGCCATT--------------AC-----ATATTTA-CAAgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|1 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttat---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CTATTG--TTC--ATG-----TA-TA-------TGC-------------------TA-TGTAAT-A-T---T-ATAT-A-CTT-GCT-ACC--CCTTG--AA--A--TAATTGCGTTTAAT-ATA-TTA--AA-TATATATTTATA-A----ATG--A-------CCGTCA-TGTACCCCA-TT--ATA--A-TGGTTTGTAGTGAAtctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|10 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggcAAACTCTC-ATGATCT------------ATTT------T----A----T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CTATTG--TGCTCATAAG---TA-TAC------TG--------------------TA-TGTTAT-AAT---TAATAT-A-CTT-G-TTACCACTTTTGGAAA--A--TA-TTG---TT--T-AAA-T----A--T-TATATTTATA-AG---ATGTGA-------CC-TCA-TGTA--C-A-TTG-ATA--A-TGGTTTG-AGtgaccaatacatcctacaaaaaatgaa
gi|11 : gtaatT----------------AT--TCATTTCTTTTACACTAAATTCAAG-GAG-TGTTTGTCTG---CTG-TCT-CTCTTAATGATATTTTTTAA------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AAG--T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CTAGTGA-AAT--ATA-----TA-TA-------TG--------------------Tgtgaataaataaagtgaaa
gi|12 : ----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTATT-A-T---TGAAAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-CTG---TT--T-ATA-T----AA-T-TATATTCA-A--------GT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAttttt
gi|13 : TTG--TG-------CTAATG--AA---ACA-----TA-TG-------TG--------------------CA-GGTTATTA-T---TTATGT-AACTT-A-T-ATC--CTTGG--CA--A--TA-TTG---TT--TTATA-T----AAAT-CATATTAA-A-A----TTGT-ATTTAATACC-TCA-TGTA--CCA-TTG--TAAGA-TGGTTTG-AGTGAAtaaatgaattg
gi|14 : tTGACATCA--CTAAACTTT-AAAA--------------ACAA----T----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GGG-T--TAG-----------------------------------------------ATCAAATTCCT-A-GATCT------------ATCT-----GT----A----G----T-----A---TCAAGCCTC-CTCC-TC---CTC--------CT--------------CATTG--AAC--TTA-----TA-TG-------TG--------------------TA-Ttaatgaattaa
gi|15 : --T-ATACT----AACT-TACATGTATATATTC-ATGT-A-------CC-TCA-TGAA--CCA-TCGTATG--ATTGGTTTG-AGTGAA
gi|16 : atatcaaatgtatagacatcggaaatttgtataatatatactaaa--CTTTG--AATGACCTA-TTG---T-----ATA-T----A--T-TGTGTCT-----------GT-A-------CC-TCA-TGTA--CTATTTG-ACA--A-TGGATTG-AGCAAAAtaaatggattga
gi|17 : atcttactgtattatatgtgaaTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGG-TATGGAATG-CCTACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--CAGcgaaaggacttgaa
gi|2 : ttgaTCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATGC-AGTAT-TATTCGTATGGTTGC---GAATTGGGGGAGGG-GAAAAT-CTA-ATGATTCAC--GGAAGTAGTGC-ATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----TGTAAGGTAAACTTTGGCTTTGA-GAAATAT-TTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAGAAAGAAATAAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------TT--TCACTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCTTT--------------A------ATATTTATCAAACTCTT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CTATTG--AAC--ATG-----CA-TA-------TG--------------------TA-TGTAAT-A-T---TAATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----TTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG--TA-AATGAAAT
gi|20 : ---TTCATGT--ATCTTG--TG-------CTAATA--AAC--ATA-----TA-TG-------TG--------------------T-------T-A-T---TCATAT-A-TTT-G-T-ACC--CTTTG---A--A--TA-TTG----T--T-ATA-T----
gi|21 : gct------ATATTTG----ATTCCT-A-GATCT------------ATTT-----GT----AAGTAT----T-----A---A---GCCTC-CTCC-TC---TTCAT
gi|3 : tcGTT-TATACAACAGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAAT-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TT--AAG---CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--CAGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAG-AA----TTAATGACATCA--TCAAATTTT-AAAACA--TTTGAAA--AAAAA----C----T---ATGGGCAT-AT----------------TT--TCATTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCT-CCTTT--------------A------ATATTTATTAAACTCTT-A-GATCC------------AATT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CTATTG--AAC--ATG-----TA-T-----------------------------------TAAT-A-TAC-TAGTA-----TT-G-T-ACC--CTCTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CT-TCA-TATA--CCA-TTG-ATA--A-TGGTTTG--GCGAAAT
gi|4 : TTGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTT---TGCCAATAGAAGTAAGTAGGTAGGCGG-CATGGAATT-CCTACAATTGATAGAAA-CAGCACAC---G-T-GTACTGG-TAAATTAGTTCAGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGATA-----ATATACCAAGCACACTGCAT-TTCAGAG-AA----TTAAC----TTT--TTAAA-----AAAATCTATTT---ACCAGGTA----CATTGT---ATG----T-ATATATATATACATATATAT--TCATTTCT--------AAAG-CCAG-AAG-T--TAGTCTG---CTG-ACT-CCCTT--------------AATTATGATATTCATCAAATTCTC-A-AATCT------------GTTT-----GT----A----aaatgaaatgaaa
gi|5 : T--TCATTTCT--------AAAATCCAG-GAGTT--TTGTCTG---CT--TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AGTG-T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCTAGTGACAAT--ATAATTATTA-TGTTTTTTTTGGCTTTTT-------------TATTATCAT-A-TGTATCACAC-A-TTTGG-T-GCCA-GTTTG--AA--T--AA-TTG---TT--T-ATA-TA---AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCGTTGTA--CAC-TAG-ATA--A-TTGTa
gi|6 : T--TCATTTCT--------AAAATCCAG-GAG-T--TTGTCTG---CTG-TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCTAA-GATCT-------------TTTGGTGAGT----G----T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CTAGTG--AAC--ATA-----TA-TA-------TATGTTTTTTTTGGGCTTTTTTTA-TTTCAT-A-T---GTATACAA-TTT-G-T-GCC--GTTTG--AA--T--AA-TTG---TT--T-ATA-T----AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCA-TGTA--CCA-CTG-ATA--A-TGGTaaatatgaaa
gi|7 : CAAATTT--AAAAT---CTT---A--AAAAAAAACC----TCGCATG----T-AT----------------AT--TCATCTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ACATTTATCAAATTCCT-A-GATCT------------ACTT-----GT----A----TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CTATTG--AAC--ATA-----CA-TA-------TG--------------------TA-TGTATT-A-T---TTATAT-A-CTT-C-T-AC----------------------G---TC--T-ATC-TGGGGAA-T-TATATT-----A----ATGT-A-------CC-TCA-GGTA--CCA-TTG-ATA--A-TGGTTTG-AGTGAAaaaattgaa
gi|8 : --TAGCCTG---CTG-GCC-CTCTT--------------G------ATATTTATCAAATTCCT-A-GATCTATTTGTAGATCTATTT-----GT----A----TGTATT-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CTTTTG--AAC--ATA-----TAATG-------CG--------------------TA-TATATT-A-T---TTATAT-A-CTT-G-T-ACC--CGTTG--AA--C--TA-TTG---TT--T-ATA-T----AA-T-TATATTT---------CTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCAAAtaaatgaattg
gi|9 : TATCAACTCTACGAAAAGAATT-TTTGACTTCT-A--------------CCAAACACACTGAAA-TTCAGAGAA-----TTAATGACATCA--TCGAA-------------------------------C----T---GTG----A-AT----------------AT--TCATTTCT--------AAACTCCAG-GAG-T--TGATCTG---CTG-TCC-CCCTT--------------T------GTATTTATCAAATTCCC-A-AATCT------------ATTT-----GTATACA----T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CTAATC--AAC--ATA-----TA-TG-------Ttaaatgaattgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT
Alignments
lowQualScore : 1 1 11 1 1 11 1 1 1 11 1 1 1 222 22222 11 1 1 1 1 11 1 11 11 11 1 1 222 11 11 1 1 1 1 1 22222 1 444444444444444 222 2222 11 2222 2222 11 11 1 1 22222 1 2222 1 22222 11 222 1 222 1 1 11 222 1 11 1 2222 1 22222222 1 1 1 44444444444 1 11 1 1 1 1 1 222 1 1 1 1 11 1 1 222 11 22222 11 22222 1 11 222 2222 3333333 1 11 1 11 1 1 1 1 222222 444444444444 1 2222 1 2222 1 11 1 1 1 222 1 11 11 222 1 11 11 1 222 1 1 1111 11 333333 1 1 22 222 11 1 1 111 1111 1111 11 1 11 11111 2222222 11111 4444444444444444444444444444444444444444444444444444444444 11111111 666666666666666666666 2222222222222 222222222222222 2222222 11111 11111111 33333333333333333333 111 1111 33333333333 1111111
lowQualScore : 5 1 5 66 5 5 22 88 5 5 1 5 88 5 5 1 1 5 000 77777 88 5 1 1 5 5 5 1 22 88 1 5 88 1 88 77 333 5 1 5 000 1 88 88 5 1 5 5 1 5 5 1 1 77777 5 111111111111111 000 3333 88 4444 1 1 3333 88 88 5 1 5 77777 5 3333 1 5 66666 88 1 111 1 5 111 5 5 77 111 5 88 5 3333 22 5 2 11111111 5 5 1 5 1 55555555555 5 88 1 1 1 5 5 1 1 5 1 5 5 1 000 1 1 1 5 5 5 5 88 5 5 111 1 1 1 88 2 77777 88 2 11111 5 88 111 4444 1 1111111 5 2 88 5 88 5 5 5 22 22 5 999999 777777777777 1 5 4444 5 4444 5 88 5 1 22 2 5 5 111 1 5 1 88 77 2 111 1 5 77 77 5 111 1 3 3 5555 88 6 222222 3 3 00 333 88 3 3 0 8 8 444 4444 7777 8 8 1 11 8 8 0 8 0 8 99 3 0 33 66 8 8 22222 8 4444444 1 99 33333 4444444444444444444444444444444444444444444444444444444444 55 44444444 4 4 88 666 3 3 888888888888888888888 3 3 1111111111111 88888 6666 333333333333333 555 555 3 3 555 77 33 3333333 1 66 33 11111 2 22222222 88888888888888888888 3 22 3 3 111 4 3 3 3 3 3 77 44 88888 3 555 44 3 3 3333 6 3 55555555555 3 0000000 3 3 44 3 3 44 3 4
lowQualScore : . . . .. . . .. .. . . . . .. . . . . . ... ..... .. . . . . . . . .. .. . . .. . .. .. ... . . . ... . .. .. . . . . . . . . . ..... . ............... ... .... .. .... . . .... .. .. . . . ..... . .... . . ..... .. . ... . . ... . . .. ... . .. . .... .. . . ........ . . . . . ........... . .. . . . . . . . . . . . . ... . . . . . . . .. . . ... . . . .. . ..... .. . ..... . .. ... .... . ....... . . .. . .. . . . .. .. . ...... ............ . . .... . .... . .. . . .. . . . ... . . . .. .. . ... . . .. .. . ... . . . .... .. . ...... . . .. ... .. . . . . . ... .... .... . . . .. . . . . . . .. . . .. .. . . ..... . ....... . .. ..... .......................................................... .. ........ . . .. ... . . ..................... . . ............. ..... .... ............... ... ... . . ... .. .. ....... . .. .. ..... . ........ .................... . .. . . ... . . . . . . .. .. ..... . ... .. . . .... . . ........... . ....... . . .. . . .. . .
lowQualScore : 5 0 0 00 0 5 00 00 0 5 0 5 00 5 0 0 0 5 555 00000 55 0 0 0 0 0 5 0 00 00 0 0 00 0 00 55 000 0 0 5 555 0 00 55 5 0 5 0 0 5 0 0 0 00000 0 555555555555555 555 5555 55 0000 0 0 5555 00 00 0 0 5 00000 0 5555 0 0 00000 55 0 000 0 5 555 0 5 55 555 0 00 0 0000 00 5 5 55555555 5 0 0 0 0 00000000000 5 55 0 0 0 0 5 0 0 5 0 0 0 0 000 0 0 0 0 5 0 0 55 5 0 000 0 0 0 00 5 00000 00 5 55555 0 00 000 0000 0 5555555 5 5 55 5 00 5 0 0 00 00 0 000000 000000000000 0 5 5555 5 0000 0 00 0 0 00 5 5 0 000 0 0 0 00 55 5 555 0 0 55 55 0 000 0 3 3 0000 33 7 777777 3 3 77 777 33 3 2 0 0 0 000 8888 0000 0 0 4 88 6 0 8 0 8 0 00 2 0 88 66 0 0 44444 0 6666666 0 22 44444 6666666666666666666666666666666666666666666666666666666666 55 55555555 0 0 66 444 6 6 555555555555555555555 3 3 6666666666666 33333 5555 999999999999999 444 444 1 1 000 33 99 6666666 7 88 99 11111 9 66666666 11111111111111111111 3 55 6 6 444 5 6 6 6 6 6 99 66 55555 3 888 22 1 1 8888 7 3 77777777777 3 8888888 3 3 66 3 3 66 3 0
consensus : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
Reference ( family-2426 ) : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGT--TCTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACA-TTTAGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAG-AAAAATAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTA-TTGATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAAT--GATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGTGG-CC-AAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATTT----T-TTAAGTAAACTTTGGCTTTGGCGAAATATGTTT-AAGGGACAGGTTCTTTCAAAAAAAT-TT--GGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAGC-CAGACG-ATACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGAT-TTGTCATGTA-CAAACACACTGAAATTTCAGAGAAT----TGAATGAGACTAATTCCAATTTTAAAAAC---TTTA--A--AAAAA----C----T---ATG----TCAT----------------ATTCTCATTTCT---------AAATCCAACGAG-TC-TAGTCGGGCTCCGATCCGCCATT--------------AC-----ATATTTA-CAAgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|1 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttat---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CTATTG--TTC--ATG-----TA-TA-------TGC-------------------TA-TGTAAT-A-T---T-ATAT-A-CTT-GCT-ACC--CCTTG--AA--A--TAATTGCGTTTAAT-ATA-TTA--AA-TATATATTTATA-A----ATG--A-------CCGTCA-TGTACCCCA-TT--ATA--A-TGGTTTGTAGTGAAtctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|10 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggcAAACTCTC-ATGATCT------------ATTT------T----A----T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CTATTG--TGCTCATAAG---TA-TAC------TG--------------------TA-TGTTAT-AAT---TAATAT-A-CTT-G-TTACCACTTTTGGAAA--A--TA-TTG---TT--T-AAA-T----A--T-TATATTTATA-AG---ATGTGA-------CC-TCA-TGTA--C-A-TTG-ATA--A-TGGTTTG-AGtgaccaatacatcctacaaaaaatgaa
gi|11 : gtaatT----------------AT--TCATTTCTTTTACACTAAATTCAAG-GAG-TGTTTGTCTG---CTG-TCT-CTCTTAATGATATTTTTTAA------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AAG--T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CTAGTGA-AAT--ATA-----TA-TA-------TG--------------------Tgtgaataaataaagtgaaa
gi|12 : ----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTATT-A-T---TGAAAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-CTG---TT--T-ATA-T----AA-T-TATATTCA-A--------GT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAttttt
gi|13 : TTG--TG-------CTAATG--AA---ACA-----TA-TG-------TG--------------------CA-GGTTATTA-T---TTATGT-AACTT-A-T-ATC--CTTGG--CA--A--TA-TTG---TT--TTATA-T----AAAT-CATATTAA-A-A----TTGT-ATTTAATACC-TCA-TGTA--CCA-TTG--TAAGA-TGGTTTG-AGTGAAtaaatgaattg
gi|14 : tTGACATCA--CTAAACTTT-AAAA--------------ACAA----T----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GGG-T--TAG-----------------------------------------------ATCAAATTCCT-A-GATCT------------ATCT-----GT----A----G----T-----A---TCAAGCCTC-CTCC-TC---CTC--------CT--------------CATTG--AAC--TTA-----TA-TG-------TG--------------------TA-Ttaatgaattaa
gi|15 : --T-ATACT----AACT-TACATGTATATATTC-ATGT-A-------CC-TCA-TGAA--CCA-TCGTATG--ATTGGTTTG-AGTGAA
gi|16 : atatcaaatgtatagacatcggaaatttgtataatatatactaaa--CTTTG--AATGACCTA-TTG---T-----ATA-T----A--T-TGTGTCT-----------GT-A-------CC-TCA-TGTA--CTATTTG-ACA--A-TGGATTG-AGCAAAAtaaatggattga
gi|17 : atcttactgtattatatgtgaaTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGG-TATGGAATG-CCTACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--CAGcgaaaggacttgaa
gi|2 : ttgaTCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATGC-AGTAT-TATTCGTATGGTTGC---GAATTGGGGGAGGG-GAAAAT-CTA-ATGATTCAC--GGAAGTAGTGC-ATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----TGTAAGGTAAACTTTGGCTTTGA-GAAATAT-TTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAGAAAGAAATAAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------TT--TCACTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCTTT--------------A------ATATTTATCAAACTCTT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CTATTG--AAC--ATG-----CA-TA-------TG--------------------TA-TGTAAT-A-T---TAATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----TTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG--TA-AATGAAAT
gi|20 : ---TTCATGT--ATCTTG--TG-------CTAATA--AAC--ATA-----TA-TG-------TG--------------------T-------T-A-T---TCATAT-A-TTT-G-T-ACC--CTTTG---A--A--TA-TTG----T--T-ATA-T----
gi|21 : gct------ATATTTG----ATTCCT-A-GATCT------------ATTT-----GT----AAGTAT----T-----A---A---GCCTC-CTCC-TC---TTCAT
gi|3 : tcGTT-TATACAACAGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAAT-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TT--AAG---CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--CAGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTTAGAG-AA----TTAATGACATCA--TCAAATTTT-AAAACA--TTTGAAA--AAAAA----C----T---ATGGGCAT-AT----------------TT--TCATTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCT-CCTTT--------------A------ATATTTATTAAACTCTT-A-GATCC------------AATT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CTATTG--AAC--ATG-----TA-T-----------------------------------TAAT-A-TAC-TAGTA-----TT-G-T-ACC--CTCTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CT-TCA-TATA--CCA-TTG-ATA--A-TGGTTTG--GCGAAAT
gi|4 : TTGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTT---TGCCAATAGAAGTAAGTAGGTAGGCGG-CATGGAATT-CCTACAATTGATAGAAA-CAGCACAC---G-T-GTACTGG-TAAATTAGTTCAGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGATA-----ATATACCAAGCACACTGCAT-TTCAGAG-AA----TTAAC----TTT--TTAAA-----AAAATCTATTT---ACCAGGTA----CATTGT---ATG----T-ATATATATATACATATATAT--TCATTTCT--------AAAG-CCAG-AAG-T--TAGTCTG---CTG-ACT-CCCTT--------------AATTATGATATTCATCAAATTCTC-A-AATCT------------GTTT-----GT----A----aaatgaaatgaaa
gi|5 : T--TCATTTCT--------AAAATCCAG-GAGTT--TTGTCTG---CT--TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AGTG-T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCTAGTGACAAT--ATAATTATTA-TGTTTTTTTTGGCTTTTT-------------TATTATCAT-A-TGTATCACAC-A-TTTGG-T-GCCA-GTTTG--AA--T--AA-TTG---TT--T-ATA-TA---AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCGTTGTA--CAC-TAG-ATA--A-TTGTa
gi|6 : T--TCATTTCT--------AAAATCCAG-GAG-T--TTGTCTG---CTG-TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCTAA-GATCT-------------TTTGGTGAGT----G----T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CTAGTG--AAC--ATA-----TA-TA-------TATGTTTTTTTTGGGCTTTTTTTA-TTTCAT-A-T---GTATACAA-TTT-G-T-GCC--GTTTG--AA--T--AA-TTG---TT--T-ATA-T----AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCA-TGTA--CCA-CTG-ATA--A-TGGTaaatatgaaa
gi|7 : CAAATTT--AAAAT---CTT---A--AAAAAAAACC----TCGCATG----T-AT----------------AT--TCATCTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ACATTTATCAAATTCCT-A-GATCT------------ACTT-----GT----A----TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CTATTG--AAC--ATA-----CA-TA-------TG--------------------TA-TGTATT-A-T---TTATAT-A-CTT-C-T-AC----------------------G---TC--T-ATC-TGGGGAA-T-TATATT-----A----ATGT-A-------CC-TCA-GGTA--CCA-TTG-ATA--A-TGGTTTG-AGTGAAaaaattgaa
gi|8 : --TAGCCTG---CTG-GCC-CTCTT--------------G------ATATTTATCAAATTCCT-A-GATCTATTTGTAGATCTATTT-----GT----A----TGTATT-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CTTTTG--AAC--ATA-----TAATG-------CG--------------------TA-TATATT-A-T---TTATAT-A-CTT-G-T-ACC--CGTTG--AA--C--TA-TTG---TT--T-ATA-T----AA-T-TATATTT---------CTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCAAAtaaatgaattg
gi|9 : TATCAACTCTACGAAAAGAATT-TTTGACTTCT-A--------------CCAAACACACTGAAA-TTCAGAGAA-----TTAATGACATCA--TCGAA-------------------------------C----T---GTG----A-AT----------------AT--TCATTTCT--------AAACTCCAG-GAG-T--TGATCTG---CTG-TCC-CCCTT--------------T------GTATTTATCAAATTCCC-A-AATCT------------ATTT-----GTATACA----T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CTAATC--AAC--ATA-----TA-TG-------Ttaaatgaattgaa
blockSeqs : . A . T . . CG TG . A G . AG T . A C A GTG TAAGA . . A A . . . T GA . G . . T . . GGA . C . GGT G . . A T . . T . G T A TTATG . CT . CTAG . TA C A GAAC AG . . G . AATGG . . C . GGATG AT G GAA G T . . . . . G TG . . TA A C GCCAA T . A . A GAAAAAAAAAA A TT C T G . . T A T C . . G . G G G . . . G . T . TTG C G T TG A TTAGT AG G GGAGT G GT TAG CATT A . A G . . TG . . . CA TG G . . A . AATA A TAAG . . . A GG T . . . A . G . . G . C . GG GG . . T . C TGCG . C AAAAT . . TT AG . A T T . . . T AAGT . . T AA T . . . TT A . . TA . . ATTGT . AAAGAAA A . CTTT TCTATTTACCAGGTACATTGTATGTATATATATATACATATAT . TTTACACT . T GT . . . AATGATATTTTTTAA A . ATTTGTAGATCTA GGTGA ATAC AGTTGTTAG GAT CAA T A ATG AC . TAGTCTT T AC TC ATTAT A GTTTTTTT TGTTTTTTTTGGGCTTTTTT T TA T A GTA A A A G . T AC GA TGACC . . . T C GGGG A . TATATATTCA G TTTAATA . T . T T AG T .
blockSeqs : . . GC . C TG . . . . . . T . . . . T . . . A AA C . . . . A . . TA . . ATTGT . AA T . TTTT CATTTGAAAAAAAACTATGGGCATAT . . . . . . . . ATGATATTTTTAA . . A . . AGTATT . . . . . C . TGTTT G A . AG . AC GCTTTTT . AT . . AC G . . . . . A . A . . . . . A C . AATGAATCCA . . . . . . . . . .
blockSeqs : T . . . . T . . . A AT T . . . . A . . AA . . A . AA T . TTTT TCTTAAAAAAAAACCTCGCATGTAT . . . . . . . . ATGATATTTTTAA . . A . . TGTATC . . . . . . . TAGTT T . . . . A . . TA . . . T . . . . . . . A . . . . . . . . AATGAATCCA . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . AA T . TTT CTTTAAAAAACTATGTAT . . . . . . . . AATTATG . . A . . TGTATT . . . . . . . . A . . . . G . . AA . . . A . . . . . . . A . . . . . . . . TATAAGA . . . . . . . . . .
blockSeqs : . . ACAATTATGTAT . . . . . . . . A . . A . . GTGTT . . . . . . . . T . . . . G . . AA . . . C . . . . . . . A . . . . . . . . TATAAT . . . . . . . . . .
blockSeqs : . CTGTGAAT . . . . . . . . A . . G . . TT . . . . . . . . T . . . . G . . CA . . . A . . . . . . . A . . . . . . . . TATAAA . . . . . . . . . .
blockSeqs : . . . . . . . . A . . A . . GT . . . . . . . . A . . . . A . . CA . . . C . . . . . . . A . . . . . . . . AAAAT . . . . . . . . . .
blockSeqs : . . . . . . . . G . . A . . TT . . . . . . . . T . . . . G . . AT . . . T . . . . . . . T . . . . . . . . CAA . . . . . . . . . .
blockSeqs : . . . . . . . . T . . . . . TT . . . . . . . . G . . . . A . . AT . . . T . . . . . . . T . . . . . . . . AA . . . . . . . . . .
blockSeqs : . . . . . . . . . . TT . . . . . . . . G . . . . A . . . . . . T . . . . . . . C . . . . . . . . TC . . . . . . . . .
blockSeqs : . . . . . TT . . . . . . . . T . . . . G . . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . G . . . . .
blockSeqs : . . . A . . . . .
blockSeqCons : *** T*** ** TA A**** AA***** ** TTTT* ** ** *** A******************** ** ******************** *** ** **** TATAAA***** **
originalCons : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATATTGTCATGTACCAAACACACTGAAA-TTCAGAGAAA----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
finalCons : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGATA----CATGTACCAAACACACTGAAA-TTCAGAGAA-----TTAATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTTA--------------------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATAAA-----TGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT
Alignments
lowQualScore : 1 1 11 1 1 11 1 1 1 11 1 1 1 222 22222 11 1 1 1 1 11 1 11 11 11 1 1 222 11 11 1 1 1 1 1 22222 1 444444444444444 222 2222 11 2222 2222 11 11 1 1 22222 1 2222 1 22222 11 222 1 222 1 1 11 222 1 11 1 2222 1 22222222 1 1 1 44444444444 1 11 1 1 1 1 1 222 1 1 1 1 11 1 1 222 11 22222 11 22222 1 11 222 2222 3333333 1 11 1 11 1 1 1 1 222222 444444444444 1 2222 1 2222 1 11 1 1 1 222 1 11 11 222 1 11 11 1 222 1 1 1111 11 333333 1 1 22 222 11 1 1 111 1111 1111 11 1 11 555555555 22222 11111 4444444444444444444444444444444444444444444444444444444444 11111111 666666666666666666666 2222222222222 222222222222222 2222222 11111 11111111 33333333333333333333 111 1111 33333333333 1111111
lowQualScore : 5 1 5 66 5 5 22 88 5 5 1 5 88 5 5 1 1 5 000 77777 88 5 1 1 5 5 5 1 22 88 1 5 88 1 88 77 333 5 1 5 000 1 88 88 5 1 5 5 1 5 5 1 1 77777 5 111111111111111 000 3333 88 4444 1 1 3333 88 88 5 1 5 77777 5 3333 1 5 66666 88 1 111 1 5 111 5 5 77 111 5 88 5 3333 22 5 2 11111111 5 5 1 5 1 55555555555 5 88 1 1 1 5 5 1 1 5 1 5 5 1 000 1 1 1 5 5 5 5 88 5 5 111 1 1 1 88 2 77777 88 2 11111 5 88 111 4444 1 1111111 5 2 88 5 88 5 5 5 22 22 5 999999 777777777777 1 5 4444 5 4444 5 88 5 1 22 2 5 5 111 1 5 1 88 77 2 111 1 5 77 77 5 111 1 3 3 5555 88 6 222222 3 3 00 333 88 3 3 0 8 8 444 4444 7777 8 8 1 11 8 8 0 8 0 8 99 3 0 33 66 8 8 444444444 8 00000 8 99 33333 4444444444444444444444444444444444444444444444444444444444 55 44444444 4 4 88 666 3 3 888888888888888888888 3 3 1111111111111 88888 6666 333333333333333 555 555 3 3 555 77 33 3333333 1 66 33 11111 2 22222222 88888888888888888888 3 22 3 3 111 4 3 3 3 3 3 77 44 88888 3 555 44 3 3 3333 6 3 55555555555 3 0000000 3 3 44 3 3 44 3 4
lowQualScore : . . . .. . . .. .. . . . . .. . . . . . ... ..... .. . . . . . . . .. .. . . .. . .. .. ... . . . ... . .. .. . . . . . . . . . ..... . ............... ... .... .. .... . . .... .. .. . . . ..... . .... . . ..... .. . ... . . ... . . .. ... . .. . .... .. . . ........ . . . . . ........... . .. . . . . . . . . . . . . ... . . . . . . . .. . . ... . . . .. . ..... .. . ..... . .. ... .... . ....... . . .. . .. . . . .. .. . ...... ............ . . .... . .... . .. . . .. . . . ... . . . .. .. . ... . . .. .. . ... . . . .... .. . ...... . . .. ... .. . . . . . ... .... .... . . . .. . . . . . . .. . . .. .. . . ......... . ..... . .. ..... .......................................................... .. ........ . . .. ... . . ..................... . . ............. ..... .... ............... ... ... . . ... .. .. ....... . .. .. ..... . ........ .................... . .. . . ... . . . . . . .. .. ..... . ... .. . . .... . . ........... . ....... . . .. . . .. . .
lowQualScore : 5 0 0 00 0 5 00 00 0 5 0 5 00 5 0 0 0 5 555 00000 55 0 0 0 0 0 5 0 00 00 0 0 00 0 00 55 000 0 0 5 555 0 00 55 5 0 5 0 0 5 0 0 0 00000 0 555555555555555 555 5555 55 0000 0 0 5555 00 00 0 0 5 00000 0 5555 0 0 00000 55 0 000 0 5 555 0 5 55 555 0 00 0 0000 00 5 5 55555555 5 0 0 0 0 00000000000 5 55 0 0 0 0 5 0 0 5 0 0 0 0 000 0 0 0 0 5 0 0 55 5 0 000 0 0 0 00 5 00000 00 5 55555 0 00 000 0000 0 5555555 5 5 55 5 00 5 0 0 00 00 0 000000 000000000000 0 5 5555 5 0000 0 00 0 0 00 5 5 0 000 0 0 0 00 55 5 555 0 0 55 55 0 000 0 3 3 0000 33 7 777777 3 3 77 777 33 3 2 0 0 0 000 8888 0000 0 0 4 88 6 0 8 0 8 0 00 2 0 88 66 0 0 000000000 0 00000 0 22 44444 6666666666666666666666666666666666666666666666666666666666 55 55555555 0 0 66 444 6 6 555555555555555555555 3 3 6666666666666 33333 5555 999999999999999 444 444 1 1 000 33 99 6666666 7 88 99 11111 9 66666666 11111111111111111111 3 55 6 6 444 5 6 6 6 6 6 99 66 55555 3 888 22 1 1 8888 7 3 77777777777 3 8888888 3 3 66 3 3 66 3 0
consensus : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGAT---ATTGTCATGTACCAAACACACTGAAA-TTCAGAGAA-----TT-AATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
Reference ( family-2426 ) : TCTGATTATTTNTGTTCGTAATNGATCTTGGGTAGTCNNCAAGGGGTGAACAGTATTNATCCCCTTATTAGTATTTTCTATTCTATGNTNAATAGATGTGTGGTAAGAAAGATTTTTAGGAGCGGAAANGAATNATTGTTGGATTACAGCAACATANCANNTTTCACTAGCTNGACAGATGAGTCTTAGTTTTNGAGTAGCCTGAAGNNNAGCTCTTNTGATTAGGTCTNCGGTGGTCTGATTTATACAGGTTNATTATTGGCGCGNAAACTGCAGAGTGANTCTTNAAAATTATGAAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCACTAGGGAAATTGAGTTGTACCTANATGTCGANGAGAGAACAACAAAGATAAGTGTAATGGTGCTTNTCAGAAAGGCAATGGCCAACGCTAGAAAAGCTAATGCTNTGTATTATGGATGTGATAAATTAANGTGAATGNTTGAAAGTGTGTGAATAATTTAAGATAAATTTAGCGGCATTTACAGTGGCTGTTGTCTGTAGGCGAAAGTGGNNCCCGTATTTATCGAAGGGCCAAAAAACATTTTAGTCGAACAAGCCCNGAAAGGCAATGGTTGCNGCATTAGGAAAAAAAAAATTAGAAAAAATAATTGNCANTCAGTNTACCATTAGAAACAGGCAATTTNATTNATTTGATNAAGTGGTAATGCCAGTATCTACTCNCATGGTTGCCCGGAATTNGGNGAGNGCGAAAATTCTAGATGATTCACATGGAAGTAGTGCCATTTATTGAANTTNCTGAANATATTTTGATGTATGATCGATTAGTAAGTGAGGTTACGCCGAGTTCGTATAGTGGTGTCTATGTAGGTGAACATTTNAGGTCGTTCCTCTGTACTGCGATTGATATACACCATGGGATGATTACCAGTAGCTGGNNAAAAATGNNTTCAGAGTCCAACGCAAGAAAAACTGTGTTTACTGNAATGATAGAAATATTTATATTTAGTAAGGTCGATACACGTGACATGATAATGAAAGTGTGGANCCTNNGCGGATGTTTTTATAGCGGAAATATCTTTTNAATACCTGTNGCTTTTGTCCAATATTTGGGGTAGGACCCAATGCCCGGTAATTTTTTANTGTCGAAATGGGATTTGGCGAGCTGTAATCAAANAGAGATTAAAGGACCAGTT-TATACAA-AGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----T-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TTT-AAGGG-CA--CTCTTTCAAAAAAAT-TTTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TAATACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGAT---A----CATGTACCAAACACACTGAAA-TTCAGAGAA-----TT-AATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ATATTTATCAAATTCCT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ATCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTAAT-A-T---TNATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAAT
gi|1 : TTTGATTATTTCTATTCGTAATGGATCTTGAGTAGTCGCCAAGGGG--AACAGT-TTTATCCCCTTATT--TATTTTC-ATTCTATATTAAAT-GAT---TGG-----AAGATTTTTAGGAGCAGAAACGAATCATTGTTGGATTACAGCAACATAGCACTTTTCACTAGCTTGACAGATGAGTCTTAGTTTTGGAGTAGCCTAAAGCCTAGCTCTTGTGATTA---CTTTGATGGTCTGATTTATAC-GGTTAATTATTGGCGCGAAAACTGCAGA-TGAATCTTCAAAA-----AAGCATTGAGATGAGTTCCAGGCTGTACGCCTGTCTCA----GGAAATTGAGTTG-ACCTAAATATTGATGAGA----AACAAAAATA--TGTAATGGTGCTTCTCAAAAAGGC--T--CCAACGCTAAAAAAGCTAATGTTATGTATTAT-----TGATAA--TAATGT---TGTTTGAAAG-GTGTGAATAATTTAAGATAAATTTAGCGGCATTTACA-TAGCTGT--TCTGTAGGCGAAAGTGGATCCCGT-TTTATCGAAGGGC---AAAACA-TTTAGTCGAACAAGCCCTGAAAGGCAATGGTTATTGCATTAG-----------TTAG-AAAAATAA--GACAATCAATTTACCATTAGAAACAAGCAATTTAATTTA-TTGATAAAGTGGTAATGCCAGTATCTACTCTCATGGTTGCCCGAAATTTGGCGAGTACGAAAATTCTAGAT-ATTCATATGAAAG-AGTACCATTTA---AAATTCCTAAAAATAT
gi|1 : aTATTTTGATGTA--ATCGA-----AAGTA--GTTACACCA---TCGTATA-TGGT--CTATG---GTGAA----TCAGGTCGTTCCTCTGT-CTGTTATTAATATATACCATGGGA--ATTACCAGTAGCTGGGCAAAAATGATTTCA-AGTCCAACGCAAAAAAAACTGTGTTTACTGTAATGATAGA----TTT-TATTTAA----GTCGATATACATGACATGATAATGAAAGTGTGAACCCTTCGCGGATGTTTTTATAGCGGAAATATCTTTTTAATACCTGTTGCTTTTGTCCAATATTTGGGATAGGACCCAATGCTCTGTAATTTTTTAATGTCGAAAT--GATTT--CGAGCTGTAATCAAAGAAAGATTAAAGGACCAGTTGTATACAA-AGTGG-CC-AAACGATGTGTGAATAATTCGT--AAAGGTCAAATCTATAAATTT----T-TTAAGTAAACTTTGGCTTTGGCGAAATATGTTT-AAGGGACAGGTTCTTTCAAAAAAAT-TT--GGAAACCTTA-TTTAATATTCAGAAGCAACAAAAACCCATCGTTTCCTGCCCATAT----AAGTAGGTAGGTGGTTATGGGGTTCCCAACAAATGA-AGAAGTCTGCACACTCTGCTAATACTGGCTAAATTAGC-CAGACG-ATACACACTTCATTTTAGAAACTGTAAATCATTATCAACTCTACGT-AATAATAGTTTGGTTTCTAAGATTTGT----CATGTA-CAAACACACTGAAATTTCAGAGAA-----TTGAATGAGACTAATTCCAATTTTAAAAAC---TTTA--A--AAAAA----C----T---ATG----TCAT----------------ATTCTCATTTCT---------AAATCCAACGAG-TC-TAGTCGGGCTCCGATCCGCCATT--------------AC-----ATATTTA-CAAgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|1 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttat---T---GCGCT-CTCT-TC---TTCATGT--ATTTTGGTCG-------CTATTG--TTC--ATG-----TA-TA-------TGC-------------------TA-TGTAAT-A-T---T-ATAT-A-CTT-GCT-ACC--CCTTG--AA--A--TAATTGCGTTTAAT-ATA-TTA--AA-TATATATTTATA-A----ATG--A-------CCGTCA-TGTACCCCA-TT--ATA--A-TGGTTTGTAGTGAAtctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggctgcgctctcttcttcatgtattttggtcgctattgttcatgtatatgctatgtaatattatatacttgctaccccttgaaataattgcgtttaatatattaaatatatatttataaatgaccgtcatgtaccccattataatggtttgtagtgaatgaccaatacatcctacaaaaaatgaa
gi|10 : atttgattatttctattcgtaatggatcttgagtagtcgccaaggggaacagttttatccccttatttattttcattctatattaaatgattggaagatttttaggagcagaaacgaatcattgttggattacagcaacatagcacttttcactagcttgacagatgagtcttagttttggagtagcctaaagcctagctcttgtgattactttgatggtctgatttatacggttaattattggcgcgaaaactgcagatgaatcttcaaaaaagcattgagatgagttccaggctgtacgcctgtctcaggaaattgagttgacctaaatattgatgagaaacaaaaatatgtaatggtgcttctcaaaaaggctccaacgctaaaaaagctaatgttatgtattattgataataatgttgtttgaaaggtgtgaataatttaagataaatttagcggcatttacatagctgttctgtaggcgaaagtggatcccgttttatcgaagggcaaaacatttagtcgaacaagccctgaaaggcaatggttattgcattagttagaaaaataagacaatcaatttaccattagaaacaagcaatttaatttattgataaagtggtaatgccagtatctactctcatggttgcccgaaatttggcgagtacgaaaattctagatattcatatgaaagagtaccatttaaaattcctaaaaatatgattcgttttgacaacaatgctttaaccttcggcctttttgttattattttgatgtaatcgaaagtagttacaccatcgtatatggtctatggtgaatcaggtcgttcctctgtctgttattaatatataccatgggaattaccagtagctgggcaaaaatgatttcaagtccaacgcaaaaaaaactgtgtttactgtaatgatagattttatttaagtcgatatacatgacatgataatgaaagtgtgaacccttcgcggatgtttttatagcggaaatatctttttaatacctgttgcttttgtccaatatttgggataggacccaatgctctgtaattttttaatgtcgaaatgatttcgagctgtaatcaaagaaagattaaaggaccagttgtatacaaagtggccaaacgatgtgtgaataattcgtaaaggtcaaatctataaattttttaagtaaactttggctttggcgaaatatgtttaagggacaggttctttcaaaaaaatttggaaaccttatttaatattcagaagcaacaaaaacccatcgtttcctgcccatataagtaggtaggtggttatggggttcccaacaaatgaagaagtctgcacactctgctaatactggctaaattagccagacgatacacacttcattttagaaactgtaaatcattatcaactctacgtaataatagtttggtttctaagatttgtcatgtacaaacacactgaaatttcagagaattgaatgagactaattccaattttaaaaactttaaaaaaactatgtcatattctcatttctaaatccaacgagtctagtcgggctccgatccgccattacatatttacaatctagttaaaaccttttccccccctccccccccgccccggagcccccctccctgctattttggttattgcggcAAACTCTC-ATGATCT------------ATTT------T----A----T----T-----A---T----CCTC-CTCC-TC---TTCAT-T--ATTTTG--TG-------CTATTG--TGCTCATAAG---TA-TAC------TG--------------------TA-TGTTAT-AAT---TAATAT-A-CTT-G-TTACCACTTTTGGAAA--A--TA-TTG---TT--T-AAA-T----A--T-TATATTTATA-AG---ATGTGA-------CC-TCA-TGTA--C-A-TTG-ATA--A-TGGTTTG-AGtgaccaatacatcctacaaaaaatgaa
gi|11 : gtaatT----------------AT--TCATTTCTTTTACACTAAATTCAAG-GAG-TGTTTGTCTG---CTG-TCT-CTCTTAATGATATTTTTTAA------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AAG--T----TGTTAGA---T---TCCTCTCTCA-TA---TGCATGTACATCTTG--TGTGTTT--CTAGTGA-AAT--ATA-----TA-TA-------TG--------------------Tgtgaataaataaagtgaaa
gi|12 : ----A----T----T-----A---T---GCCTC-CTCC-TC---TTCATGT--ACCTTG--TG-------CTATTG--AAC--ATA-----TA-TG-------TG--------------------TA-TGTATT-A-T---TGAAAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-CTG---TT--T-ATA-T----AA-T-TATATTCA-A--------GT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCGAAttttt
gi|13 : TTG--TG-------CTAATG--AA---ACA-----TA-TG-------TG--------------------CA-GGTTATTA-T---TTATGT-AACTT-A-T-ATC--CTTGG--CA--A--TA-TTG---TT--TTATA-T----AAAT-CATATTAA-A-A----TTGT-ATTTAATACC-TCA-TGTA--CCA-TTG--TAAGA-TGGTTTG-AGTGAAtaaatgaattg
gi|14 : tTGACATCA--CTAAACTTT-AAAA--------------ACAA----T----T---ATG----T-AT----------------AT--TCATTTCT--------AAAATCCAG-GGG-T--TAG-----------------------------------------------ATCAAATTCCT-A-GATCT------------ATCT-----GT----A----G----T-----A---TCAAGCCTC-CTCC-TC---CTC--------CT--------------CATTG--AAC--TTA-----TA-TG-------TG--------------------TA-Ttaatgaattaa
gi|15 : --T-ATACT----AACT-TACATGTATATATTC-ATGT-A-------CC-TCA-TGAA--CCA-TCGTATG--ATTGGTTTG-AGTGAA
gi|16 : atatcaaatgtatagacatcggaaatttgtataatatatactaaa--CTTTG--AATGACCTA-TTG---T-----ATA-T----A--T-TGTGTCT-----------GT-A-------CC-TCA-TGTA--CTATTTG-ACA--A-TGGATTG-AGCAAAAtaaatggattga
gi|17 : atcttactgtattatatgtgaaTAA-ATTCAGAG-CAACAAA---CCATTGT-------CCATAG----AAGTAGGTAGGTGG-TATGGAATG-CCTACA-------GAAA-TTGCACACTCTG-TAATACTGG-CAAATTAG--CAGcgaaaggacttgaa
gi|2 : ttgaTCTGAT-ATTTATGTT-GTAATT-AT-TTGGG-AGTCCGCAAGGAGTGAA-AGTATTGATCCCCTT-TTAGTATTTTCTATT-TATGATCAATAGATGTGTGGTAAGAAAAATTTT--GGAG-GGAAAAGAATAATTGTTG-ATTACAG-AAC-TATCAGATTTC--TAATTGGA-AGATGAGT--TAATTTTTG--TA--CTGAAAGGAAGCT-TTCTG-TTAGGTCTGCGGTG--CTGAT--ATACAGGTTTATTAT-GGCG-GTAAAC-GCAGAGTGATTCTTAAAAATTATGAAGCATT-AGAT----------CT---CGT---TCTCACTAGGGAAA--GAATTGTA--TACATGTCGAAAAGAGAACAATAAAGATAAGTGTAA--GTG-TTGTCAGAA-GGCAATGGTCAA-GCTAGAA----TAATACTCT-TATTATGGATGTGATAAATTAAGATGAATAGTTGAAAGTGTATGAAT---TTAA-ATAA-TTTAG--GTAT---CAGTGGTTATTGTCT-TAG----AAGTGGTACTCATATTTATTCA---GCCAAAAAACATTTTAGTCGAA-AAGCCCAGAAAG-CAATAGTTGCAATATTAGGAAAAAAAAAATTAGAAAAAATAATTACCATTCAGTGTAC-ATTAGAA-CAGACAATTTTATTAATTTGATCAAGTGGTAATGC-AGTAT-TATTCGTATGGTTGC---GAATTGGGGGAGGG-GAAAAT-CTA-ATGATTCAC--GGAAGTAGTGC-ATTTATTGAACTTGCTGAATATATTTTGATGTATGATAAATTAGTAAGTGAGGTTAGGCGGAGTTCGTATAGTGGTGTTTATGTAGGTGAACATTTAAGGTC-------TGTACTGCGA--GATATACACCA-GGGATGATT-CCA-TA-CTGGCAAAAAATGTGTTCAGAG------GCAAGAA------------CTAAAA-GATAGAAATATTTATATTTAGTAAGGTCGATACATGTGA-ATAATAAT--AAGT-TGGAACCTGGGTTG-TGTTTTTATAGCG-AAATAT---TTAAATAC-TGTGGTTTTT--CCAATATTTGGAGTAGAAC--AATACCTGGTA---TTTTACTGT-GAAATGGGATTTGGCGA-CTGTAA---AATAGAGATTAAAGGACCAGTT-TATACAG-AATGGTGCGAAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAT----TGTAAGGTAAACTTTGGCTTTGA-GAAATAT-TTTTAAAAG-CA--CTCTTTCAAAAAAATATGTGGAAAACCTTA-GTTAA-ATTCAGAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGATAGAAA-CTGCACACTCTG-TACTACTGG-TAAATTAG--CAGACGAATAC-CACTTCATTTTAGAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGCTTCT-AGAT---ATTGTCATGTACCAAACACACTGAAA-TTTAGAGAAAGAAATA-AATGACATCA--TCAAATTTT-AAAAC---TTT---A--AAAAA----C----T---ATG----T-AT----------------TT--TCACTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCTTT--------------A------ATATTTATCAAACTCTT-A-GATCT------------ATTT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---TTCACGT--ATTTTG--TG-------CTATTG--AAC--ATG-----CA-TA-------TG--------------------TA-TGTAAT-A-T---TAATAT-A-CTT-G-T-ACC--CTTTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----TTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGG--TA-AATGAAAT
gi|20 : ---TTCATGT--ATCTTG--TG-------CTAATA--AAC--ATA-----TA-TG-------TG--------------------T-------T-A-T---TCATAT-A-TTT-G-T-ACC--CTTTG---A--A--TA-TTG----T--T-ATA-T----
gi|21 : gct------ATATTTG----ATTCCT-A-GATCT------------ATTT-----GT----AAGTAT----T-----A---A---GCCTC-CTCC-TC---TTCAT
gi|3 : tcGTT-TATACAACAGTGG-GC-AAACGA--TGTGAATAATTCGTCAAAGGGTCAAATCTATAAAAAAAAAAT-TAAGGTAAACTTTGGCTTTGA-GAAATAT-TT--AAG---CA--CTCTTTCAAAATATT-TTTGGAAAACCTTA-GTTAA-ATTCAAAA-CAACAAA---CCATCGTT---TGCCCATAG----AAGTAGGTAGGTGG-TATGGGGTT-CCAACAAATGGCAGAAA-CTGCACATTCTG-TAATACTGG-TAAATTAG--CAGACGAATGC-CACTTCATTTTATAA--TGTAAATCATTATCAACTCTACGTAAAGAATA-TTTGGTTTCT-AGAT---ATTGTCATGTACCAAACACACTGAAA-TTTAGAGAA-----TT-AATGACATCA--TCAAATTTT-AAAACA--TTTGAAA--AAAAA----C----T---ATGGGCAT-AT----------------TT--TCATTTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCT-CCTTT--------------A------ATATTTATTAAACTCTT-A-GATCC------------AATT-----GT----A----T----T-----A---T---GCCTC-CTCC-TC---CTCACGT--ATTTGG--TG-------CTATTG--AAC--ATG-----TA-T-----------------------------------TAAT-A-TAC-TAGTA-----TT-G-T-ACC--CTCTG--AA--A--TA-TTG---TT--T-ATA-T----AA-T-TATATTTATA-A----ATGT-A-------CT-TCA-TATA--CCA-TTG-ATA--A-TGGTTTG--GCGAAAT
gi|4 : TTGGAAAATCTTTTGTTAA-GTTCAGAA-CAACAAA---TCATTGTT---TGCCAATAGAAGTAAGTAGGTAGGCGG-CATGGAATT-CCTACAATTGATAGAAA-CAGCACAC---G-T-GTACTGG-TAAATTAGTTCAGACGAATAC-CACTTCCTCTTAGAA--TGCAATTCCTTAT------------AAGACTA-CTTGGCTTCT-AGAT---A-----ATATACCAAGCACACTGCAT-TTCAGAGAA-----TT-AAC----TTT--TTAAA-----AAAATCTATTT---ACCAGGTA----CATTGT---ATG----T-ATATATATATACATATATAT--TCATTTCT--------AAAG-CCAG-AAG-T--TAGTCTG---CTG-ACT-CCCTT--------------AATTATGATATTCATCAAATTCTC-A-AATCT------------GTTT-----GT----A----aaatgaaatgaaa
gi|5 : T--TCATTTCT--------AAAATCCAG-GAGTT--TTGTCTG---CT--TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCT-A-GATCT-------------TTG-----GT----AGTG-T----T-----AGATT---CCCCT-CTCCATA---TGCATGTC-ATCTTG--TGTAGTCTTCTAGTGACAAT--ATAATTATTA-TGTTTTTTTTGGCTTTTT-------------TATTATCAT-A-TGTATCACAC-A-TTTGG-T-GCCA-GTTTG--AA--T--AA-TTG---TT--T-ATA-TA---AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCGTTGTA--CAC-TAG-ATA--A-TTGTa
gi|6 : T--TCATTTCT--------AAAATCCAG-GAG-T--TTGTCTG---CTG-TCC-TCCTTATGATATTTTTA--A------ATATTTATCAAATTCCTAA-GATCT-------------TTTGGTGAGT----G----T----T-----A---T---TCCTC-CTCT-TCATGTGCATGT--ATCTTG--TGTAGTT--CTAGTG--AAC--ATA-----TA-TA-------TATGTTTTTTTTGGGCTTTTTTTA-TTTCAT-A-T---GTATACAA-TTT-G-T-GCC--GTTTG--AA--T--AA-TTG---TT--T-ATA-T----AA-T-CATAAAAATG-AATCCATGT-A-------CC-TCA-TGTA--CCA-CTG-ATA--A-TGGTaaatatgaaa
gi|7 : CAAATTT--AAAAT---CTT---A--AAAAAAAACC----TCGCATG----T-AT----------------AT--TCATCTCT--------AAAATCCAA-GAG-T--TAGTCTG---CTG-TCC-CCCTT--------------A------ACATTTATCAAATTCCT-A-GATCT------------ACTT-----GT----A----TGTATC-----A---T---GCTTC-CTCC-TC---TTCATGT--ATTTTG--TG-------CTATTG--AAC--ATA-----CA-TA-------TG--------------------TA-TGTATT-A-T---TTATAT-A-CTT-C-T-AC----------------------G---TC--T-ATC-TGGGGAA-T-TATATT-----A----ATGT-A-------CC-TCA-GGTA--CCA-TTG-ATA--A-TGGTTTG-AGTGAAaaaattgaa
gi|8 : --TAGCCTG---CTG-GCC-CTCTT--------------G------ATATTTATCAAATTCCT-A-GATCTATTTGTAGATCTATTT-----GT----A----TGTATT-----A---T---GCCTC-CTC-------TTCACGT--ATCTTG--TG-------CTTTTG--AAC--ATA-----TAATG-------CG--------------------TA-TATATT-A-T---TTATAT-A-CTT-G-T-ACC--CGTTG--AA--C--TA-TTG---TT--T-ATA-T----AA-T-TATATTT---------CTGT-A-------CC-TCA-TGTA--CCA-TTG-ATA--A-TGGTTTG-AGCAAAtaaatgaattg
gi|9 : TATCAACTCTACGAAAAGAATT-TTTGACTTCT-A-----------------CCAAACACACTGAAA-TTCAGAGAA-----TT-AATGACATCA--TCGAA-------------------------------C----T---GTG----A-AT----------------AT--TCATTTCT--------AAACTCCAG-GAG-T--TGATCTG---CTG-TCC-CCCTT--------------T------GTATTTATCAAATTCCC-A-AATCT------------ATTT-----GTATACA----T----T-----A---T---GCCTC-CTCC-TC---TTCGTGT--ATCTTG--TG-------CTAATC--AAC--ATA-----TA-TG-------Ttaaatgaattgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGCTCTCATCAGAAGAAATCAAACCTTATTTAATATTCACTTTTGTGAAGGAACAAACGGCCAGTTTCCTTGCCTTCATCTGAATGTTATGGGATTTC
Unaligned ( gi|19 ): TTATATACTTACTTGTGGTATACGTCTGTTGTTTATGGTAAATGTATTTCGCACCCCATACATACCATTAAATGTGGTCTGAACAAATAATGAATT