lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222 888888888888888888 3 444 555555555555555555555555555 44 11 666666666666666666666666 1111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 11 44 000000000000000000000000000000000000000000000000000 1 2 1 4 1 3 11 1 1 1 1111 2 11 1 6666
lowQualScore : 5 4 888888 3 3 333333333333333333 44 3 99 0 6 333 8888 55 555555555555555555555555555 3 3 6 4 3 77 4 777 9 4 88 4 4 4 00 333333333333333333333333 4 8888 66 4 8 0 4 4 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 3 000 11 8 2 33 111111111111111111111111111111111111111111111111111 4 0 2 2 0 0 3 2 0 1 33 3 0 2 0 4 0 4444 7 33 0 0000 2
lowQualScore : . . ...... . . .................. .. . .. . . ... .... .. ........................... . . . . . .. . ... . . .. . . . .. ........................ . .... .. . . . . . ................................................................................................................................................ . . ... .. . . .. ................................................... . . . . . . . . . . .. . . . . . . .... . .. . .... .
lowQualScore : 7 3 666666 1 1 666666666666666666 66 3 22 0 7 333 3333 11 111111111111111111111111111 3 3 7 7 3 55 0 000 8 4 11 4 4 4 66 444444444444444444444444 4 3333 11 4 9 1 4 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 3 000 00 0 5 88 222222222222222222222222222222222222222222222222222 0 0 8 2 0 0 2 0 0 5 88 2 0 5 8 0 0 8888 5 55 0 2222 0
consensus : NGACTTTTGCGA-GATGGGCTGAC-TTTT-----ACAGTTTACGGCTGACTTG-GAC-ACGAT---CAT-AATATA-CG-GAGAC--GTTTT-C--GTGTCATATC-AATATACA--TGAATT--A-CGCGATG-AACCGAA-TGC--AA--TGT-ACG-A---AG-ATG-TTCAA-ATTGTC-TCAACGT--TT-TT---AAAT-AT-A-TTTCA-T-ATTTT--AAAATCCAT-----T-ANT-------------GA-GG----T--AA-G-AACT-GAGA-CA---AAT------N----TTA----AG-A--T-GG--TTCA-GGAAATGCGCCAA-CGTT-TCATAT--GATANGT-TTGCTGG-----CGT--AAAGCGA-TGTA-CATGTAGTT-CGT--ACCAGTNAAG-GT--T--ATA--T-TTCAAAAGT--AAA--TT-ATGNTGT-ACTTTTTA---TTAACA-TAAGGAATTTC-CACATATTAAAACAAACGCGCT-ACC--TTTTTCTAANTCA-GAATCCTTGCGT-AT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAANT-GCC-A--CAA-AAC-NG-ACAA-GC-GGAGAAA
Reference ( gi|4 ) : TGACTTTTGCGA-GATGGGCTGAC-TTT------ACAGTTTACGGCTGACTTG-GAC-ACGA----AATGAATATAGCGTGAGAC--GTTTT-C--GT-TCATATC-AATATACATTTGAATT--A-CGCGATG-AAACGGACTGC--AA--TA--AC--A---AG-ATG-TTCAA-ATTGCC-TCAACGTGGTT-TT---AAGT-AT-A-TTTCA-T-ATTTT--AAAATCCAT-----TTAAT-------------GA-GG----T--AA-G-AACT-GAGA-CA---GAT------C----TTA----AG-A--T-GG--TTCA-GGAAATGCGCCAGCCGTT-ACATAT--GATAAGTATTG-TGC-----CATACAAAGCGAGTGTA-CATGTAGTTCCGT--ACCAGTGAAG-GT--T--ATA--T-TTCAGAAGT--AAA--TT-ATGGTG--ACTTTTT----TCAGCAGTAAGGAATTTTCCACATATT-AAACAAAT-TGC--G----TTTTTCTAAATCA-GAATCCATGCAT-ATGAAATGTTCGAATCA-TCCTGTGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGTACAATT-GCC-A--CAACAAC-TG-ACAATACGGGAGAGA
gi|1 : GACTTTTGCGA-GATGGGCTGAC-TTTTAGTACACGTTTTAC-GCTGACTT--GAC-ACGATC--AATG-ATATA-CG-GAGACGTGTTTT-C--GTGTCATACT-CATATACA--TAAATT--A-CGCGAT---AATAGA-TGTCAAA--TAT-AC--T---AG-AGGTTTCAACATTGCCATCAACGT--TT-TT---AA-T-AT-ATTTTCA-TAATTTTA-AAAAACCA------TTAAT-------------GA-GG----T--AA-GAAACT-GAGA-CA----AT------A----T------AGCA--T-GGGATTCAGGGAAATGCGCCAAGCGTTAACATAT--GAAAGGT-TTGCTGC-----CGTTAAAAGCGA-TGTA-CATG-AATT-CGT--A-CAGTCAAG-CTA-TCGATA--T-TCCAGAAGT--GAAACTT-ATGGTAGTACTTATTCACATAAGC--TAATGAATAT--CACATATTAAAACAAATGTGCT-G----TTTTTCTAGATCA-GAAACCTTGCAT-AT-AAATG-TCGAATCATTCCTATGCAAAATATAGGAATGATA-AGCTTCACAAA-CGATGTACAATTGGCC-AATGAACAAC-GG-ACAA-AC-GGAGAA
gi|3 : tgGACTTTTGCGA-GATGGGCTGAC-TTTT-----ACAGTTTACGCCGAACTTG-GACCACGAT---AA--AAT-TA---CGAGAC---TGTT-C--GT-TCA-ATCCAATATAC--------------GCAATG-AA-CGA--TGC--AA--TGTTACGAA---AT-ATG-TTCAA--TCGTC-TCAACGT--TT-TT---AAAT-AT-A-TTTCA-T-ATTTT--AAAATCCAT-----T-ACT-------------GA-GG----T--AA-G-AACT-GAAA-CAT--AATAG----C----ATC----AG----C-AG--TTCA-GGAAAT-------CTTTT-TCATAT--GATATGT-TTGCTGG-----CGTA--AAGCG--TGAA-CATGTAGTTC-GT--AC-AGTGAAGTAT--T--AT---T-TTCAAAAGTTTAAA--TT-ATGCTGT-ACTTTTT----ATAACA-TA-GGAATTT---ACACATTGAAACAA---CGC--ACCTATTTTTCTAATTCA-GAATCC-TGCGT-AT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-T-ATGCACAAAT-GCCAA--CAA-AACATGAACAAAGCCGGAGAA
gi|2 : tgGACTTTTGCGA-GATGGGCTGAC-TTTTT----ACAGTTTACGGC-GACTTGTGAC-ACGATT--AATAAATATTACG-GAGAC--GTTTTTC--GTGTCATATCCAATATAC--------T----CACGATG-AACCGA--TGC--AA--TGT-ACG-A---AGCATG-TTCAA-ATCGTC-TCA-CGT--TT-TA---AAAT-AT-A-TTTCA-T-ATTTTTTAAAATCCAT-----TACGT-------------GA-GGGGTTT--AA-G-AACTAGAGAACG---AATAATGGGC----ATC----AGCA--TTGG--TTCA-GGAAAT-------CTTTT-TCATATTGGATATGT-TTGCTGCGCTTTTTTAGAAAGCGA-TGAA-AAT-TAG---CGTTTAC-AGTAA---GT--T--ATA--TGTTCAAAAGA--AAA--TTTATGCTGT-ACTTTTTA---TTA--AATA-GGAATTCTACACATG---AAACAAAC--GC--ACCA-TTTTTCTAATTCAAGAATCCTTGCGTTAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAACTTGATGCACAAAT-GCC-A--CAA-AAC-AG-ACAA-GC-GGAGAGtagggcttccattaattgactgtttactatcc
gi|9 : tgGACTTTTGCGA-GATGAGCTGACTTTT------ACAGTTTACGACTGACTTG-GAC-ACGAT---CAT-AATATA-CG-GAGAC--GTTTT-C--GTGTCATGTC-AATATGTATATGAATT--A-CGCGAT--AAACTGA-TGC--AA--TGT-ACG-A---AG-ATG-TTCAA-ATTGTC-TCAACGT--TC-TT---AAAT-AA-A-TTTCA-T-ATTTG--AAAATACA------TGACT-------------GACGG----T--AC-G-AATT-GAGA-CAAT-AAC------G----CTA----GC-A--T-GC--TTTA--GAAATGCGCTAG-CGTT-TCATGT----TAGGT-TTG-
gi|10 : tgGACTTTTGCGA-GATGGGCTGAC-TTTTTT---AAAGTTTACGGCTGACTTA-GAC-ACGAT---CAT-AATATA-CG-GAGGC--GTTTT-C--GTGTCATATC-AATCTACAT--GATTT--A-CGCGATG-AA-CGCA-TGC--AA--TGT-ACG-A---AG-ATG-TTCAA-ATTATC-TGAACGT--TC-TT---AAAT-AA-A-TTTCA-T-ATTTG--AAAATCCAT-----G-ACT-------------GA-GGG---T--AT-G-AAAG-GAGG-CA------------------------------T-GC--ATCA-GGAAATGC
gi|7 : ctgGGCCTTTGCGAAGATGGGCTGAC-TTTT-----ACAGTTTACGGCTGACTTG-GAC-ACGAT---CATCAATA---CGGGATAT--GTTTT-CGTGT-CCATATC-AATATACA--TGAATT--ACCGCGATATGAACCGA-TGC--AA--TGT-AC--G---AG-ATG--TCAA-ACTGTC-TCAACGT--TA-TT---AAAT-ATAA-TTTCATT-ATTTG--AAAATCCATGACCGT--AT--------------A-GG----T--AACG-AAAT-GAGA-CATT-AAC------G----TTA----A--C--T-GC--TTCA-GGAAATGCTCTAA-CGTT-TCATAT----TAA-T-TTGTTGG-----CGT---AAGC-----TA-TGTTTAGTT-CGC--A-CAGTT-AT-GTAAT--ATT--T-TTCAAAAttttg
gi|8 : GACTTTTGCGA-GATGGGCTGACTTTT------ACAGTTTACGACTGACTTT-GAC-ACGATT--AA--AATATA-CG-GAGGT--GTTTT-C--GTGCCATATC-AATATACA--TGAATTAAA-TGCGATG-AACCGA--TGC--AA--TGT-ACG-A---AG-ATG-TTCAATATGGTC-TCAAC----TT-TTTAAAAATAAT-A-TTT-A-T-AATCT--TAAATCCAT-----T--ATGGGGGAGGGGGGGGG-GG----TTAAA-G-AACT-GAGT-CA----AT------T----TTGCATCAGCATTT-TG--CTCAGGGAAATGCACCA-TCGTT-TCAT-----ACAAAT-TTGCTGG-----CGT-TAAAGCGA-TGTAGCATGTAGTTaa
gi|13 : gGACTTTTGCGA-GATAGGCTGAC-TTTT-----ACAGTTTACGGCTGACTTG-GAC-ACGATCATAATTAGTATA-CG-GAGAT--GTTTT-C--GTGTCATATC-AGTATACA--TGAATT--A-CGTGATG-AACCGA--TGC--AA--T---GT--A---TG-ATG-TTCAA-ATTGTC-TCAACGT--TT-TT---at
gi|12 : GACTTTTACGA-GATGGGCTGACTTTT------ACAGGTTACGACTGACTCG-GAC-ACGAT---CAT-AATATA-CG-AAGAC--GTTTT-C--GTGTCATATC-AATATACA--TGAATT--A-CGTGATG-AACCGA--TGC--AATGTA--TG--G---AG-GTG-TTCAA-ATTTTC-TCTGCGT--TC-TT---AAAT-
gi|16 : gGACTTTTGCGA-GATGGGCTGACTTTT------ACAGTCAACGACTGACTTG-GAC-A
gi|15 : gGACGTTTGCGA-GGTGAACGGAC-TTT------ACAGTTAAAGGGTGACTCT-GAC-ACGA----tttaaacctacgtattgtatggaagctcgttatcgttaaattatatatccaaatgctagta
gi|22 : taataatataaaaggctgtttattaGACTTTTGCGA-GATGGGCTGAC-TTT------gcacaatacacggaaacattgtagtgacaactgtgtaccctgatttac
gi|11 : tacagCTTTTGCGA-GATGGGCTGAC-TTTT-----ACAGTTTACGGCTGACTTG-GAC-ACGAT---CAT-AATATA-CG-GATAT--GTTTT-C--GTGTCATATC-AATATACA--TGAATT--A-CGCGATG-AACCGA--TGC--AA--TGT-ACG-A---AG-ATG-TTCAA-ACTGTC-TCAACGTtac
gi|6 : ttgtcatcatatttgtatctatgggacaagattcattaggtgtccgtccactggcCCTTTGCGAAGATGGGCTGACTTTT------ACAG-TTACGGCTGACTTG-GAC-ACGAT---CAT-AATA---CGGGATAT--GTTTT-CGTGT-CCATATC-AATATACA-TCGAATT--ACCGCGATT-GAACCGA-TGC--AA--TG--GT--ACGCAG-ATG-TC--A-ACTGTC-TCAAC--CGTTATT---AAAT-A--A-TTTAT-T-ATTGT--GAAAATCATGAC--CTATA-------------GC-GG----T--AC-GAAAAT-GAGA-CATTTAAT------CG---TTA----AC-C--C-TGCCTTCA-GGAAATGC-CTAA-CGTT-TCATAT--TAT--TTGTTG-GGC--------GTGAAGCCTATGT----TGTA--TTCG----CCAGTT-AT-GT--A--ATAATT-TTCAAAA----AAA--TT-Ata
gi|17 : gC--GTTTT-C--GTGTCATAGC-AATATAC--CTGAAGT--A-CGCGATG-AACCGA--TGC--AA--TGT-ACG-A---AG-ATG-TTCAA-ACTGTC-TCAACGT
gi|5 : -A-TTTCA-T-ATTTT--AAAATCTA------TTACT-------------GA-GGT---T--AA-G-AACT-GAGA-CA----AT------TAGCATTA----AC-A--T-GG--TTCA-GGAAATGCACCAG-CGTT-TCAT-----ATAAGT-TTGCTGG-----CGT--AAAGCGA-TGTG-CATGTAGTT-CGT--A-CAGTCAAG-----T--AAAT-T-TTCAAAAGTG-AAA--TT-GTGGTGT-ACTTTTTA---TTGATA--AAGGAA-TTCCCACAAATTAAAACAAACGTACTAT----TTTTTCTAAATCA-GAATCCTTGCGT-AC-AAATGTTCAAATAA-TCTT-TGCAAAAGAATGGAA--ATGTAGATTCGCAAC-TGATG-ACAATT-GCC-A--CAA-AAC-TG-ACAA-GC-GGAGAAtct
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTTACAGGTAACGGTTTGTTTTGACAAACGCTTTTTATACGGAAGCCTTTGTGTGGCATATATGTATATATGAATTGGGTATTATACCGATGCAGTGTACGGCAGTATTCAGGTTGCCCAAACA
Unaligned ( gi|18 ): TCAAAATAATATTTATAATCATTGGGGGGGGGGGGGGGACAAGAGCTTAAAAAACAATTTCAGCATTCAAATGCACATC
Unaligned ( gi|19 ): ACATGTATACATGAAATAAGTGACAAACCAATGTTATGTACAGAATTGCACAAGTTGTCCAAACATTAT
Unaligned ( gi|20 ): AAACAAACAAACGGAGAAATGGGAGTGGCTTCCATTAATTAACTGGACAGTGGTTTACTATCC
Unaligned ( gi|21 ): TTGTTTTGCATGCATGAAAAGGTGTAGCCAGGTGCCTAG
Alignments
lowQualScore : 3 22222222222222222222 1111111 7777777777777777777777777777777 11 111111 2222 222222 11 22222 222222222222 1111 11 2222222222 1 555555 1 11 22222 111 1111
lowQualScore : 5 2 33 66666 2 66 2 666 6666 2 2 2 2 2 33 2 2 2 2 33 66 33 5 33 2 0 2 33 2 2 33 5 5 2 2 33 0 55 4 66 4 4 4 55 4 77777777777777777777 777 4 3333333 4 8 4 4 4444444444444444444444444444444 11 8 888888 4 2222 55 4 0 5 5 5 888888 5 5 00 2 5 11111 444444444444 999 5 5 5555 55 1 8 0 0 11 3 0000000000 88 0 2 0 6 0 8 333333 1 8 6 8 8 0 8 6 11 0 8 6 1 88 88888 222 8888 8
lowQualScore : . . .. ..... . .. . ... .... . . . . . .. . . . . .. .. .. . .. . . . .. . . .. . . . . .. . .. . .. . . . .. . .................... ... . ....... . . . . ............................... .. . ...... . .... .. . . . . . ...... . . .. . . ..... ............ ... . . .... .. . . . . .. . .......... .. . . . . . . ...... . . . . . . . . .. . . . . .. ..... ... .... .
lowQualScore : 3 5 44 22222 7 33 9 000 1111 9 9 9 9 7 77 7 7 9 9 77 33 77 3 77 7 5 7 77 7 7 11 3 3 7 7 99 3 00 0 22 0 0 0 55 0 22222222222222222222 000 0 0000000 0 0 0 0 6666666666666666666666666666666 00 0 999999 4 8888 44 4 2 0 0 0 111111 0 0 11 5 0 00000 000000000000 666 7 7 2222 88 0 0 8 8 66 2 4444444444 88 0 2 8 8 8 0 888888 0 0 0 0 0 8 0 0 00 8 0 4 0 88 00000 000 6666 0
consensus : NGACTTTTGCGA-GATGGGCTGAC-TTTT--A-----CAGTTTACGGCTGACTTG-GAC--ACGATC-A-T-AA----TA-TA-C-G-GAGACG-T--TTTCGTGT-C-ATAT-C-AATA--TACAT--GAATT--A-CGCG--A-TGAACCG-A-TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AAAT-AT-A-TTTCA-T-A--TTTT-AAAATCCAT----T-A------------CTG---A-GG----T--AA-G-AACT-GAG-ACA---AAT-------G---T---TA--AN-A--TGG--TTCA-GGAAATGCGCCAG-CGTT-TCATAT--GATAAGT-TTGCT-G-GCG-T------AAAG-CGA-TGTA-CATGTAGTT-CG--TACCAGTNAAG-GT--T--ATA--T-TT-CAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAA-TTTCCACACATTGAAACAAA-CGCG-CTA--TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
Reference ( family-2395 ) : NGACTTTTGCGA-GATGGGCTGAC-TTTT--A-----CAGTTTACGGCTGACTTG-GAC--ACGATC-A-T-AA----TA-TA-C-G-GAGACG-T--TTTCGTGT-C-ATAT-C-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGAA-TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AAAT-AT-A-TTTCA-T-A--TTTT-AAAATCCAT----T-A------------NTG---A-GG----T--AA-G-AACT-GAG-ACA---AAT-------N---T---TA--AG-A--TGG--TTCA-GGAAATGCGCCAA-CGTT-TCATAT--GATANGT-TTGCT-G-GCG-T------AAAG-CGA-TGTA-CATGTAGTT-CG--TACCAGTNAAG-GT--T--ATA--T-TT-CAAAAG--T-AAA--TTATGNT-GTACTTTTTATTAACA-TAAG-----GAA-TTTCCACATATTAAAACAAA-CGCG-CTACCTTTTTCTAANTC-AGAATCCTTGCG-TAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAANTGCC-ACAA-----AAC--NGACAA-G--C-GGAGAAA
gi|1 : GACTTTTGCGA-GATGGGCTGAC-TTTT--AGTACACGTTTTACG-CTGACTTG--AC--ACGATC-AAT-GA----TA-TA-C-G-GAGACG-TGTTTTCGTGT-C-ATAC-T-CATA--TACAT--AAATT--A-CGCG--A-T-AATAG-A-TGTCAAAT-AT-ACTAGAG-GT-TTCAACATTGCCATCAA-CGT--TTTT---AAT-AT-ATTTTCA-TAA--TTTTAAAAAACCAT----T-A------------ATG---A-GG----T--AA-GAAACT-GAG-AC----AAT-------A---T-------AGCA--TGGGATTCAGGGAAATGCGCCAAGCGTTAACATAT--GAAAGGT-TTGCT-G-CCG-TTA----AAAG-CGA-TGTA-CATG-AATT-CG--TA-CAGTCAAG-CTA-TCGATA--T-TC-CAGAAG--T-GAAACTTATGGTAGTAC---TTATTCACA-TAAGCTAATGAA-TAT-CACATATTAAAACAAA-TGTG-CTG--TTTTTCTAGATC-AGAAACCTTGCA-TAT-AAATG-TCGAATCATTCCTATGCAAAATATAGGAATGATA-AGCTTCACAAA-CGATGTACAATTGGC--CAATGAACAAC--GGACAA-A--C-GGAGAAA
gi|10 : tgGACTTTTGCGA-GATGGGCTGAC-TTTTTTA-----AAGTTTACGGCTGACTTA-GAC--ACGATC-A-T-AA----TA-TA-C-G-GAGGCG-T--TTTCGTGT-C-ATAT-C-AATC--TACAT--GATTT--A-CGCG--A-TGAAC-GCA-TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTATC-TGAA-CGT--TCTT--AAAT-AA-A-TTTCA-T-A--TTTG-AAAATCCAT----G-A------------CTG---A-GGG---T--AT-G-AAAG-GAG-GCA-------------------------------TGC--ATCA-GGAAATGC
gi|11 : ctgCTTTTGCGA-GATGGGCTGAC-TTTT--A-----CAGTTTACGGCTGACTTG-GAC--ACGATC-A-T-AA----TA-TA-C-G-GATATG-T--TTTCGTGT-C-ATAT-C-AATA--TACAT--GAATT--A-CGCG--A-TGAACCG-A-TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--Tttttg
gi|12 : ttgtcatcatatttgtatctatgggacaagattcattaggtgtccgtccactggcGACTTTTACGA-GATGGGCTGAC-TTTT--A-----CAGGTTACGACTGACTCG-GAC--ACGATC-A-T-AA----TA-TA-C-G-AAGACG-T--TTTCGTGT-C-ATAT-C-AATA--TACAT--GAATT--A-CGTG--A-TGAACCG-A-TGC--AAT-GT-ATGG-AG-GTGTTCAA-ATTTTC-TCTG-CGT--TCTT--AAAT-a
gi|13 : gGACTTTTGCGA-GATAGGCTGAC-TTTT--A-----CAGTTTACGGCTGACTTG-GAC--ACGATC-A-T-AATTAGTA-TA-C-G-GAGATG-T--TTTCGTGT-C-ATAT-C-AGTA--TACAT--GAATT--A-CGTG--A-TGAACCG-A-TGC--AAT-GT-AT----G-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--
gi|14 : -TTTT--A-----CAGGTAACGGTTTGTTTT-GACAAACGCTT-T-T-------TA-TA-C-G-GAAGCC-T--TTGTGTGG-C-ATAT-A-TGTA--TATAT--GAATT--G-GGTA--T-TATACCG-A-TGC--AGT-GT-ACGG-CA-GTATTCAG-GTTGCC-CAAA-C
gi|15 : GACGTTTGCGA-GGTGAACGGAC-TTT---A-----CAGTTAAAGGGTGACTCT-GAC--ACGAGC-A-C-AA----TA-CA-C-G-GAAACA-T--TGTAGTGA-C-Aa
gi|16 : taataatataaaaggctgtttattaGACTTTTGCGA-GATGGGCTGAC-TTTT--A-----CAGTCAACGACTGACTTG-GAC--Aactgtgtaccctgatttac
gi|17 : gCG-T--TTTCGTGT-C-ATAG-C-AATA--TACCT--GAAGT--A-CGCG--A-TGAACCG-A-TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--TCTtttaaacctacgtattgtatggaagctcgttatcgttaaattatatatccaaatgctagta
gi|19 : TA--TACAT--GAAAT--A-AGTG--A-CAAACC-AA-TGT--TAT-GT-ACAG-AA-TTGCACAA-GTTGTC-CAAA-CAT--T
gi|2 : acatgGACTTTTGCGA-GATGGGCTGACTTTTT--A-----CAGTTTACGGC-GACTTGTGAC--ACGATTAA-TAAA----TATTA-C-G-GAGACGTT--TTTCGTGT-C-ATATCC-AATA--TAC-T-----------CACG--A-TGAACCG-A-TGC--AAT-GT-ACGA-AGCATGTTCAA-ATCGTC-TC-A-CGT--TTTA--AAAT-AT-A-TTTCA-T-ATTTTTT-AAAATCCAT----T-AC-----------GTG---A-GGGGTTT--AA-G-AACTAGAGAACG---AATAATGGGCA---T---CA--GC-AT-TGG--TTCA-GGAAAT-C------TTTT-TCATATTGGATATGT-TTGCT-GCGCT-TTTTTAGAAAG-CGA-TGAA-AAT-TAG---CGTTTA-CAGTAA---GT--T--ATA--TGTT-CAAAAG--A-AAAT-TTATGCT-GTACTTTTTATTAA-A-T-AG-----GAA--TTCTACACA-TGAAACAAA-CGCA-CCA--TTTTTCTAATTCAAGAATCCTTGCGTTAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAACTTGATGCACAAATGCC-ACAA-----AAC--AGACAA-G--C-GGAGAGAat
gi|22 : tgGACTTTTGCGA-GATGGGCTGAC-TTTT--A-----C
gi|3 : tacagGACTTTTGCGA-GATGGGCTGAC-TTTT--A-----CAGTTTACGCCGAACTTG-GACC-ACGATA-A---AA----T--TA-C-G--AGAC--T--GTTCGT-T-C-A-AT-CCAATA--TAC--------------GCA--A-TGAAC--GA-TGC--AAT-GTTACGA-AATATGTTCAA--TCGTC-TCAA-CGT--TTTT--AAAT-AT-A-TTTCA-T-A--TTTT-AAAATCCAT----T-A------------CTG---A-GG----T--AA-G-AACT-GAA-ACAT--AAT-------A---G---CATCAG----CAG--TTCA-GGAAAT-C------TTTT-TCATAT--GATATGT-TTGCT-G-GCG-T------AAAG-CG--TGAA-CATGTAGTT-CG--TA-CAGTGAAGTAT--T--AT---T-TT-CAAAAGTTT-AAA--TTATGCT-GTACTTTTTA-TAACA-T-AG-----GAA-TTT--ACACATTGAAAC-AA-CGCACCTA--TTTTTCTAATTC-AGAATCC-TGCG-TAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-T-ATGCACAAATGCCAACAA-----AACATGAACAA-AGCC-GGAGAAA
gi|4 : tgGACTTTTGCGA-GATGGGCTGAC-TTT---A-----CAGTTTACGGCTGACTTG-GAC--ACGA-A-A-TGAA----TA-TAGC-GTGAGACG-T--TTTCGT-T-C-ATAT-C-AATA--TACATTTGAATT--A-CGCG--A-TGAAACGGACTGC--AAT-A--AC-A-AG-ATGTTCAA-ATTGCC-TCAA-CGTGGTTTT--AAGT-AT-A-TTTCA-T-A--TTTT-AAAATCCAT----TTA------------ATG---A-GG----T--AA-G-AACT-GAG-ACA---GAT-------C---T---TA--AG-A--TGG--TTCA-GGAAATGCGCCAGCCGTT-ACATAT--GATAAGTATTG-T-G-CCA-TAC----AAAG-CGAGTGTA-CATGTAGTTCCG--TACCAGTGAAG-GT--T--ATA--T-TT-CAGAAG--T-AAA--TTATGGT-G-ACTTTTT-TCAGCAGTAAG-----GAATTTTCCACATATT-AAACAAATTGCG------TTTTTCTAAATC-AGAATCCATGCA-TATGAAATGTTCGAATCA-TCCTGTGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGTACAATTGCC-ACAAC----AAC--TGACAATA--CGGGAGAGAtagggcttccattaattgactgtttactatcc
gi|5 : t-A-TTTCA-T-A--TTTT-AAAATCTAT----T-A------------CTG---A-GG----TT-AA-G-AACT-GAG-ACA---ATT-------AGCAT---TA--AC-A--TGG--TTCA-GGAAATGCACCAG-CGTT-TCATAT-----AAGT-TTGCT-G-GCG-T------AAAG-CGA-TGTG-CATGTAGTT-CG--TAC-AGTCAAG-----T--AAA--T-TTTCAAAAG--TGAAA--TTGTGGT-GTACTTTTTATTGATA--AAG-----GAA-TTCCCACAAATTAAAACAAA-CGTA-CTAT-TTTTTCTAAATC-AGAATCCTTGCG-TAC-AAATGTTCAAATAA-TCTT-TGCAAAAGAATGGAA--ATGTAGATTCGCAAC-TGATG-ACAATTGCC-ACAA-----AAC--TGACAA-G--C-GGAGAAA
gi|6 : CCTTTGCGAAGATGGGCTGAC-TTTT--A-----CAGTT-ACGGCTGACTTG-GAC--ACGATC-A-T-AA----TA-CG---G-GATATG-T--TTTCGTGT-CCATAT-C-AATA--TACATC-GAATT--ACCGCG--ATTGAACCG-A-TGC--AATGGT-ACGC-AG-ATGTC--A-ACTGTC-TCAACCGT--TATT--AAAT-A--A-TTTAT-T-A--TTGT-GAAAATCATGACCT-A------------TAG---C-GG----T--AC-GAAAAT-GAG-ACATTTAATC------G---T---TA--AC-C--CTGCCTTCA-GGAAATGC-CTAA-CGTT-TCATAT----TA--T-TTGTTGG-GCG-T------GAAGCCTA-TGT----TGTA-TT-CG----CCAGTT-AT-GT--A--ATAATT-TT-CAAAA-----AAA--TTAtggagtggcttccattaattaactggtcaactatcc
gi|7 : gGGCCTTTGCGAAGATGGGCTGAC-TTTT--A-----CAGTTTACGGCTGACTTG-GAC--ACGATC-A-T-CA-----A-TA-CGG-GATATG-T--TTTCGTGTCC-ATAT-C-AATA--TACAT--GAATT--ACCGCGATA-TGAACCG-A-TGC--AAT-GT-ACG--AG-ATG-TCAA-ACTGTC-TCAA-CGT--TATT--AAAT-ATAA-TTTCATT-A--TTTG-AAAATCCAT----G-A------------CCGTATA-GG----T--AACG-AAAT-GAG-ACATT-AAC-------G---T---TA--A--C--TGC--TTCA-GGAAATGCTCTAA-CGTT-TCATAT----TAA-T-TTGTT-G-GCG-T-------AAG-CTA-TGT----T-TAGTT-CG--CA-CAGTT-AT-GTAAT--ATT--T-TT-CAAAA
gi|8 : GACTTTTGCGA-GATGGGCTGAC-TTTT--A-----CAGTTTACGACTGACTTT-GAC--ACGATT-A-A-AA----TA-TA-C-G-GAGGTG-T--TTTCGTGC-C-ATAT-C-AATA--TACAT--GAATTAAA-TGCG--A-TGAACCG-A-TGC--AAT-GT-ACGA-AG-ATGTTCAATATGGTC-TCAA-C-T--TTTTAAAAATAAT-A-TTT-A-T-A--ATCT-TAAATCCAT----T-ATGGGGGAGGGGGGGG---G-GG----TTAAA-G-AACT-GAG-TCA---ATT-------T---TGCATC--AGCATTTTG--CTCAGGGAAATGCACCAT-CGTT-TCAT-----ACAAAT-TTGCT-G-GCGTT------AAAG-CGA-TGTAGCATGTAGTT-aa
gi|9 : gGACTTTTGCGA-GATGAGCTGAC-TTTT--A-----CAGTTTACGACTGACTTG-GAC--ACGATC-A-T-AA----TA-TA-C-G-GAGACG-T--TTTCGTGT-C-ATGT-C-AATATGTATAT--GAATT--A-CGCG--A-TAAACTG-A-TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TCTT--AAAT-AA-A-TTTCA-T-A--TTTG-AAAATACAT----G-A------------CTG---ACGG----T--AC-G-AATT-GAG-ACAAT-AAC-------G---C---TA--GC-A--TGC--TTTA--GAAATGCGCTAG-CGTT-TCATGT----TAGGT-TTGat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCAAAATAATATTTATAATCATTGGGGGGGGGGGGGGGACAAGAGCTTAAAAAACAATTTCAGCATTCAAATGCACATC
Unaligned ( gi|20 ): AAACAAACAAACGGAGAAATGGGAGTGGCTTCCATTAATTAACTGGACAGTGGTTTACTATCC
Unaligned ( gi|21 ): TTGTTTTGCATGCATGAAAAGGTGTAGCCAGGTGCCTAG
Alignments
lowQualScore : 22222222222222222 666666666666666666666666666666 1 2222 222222222 11 111111 222222222222 1111 11 2222222222 111 11111 1 11 22222 111 1111
lowQualScore : 5 55 66666 2 2 33 666 2 6666 2 2 2 2 33 2 2 2 5 33 66 5555 33 2 33 33 2 2 33 5 5 2 2 33 0 55 4 4 66 4 99 4 44 99999999999999999 99999 8888 99 4 4 4 4 4 444444444444444444444444444444 4 4 3 0 66 4 4 2222 55 4 0 5 5 5 777777777 5 5 00 2 5 888888 444444444444 999 5 5 5555 55 8 0 0 11 3 0000000000 0 666 1 0 6 0 8 33333 1 8 6 8 8 0 8 6 11 0 8 6 1 88 88888 444 6666 8
lowQualScore : . .. ..... . . .. ... . .... . . . . .. . . . . .. .. .... .. . .. .. . . .. . . . . .. . .. . . .. . .. . .. ................. ..... .... .. . . . . . .............................. . . . . .. . . .... .. . . . . . ......... . . .. . . ...... ............ ... . . .... .. . . . .. . .......... . ... . . . . . ..... . . . . . . . . .. . . . . .. ..... ... .... .
lowQualScore : 3 99 22222 7 7 77 000 9 1111 9 9 9 9 77 7 7 7 7 77 33 9999 77 7 77 77 7 7 11 3 3 7 7 99 3 00 0 0 22 0 55 0 66 44444444444444444 99999 5555 55 0 0 0 0 0 999999999999999999999999999999 0 0 0 9 33 4 4 8888 77 4 2 0 0 0 111111111 0 0 11 5 7 111111 000000000000 666 7 7 2222 88 0 8 8 66 2 4444444444 8 222 4 8 4 8 0 66666 4 0 0 0 0 8 0 0 00 8 0 4 4 88 00000 222 0000 0
consensus : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------A---TTAGCA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TT-CAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
Reference ( family-2395 ) : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------G---TTAANA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TT-CAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
gi|1 : GACTTTTGCGA-GATGGGCTGACTTTT--AGTACACGTTTTACG-CTGACTTG--AC-A--CGATCAAT-GA-T----AT-A-C-G-GAGACGTGTTTT-CGTGT-C-ATACT-CATA--TACAT--AAATT--A-CGCG--A-T-AATAGA--TGTCAAAT-AT-ACTAGAG-GT-TTCAACATTGCCATCAA-CGT--TTTT--AATAT-AT--TTTCA-TAA-TTTTAAAAAACCATT-AA------------T----G---A-GG----T--AA-G-AAACT-GAG-ACA---A-T-------A---T-AGCA--TGGGATTCA-GGGAAATGCGCCAAGC-GTTAACATAT--GAAAGGT-TTGCT-G-CCG-TTA----A--AAG-CGA-TGTA-CATG-AATTC-G--TAC-AGTCAAG-CTA-TCGATA--T-TC-CAGAAG--T-GAAACTTATGGTAGTACTT---ATTCACA-TAAGCTAATGAATAT-C-ACATATTAAAACAAAT-GTG-CTG-TTTTTCTAGATC-AGAAACCTTGCA-TAT-AAATG-TCGAATCATTCCTATGCAAAATATAGGAATGATA-AGCTTCACAAA-CGATGTACAATTGGC--CAATGAACAAC--GGACAA-A--C-GGAGAAA
gi|10 : tgGACTTTTGCGA-GATGGGCTGACTTTTTTA-----AAGTTTACGGCTGACTTA-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGGCGT--TTT-CGTGT-C-ATATC-AATC--TACAT--GATTT--A-CGCG--A-TGAACGCA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTATC-TGAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-CCATG-AC------------T----G---AGGG----T--AT-G-AA-AG-GAG-GC-----------------------A--TGC--ATCA-GG-AAATGC
gi|11 : ctgCTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GATATGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--Tttttg
gi|12 : ttgtcatcatatttgtatctatgggacaagattcattaggtgtccgtccactggcGACTTTTACGA-GATGGGCTGACTTTT--A-----CAGGTTACGACTGACTCG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-AAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-ATGG-AG-GTGTTCAA-ATTTTC-TCTG-CGT--TCTT--AA-AT-a
gi|13 : gGACTTTTGCGA-GATAGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-TTAGTAT-A-C-G-GAGATGT--TTT-CGTGT-C-ATATC-AGTA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-AT----G-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--
gi|14 : TTTT--A-----CAGGTAACGGTTTGTTTT-GAC-AAACGCTTT-T----T----AT-A-C-G-GAAGCCT--TTG-TGTGG-C-ATATA-TGTA--TATAT--GAATT--G-GGTA--T-TATACCGA--TGC--AGT-GT-ACGG-CA-GTATTCAG-GTTGCC-CAAA-C
gi|15 : GACGTTTGCGA-GGTGAACGGACTTT---A-----CAGTTAAAGGGTGACTCT-GAC-A--CGAGCA-C-AA-T----AC-A-C-G-GAAACAT--TGT-AGTGA-C-Aa
gi|16 : taataatataaaaggctgtttattaGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTCAACGACTGACTTG-GAC-A--actgtgtaccctgatttac
gi|17 : gCGT--TTT-CGTGT-C-ATAGC-AATA--TACCT--GAAGT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--TCTtttaaacctacgtattgtatggaagctcgttatcgttaaattatatatccaaatgctagta
gi|19 : TA--TACAT--GAAAT--A-AGTG--A-CAAACCAA--TGT--TAT-GT-ACAG-AA-TTGCACAA-GTTGTC-CAAA-CAT--T
gi|2 : acatgGACTTTTGCGA-GATGGGCTGACTTTTT-A-----CAGTTTACGGC-GACTTGTGAC-A--CGATTAAT-AAAT----ATTA-C-G-GAGACGT--TTTTCGTGT-C-ATATCCAATA--TAC--------T----CACG--A-TGAACCGA--TGC--AAT-GT-ACGA-AGCATGTTCAA-ATCGTC-TC-A-CGT--TTTA--AA-AT-AT-ATTTCA-TATTTTTTAAAAT-CCATT-ACG-----------T----G---A-GGGGTTT--AA-G-AA-CTAGAGAACG---AATAATGGGCA---TCAGCAT-TGG--TTCA-GG-AAAT-C------T-TTTT-CATATTGGATATGT-TTGCT-GCGCT-TTTTTAGA--AAG-CGA-TGAA-AAT-TAG--C-GTTTA-CAGTAA---GT--T--ATA--TGTT-CAAAAG--A-AAAT-TTATGCT-GTACTTTTTATTAA-A-T-AG-----GAA-TT-CTACACA-TGAAACAAAC-GCA-CCA-TTTTTCTAATTCAAGAATCCTTGCGTTAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAACTTGATGCACAAATGCC-ACAA-----AAC--AGACAA-G--C-GGAGAGAat
gi|22 : tgGACTTTTGCGA-GATGGGCTGACTTTT--A-----C
gi|3 : tacagGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGCCGAACTTG-GACCA--CGATAA---AA-T-----T-A-C-G--AGAC-T--GTT-CGT-T-C-A-ATCCAATA--TAC--------------GCA--A-TGAAC-GA--TGC--AAT-GTTACGA-AATATGTTCAA--TCGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAA-ACAT--AATAGC----A---TCAGCA----G--TTCA-GG-AAAT-C------T-TTTT-CATAT--GATATGT-TTGCT-G-GCG-T------A--AAG-CG--TGAA-CATGTAGTTC-G--TA-CAGTGAAGTAT--T--AT---T-TT-CAAAAGTTT-AAA--TTATGCT-GTACTTTTTA-TAACA-T-AG-----GAATTT---ACACATTGAAAC-AAC-GCACCTA-TTTTTCTAATTC-AGAATCC-TGCG-TAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-T-ATGCACAAATGCCAACAA-----AACATGAACAA-AGCC-GGAGAAA
gi|4 : tgGACTTTTGCGA-GATGGGCTGACTTT---A-----CAGTTTACGGCTGACTTG-GAC-A--CGA-AA-TGAA-T----AT-AGC-GTGAGACGT--TTT-CGT-T-C-ATATC-AATA--TACATTTGAATT--A-CGCG--A-TGAAACGGACTGC--AAT-A--AC-A-AG-ATGTTCAA-ATTGCC-TCAA-CGTGGTTTT--AA-GT-AT-ATTTCA-TA--TTTTAAAAT-CCATTTAA------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---GAT-------C---TTAAGA--TGG--TTCA-GG-AAATGCGCCA-GCCGTTA-CATAT--GATAAGTATTG-T-G-CCA-T------ACAAAG-CGAGTGTA-CATGTAGTTCCG--TACCAGTGAAG-GT--T--ATA--T-TT-CAGAAG--T-AAA--TTATGGT-G-ACTTTTT-TCAGCAGTAAG-----GAATTTTCCACATATT-AAACAAATTGCG-----TTTTTCTAAATC-AGAATCCATGCA-TATGAAATGTTCGAATCA-TCCTGTGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGTACAATTGCC-ACAAC----AAC--TGACAATA--CGGGAGAGAtagggcttccattaattgactgtttactatcc
gi|5 : t-ATTTCA-TA--TTTTAAAAT-CTATT-AC------------T----G---A-GG----TT-AA-G-AA-CT-GAG-ACA---ATT-------AGCATTAACA--TGG--TTCA-GG-AAATGCACCA-GC-GTTT-CATAT-----AAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTG-CATGTAGTTC-G--TAC-AGTCAAG-----T--AAA--T-TTTCAAAAG--TGAAA--TTGTGGT-GTACTTTTTATTGATA--AAG-----GAATTC-CCACAAATTAAAACAAAC-GTA-CTATTTTTTCTAAATC-AGAATCCTTGCG-TAC-AAATGTTCAAATAA-TCTT-TGCAAAAGAATGGAA--ATGTAGATTCGCAAC-TGATG-ACAATTGCC-ACAA-----AAC--TGACAA-G--C-GGAGAAA
gi|6 : CCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTT-ACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AC-G---G-GATATGT--TTT-CGTGT-CCATATC-AATA--TACATC-GAATT--ACCGCG--ATTGAACCGA--TGC--AATGGT-ACGC-AG-ATGTC--A-ACTGTC-TCAACCGT--TATT--AA-AT-A--ATTTAT-TA--TTGTGAAAA-TCATG-AC------------CTATAG---C-GG----T--AC-GAAA-AT-GAG-ACATTTAATC------G---TTAACC--CTGCCTTCA-GG-AAATGC-CTA-AC-GTTT-CATAT----TA--T-TTGTTGG-GCG-T------G--AAGCCTA-TGT----TGTA-TTC-G----CCAGTT-AT-GT--A--ATAATT-TT-CAAAA-----AAA--TTAtggagtggcttccattaattaactggtcaactatcc
gi|7 : gGGCCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-CA------AT-A-CGG-GATATGT--TTT-CGTGTCC-ATATC-AATA--TACAT--GAATT--ACCGCGATA-TGAACCGA--TGC--AAT-GT-ACG--AG-ATG-TCAA-ACTGTC-TCAA-CGT--TATT--AA-AT-ATAATTTCATTA--TTTGAAAAT-CCATG-AC------------C----GTATA-GG----T--AACG-AA-AT-GAG-ACATT-AAC-------G---TTAAC---TGC--TTCA-GG-AAATGCTCTA-AC-GTTT-CATAT----TAA-T-TTGTT-G-GCG-T---------AAG-CTA-TGT----T-TAGTTC-G--CA-CAGTT-AT-GTAAT--ATT--T-TT-CAAAA
gi|8 : GACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGACTGACTTT-GAC-A--CGATTA-A-AA-T----AT-A-C-G-GAGGTGT--TTT-CGTGC-C-ATATC-AATA--TACAT--GAATTAAA-TGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAATATGGTC-TCAA-C-T--TTTTAAAA-ATAAT-ATTT-A-TA--ATCTTAAAT-CCATT-ATGGGGGAGGGGGGG----G---G-GG----TTAAA-G-AA-CT-GAG-TCA---ATTTTGC---A---TCAGCATTTTG--CTCAGGG-AAATGCACCA-TC-GTTT-CAT-----ACAAAT-TTGCT-G-GCGTT------A--AAG-CGA-TGTAGCATGTAGTTaa
gi|9 : gGACTTTTGCGA-GATGAGCTGACTTTT--A-----CAGTTTACGACTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATGTC-AATATGTATAT--GAATT--A-CGCG--A-TAAACTGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-ACATG-AC------------T----G---ACGG----T--AC-G-AA-TT-GAG-ACAAT-AAC-------G---CTAGCA--TGC--TTTA--G-AAATGCGCTA-GC-GTTT-CATGT----TAGGT-TTGat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCAAAATAATATTTATAATCATTGGGGGGGGGGGGGGGACAAGAGCTTAAAAAACAATTTCAGCATTCAAATGCACATC
Unaligned ( gi|20 ): AAACAAACAAACGGAGAAATGGGAGTGGCTTCCATTAATTAACTGGACAGTGGTTTACTATCC
Unaligned ( gi|21 ): TTGTTTTGCATGCATGAAAAGGTGTAGCCAGGTGCCTAG
Alignments
lowQualScore : 22222222222222222 1111 55555555555555 1111111 1 111 222222222 11 22222 22222222222222222 1111 11 2222222222 111 11111 1 11 22222 111 1111
lowQualScore : 5 55 66666 2 2 33 666 2 6666 2 2 2 2 33 2 2 2 5 33 66 5555 33 2 33 33 2 2 33 5 5 2 2 33 0 55 4 4 66 4 99 4 44 99999999999999999 99999 2222 55 4 4 4 4 4 66666666666666 2 2222222 4 4 3 0 66 4 4 3 888 55 4 0 5 5 5 777777777 5 5 00 2 5 11111 55555555555555555 5 5555 55 8 0 0 11 3 0000000000 0 666 1 0 6 0 8 33333 1 8 6 8 8 0 8 6 11 0 8 6 1 88 88888 444 6666 8
lowQualScore : . .. ..... . . .. ... . .... . . . . .. . . . . .. .. .... .. . .. .. . . .. . . . . .. . .. . . .. . .. . .. ................. ..... .... .. . . . . . .............. . ....... . . . . .. . . . ... .. . . . . . ......... . . .. . . ..... ................. . .... .. . . . .. . .......... . ... . . . . . ..... . . . . . . . . .. . . . . .. ..... ... .... .
lowQualScore : 3 99 22222 7 7 77 000 9 1111 9 9 9 9 77 7 7 7 7 77 33 9999 77 7 77 77 7 7 11 3 3 7 7 99 3 00 0 0 22 0 55 0 66 44444444444444444 99999 5555 55 0 0 0 0 0 66666666666666 8 9999999 0 0 0 9 33 4 4 6 333 77 4 2 0 0 0 111111111 0 0 11 5 7 00000 00000000000000000 7 2222 88 0 8 8 66 2 4444444444 8 222 4 8 4 8 0 66666 4 0 0 0 0 8 0 0 00 8 0 4 4 88 00000 222 0000 0
consensus : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------ATTAGCA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
Reference ( family-2395 ) : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------ATTAGCA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
gi|1 : GACTTTTGCGA-GATGGGCTGACTTTT--AGTACACGTTTTACG-CTGACTTG--AC-A--CGATCAAT-GA-T----AT-A-C-G-GAGACGTGTTTT-CGTGT-C-ATACT-CATA--TACAT--AAATT--A-CGCG--A-T-AATAGA--TGTCAAAT-AT-ACTAGAG-GT-TTCAACATTGCCATCAA-CGT--TTTT--AATAT-AT--TTTCA-TAA-TTTTAAAAAACCATT-AA------------T----G---A-GG----T--AA-G-AAACT-GAG-ACA---A-T-------AT-AGCA--TGGGATTCA-GGGAAATGCGCCAAGC-GTTAACATAT--GAAAGGT-TTGCT-G-CCG-TTA----A--AAG-CGA-TGTA-CATG-AATTC-G--TAC-AGTCAAG-CTA-TCGATA--T-TCCAGAAG--T-GAAACTTATGGTAGTACTT---ATTCACA-TAAGCTAATGAATAT-C-ACATATTAAAACAAAT-GTG-CTG-TTTTTCTAGATC-AGAAACCTTGCA-TAT-AAATG-TCGAATCATTCCTATGCAAAATATAGGAATGATA-AGCTTCACAAA-CGATGTACAATTGGC--CAATGAACAAC--GGACAA-A--C-GGAGAAA
gi|10 : tgGACTTTTGCGA-GATGGGCTGACTTTTTTA-----AAGTTTACGGCTGACTTA-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGGCGT--TTT-CGTGT-C-ATATC-AATC--TACAT--GATTT--A-CGCG--A-TGAACGCA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTATC-TGAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-CCATG-AC------------T----G---AGGG----T--AT-G-AA-AG-GAG---------------------GCA--TGC--ATCA-GG-AAATGC
gi|11 : ctgCTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GATATGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--Tttttg
gi|12 : ttgtcatcatatttgtatctatgggacaagattcattaggtgtccgtccactggcGACTTTTACGA-GATGGGCTGACTTTT--A-----CAGGTTACGACTGACTCG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-AAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-ATGG-AG-GTGTTCAA-ATTTTC-TCTG-CGT--TCTT--AA-AT-a
gi|13 : gGACTTTTGCGA-GATAGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-TTAGTAT-A-C-G-GAGATGT--TTT-CGTGT-C-ATATC-AGTA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-AT----G-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--
gi|14 : TTTT--A-----CAGGTAACGGTTTGTTTT-GAC-AAACGCTTT-T----T----AT-A-C-G-GAAGCCT--TTG-TGTGG-C-ATATA-TGTA--TATAT--GAATT--G-GGTA--T-TATACCGA--TGC--AGT-GT-ACGG-CA-GTATTCAG-GTTGCC-CAAA-C
gi|15 : GACGTTTGCGA-GGTGAACGGACTTT---A-----CAGTTAAAGGGTGACTCT-GAC-A--CGAGCA-C-AA-T----AC-A-C-G-GAAACAT--TGT-AGTGA-C-Aa
gi|16 : taataatataaaaggctgtttattaGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTCAACGACTGACTTG-GAC-A--actgtgtaccctgatttac
gi|17 : gCGT--TTT-CGTGT-C-ATAGC-AATA--TACCT--GAAGT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--TCTtttaaacctacgtattgtatggaagctcgttatcgttaaattatatatccaaatgctagta
gi|19 : TA--TACAT--GAAAT--A-AGTG--A-CAAACCAA--TGT--TAT-GT-ACAG-AA-TTGCACAA-GTTGTC-CAAA-CAT--T
gi|2 : acatgGACTTTTGCGA-GATGGGCTGACTTTTT-A-----CAGTTTACGGC-GACTTGTGAC-A--CGATTAAT-AAAT----ATTA-C-G-GAGACGT--TTTTCGTGT-C-ATATCCAATA--TAC--------T----CACG--A-TGAACCGA--TGC--AAT-GT-ACGA-AGCATGTTCAA-ATCGTC-TC-A-CGT--TTTA--AA-AT-AT-ATTTCA-TATTTTTTAAAAT-CCATT-ACG-----------T----G---A-GGGGTTT--AA-G-AA-CTAGAGAACG---AATAATGGGCATCAGCAT-TGG--TTCA-GG-AAAT-C------T-TTTT-CATATTGGATATGT-TTGCT-GCGCT-TTTTTAGA--AAG-CGA-TGAA-AAT-TAG--C-GTTTA-CAGTAA---GT--T--ATA--TGTTCAAAAG--A-AAAT-TTATGCT-GTACTTTTTATTAA-A-T-AG-----GAA-TT-CTACACA-TGAAACAAAC-GCA-CCA-TTTTTCTAATTCAAGAATCCTTGCGTTAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAACTTGATGCACAAATGCC-ACAA-----AAC--AGACAA-G--C-GGAGAGAat
gi|22 : tgGACTTTTGCGA-GATGGGCTGACTTTT--A-----C
gi|3 : tacagGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGCCGAACTTG-GACCA--CGATAA---AA-T-----T-A-C-G--AGAC-T--GTT-CGT-T-C-A-ATCCAATA--TAC--------------GCA--A-TGAAC-GA--TGC--AAT-GTTACGA-AATATGTTCAA--TCGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAA-ACAT--AATAGC----ATCAGCA----G--TTCA-GG-AAAT-C------T-TTTT-CATAT--GATATGT-TTGCT-G-GCG-T------A--AAG-CG--TGAA-CATGTAGTTC-G--TA-CAGTGAAGTAT--T--AT---T-TTCAAAAGTTT-AAA--TTATGCT-GTACTTTTTA-TAACA-T-AG-----GAATTT---ACACATTGAAAC-AAC-GCACCTA-TTTTTCTAATTC-AGAATCC-TGCG-TAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-T-ATGCACAAATGCCAACAA-----AACATGAACAA-AGCC-GGAGAAA
gi|4 : tgGACTTTTGCGA-GATGGGCTGACTTT---A-----CAGTTTACGGCTGACTTG-GAC-A--CGA-AA-TGAA-T----AT-AGC-GTGAGACGT--TTT-CGT-T-C-ATATC-AATA--TACATTTGAATT--A-CGCG--A-TGAAACGGACTGC--AAT-A--AC-A-AG-ATGTTCAA-ATTGCC-TCAA-CGTGGTTTT--AA-GT-AT-ATTTCA-TA--TTTTAAAAT-CCATTTAA------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---GAT-------CTTAAGA--TGG--TTCA-GG-AAATGCGCCA-GCCGTTA-CATAT--GATAAGTATTG-T-G-CCA-T------ACAAAG-CGAGTGTA-CATGTAGTTCCG--TACCAGTGAAG-GT--T--ATA--T-TTCAGAAG--T-AAA--TTATGGT-G-ACTTTTT-TCAGCAGTAAG-----GAATTTTCCACATATT-AAACAAATTGCG-----TTTTTCTAAATC-AGAATCCATGCA-TATGAAATGTTCGAATCA-TCCTGTGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGTACAATTGCC-ACAAC----AAC--TGACAATA--CGGGAGAGAtagggcttccattaattgactgtttactatcc
gi|5 : t-ATTTCA-TA--TTTTAAAAT-CTATT-AC------------T----G---A-GGT---T--AA-G-AA-CT-GAG-ACA---ATTAGC----ATTAACA--TGG--TTCA-GG-AAATGCACCA-GC-GTTT-CAT-----ATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTG-CATGTAGTTC-G--TA-CAGTCAAG-----T--AAAT-T-TTCAAAAG--TGAAA--TTGTGGT-GTACTTTTTATTGATA--AAG-----GAATTC-CCACAAATTAAAACAAAC-GTA-CTATTTTTTCTAAATC-AGAATCCTTGCG-TAC-AAATGTTCAAATAA-TCTT-TGCAAAAGAATGGAA--ATGTAGATTCGCAAC-TGATG-ACAATTGCC-ACAA-----AAC--TGACAA-G--C-GGAGAAA
gi|6 : CCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTT-ACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AC-G---G-GATATGT--TTT-CGTGT-CCATATC-AATA--TACATC-GAATT--ACCGCG--ATTGAACCGA--TGC--AATGGT-ACGC-AG-ATGTC--A-ACTGTC-TCAACCGT--TATT--AA-AT-A--ATTTAT-TA--TTGTGAAAA-TCATG-AC------------CTATAG---C-GG----T--AC-GAAA-AT-GAG-ACATTTAATC------GTTAACC--CTGCCTTCA-GG-AAATGC-CTA-AC-GTTT-CATAT----TA--T-TTGTTGG-GCG-T------G--AAGCCTA-TGT----TGTA-TTC-G----CCAGTT-AT-GT--A--ATAATT-TTCAAAA-----AAA--TTAtggagtggcttccattaattaactggtcaactatcc
gi|7 : gGGCCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-CA------AT-A-CGG-GATATGT--TTT-CGTGTCC-ATATC-AATA--TACAT--GAATT--ACCGCGATA-TGAACCGA--TGC--AAT-GT-ACG--AG-ATG-TCAA-ACTGTC-TCAA-CGT--TATT--AA-AT-ATAATTTCATTA--TTTGAAAAT-CCATG-AC------------C----GTATA-GG----T--AACG-AA-AT-GAG-ACATT-AAC-------GTTAAC---TGC--TTCA-GG-AAATGCTCTA-AC-GTTT-CATAT----TAA-T-TTGTT-G-GCG-T---------AAG-CTA-TGT----T-TAGTTC-G--CA-CAGTT-AT-GTAAT--ATT--T-TTCAAAA
gi|8 : GACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGACTGACTTT-GAC-A--CGATTA-A-AA-T----AT-A-C-G-GAGGTGT--TTT-CGTGC-C-ATATC-AATA--TACAT--GAATTAAA-TGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAATATGGTC-TCAA-C-T--TTTTAAAA-ATAAT-ATTT-A-TA--ATCTTAAAT-CCATT-ATGGGGGAGGGGGGG----G---G-GG----TTAAA-G-AA-CT-GAG-TCA---ATTTTGC---ATCAGCATTTTG--CTCAGGG-AAATGCACCA-TC-GTTT-CAT-----ACAAAT-TTGCT-G-GCGTT------A--AAG-CGA-TGTAGCATGTAGTTaa
gi|9 : gGACTTTTGCGA-GATGAGCTGACTTTT--A-----CAGTTTACGACTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATGTC-AATATGTATAT--GAATT--A-CGCG--A-TAAACTGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-ACATG-AC------------T----G---ACGG----T--AC-G-AA-TT-GAG-ACAAT-AAC-------GCTAGCA--TGC--TTTA--G-AAATGCGCTA-GC-GTTT-CATGT----TAGGT-TTGat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCAAAATAATATTTATAATCATTGGGGGGGGGGGGGGGACAAGAGCTTAAAAAACAATTTCAGCATTCAAATGCACATC
Unaligned ( gi|20 ): AAACAAACAAACGGAGAAATGGGAGTGGCTTCCATTAATTAACTGGACAGTGGTTTACTATCC
Unaligned ( gi|21 ): TTGTTTTGCATGCATGAAAAGGTGTAGCCAGGTGCCTAG
Alignments
lowQualScore : 22222222222222222 1111 55555555555555 1111111 1 111 222222222 11 22222 22222222222222222 1111 11 2222222222 111 11111 1 11 22222 111 1111
lowQualScore : 5 55 66666 2 2 33 666 2 6666 2 2 2 2 33 2 2 2 5 33 66 5555 33 2 33 33 2 2 33 5 5 2 2 33 0 55 4 4 66 4 99 4 44 99999999999999999 99999 2222 55 4 4 4 4 4 66666666666666 2 2222222 4 4 3 0 66 4 4 3 888 55 4 0 5 5 5 777777777 5 5 00 2 5 11111 55555555555555555 5 5555 55 8 0 0 11 3 0000000000 0 666 1 0 6 0 8 33333 1 8 6 8 8 0 8 6 11 0 8 6 1 88 88888 444 6666 8
lowQualScore : . .. ..... . . .. ... . .... . . . . .. . . . . .. .. .... .. . .. .. . . .. . . . . .. . .. . . .. . .. . .. ................. ..... .... .. . . . . . .............. . ....... . . . . .. . . . ... .. . . . . . ......... . . .. . . ..... ................. . .... .. . . . .. . .......... . ... . . . . . ..... . . . . . . . . .. . . . . .. ..... ... .... .
lowQualScore : 3 99 22222 7 7 77 000 9 1111 9 9 9 9 77 7 7 7 7 77 33 9999 77 7 77 77 7 7 11 3 3 7 7 99 3 00 0 0 22 0 55 0 66 44444444444444444 99999 5555 55 0 0 0 0 0 66666666666666 8 9999999 0 0 0 9 33 4 4 6 333 77 4 2 0 0 0 111111111 0 0 11 5 7 00000 00000000000000000 7 2222 88 0 8 8 66 2 4444444444 8 222 4 8 4 8 0 66666 4 0 0 0 0 8 0 0 00 8 0 4 4 88 00000 222 0000 0
consensus : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------ATTAGCA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
Reference ( family-2395 ) : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------ATTAGCA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
gi|1 : GACTTTTGCGA-GATGGGCTGACTTTT--AGTACACGTTTTACG-CTGACTTG--AC-A--CGATCAAT-GA-T----AT-A-C-G-GAGACGTGTTTT-CGTGT-C-ATACT-CATA--TACAT--AAATT--A-CGCG--A-T-AATAGA--TGTCAAAT-AT-ACTAGAG-GT-TTCAACATTGCCATCAA-CGT--TTTT--AATAT-AT--TTTCA-TAA-TTTTAAAAAACCATT-AA------------T----G---A-GG----T--AA-G-AAACT-GAG-ACA---A-T-------AT-AGCA--TGGGATTCA-GGGAAATGCGCCAAGC-GTTAACATAT--GAAAGGT-TTGCT-G-CCG-TTA----A--AAG-CGA-TGTA-CATG-AATTC-G--TAC-AGTCAAG-CTA-TCGATA--T-TCCAGAAG--T-GAAACTTATGGTAGTACTT---ATTCACA-TAAGCTAATGAATAT-C-ACATATTAAAACAAAT-GTG-CTG-TTTTTCTAGATC-AGAAACCTTGCA-TAT-AAATG-TCGAATCATTCCTATGCAAAATATAGGAATGATA-AGCTTCACAAA-CGATGTACAATTGGC--CAATGAACAAC--GGACAA-A--C-GGAGAAA
gi|10 : tgGACTTTTGCGA-GATGGGCTGACTTTTTTA-----AAGTTTACGGCTGACTTA-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGGCGT--TTT-CGTGT-C-ATATC-AATC--TACAT--GATTT--A-CGCG--A-TGAACGCA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTATC-TGAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-CCATG-AC------------T----G---AGGG----T--AT-G-AA-AG-GAG---------------------GCA--TGC--ATCA-GG-AAATGC
gi|11 : ctgCTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GATATGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--Tttttg
gi|12 : ttgtcatcatatttgtatctatgggacaagattcattaggtgtccgtccactggcGACTTTTACGA-GATGGGCTGACTTTT--A-----CAGGTTACGACTGACTCG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-AAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-ATGG-AG-GTGTTCAA-ATTTTC-TCTG-CGT--TCTT--AA-AT-a
gi|13 : gGACTTTTGCGA-GATAGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-TTAGTAT-A-C-G-GAGATGT--TTT-CGTGT-C-ATATC-AGTA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-AT----G-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--
gi|14 : TTTT--A-----CAGGTAACGGTTTGTTTT-GAC-AAACGCTTT-T----T----AT-A-C-G-GAAGCCT--TTG-TGTGG-C-ATATA-TGTA--TATAT--GAATT--G-GGTA--T-TATACCGA--TGC--AGT-GT-ACGG-CA-GTATTCAG-GTTGCC-CAAA-C
gi|15 : GACGTTTGCGA-GGTGAACGGACTTT---A-----CAGTTAAAGGGTGACTCT-GAC-A--CGAGCA-C-AA-T----AC-A-C-G-GAAACAT--TGT-AGTGA-C-Aa
gi|16 : taataatataaaaggctgtttattaGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTCAACGACTGACTTG-GAC-A--actgtgtaccctgatttac
gi|17 : gCGT--TTT-CGTGT-C-ATAGC-AATA--TACCT--GAAGT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--TCTtttaaacctacgtattgtatggaagctcgttatcgttaaattatatatccaaatgctagta
gi|19 : TA--TACAT--GAAAT--A-AGTG--A-CAAACCAA--TGT--TAT-GT-ACAG-AA-TTGCACAA-GTTGTC-CAAA-CAT--T
gi|2 : acatgGACTTTTGCGA-GATGGGCTGACTTTTT-A-----CAGTTTACGGC-GACTTGTGAC-A--CGATTAAT-AAAT----ATTA-C-G-GAGACGT--TTTTCGTGT-C-ATATCCAATA--TAC--------T----CACG--A-TGAACCGA--TGC--AAT-GT-ACGA-AGCATGTTCAA-ATCGTC-TC-A-CGT--TTTA--AA-AT-AT-ATTTCA-TATTTTTTAAAAT-CCATT-ACG-----------T----G---A-GGGGTTT--AA-G-AA-CTAGAGAACG---AATAATGGGCATCAGCAT-TGG--TTCA-GG-AAAT-C------T-TTTT-CATATTGGATATGT-TTGCT-GCGCT-TTTTTAGA--AAG-CGA-TGAA-AAT-TAG--C-GTTTA-CAGTAA---GT--T--ATA--TGTTCAAAAG--A-AAAT-TTATGCT-GTACTTTTTATTAA-A-T-AG-----GAA-TT-CTACACA-TGAAACAAAC-GCA-CCA-TTTTTCTAATTCAAGAATCCTTGCGTTAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAACTTGATGCACAAATGCC-ACAA-----AAC--AGACAA-G--C-GGAGAGAat
gi|22 : tgGACTTTTGCGA-GATGGGCTGACTTTT--A-----C
gi|3 : tacagGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGCCGAACTTG-GACCA--CGATAA---AA-T-----T-A-C-G--AGAC-T--GTT-CGT-T-C-A-ATCCAATA--TAC--------------GCA--A-TGAAC-GA--TGC--AAT-GTTACGA-AATATGTTCAA--TCGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAA-ACAT--AATAGC----ATCAGCA----G--TTCA-GG-AAAT-C------T-TTTT-CATAT--GATATGT-TTGCT-G-GCG-T------A--AAG-CG--TGAA-CATGTAGTTC-G--TA-CAGTGAAGTAT--T--AT---T-TTCAAAAGTTT-AAA--TTATGCT-GTACTTTTTA-TAACA-T-AG-----GAATTT---ACACATTGAAAC-AAC-GCACCTA-TTTTTCTAATTC-AGAATCC-TGCG-TAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-T-ATGCACAAATGCCAACAA-----AACATGAACAA-AGCC-GGAGAAA
gi|4 : tgGACTTTTGCGA-GATGGGCTGACTTT---A-----CAGTTTACGGCTGACTTG-GAC-A--CGA-AA-TGAA-T----AT-AGC-GTGAGACGT--TTT-CGT-T-C-ATATC-AATA--TACATTTGAATT--A-CGCG--A-TGAAACGGACTGC--AAT-A--AC-A-AG-ATGTTCAA-ATTGCC-TCAA-CGTGGTTTT--AA-GT-AT-ATTTCA-TA--TTTTAAAAT-CCATTTAA------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---GAT-------CTTAAGA--TGG--TTCA-GG-AAATGCGCCA-GCCGTTA-CATAT--GATAAGTATTG-T-G-CCA-T------ACAAAG-CGAGTGTA-CATGTAGTTCCG--TACCAGTGAAG-GT--T--ATA--T-TTCAGAAG--T-AAA--TTATGGT-G-ACTTTTT-TCAGCAGTAAG-----GAATTTTCCACATATT-AAACAAATTGCG-----TTTTTCTAAATC-AGAATCCATGCA-TATGAAATGTTCGAATCA-TCCTGTGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGTACAATTGCC-ACAAC----AAC--TGACAATA--CGGGAGAGAtagggcttccattaattgactgtttactatcc
gi|5 : t-ATTTCA-TA--TTTTAAAAT-CTATT-AC------------T----G---A-GGT---T--AA-G-AA-CT-GAG-ACA---ATTAGC----ATTAACA--TGG--TTCA-GG-AAATGCACCA-GC-GTTT-CAT-----ATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTG-CATGTAGTTC-G--TA-CAGTCAAG-----T--AAAT-T-TTCAAAAG--TGAAA--TTGTGGT-GTACTTTTTATTGATA--AAG-----GAATTC-CCACAAATTAAAACAAAC-GTA-CTATTTTTTCTAAATC-AGAATCCTTGCG-TAC-AAATGTTCAAATAA-TCTT-TGCAAAAGAATGGAA--ATGTAGATTCGCAAC-TGATG-ACAATTGCC-ACAA-----AAC--TGACAA-G--C-GGAGAAA
gi|6 : CCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTT-ACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AC-G---G-GATATGT--TTT-CGTGT-CCATATC-AATA--TACATC-GAATT--ACCGCG--ATTGAACCGA--TGC--AATGGT-ACGC-AG-ATGTC--A-ACTGTC-TCAACCGT--TATT--AA-AT-A--ATTTAT-TA--TTGTGAAAA-TCATG-AC------------CTATAG---C-GG----T--AC-GAAA-AT-GAG-ACATTTAATC------GTTAACC--CTGCCTTCA-GG-AAATGC-CTA-AC-GTTT-CATAT----TA--T-TTGTTGG-GCG-T------G--AAGCCTA-TGT----TGTA-TTC-G----CCAGTT-AT-GT--A--ATAATT-TTCAAAA-----AAA--TTAtggagtggcttccattaattaactggtcaactatcc
gi|7 : gGGCCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-CA------AT-A-CGG-GATATGT--TTT-CGTGTCC-ATATC-AATA--TACAT--GAATT--ACCGCGATA-TGAACCGA--TGC--AAT-GT-ACG--AG-ATG-TCAA-ACTGTC-TCAA-CGT--TATT--AA-AT-ATAATTTCATTA--TTTGAAAAT-CCATG-AC------------C----GTATA-GG----T--AACG-AA-AT-GAG-ACATT-AAC-------GTTAAC---TGC--TTCA-GG-AAATGCTCTA-AC-GTTT-CATAT----TAA-T-TTGTT-G-GCG-T---------AAG-CTA-TGT----T-TAGTTC-G--CA-CAGTT-AT-GTAAT--ATT--T-TTCAAAA
gi|8 : GACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGACTGACTTT-GAC-A--CGATTA-A-AA-T----AT-A-C-G-GAGGTGT--TTT-CGTGC-C-ATATC-AATA--TACAT--GAATTAAA-TGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAATATGGTC-TCAA-C-T--TTTTAAAA-ATAAT-ATTT-A-TA--ATCTTAAAT-CCATT-ATGGGGGAGGGGGGG----G---G-GG----TTAAA-G-AA-CT-GAG-TCA---ATTTTGC---ATCAGCATTTTG--CTCAGGG-AAATGCACCA-TC-GTTT-CAT-----ACAAAT-TTGCT-G-GCGTT------A--AAG-CGA-TGTAGCATGTAGTTaa
gi|9 : gGACTTTTGCGA-GATGAGCTGACTTTT--A-----CAGTTTACGACTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATGTC-AATATGTATAT--GAATT--A-CGCG--A-TAAACTGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-ACATG-AC------------T----G---ACGG----T--AC-G-AA-TT-GAG-ACAAT-AAC-------GCTAGCA--TGC--TTTA--G-AAATGCGCTA-GC-GTTT-CATGT----TAGGT-TTGat
blockSeqs : A TT . T C AA AT A TAGT T G G T . T C C C TG TT AAA AT T AC . G T A C T . C GG AA . A TA T TT . TT GGGGGAGGGGGGG TATA GGTT TA C A . A A AATAATGGGCA C CTGCC G . G G C . A TGG TG A G C T TTTTAGA C G AG G C TTTA TATGTAATAAT G TTT T . AT C GTAAG TCC C G T CCTA T A T T G . G . T C A AA C ATG AGC G
blockSeqs : A T . . . . TG . . . . . . . . . . C . C AC . . . . . . A T . . . . . . . A . . . G CTATA AG T . . . . . . TAATAGCA C TTTTG . . A G . . A G TG . . . . ACA . . A G . TAC TATGTAATATT . TG . . AT C TAG CT C G . CTAT T . A . . . . . . C A A . A TA .
blockSeqs : . . . . . . T . . . . . . . . . . . . . AC . . . . . . G . . . . . . . . T . . . T GT AC . . . . . . . TTTAATCG T TTGG . . T A . . A G AG . . . . A . . A G . TA GAAGTATTAT . A . . A T TAG CC T A . CCA A . T . . . . . . T T A . T G .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . G . . . . . . . . T . . . T T A . . . . . . . ATTTTGCA T TGC . . A A . . A . AG . . . . A . . A G . TA GAAGGTTATA . T . . T . AAG . A . . . A . . . . . . . . . T A . T G .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . A . . . . . . . . T . . . T T A . . . . . . . ATTAGCA T TGG . . G T . . A . AA . . . . G . . G G . CA CAAGTAAAT . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . G . . . . . . . . T . . . G T A . . . . . . . TTAACG T TGG . . . G . . G . GG . . . . A . . . . . C AAGTTATA .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . A . . . . . . . . A . . . G T A . . . . . . . ATAACG C TGC . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . G . . . . . . A . . . . . . . . . . . . T C C . . . . . . . GATC T TGC . . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . A . . . . . . . . . . . G T G . . . . . . . . . G . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . C . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . A . . . . . . A . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . A . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ***** T** ** ** A* ** ATTAGCG******* TGC**** G* *** A******** TA*** NAAGTAATAT******* ** AT TAG******* CC* CCA** ** A* *****
originalCons : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACA---AAT-------ATTAGCA--TGG--TTCA-GG-AAATGCGCCA-GC-GTTT-CATAT--GATAAGT-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TACCAGTNAAG-GT--T--ATA--T-TTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TAAG-----GAATTT-CCACACATTGAAACAAAC-GCG-CTA-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
finalCons : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCAT--AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-ACAATTAGCG-------TTAGCATGC----TTCA-GG-AAATGCGCCAG-C-GTTT-CATAT---ATAAGT-TTGCT-G-GCG-TA--------AAG-CGA-TGTA-CATGTAGTTC-GTA---CAGTNAAGTAATAT-------T-TTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACATAG-------GAATTTCC-ACACATTGAAACAAAC-GCGCCA--TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCCA-CAA-----AAC--GGACAA-A--C-GGAGAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCAAAATAATATTTATAATCATTGGGGGGGGGGGGGGGACAAGAGCTTAAAAAACAATTTCAGCATTCAAATGCACATC
Unaligned ( gi|20 ): AAACAAACAAACGGAGAAATGGGAGTGGCTTCCATTAATTAACTGGACAGTGGTTTACTATCC
Unaligned ( gi|21 ): TTGTTTTGCATGCATGAAAAGGTGTAGCCAGGTGCCTAG
Alignments
lowQualScore : 22222222222222222 222222222222222222 111 1111 1 3333 222222222 11 1 111 1111 11 11 11111111 1111 1 11 22222 111 1111
lowQualScore : 5 55 66666 2 2 33 666 2 6666 2 2 2 2 33 2 2 2 5 33 66 5555 33 2 33 33 2 2 33 5 5 2 2 33 0 55 4 4 66 4 99 4 44 99999999999999999 99999 8888 99 4 4 4 4 444444444444444444 4 111 4444 4 3 0 66 4 4 1111 888 4 0 5 5 5 777777777 5 5 00 2 5 77 5 6 1 000 5 5 5 5555 55 8 0 0 11 3 8 8 11 66666666 1 0 6 0 8 6666 1 8 6 8 8 0 8 6 11 0 8 6 1 88 88888 444 6666 8
lowQualScore : . .. ..... . . .. ... . .... . . . . .. . . . . .. .. .... .. . .. .. . . .. . . . . .. . .. . . .. . .. . .. ................. ..... .... .. . . . . .................. . ... .... . . . .. . . .... ... . . . . . ......... . . .. . . .. . . . ... . . . .... .. . . . .. . . . .. ........ . . . . . .... . . . . . . . . .. . . . . .. ..... ... .... .
lowQualScore : 3 99 22222 7 7 77 000 9 1111 9 9 9 9 77 7 7 7 7 77 33 9999 77 7 77 77 7 7 11 3 3 7 7 99 3 00 0 0 22 0 55 0 66 44444444444444444 99999 5555 55 0 0 0 0 666666666666666666 0 000 5555 0 0 9 33 4 4 1111 444 4 2 0 0 0 111111111 0 0 11 5 7 99 7 6 4 000 7 7 0 2222 88 0 8 8 66 2 0 0 00 22222222 4 8 4 8 0 2222 4 0 0 0 0 8 0 0 00 8 0 4 4 88 00000 222 0000 0
consensus : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-----ACA-A-TTAG-CGTTAG-CA---TG-C--TTCAGG-AAATGCGCCA-GC-GTTT-CATAT---ATAAG-T-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TAC-AGTNAAG-TA---AT-A-TTTTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TA-GG--AAT---TT-CCACACATTGAAACAAAC-GCGCC-A-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
Reference ( family-2395 ) : NGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAG-----ACA-A-TTAG-CGTTAG-CA---TG-C--TTCAGG-AAATGCGCCA-GC-GTTT-CATAT---ATAAG-T-TTGCT-G-GCG-T------A--AAG-CGA-TGTA-CATGTAGTTC-G--TAC-AGTNAAG-TA---AT-A-TTTTCAAAAG--T-AAA--TTATGGT-GTACTTTTTATTAACA-TA-GG--AAT---TT-CCACACATTGAAACAAAC-GCGCC-A-TTTTTCTAAATC-AGAATCCTTGCG-TAT-AAATGTTCGAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGCACAATTGCC-ACAA-----AAC--GGACAA-A--C-GGAGAAA
gi|1 : GACTTTTGCGA-GATGGGCTGACTTTT--AGTACACGTTTTACG-CTGACTTG--AC-A--CGATCAAT-GA-T----AT-A-C-G-GAGACGTGTTTT-CGTGT-C-ATACT-CATA--TACAT--AAATT--A-CGCG--A-T-AATAGA--TGTCAAAT-AT-ACTAGAG-GT-TTCAACATTGCCATCAA-CGT--TTTT--AATAT-AT--TTTCA-TAA-TTTTAAAAAACCATT-AA------------T----G---A-GG----T--AA-G-AAACT-GAG-----ACA-A-T-A-----TAG-CA---TG-GGATTCAGGGAAATGCGCCAAGC-GTTAACATAT---GAAAGGT-TTGCT-G-CCG-TTA----A--AAG-CGA-TGTA-CATG-AATTC-G--TAC-AGTCAAGCTATCGAT-A-TTC-CAGAAG--T-GAAACTTATGGTAGTACTT---ATTCACA-TA-AGCTAATGAATA-TCACATATTAAAACAAAT-GTGCT-G-TTTTTCTAGATC-AGAAACCTTGCA-TAT-AAATG-TCGAATCATTCCTATGCAAAATATAGGAATGATA-AGCTTCACAAA-CGATGTACAATTGGC--CAATGAACAAC--GGACAA-A--C-GGAGAAA
gi|10 : tgGACTTTTGCGA-GATGGGCTGACTTTTTTA-----AAGTTTACGGCTGACTTA-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGGCGT--TTT-CGTGT-C-ATATC-AATC--TACAT--GATTT--A-CGCG--A-TGAACGCA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTATC-TGAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-CCATG-AC------------T----G---AGGG----T--AT-G-AA-AG-GAG---------------------G-CA---TG-C--ATCAGG-AAATGC
gi|11 : ctgCTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GATATGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--Tttttg
gi|12 : ttgtcatcatatttgtatctatgggacaagattcattaggtgtccgtccactggcGACTTTTACGA-GATGGGCTGACTTTT--A-----CAGGTTACGACTGACTCG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-AAGACGT--TTT-CGTGT-C-ATATC-AATA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-ATGG-AG-GTGTTCAA-ATTTTC-TCTG-CGT--TCTT--AA-AT-a
gi|13 : gGACTTTTGCGA-GATAGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-AA-TTAGTAT-A-C-G-GAGATGT--TTT-CGTGT-C-ATATC-AGTA--TACAT--GAATT--A-CGTG--A-TGAACCGA--TGC--AAT-GT-AT----G-ATGTTCAA-ATTGTC-TCAA-CGT--TTTT--
gi|14 : TTTT--A-----CAGGTAACGGTTTGTTTT-GAC-AAACGCTTT-T----T----AT-A-C-G-GAAGCCT--TTG-TGTGG-C-ATATA-TGTA--TATAT--GAATT--G-GGTA--T-TATACCGA--TGC--AGT-GT-ACGG-CA-GTATTCAG-GTTGCC-CAAA-C
gi|15 : GACGTTTGCGA-GGTGAACGGACTTT---A-----CAGTTAAAGGGTGACTCT-GAC-A--CGAGCA-C-AA-T----AC-A-C-G-GAAACAT--TGT-AGTGA-C-Aa
gi|16 : taataatataaaaggctgtttattaGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTCAACGACTGACTTG-GAC-A--actgtgtaccctgatttac
gi|17 : gCGT--TTT-CGTGT-C-ATAGC-AATA--TACCT--GAAGT--A-CGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ACTGTC-TCAA-CGT--TCTtttaaacctacgtattgtatggaagctcgttatcgttaaattatatatccaaatgctagta
gi|19 : TA--TACAT--GAAAT--A-AGTG--A-CAAACCAA--TGT--TAT-GT-ACAG-AA-TTGCACAA-GTTGTC-CAAA-CAT--T
gi|2 : acatgGACTTTTGCGA-GATGGGCTGACTTTTT-A-----CAGTTTACGGC-GACTTGTGAC-A--CGATTAAT-AAAT----ATTA-C-G-GAGACGT--TTTTCGTGT-C-ATATCCAATA--TAC--------T----CACG--A-TGAACCGA--TGC--AAT-GT-ACGA-AGCATGTTCAA-ATCGTC-TC-A-CGT--TTTA--AA-AT-AT-ATTTCA-TATTTTTTAAAAT-CCATT-ACG-----------T----G---A-GGGGTTT--AA-G-AA-CTAGAGAACGAATA-A-TGGG-CATCAG-CAT--TG-G--TTCAGG-AAAT-C------T-TTTT-CATATTGGATATG-T-TTGCT-GCGCT-TTTTTAGA--AAG-CGA-TGAA-AAT-TAG--C-GTTTAC-AGT-AAG-TT---AT-A-TGTTCAAAAG--A-AAAT-TTATGCT-GTACTTTTTATTAA-A-TA-GG--AA----TT-CTACACA-TGAAACAAAC-GCACC-A-TTTTTCTAATTCAAGAATCCTTGCGTTAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAACTTGATGCACAAATGCC-ACAA-----AAC--AGACAA-G--C-GGAGAGAat
gi|22 : tgGACTTTTGCGA-GATGGGCTGACTTTT--A-----C
gi|3 : tacagGACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGCCGAACTTG-GACCA--CGATAA---AA-T-----T-A-C-G--AGAC-T--GTT-CGT-T-C-A-ATCCAATA--TAC--------------GCA--A-TGAAC-GA--TGC--AAT-GTTACGA-AATATGTTCAA--TCGTC-TCAA-CGT--TTTT--AA-AT-AT-ATTTCA-TA--TTTTAAAAT-CCATT-AC------------T----G---A-GG----T--AA-G-AA-CT-GAA-----ACATA-ATAG-CATCAG-CA----G----TTCAGG-AAAT-C------T-TTTT-CATATG--ATATG-T-TTGCT-G-GCG-T------A--AAG-CG--TGAA-CATGTAGTTC-G--TAC-AGTGAAG-TA---TT-A-TTTTCAAAAGTTT-AAA--TTATGCT-GTACTTTTTA-TAACA-TA-GG--AAT---TT---ACACATTGAAAC-AAC-GCACCTA-TTTTTCTAATTC-AGAATCC-TGCG-TAT-AAATGTTCAAATCA-TCCT-TGCAAAATATAGGAA--ATGTAGCTTCACAAC-T-ATGCACAAATGCCAACAA-----AACATGAACAA-AGCC-GGAGAAA
gi|4 : tgGACTTTTGCGA-GATGGGCTGACTTT---A-----CAGTTTACGGCTGACTTG-GAC-A--CGA-AA-TGAA-T----AT-AGC-GTGAGACGT--TTT-CGT-T-C-ATATC-AATA--TACATTTGAATT--A-CGCG--A-TGAAACGGACTGC--AAT-A--AC-A-AG-ATGTTCAA-ATTGCC-TCAA-CGTGGTTTT--AA-GT-AT-ATTTCA-TA--TTTTAAAAT-CCATTTAA------------T----G---A-GG----T--AA-G-AA-CT-GAG-----ACAGA-TC-----TTAA-GA---TG-G--TTCAGG-AAATGCGCCA-GCCGTTA-CATATG--ATAAG-TATTG-T-G-CCA-T------ACAAAG-CGAGTGTA-CATGTAGTTCCG--TACCAGTGAAGGTT---AT-A-TTT-CAGAAG--T-AAA--TTATGGT-G-ACTTTTT-TCAGCAGTAAGG--AAT---TTTCCACATATT-AAACAAATTGCG-----TTTTTCTAAATC-AGAATCCATGCA-TATGAAATGTTCGAATCA-TCCTGTGCAAAATATAGGAA--ATGTAGCTTCACAAC-TGATGTACAATTGCC-ACAAC----AAC--TGACAATA--CGGGAGAGAtagggcttccattaattgactgtttactatcc
gi|5 : t-ATTTCA-TA--TTTTAAAAT-CTATT-AC------------T----G---A-GG----TT-AA-G-AA-CT-GAG-----ACA-A-TTAG-CATTAA-CA---TG-G--TTCAGG-AAATGCACCA-GC-GTTT-CATAT-----AAG-T-TTGCT-G-GCG-T------A--AAG-CGA-TGTG-CATGTAGTTC-G--TAC-AGTCAAG-TA---A--A-TTTTCAAAAG--TGAAA--TTGTGGT-GTACTTTTTATTGATA-AA-GG--AAT---TC-CCACAAATTAAAACAAAC-GTACT-ATTTTTTCTAAATC-AGAATCCTTGCG-TAC-AAATGTTCAAATAA-TCTT-TGCAAAAGAATGGAA--ATGTAGATTCGCAAC-TGATG-ACAATTGCC-ACAA-----AAC--TGACAA-G--C-GGAGAAA
gi|6 : CCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTT-ACGGCTGACTTG-GAC-A--CGATCA-T-AA-T----AC-G---G-GATATGT--TTT-CGTGT-CCATATC-AATA--TACATC-GAATT--ACCGCG--ATTGAACCGA--TGC--AATGGT-ACGC-AG-ATGTC--A-ACTGTC-TCAACCGT--TATT--AA-AT-A--ATTTAT-TA--TTGTGAAAA-TCATG-AC------------CTATAG---C-GG----T--AC-GAAA-AT-GAG-----ACA-T-TTAATCGTTAACCC---TGCC--TTCAGG-AAATGC-CTA-AC-GTTT-CATAT----TA---T-TTGTTGG-GCG-T------G--AAGCCTA-TGT----TGTA-TTC-G--C-C-AGTTATG-TA---ATAA-TTTTCAAAA-----AAA--TTAtggagtggcttccattaattaactggtcaactatcc
gi|7 : gGGCCTTTGCGAAGATGGGCTGACTTTT--A-----CAGTTTACGGCTGACTTG-GAC-A--CGATCA-T-CA------AT-A-CGG-GATATGT--TTT-CGTGTCC-ATATC-AATA--TACAT--GAATT--ACCGCGATA-TGAACCGA--TGC--AAT-GT-ACG--AG-ATG-TCAA-ACTGTC-TCAA-CGT--TATT--AA-AT-ATAATTTCATTA--TTTGAAAAT-CCATG-AC------------C----GTATA-GG----T--AACG-AA-AT-GAG-----AC--A-TTAA-CGTTAA-C----TG-C--TTCAGG-AAATGCTCTA-AC-GTTT-CATAT----TAA--T-TTGTT-G-GCG-T---------AAG-CTA-TGT----T-TAGTTC-G--CAC-AGTTATG-TA---AT-ATTTTTCAAAA
gi|8 : GACTTTTGCGA-GATGGGCTGACTTTT--A-----CAGTTTACGACTGACTTT-GAC-A--CGATTA-A-AA-T----AT-A-C-G-GAGGTGT--TTT-CGTGC-C-ATATC-AATA--TACAT--GAATTAAA-TGCG--A-TGAACCGA--TGC--AAT-GT-ACGA-AG-ATGTTCAATATGGTC-TCAA-C-T--TTTTAAAA-ATAAT-ATTT-A-TA--ATCTTAAAT-CCATT-ATGGGGGAGGGGGGG----G---G-GG----TTAAA-G-AA-CT-GAG-----TCA-ATTTTG-CATCAG-CATTTTG-C--TCAGGG-AAATGCACCA-TC-GTTT-C--AT---ACAAA-T-TTGCT-G-GCGTT------A--AAG-CGA-TGTAGCATGTAGTTaa
gi|9 : gGACTTTTGCGA-GATGAGCTGACTTTT--A-----CAGTTTACGACTGACTTG-GAC-A--CGATCA-T-AA-T----AT-A-C-G-GAGACGT--TTT-CGTGT-C-ATGTC-AATATGTATAT--GAATT--A-CGCG--A-TAAACTGA--TGC--AAT-GT-ACGA-AG-ATGTTCAA-ATTGTC-TCAA-CGT--TCTT--AA-AT-AA-ATTTCA-TA--TTTGAAAAT-ACATG-AC------------T----G---ACGG----T--AC-G-AA-TT-GAG-----ACA-A--TAA-CGCTAG-CA---TG-C--TTTA-G-AAATGCGCTA-GC-GTTT-CATGT----TAGG-T-TTGat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCAAAATAATATTTATAATCATTGGGGGGGGGGGGGGGACAAGAGCTTAAAAAACAATTTCAGCATTCAAATGCACATC
Unaligned ( gi|20 ): AAACAAACAAACGGAGAAATGGGAGTGGCTTCCATTAATTAACTGGACAGTGGTTTACTATCC
Unaligned ( gi|21 ): TTGTTTTGCATGCATGAAAAGGTGTAGCCAGGTGCCTAG