lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111111111 222222222222222222222222222222222222222222222222222222
lowQualScore : 222222 555555555555 111 33 11 44444444444444444444444444444444444444444444444444444444444 2222222 44444 1 222222 1 3333333333333333 1111 555555555555555 2222 11 2 111 1 11 22 1 1 1 1 88888888888888888888 1 4444 5555555555555555555555 111 1 11 111 333 11111 1 11 222 2222 22 111 11111111 11 00000000000 22222222 222222 111 22222 2222 1 1111 2 1 3333333 33 11 999999999999999999999999999 333333 11 444444444 11 2222222222222222 6666666666666666666 11 222 333 111 222222 11 11 11111 2222 1 444444444444444444444444444444 44444444 33333333 11 8888888888888888888888888888888888888888888888888888888888888 111111 1111 111 11111 333333333333333333333333333333333333333333333333333333 2 4444444444 11111 1111 2 111 2222 222 555555555555555555 111111 1 11 2 222 111 11 111 66666666 111 3
lowQualScore : 222222 666666666666 999 44 11 55555555555555555555555555555555555555555555555555555555555 2222222 66666 0 000000 0 6666666666666666 2 8888 000000000000000 1111 44 0 777 0 33 33 0 0 0 0 55555555555555555555 0 1111 8 5555555555555555555555 999 6 99 888 999 333 55555 6 11 222 8 8 8 8 8 8888 5 8 77 444 99999999 33 22222222222 99 1 33333333 8 2 555555 111 33333 6 6 0 8 2222 0 2222 8 8 8 4 0 3 8 6 2222222 22 0 11 444444444444444444444444444 666666 6 55 000000000 00 1 7 8888888888888888 7777777777777777777 5 11 222 111 111 000000 33 33 22222 3333 5 9 99 444444444444444444444444444444 8 00000000 99999999 9 8 88 11 8888888888888888888888888888888888888888888888888888888888888 666 1 9 333333 6 6 99 1111 000 5 5 0 5 5 44444 555555555555555555555555555555555555555555555555555555 5 8 66 77 5 5 5 5555555555 77 5 44444 8888 6 4 6 3 99 666 6 9999 88 2 222 777777777777777777 222222 999 6 7 22 9 9 77 5 555 000 00 66 0 8 5 5 999 5 5 5 0 00000000 8 66 4 555 4 4 66 9999 66 88 6
lowQualScore : ...... ............ ... .. .. ........................................................... ....... ..... . ...... . ................ . .... ............... .... .. . ... . .. .. . . . . .................... . .... . ...................... ... . .. ... ... ... ..... . .. ... . . . . . .... . . .. ... ........ .. ........... .. . ........ . . ...... ... ..... . . . . .... . .... . . . . . . . . ....... .. . .. ........................... ...... . .. ......... .. . . ................ ................... . .. ... ... ... ...... .. .. ..... .... . . .. .............................. . ........ ........ . . .. .. ............................................................. ... . . ...... . . .. .... ... . . . . . ..... ...................................................... . . .. .. . . . .......... .. . ..... .... . . . . .. ... . .... .. . ... .................. ...... ... . . .. . . .. . ... ... .. .. . . . . ... . . . . ........ . .. . ... . . .. .... .. .. .
lowQualScore : 777777 333333333333 777 44 22 00000000000000000000000000000000000000000000000000000000000 0000000 55555 0 222222 0 0000000000000000 5 5555 000000000000000 2222 22 0 555 0 88 88 0 0 0 0 55555555555555555555 0 2222 0 6666666666666666666666 222 0 00 888 222 000 22222 0 00 000 0 0 0 0 0 0000 0 0 00 000 00000000 00 44444444444 44 4 22222222 0 8 000000 888 88888 7 7 3 0 2222 6 2222 0 0 0 0 8 8 0 0 2222222 88 8 00 222222222222222222222222222 777777 7 88 888888888 88 7 8 8888888888888888 3333333333333333333 0 88 555 222 000 888888 88 88 00000 7777 0 8 22 999999999999999999999999999999 2 00000000 22222222 6 0 88 00 3333333333333333333333333333333333333333333333333333333333333 555 7 3 777777 7 7 22 7777 000 7 7 1 7 7 33333 111111111111111111111111111111111111111111111111111111 7 4 00 99 7 7 7 6666666666 99 1 33333 3333 7 7 7 3 22 333 7 3333 33 5 555 888888888888888888 777777 444 0 0 66 6 7 99 7 777 000 44 99 2 4 0 0 666 0 0 0 5 66666666 9 11 4 222 4 0 11 4444 11 88 2
consensus : NNAGACTGATTCTA--C-C-GTAACAG--GG--AC---ATAAA--AAATGGAAAA-CACAG-GAAAAAA---AATT-AA-TAAAACTAGTTGTT----TT-ATTCTGATAT-CATTTTNCG-T-C---AATCTT--TG-A-TATT-TG--GAA-CTTTCAAAATA-TGT-GAAAATTC--GGG-A-A--CACTGC--T-TTAT---CC---GGATA--GAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CT--CGCC-AC-AA-AAA-CG-TCATT---AT-GAGCAGCGT-AACGTT-ATAACATTGAC-GC--T--C--T-C-C--C--GGC-GTCC--GTT-ACG--TAG-GACA-C-TTTTT-CCGTAT---C-CGTAA--TTTTATCA---TG-T-T-TAGT-TAA-ATTA-G--CGCGCATT-CC-GTTGA---TGTTTTTT-GAC----TT-GTCATTGACGT-T-T-AT-ATTATTTAAATG-----GGA-TATA----G-AGCTTT--TCA----CTT-TG-GAAAAGTTT-GGATNAAATTATTT--C-ATTG-A-ATA-AAAGAGATAAAGCCG-TT-ACG-----T-AGGACACTCTCT--TAAAAANTCGGGGT-GA----------T---TTTTTTGCTAAT---T--AAC-AT--AGAT-ATCCA-GAAAATGCAC-GAATGTTATGCCAA---CGAA--C-TT-TTAGCATT---TACT-TT-AA-G--C-TGTATCAGGCAAGTC-GGAAAAAG-CAAA-GTAT---TG-CA--CT--CA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAG-AATCACG-TTT-A----G--ACGTTCATTTTTA---AAA-TGATTNA-T-NN-AAAAT-AAT-GAA--AGAGTCAACT-GTA--AT--GATA--A------ATGTTA-T-ATATTA-CAC-T--TATA---TG-TAT-GGAACCTTTAGNC-T-AG-TAAG-TC-GT--TTTTTCT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CAT--------------G-----------------AACGATNGTTTTCAAA------CGCT-TACAACCGATT--G-G-AAACTCATTT-------CN-TC--TATTT-----TT-N--CA-TTTTT-AACCTT--AAAAA-TTCAATG-TACGT-CTTTT-AAAAAGTT--AATTATT-T-TN--TA---A-A--AAATATTG---CC-GATA-TGTTAATTTATAAATGCAT-T--G-CTTGATCTCCAATAACA---TTC-GT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAAAACT-A--T--CGAAAAC-TGCAGA--A-TTTN--C-CCGTGT-CCG--C----CGTA--AC-GTAG-AATCAGTG
Reference ( gi|3 ) : TAAGACTGATTCTA--T-C-GTAACA---GG--ACC-TATAAG--AAATGGAAAA-TACAG-GAAAAAA---AACTAAA-TAAAACTGATTGTT----T--GT----ATAT-CATTTTAC--------AATCTT--TG-A-TATT-TACTGAA-CTTTCAAAATA-TGT-AAAACTTC--GGA-ACA--CACTGC--T-TTAT---C----GGATT--GAAAATATAA----TATTTT-GAAAA-ATGGT---AGAAA-CT--CGC--AC-AA-AAA-CG-TCA-----AT--AGCAGCGT-AGCGTT-ATAATATTGAC-GC--T--C--T---C--C--GGT-GTCC--ATT-ACG--TAG-AGCA-C-TTT---CCGTAT---C-CG-AA--TTTTATCA---TG-T-T-TAGT-TAA-ATTA----CGTGCATT-C--GTTGA---TGTTTTTT-GAC----TT-GTCATTGATGTCTTTGATGATTATTTAA-TG-----GGA-TGTA----G-AGCTTT--TCA----TTT-TG-GAAAAGTTT-G-ATAAAATTATTT--C-ATTG-A-ATA-AAA-AGATAAAGCCG-TT-ACG-----TGAGGA-ACTCTCT--TAAAACTTCGTAGT-GA----------TATCTTTTTTGCTAAT--AT--AAC-AT--AGAG-ATTC--GAAAATGCAC-AAATGTTATGCCAA---CAAA--C-TT-TGAGCATT---T--T-TT-AA-G----TATATCAGGCAAGTC-AGAAAA---CAAA-GTAT---TA-CA--CT--CA-T-T-AGAA-A-CAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCGC---ACATG-AATCACA-TT--A----A--ACATTTATTTTT----AAT-TGATTAA-T-AA-AAGAT-AAT-GAA--AGAGTCAACT-TTA--AT--GATA--A------AT-TTA-T-AT-TTA-CAC-C--TATA---TGATAT-TGAACTTTTAGGC-T-AG-TAAG-TC-GT--TTTTTCT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CAT--------------G-----------------AA--------------------CGCT-TACAACCAATT--G-G-ACACTCATTT-------CG-TC--TATTT-----TT-G--CA-TATTT-AACCCT--AAAAATTTCAATG-TA-GT-CTTTT-AAAAAGTG--AATTATT-T-TG--TA---AGA--AAATATTG---CT-GATA-TATTTATTAATAATTGCATAT--G-CTTGATCT-TAATAACA---TTT-GT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAAAACTCAGTT--CGAAAAC-TGCAGA--A-TTTT--C-CCGTGT-CCG--C----CGTA--AA-GTAGAAATCAGTG
gi|11 : AGACTGATTCTA--C-C-GTAACAG--GG--AC---ATAAA--AAATGGAGAA--ACAGAGAGAAAA---AATTGAACT--AGTTGCTTCTT----T--ATTCTGATGT-CATTTT
gi|20 : aatttcagccaggtttAGACTGATTCTA--C-C-GTAACAG--GG--AC---ATAAA--ACATttgaatataactagtgttcaa
gi|4 : taattttgattcGACTGATTCTA--C-G-GTAACA---GG--GAC--ATAAA--AAATGGAAAA--ACAG-AAAAAAA------TAAA----AACTAGTTG---------------ATAT-CATTTTTCG-------AATCTT--TG-A-TATT-T---GAA-CTTTCC---TAGTGT-AAAAAATC--AGG-A-A--CACTGC--T-TTAT---CC---GGATA--GAAAATATAA----TATTTTTAAAAA-ATGGT---AGAAA-CT--CGC--AC-AA-AAAACG-TCA-----TT--AGTATCGT-AACGTT-ATA---TTGAC-GC--T--C--CTC-C--C--GGC-GTCC--GTT-ACG--TAG-GACA-C-TTTT--CCGTAT---C-CG-AA--TTGTATCA---TG-T-T-TAGT-TAA-ATTA----CGTGCATT-CC-GTTGA---TATTTTTT-GAC----TT-GTCATTGATG---------ATTATTTAAATG-----GGA-TATA----G-AGCTTT--TCA----CTT-TG-TGAAAGTCT-G-AATAAATTATTT--T-ATTG-A-ATA-AAAGAGATAAAGCCG-GT-ACA-----T-AGGACACTCTCT--TAAAAAATCGGGAT-GA--------------TTTTTTGCTAAT--G---AAC-AT--AGAT-ATCCA-GAAAATGCAA-AAATGTTATGCCAA---CAAA--CATT-TTAGCATT---TACT-TTAAA-G----TGTATCAGGCAAGTC-GGAAAA---CAAA-TTAT---TG-CA--CT--CATT-T-AGAAGA-TAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCGC---ACTAG-AATCACG-T
gi|1 : gcGACTGATTTAA--C-C-GTAACA---GG--GAC--ATAAC--AA-TGGAAAA---CAG-GAAAAAA---A-------TAAAACTAGTAGTT----TT-ATTCTGATAT-CATTTT-CTCTCCG--AATCTTCATG-AATATTATATAGAAACTTTCAAAA-A-TGT-GAAAATTC--AGG-A-A--CAATGCATC-TTATATCC----GGAT----AGAATATAAATCTTATTTG-TAAAA-ATGGT---AGAAAACT--TGCC-AC-AA-AAC-CG-TCATTT--ATTAAGC-GC-T-GACGTTTATAAC--TGAC-GCGTC--C--T---CGGC--AGC-GTCG--TTT-ACGG-TAG-GACAAC-TTT---TCGTAT---C-CGTAA--TTTTATCAA--TG-TGT-TAGT-TGACATTA----CGTGCATT-CC-GTTGA---TGTTTTTT-GACGGCTTT-CTCATGGATGTGT------ACT-TTTAA-CATAGGTGGA-TATA----G-GGCTTTGTTCAATCTTTTGTG-GAAGAGTTT-GGATAAA-TTATTT--CAATTG-A-ATA-AAAGAGATAAG--CG-TT-ACGATTTTTGGGGA---CCTCT--TAAAATTTCGGGGTAGA--------------TTTTTTGCTAAA--ATTAAACGAT--AGAT-ATCC---AGAATGCAC-AAATGTTATG-CAGGTTCAAAGCT-TT-TTAGTATTCTAC--T-TT-AACGTTCTTTTTTC-GGCAAGT--GGAAAAAGGCAAC-ATAG---TA-TA--TTAGCA-T-T-
gi|8 : GACTGATTCTGACC-C-GTAACA---AGCGAC---ATAA---AAATGGAAAAACACAA-GGAAAAA---AAT--AA-TAAAATATATTGTTCTTAT--ATTCTGATAT-CATTTCGA--------ACTCTT--TG-ACTATT-TG--AAA-CTTTCAAATT--TGT-AAAAATTCAAGGA-ACA-----TGC--T-TTAT---C----CGAAAAAGAAAAGATAA----TATTTT-GAAAAGATGATTAAAAAAA-CTGCCGT--ACAAA-AAA-CC-TCAG----GTGGAGTAACG---ACGTT-ATA--ACTGAC-GC--T--CCTC---C--C--AGC-GTCCCGGTTAACGATTAG-GACA-CTTTT---CCGCATATAC-CG-AATGTTCTATCAGCCTG-T-TCTAGTATCA-ATTACGATCGCGCATTCC--GTTGA---TTTTTTAA-AAC----TTCGTCATTGA------TGATCAGTCTTAAC-TG-----GCG-TGGA------AGCTTT--TCA----CTT-TGTGAAAAccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|2 : tGATTCTA--CGCAGTAACAACGGG--ACAGTA-AAGTAAAATG-AAAG-CACA---AAAAGAGTGAACCTAG-TATTTCT--TTATT----CTAGT----ATATTCATTTTATGATATCGAAATCTT--TCCA-CATA-TG-TGAA-CCGTCAAAATA-TGTCGAAAGTAA--GGAGAGAGTCACTGC--TGTTAT---CTTCCGGATA--GAAAATATAA----TATTGT-AAAAATATGGT---AGAAA-CT--CACTAAC-AACAAA-CGATCATTGATAC--AGC-GCGTGATCGTT-ATAAT---GAC-GT--C--C--TGCACA-C--GGCAGTCC--GTT-ACG--TAGGACCA-C-TTTGT-CCGTAT---CGCGTAA--TTTTATCA---TG-T-T-TA-T-TAA-ATTA----C-CGCATT-C--CTTTG---TGTTTTTTTGAC----CT-GTCAATGA----------GATTATTTAAATG-----GGAATATAATGAG-AGCTTT---CA----TTT-TG-GTGAAGTTT-GGATAGA-TTATTTATC-ATTG-ATAGA-AAAGAGATAAAGCCG-TTGACG-----TAAGGACACTC-CT--TAAAAAT-CGGGGT-GA----------T-----TTTTGCTAAT---T--AAC-ATTAAGAT-ATCCAGGAAAATGCAC-AAATGTT-TGCCCA----AAA--C-TTCTTAGTATT---TACTGTT-AA-AAGT-TATAT--GGCAAGTC-GGGAAAAG-CAAAAGTAT---TG-CATACT--CA-T-TTAGAA-AATAATTATTTTT-CAAAAGCCTGTTTTT--AA-TAGTCGCC--ACTAG-ATTCACG-TTTTA----G--ACATTCATTTTT----AAAATGATTTA-TTAA-AAAATGAAT-GAACAAGGATCAACTGTTACAGT--TGTA--AT-----ATGTCA-T-AT-T-A-CAC-TGTTA-A---TG-TAT-GGCCCTTTTAAACCT-AG-TAAG-TC-GT--TTTTT-T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CAT--------------G-----------------AACGATGGTTTTTTCAACT---CGCT-TAC-ACCATTT--G-G-AAACTCATTT-------CACTCAATTTTT-----TT-GTTCATTTTTT-AACCTT--AAAAATTCAAGTG-TATGT-CTTTTAAAAAAGTT--AATTATT-T-TT--TATGTATA--TAATATTGGGCCC-GAGA-TGTTAATTTACAAATGCATTT--GTTTTGATCT-CTATATCA---TTC-GT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAAATCTC---T--CGAAAACATGCAAAGTA-TTTA--C-CCGTGT-CAGGCC----CGTA--AACGTCAGAATCAGtgtggcataa
gi|9 : ATTGACCGC--TTCC--T---C--CCGAGC-GCCC--GTTGACG--TAG-GACT-T-TTTTTTCCGTAT---T-CG-AA--TTTTATCA---TGTT-T-TAGT-GAA-ATTAAG--CTTGCATT-CCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCTATAAT-ATTG-TAAA-TG-----GGA-TATA----GAAGCTTT--TCA-----TT-TG-TGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAG-AGAT-AAGCCGTTT-ACG-----T-AGGACACTCTCT--TAAAAAATCGGGGT-GATTTTTTTTTTTTTTTTTTTTGCTAAT--TC--AAC-AT--AGAT-AATCCAGAAAATGCAC--CATG-TATGTCAA---CGAC--G-TT-TTAGCATT---T--
gi|5 : gT-TT-GAAAAGTTT-G-GGTAAATTACTT--C-ATTG-A-ATA-AAG-AGATAG-GTCA-TTCACG-----CTAGGACATTCTCTGACAAAA--TCGGGGT-G---------------CTTTTTATTAATTAAC--AAC-ATT-AGACTATCCA-GAAAATGCACCGAATGT-AT--------------C-TTATTAGCATTCAGT--C-TA-AA-G----TGTATCAGGCGAGTTTGGAAAA---CATG-GTATATGCAGCA--CT--CA-TCT-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA----ACTAG-AATCATGTTT--A----T--ATATCAATTTTTA---AAA-TGATT--------AAGTT-AA---------AGTCAACT-GTA--AT--TGTATTACCGGGTATGTTA-T-A--TTA-CACTC--TA-A---TCA-AT-GGGACCTTTAAGC-C-TT-TAAG-TC-GT--TTCTTCTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CAT--------------GAATGAATAAGTTTTTCAAA--------------------CGCT-TAC-ACAGATT--G-G-AAACTCATTT-------CC-TC--TATTT-----TT-G--CA-T-TTT-AACGTT--TAACA-CTCAATGTTACGT-CTTTC-AAAAA--------TATC-G-TA--T---------AAATATTG---C
gi|17 : TCGGGGT-GA----------T----TTTTTGCTAAT---T--AAC-AT--AGAT-ATCCA-AAAAATGCAC-GAATGTTGTGTCAA---CGAA--CGTT-TTAGCATT---gacgtg
gi|7 : aaaTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAG-AATCACGTTT--A----G--GCGTTCATTTTTA---AAA-TGATTAATT-AT-AAAAT-AAT-GAA--AGAGTCAATT-GTA--AT--GAT---G------AT-TTATT-ATATTA-CAC-T--T------TAATGTATGACATTTCAGCC-T-AG-TAAG-TC-GT--TATT--T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAATGATAGTTTTCA-----------------AA--------------------CGCT-TCCAACCGATT--G-G-AAAGTCATTTTCCTG--TG-TT--TCCTT-----TT-T--CA-TTTTA-AACCTT--AAAAAATTCAATG-TACTT-CTTTT-TAAAAGTG--AATTATT-T-T---TA---TGAATAAATATTG---CC-AATA-TGTTAATTTATAAATGCAT-T--G-CTTACTCTCTAATAATA---TTC-GT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAAAAC----TT--CGAAAAC-TGCAGA--A-TTTC--C-CCGTGT-CTG--C----CGTA--AA-GTAG-AATCAGTG
gi|6 : tcatTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCGC---ACTAG-AA-CACG-TTT-A----G--GCGTTCATTTTTTTTAAAA-TGATTAA-T-TATAAAAT-AAT-GAA--AGAGTCAATT-GTA--AT--GATG--A-------T-TTA-TTATATTA-CAC-T--T-TA---TG-TA---GGACCTC-AGCC-TTAG-TAAG-TC-GT--TATTTCT-C---T-C---GTT-TACGAG-TT-TTCT-----CAT--------------A-----------------AATGAAGTTTCAAAA-------CGCT-TTCCAACGATT--GCG-A-AGTAATTT-------TC-TG--TATTTCCTTTTT-T--CA-TTTTT-AAACCTTAAAAAATTCCAATG-TA-CTTCTTTT-AAAA--TT--AATTATT-T-TTATTG---AAT--AAATATTG---CCCAAT--TGTTAATTA-TAACTGCAT-T--G-CTTACTTTCTAATAATA---TTTCGT--CCG-CATTT-T-AACGCC--GC-A-T-CCAAAAACT----T--CGAAAAC-TGCTGA--ATTTTT--C-CCGTGTCCCG--CCGTTCGTT--AA-GTAG-AATCAGTG
gi|1 : tcattTGTTTTT--AAATAGTCGTCGAAC-TGCAGTGCCG-TT--ATAGAATTACATTCATTTTT----AAA-TGATTTA-T-TT-AA-AT-AATTGAA--AGTGTCAACT-GTA--TTTGGAAA--T------AT-TTGGT-AT-TTAACAT-C--TTTACACTGTTAT-GGAGCCTTTAAGCCT-AGGTAAGGTC-GTGTTTTTTTT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCAT--------------G-----------------AAAACGCGATGTTTTCACCACACGCTGTACAACCGATTCTG-G-A-ACTCATTTTCAACACCA-TT--T-TTT-----TT-T--CA-TTTTTTAACCTT--AAAA--TTCAATG-TG-TC-CTTTT-AAAAAGCTCTAATTATTATATG--TA---ATA-----TATTG---CT-GAGAATGTTAATTTACAATTGCA-ATTGG-ATTAATCTCTAATATCA---TCTCGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAACATCTC---C--TGAAACC-TGCAGT--A-CTTTACCGCCGTGT-CCG--C----CGTA--AC-GTAG-AATCAGTG
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgtA---TG-TAT-CGAA--TTTAG-C-T-CG-TAAG-TCTGT--TTTT----C---T-CTCCGTT-CACGAA-TT-TTCA-----CAT--------------G-----------------AATGATCAGTTTCAAA------CGCT-TACAGC-GATT--G-A-A-ACCCATTT-------C--CC--TATTT-----TTTG--CA-T--TT-A-CCTT--AAA--CTTCAAAG-TACGT-CTTT--GAAAAGTGC-AATT-TT-C-TG--TA---T----AACTAT-----CC-GATA-TGTTAATTTATAAATGCAT-T--G-CTTGATCT-CTATAATAGATTTT-GT--C-AGCATTT-C-CACGCCA-GC-A-T-CCAAA--CGGAGTTGTCGGAAACCTGTAGA--A-TTTG--G-CCGTGT-CCG--T----GTTACTAA-GTAG-AATCAGTGt
gi|15 : ttaTCT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CAT--------------G-----------------AATGATAGTTTTCAAA------CGCC-TACAACAAATT--G-GAAAACTCGTTT-------CC-TC--TATTT-----Tta
gi|12 : TGCAT-T--G-CTTGATCT-C--TAACA---TTC-GTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAAAACTTA-----CGAAAAC-T-----------------CTGTGT-CCG--C----CGTA--AC-GTAG-AATCAGTGgc
gi|13 : acaGCAT-T--G-CTTGATCTGTAAGAACA---TTC-GT--CCAGCATTT-C-AACGCCA-GC-T-C-CCCAAAAC--A--T--CGAAAAC-TGCAGA--A-TTTG--C-CCGTGT-CCt
gi|14 : TC-GT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAAAACT----T--CGAAAAC-TGCAGA--A-TTTG--C-CCGTGG-CCG--C----CGTA--AC-GTAG-AATCAGTGa
gi|19 : TC--CGAAAAC-TGCAGT--A-TTTA--C-CCGTGT-ACG--C----CGTA--AC-GTAG-AATCAGTta
gi|21 : tcGTGT-CCG--C----CGTA--AC-GTAG-AATCAGTG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CTTTGATCGTTTCTTGCCCTCTCAGCTGTCGGTTTACATGAACTGAGTAAAAACTTCAAACCGCATTTACAGAAAGTCATTTC
Unaligned ( gi|18 ): TACGTCTTAAAAAAATTCTGATAAATATTCTCGATGTGTTAATTCATAAATGCGTGCTTGATCTC
Alignments
lowQualScore : 111 33333333 11111111 111 5555555555 11 1 3333333 1111 111 111 1111 1 111 22222222 44444444 11111 2222 1111 222222 1 1 22222 2 111 4444 111 1111 66666666666 111 111111 111 111 2 1 2222 333333333333333333 111 1111 11 11111 11 1 1 333333 22 11111 333 11111 111 111 1111 111 11111 11111 111 44444444444444444 22222222 11 11111 22222222222222 111 111111111111111111111111 1111 1 111 222222 33333333 111 11 111 11 2222 11111
lowQualScore : 77 5 5 77 5 5 5 000 6 9 77 88888888 6 99 88888888 3 3 1 111 7777777777 8 11 6 8 8 2222222 66 0 8 8 8 8 7777 5 444 8 8 444 8 0 7777 6 8 444 8 3 99999999 8 8 55555555 22 22222 8 7777 6 6666 6 111111 6 99 3 6 99 3 44444 6 6 3 99 6 111 6 6 6 6 6 5555 33 6 111 77 4444 99 77777777777 99 6 99 111 6 999999 99 222 000 11 5 8 99 6 6 6 1 6 3 0000 888 2 6 999999999999999999 1 77 111 5 2222 77 555 5 22 0 44444 11 7 1 5 0 8 999999 1 33 8 88 66666 8 111 22222 111 77 555 6 6 4444 0 111 3 1 00000 33333 6 99 111 2 33333333333333333 7 99 55555555 5 666 77 33 666 5 5 5 5 66 999 4 777 4 4 3 4 4 2 11111 88888888888888 66 4 4 4 4 4 333 4 4 999999999999999999999999 0000 1 5 1 77 555 5 5 1 5 5 111111 88 2 777 77777777 333 55 0 999 4 4 66 333 4 66 4 4 88 4 4 4 777 7777 4 4 4 55 4 2 55 3 55 00000 4 777 4 4
lowQualScore : .. . . .. . . . ... . . .. ........ . .. ........ . . . ... .......... . .. . . . ....... .. . . . . . .... . ... . . ... . . .... . . ... . . ........ . . ........ .. ..... . .... . .... . ...... . .. . . .. . ..... . . . .. . ... . . . . . .... .. . ... .. .... .. ........... .. . .. ... . ...... .. ... ... .. . . .. . . . . . . .... ... . . .................. . .. ... . .... .. ... . .. . ..... .. . . . . . ...... . .. . .. ..... . ... ..... ... .. ... . . .... . ... . . ..... ..... . .. ... . ................. . .. ........ . ... .. .. ... . . . . .. ... . ... . . . . . . ..... .............. .. . . . . . ... . . ........................ .... . . . .. ... . . . . . ...... .. . ... ........ ... .. . ... . . .. ... . .. . . .. . . . ... .... . . . .. . . .. . .. ..... . ... . .
lowQualScore : 99 7 7 99 7 7 7 000 7 3 77 55555555 7 22 77777777 2 2 0 777 9999999999 0 00 0 0 0 6666666 44 8 0 0 0 0 0000 0 000 0 0 000 0 8 0000 0 0 000 0 2 22222222 0 0 22222222 22 66666 0 3333 7 0000 7 222222 7 22 3 7 22 3 55555 7 7 7 22 7 777 7 7 7 7 7 8888 22 7 777 77 2222 22 22222222222 22 7 88 777 7 222222 22 888 000 99 7 9 22 7 7 7 7 7 3 8888 777 5 6 777777777777777777 4 99 666 7 1111 99 999 7 00 1 33333 99 1 4 7 8 0 666666 4 88 0 44 00000 0 222 00000 000 99 777 7 7 2222 7 777 5 0 33333 22222 7 22 777 5 33333333333333333 3 22 11111111 7 111 99 66 999 7 7 0 0 99 222 4 888 4 4 6 4 4 2 11111 00000000000000 11 4 4 4 6 4 999 4 4 444444444444444444444444 6666 0 7 4 44 000 7 0 4 0 0 222222 22 1 999 22222222 888 99 5 888 4 4 55 888 4 11 4 4 77 4 4 4 888 8888 0 0 0 55 0 4 55 6 55 00000 0 000 0 0
consensus : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGG-AAAACACAG-GAAAAAAAA-TAA-TAAAAC-TA--GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT-T---G--GAACTTTCAAAATA-TGT-AAAAATTC-GGGA-A----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AG-AAACTCGC-C--A-C-AA-AAACG-TCA-TT-AT--AGCAGCG-TGA-CG-TTATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTTT-C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGCGCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTGATG--T---AT-ATTA--TT-TAA-ATG---GGA-TATA----G-AGCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCG-TT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G--NTGTATCAGGCAAGTC-GGAAAA-GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAA-TTN-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-TATATT--ACAC--T--TA-A-TG-T-ATGGAACCTTT--A-GCC-TAG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-ATAG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT-------C-CTCTA-----T----TTT----TTCA-TTTTT-AACCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGT-T--AATTA-TTTT--NTG---A-A-AAATATTG---CCGATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-TCGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AACT----TCGAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Reference ( family-231 ) : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGG-AAAACACAG-GAAAAAAAATTAA-TAAAAC-TA--GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT-T---G--GAACTTTCAAAATA-TGT-GAAAATTC-GGGA-A----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AG-AAACTCGC-C--A-C-AA-AAACG-TCA-TT-ATG-AGCAGCG-TAA-CG-TTATAACATTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTTT-C-CGTAT-C-CGTAA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA-G--CGCGCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTGACGTTT---AT-ATTA--TT-TAA-ATG---GGA-TATA----G-AGCTT--TTCA--CTT---TGGAAAAGTTTGG-ATNAAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCG-TT-ACG----T-A-GGACACTCTCTTAAAAANTCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G--CTGTATCAGGCAAGTC-GGAAAAAGCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTNA-TNN-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATGATA--A------ATGTTA-TATATT--ACAC--T--TATA-TG-T-ATGGAACCTTT--A-GNC-TAG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-ATNG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT-------C-NTCTA-----T----TTT----TNCA-TTTTT-AACCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGT-T--AATTA-TTTT--NTA---A-A-AAATATTG---CCGATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCCAATAACA---T-TCGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AACT-A--TCGAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|1 : GACTGATTTAA--C-C-GTAACA--GG-GAC-A-TAAC---AA-TGG-AAAACA--G-GAAAAAAA------TAAAAC-TA--GT--AG---TTTTATTCTGATAT---CATTTTCTC---TCCGAA-TCTTCATGAA-TATTATATAG--AAACTTTCAAAA-A-TGT-GAAAATTC-AGGA-A----CAATGCATCT-TATATC---CG-GATAG--AATATAAATCTTATTTG-TAAAA-ATGGT---AGAAAACTTGC-C--A-C-AA-AACCG-TCATTT-ATT-A--AGCGCTGA-CGTTTATAAC--TGAC-GCGT--C-CTCGG-CA-GC-GTCG--TTT-ACGG--TAGGACAACTTTT----CGTAT-C-CGTAA--TTTTATCAA---TGTGT-T-AGT-TGACATTA----CGTGCATTCCGTT-GAT---GTTTTTT-GACGGCTTT-CTCATGGATG--T---GT-ACT---TT-TAACATAGGTGGA-TATA----G-GGCTTTGTTCAATCTTTTGTGGAAGAGTTTGG-AT-AAATTATTT--CAATTG-A-ATAAAAGAGATAAG--CG-TT-ACGATTTT-T-GGGGAC-CTCTTAAAATTTCGGGGTAG-------------A---TTTTTTGCTAAAAT-TAAACGA----T--AGA-T-ATCCAG---AATGCAC-AAATGTTATGCAGGTTCAA--AGCTTT-TTAGTATTCTACT-TTAAC-GTTCTTTTTTCGGCAAGTG-GAAAAAGGCAACATA-GTAT-
gi|1 : TGTTTTT--AAATAGTCGTCGAACTGCAGTGCCGTTAT-AGAATTACATTCATTTTT---AAA-TGATTTA-TTT-AAA--T-AATTGAA--AGTGTCAACTGT---ATTTGGA--A------ATATTT-GGTATTTAACATCTT--TACACTG-TTATGGAGCCTTT--AAGCC-TAGGTAAGGTC-GTGTTTTTT-TT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCATGAAAACGC-G-AT-G--TTTTCACCACA-CGCTGTACAACCG-ATTCT-GG-AA-CTCA-TTTTCAACACC-ATTT------T----TTT----TTCA-TTTTTTAACCTT-AAAA---TTCAA-TG-T--GTCCTTTT-AAAAAGC-TCTAATTA-TTAT--ATG---T-A-ATATATTG---CTGAGAATGTTAATTTACAATTGCAAT-TG-GATTAATCTCTAATATCA---TCTCGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAAC---ATCT-C--CTGAAAC-C-TGCAGTA--C-TTTACCGCCGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgt--T--TA-A-TG-T-ATCGAA--TTT--A-G-C-TCG-TAAG-TCTGT--TTTT-----C---T-CTCCGTT-CACGAA-TT-TTCA-----CATGAA----T-G-ATCA--GTTTCA--A-A-CGCT-TACAG-CG-ATT----G-AAACCCA-TTT-------C-C-CTAT----T----TTT----TGCA-TTT----ACCTT--AAAC--TTCAA-AG-TACGTC--TTT-GAAAAGTGC--AATT--TTCT--GT----A-T-AACTAT-----CCGATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCT-ATAATAGATT-TTGT---CAGCATTT-C-CACGCC-AGC-A-T-CCAAACGGAGTT-G--TCGGAAACC-TGTAG-A--A-TTTGGC--CGTGT-CCG---TG-----T-TACTAAGT-AG-AATCAGTGt
gi|11 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGG-AGAA-ACAGAGAGAAAAAATT-----GAAC-TA--GT--TGCTTCTTTATTCTGATGT---CATTTTTTG---ta
gi|12 : aatttcagccaggtttATGCA-T-TG-C-TTGATCTC---TAACA---T-TCGTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAA---AACT-T--ACGAAAA-C-T---------------C--TGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGaatataactagtgttcaa
gi|13 : acGCA-T-TG-C-TTGATCTGTAAGAACA---T-TCGT--CCAGCATTT-C-AACGCC-AGC-T-C-CCCAA---AAC--A--TCGAAAA-C-TGCAG-A--A-TTTGCC--CGTGT-CCt
gi|14 : -TCGT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAA---AACT----TCGAAAA-C-TGCAG-A--A-TTTGCC--CGTGG-CCG--CCG-----T-AAC---GT-AG-AATCAGTGa
gi|15 : T-CT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CATGAA----T-G-ATAG--TTTTCA--A-A-CGCC-TACAACAA-ATT---GGAAAACTCG-TTT-------C-CTCTA-----T----TTT----ta
gi|16 : -TC-GT--TTCTTGCC-C---T-CTCAGCT-GTCG-G-TT-T--A-----CATGAA----CTG-A--G--T----A--A-A-AACT-TCAAACCGCATTTACAG-AAAGTCA-TTT-------C-gc
gi|17 : ctttgaAAATCGGGGTGA-------------T---TTT-TTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAA-AAAATGCAC-GAATGTTGTGT-----CAACGAACGTT-TTAGCATT-
gi|18 : -TACGTC-TT---AAAAA------AATT--------CTG---A-T-AAATATTC---TCGATG-TGTTAATTCATAAATGCG---TG-C-TTGATCTC
gi|19 : CGAAAA-C-TGCAG-T--A-TTTACC--CGTGT-ACG--CCG-----T-AAC---GT-AG-AATCAGT
gi|2 : tctcGATTCTA--CGCAGTAACAACGG-GAC-AGTAAAGTAAAATG--AAAGCACA------AAAAG--AG-TGAACC-TA--GTATTT---CTTTATTCTAGTATATTCATTTTATGATATCGAAA-TCTT--TCCA-CATA-T---GT-GAACCGTCAAAATA-TGTCGAAAGTAA-GGAG-AGAGTCACTG---CTGT-TATCTTCCG-GATAGAAAATATAA----TATTGT-AAAAATATGGT---AG-AAACTCAC-T--AAC-AACAAACGATCA-TTGATACAGC-GCG-TGATCG-TTATAA---TGAC-GT-C--C-TGCACACG-GCAGTCC--GTT-AC-G--TAGGACCACTTTGT-C-CGTAT-CGCGTAA--TTTTATC-A---TGT-T-T-A-T-TAA-ATTA----C-CGCATTCCTTT-G-T---GTTTTTTTGAC----CT-GTCAATGA-G---------ATTA--TT-TAA-ATG---GGAATATAATGAG-AGCTT--T-CA--TTT---TGGTGAAGTTTGG-AT-AGATTATTTATC-ATTG-ATAGAAAAGAGATAAAGCCG-TTGACG----T-AAGGACACTC-CTTAAAAA-TCGGGGTGA-------------T---TTTT--GCT--AAT-T-AAC-A----TTAAGA-T-ATCCAGGAAAATGCAC-AAATGTT-TGC-----CCA-AAAC-TTCTTAGTATT-TACTGTTAAAAG--TTATAT--GGCAAGTC-GGGAAAAGCAA---AAGTAT-TGCATA-CTCA-T-TTAGAA-AATAATTATTTTTC-AAAAGCCTGTTTTT--AA-TAGTCGCC--ACTAGATTCACGTT-TTAGA----CATTCATTTTT---AAAATGATTTA-TTA-AAAAATGAAT-GAACAAGGATCAACTGTTACAGTTGTA--AT-----ATGTCA-TAT--T--ACAC--TGTTA-A-TG-T-ATGGC-CCTTTTAA-ACC-TAG-TAAG-TC-GT--TTTTT--T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CATGAA----C-G-ATGGTTTTTTCA--A-CTCGCT-TAC-ACCA-TTT---GG-AAACTCA-TTT-------CACTCAA-----T----TTTTTTGTTCATTTTTT-AACCTT-AAAAA--TTCAAGTG-TATGTC-TTTTAAAAAAGT-T--AATTA-TTTT--TTATGTATA-TAATATTGGGCCCGAGA-TGTTAATTTACAAATGCATT-TGTT-TTGATCTCT-ATATCA---T-TCGT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAA---ATCT-C--TCGAAAA-CATGCAA-AGTA-TTTACC--CGTGT-CAGGCCCG-----TAAAC---GTCAG-AATCAG
gi|20 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---ACAT
gi|21 : taattttgattcGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|3 : AGACTGATTCTA--T-C-GTAACA--GG-ACCTA-TAAG---AAATGG-AAAATACAG-GAAAAAAAACTAAATAAAAC-TG--AT--TG---TTT-GT----ATAT---CATTTTAC--------AA-TCTT--TG-A-TATT-T---ACTGAACTTTCAAAATA-TGT-AAAACTTC-GGAACA----CACTG---CT-T-TATC----G-GATTGAAAATATAA----TATTTT-GAAAA-ATGGT---AG-AAACTCGC----A-C-AA-AAACG-TCA----AT--AGCAGCG-TAG-CG-TTATAATATTGAC-GC-T--C-TCC----G-GT-GTCC--ATT-AC-G--TAGAGC-ACTTT---C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGTGCATTC-GTT-GAT---GTTTTTT-GAC----TT-GTCATTGATGTCTTTGATGATTA--TT-TAA--TG---GGA-TGTA----G-AGCTT--TTCA--TTT---TGGAAAAGTTTG--ATAAAATTATTT--C-ATTG-A-ATAAAA-AGATAAAGCCG-TT-ACG----TGA-GGA-ACTCTCTTAAAACTTCGTAGTGA-------------TATCTTTTTTGCT--AATAT-AAC-A----T--AGA-G-ATTC-G-AAAATGCAC-AAATGTTATGC-----CAACAAAC-TT-TGAGCATT-T--T-TTAA--G---TATATCAGGCAAGTC-AGAAAA--CAA---A-GTAT-TACA---CTCA-T-T-AGAA-A-CAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCGC---ACATGAATCACA-T-T-AAA----CATTTATTTTT----AATTGATTAA-TAA-AAGA-T-AAT-GAA--AGAGTCAACTTT---AATGATA--A------AT-TTA-TAT-TT--ACAC--C--TATA-TGAT-ATTGAACTTTT--A-GGC-TAG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATG------------------------A-A-CGCT-TACAACCA-ATT---GG-ACACTCA-TTT-------C-GTCTA-----T----TTT----TGCA-TATTT-AACCCT-AAAAAT-TTCAA-TG-TA-GTC-TTTT-AAAAAGT-G--AATTA-TTTT--GTA---AGA-AAATATTG---CTGATA-TATTTATTAATAATTGCA-TATG-C-TTGATCT-TAATAACA---T-TTGT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAA---AACTCAGTTCGAAAA-C-TGCAG-A--A-TTTTCC--CGTGT-CCG--CCG-----T-AAA---GT-AGAAATCAGTGatga
gi|4 : taGACTGATTCTA--C-G-GTAACA--GG-GAC-A-TAAA---AAATGG-AAAA-ACAG-AAAAAAA---TAA---AAAC-TA--GT--TG-------------ATAT---CATTTTTCG-------AA-TCTT--TG-A-TATT-T---G---AACTTTCC---TAGTGT-AAAAAATC-AGGA-A----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTTTAAAAA-ATGGT---AG-AAACTCGCAC--A---AA-AAACG-TCA-TT-A----GTATCG-TAA-CG-TTATA---TTGAC-GC-T--CCTCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTT--C-CGTAT-C-CG-AA--TTGTATC-A---TGT-T-T-AGT-TAA-ATTA----CGTGCATTCCGTT-GAT---ATTTTTT-GAC----TT-GTCATTGATG---------ATTA--TT-TAA-ATG---GGA-TATA----G-AGCTT--TTCA--CTT---TGTGAAAGTCTGA-AT-AAATTATTT--T-ATTG-A-ATAAAAGAGATAAAGCCG-GT-ACA----T-A-GGACACTCTCTTAAAAAATCGGGATGA-------------T---TTTTT-GCT--AAT-G-AAC-A----T--AGA-T-ATCCAG-AAAATGCAA-AAATGTTATGC-----CAACAAACATT-TTAGCATT-TACT-TTAA--A--GTGTATCAGGCAAGTC-GGAAAA--CAA---A-TTAT-TGCA---CTCATT-T-AGAAGA-TAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCGC---ACTAGAATCACGT
gi|5 : gcT---TTGAAAAGTTTGG-GT-AAATTACTT--C-ATTG-A-ATAAA-GAGATAG-GTCA-TTCACGC---T-A-GGACATTCTCTGACAAAATCGGGGTG------------------CTTTTTATT--AAT-T-AAC-AACATT--AGACT-ATCCAG-AAAATGCACCGAATGT-AT--------------C-TTATTAGCATT-CAGT-CTAA--A--GTGTATCAGGCGAGTTTGGAAAA--CAT---G-GTATATGCAGCACTCA-TCT-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA----ACTAGAATCATGTT-T-ATA----TATCAATTTTT---AAAATGATTAA-GTT-AA----------------AGTCAACTGT---AATTGTATTACCGGGTATGT---TATATT--ACAC--TC-TA-A-TC-A-ATGGGACCTTT--A-AGC-CTT-TAAG-TC-GT--TTCTT-CTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CATGAA----T-GAATAAGTTTTTCA--A-A-CGCT-TAC-ACAG-ATT---GG-AAACTCA-TTT-------C-CTCTA-----T----TTT----TGCA--TTTT-AACGTT-TAACA--CTCAA-TGTTACGTC-TTTC-AAAAA---------TA-TCGT--AT--------AAATATTG----CGACG-TG
gi|6 : TTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCGC---ACTAGAA-CACGTT-T-AGG----CGTTCATTTTTTTTAAAATGATTAA-TTATAAAA-T-AAT-GAA--AGAGTCAATTGT---AATGAT---G------AT-TTATTATATT--ACAC--T--T-TA-TG-T-A-GGA--CCTC--A-GCCTTAG-TAAG-TC-GT--TATTT-CT-C---T----CGTT-TACGAG-TT-TTCT-----CATAAA----T-G-A-AG--TTTCAA--A-A-CGCT-TTCCAACG-ATT---GC-GAAGTAA-TTT-------T-CTGTATTTCCT----TTT----TTCA-TTTTTAAACCTT-AAAAAATTCCAA-TG-TACTTC-TTTT-AAAA--T-T--AATTA-TTTTTATTG---A-ATAAATATTGC--CCAAT--TGTTAA-TTATAACTGCA-T-TG-C-TTACTTTCTAATAATAT--T-TCGT--CC-GCATTT-T-AACGCC--GC-A-T-CCAAA---AACT----TCGAAAA-C-TGCTG-A--ATTTTTCC--CGTGTCCCG--CCGTTCGTT-AA----GT-AG-AATCAGTG
gi|7 : tcatATTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGG----CGTTCATTTTT---AAAATGATTAATTAT-AAAA-T-AAT-GAA--AGAGTCAATTGT---AATGAT---G------AT-TTATTATATT--ACAC--T--TTAA-TG-T-ATG--ACATTTC-A-GCC-TAG-TAAG-TC-GT--TATT---T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAA----T-G-ATAG--TTTTCA--A-A-CGCT-TCCAACCG-ATT---GG-AAAGTCATTTT-------C-CTGTG-----TTTCCTTT----TTCA-TTTTA-AACCTTAAAAAA--TTCAA-TG-TACTTC-TTTT-TAAAAGT-G--AATTATTTTT--ATG---A-ATAAATATTG---CCAATA-TGTTAATTTATAAATGCA-T-TG-C-TTACTCTCTAATAATA---T-TCGT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAA---AACT----TCGAAAA-C-TGCAG-A--A-TTTCCC--CGTGT-CTG--CCG-----T-AAA---GT-AG-AATCAGTG
gi|8 : tcGACTGATTCTGACC-C-GTAACA--AGCGAC-A-TA-A---AAATGGAAAAACACAA-GGAAAAAAA-TAA-TAAAATATATTGT--TC---TTATATTCTGATAT---CATTT--CG-------AACTCTT--TG-ACTATT-T---G--AAACTTTC-AAATT-TGT-AAAAATTCAAGGA-A----CA-TG---CT-T-TATC---CGAAAAAGAAAAGATAA----TATTTTGAAAAG-ATGATTAAAA-AAACT-GC-CGTA-CAAA-AAACC-TCA-GG-TGG-AGTAACG---A-CG-TTATAAC--TGAC-GC-TC-C-TCC---CA-GC-GTCCCGGTTAAC-GATTAGGAC-ACTTTTC-CGCATATAC-CG-AATGTTCTATC-AGCCTGT-TCT-AGTATCA-ATTACGATCGCGCATTCCGTT-GAT---TTTTTAA-AAC----TTCGTCATTGATG---------ATCAGTCT-TAA-CTG---GCG-TGGA------AGCTT--TTCA--CTT---TGTGAAAATGTGGCATAA
gi|9 : tATTGACCGC-TTCC-TCC---CGAGC-GCCC--GTTGAC-G--TAGGAC-TTTTTTTTC-CGTAT-T-CG-AA--TTTTATC-A---TGT-T-TTAGT-GAA-ATTAAG--CTTGCATTCCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCT---AT-AATA--TTGTAA-ATG---GGA-TATA----GAAGCTT--TTCA---TT---TGTGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAGAGAT-AAGCCGTTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGATTTTTTTTTTTTTT---TTTTTTGCT--AAT-TCAAC-A----T--AGA-TAATCCAG-AAAATGCAC--CATG-TATGT-----CAACGACG-TT-TTAGCATT-T
Alignments
lowQualScore : 111 11 111 2222 11111111 111 5555555555 11 1 3333333 11 2222222 111 111 1111 1 111 22222222 4444444444 1 1 2222 1111 222222 1 1 22222 1 111 1111 111 1111 444444444 111 1111 111 111 2 2222 444444444444444444 111 1111 11 11111 11 1 1 3333333 222 11111 333 11111 111 111 1111 111 111 11111 111 3333333333333333333 11111111 11 11111 222222222222222 111 111111 1111 1111111111 111 11111 33333333 11 111111 11111
lowQualScore : 77 5 5 77 5 5 5 000 5 66 000 2222 1 6 99 88888888 3 3 1 111 7777777777 8 11 6 8 8 2222222 66 0 8 1 00 2222222 5 444 8 8 444 8 0 7777 6 8 444 8 3 99999999 8 8 5555555555 0 0 8 8 7777 6 6666 6 111111 6 99 3 6 99 3 44444 6 6 3 99 6 111 6 6 6 6 6 4444 99 6 111 77 4444 99 1 99 333333333 99 6 6 111 6 4444 6 99 222 000 11 5 5 99 6 6 6 9 0 0000 888 2 5 666666666666666666 77 111 5 2222 77 555 5 22 0 44444 11 7 1 5 0 8 8888888 1 5 3 8 444 66666 8 111 22222 111 77 555 6 6 4444 0 111 3 444 33333 6 99 111 1 8888888888888888888 7 99 6 5 55555555 666 0 22 99 5 77 5 5 5 66 999 4 777 4 4 3 4 4 2 11111 555555555555555 3 66 4 4 4 4 4 333 4 4 222222 4 0 0000 4444444444 5 5 5 5 77 555 5 5 1 5 5 77777 0 5 0 777 11111111 888 5 55 3 0 999 4 4 3 0 0 888 4 4 66 4 4 33 4 4 4 777 000000 4 4 4 4 4 55 4 2 55 3 55 00000 4 777 4 4
lowQualScore : .. . . .. . . . ... . .. ... .... . . .. ........ . . . ... .......... . .. . . . ....... .. . . . .. ....... . ... . . ... . . .... . . ... . . ........ . . .......... . . . . .... . .... . ...... . .. . . .. . ..... . . . .. . ... . . . . . .... .. . ... .. .... .. . .. ......... .. . . ... . .... . .. ... ... .. . . .. . . . . . .... ... . . .................. .. ... . .... .. ... . .. . ..... .. . . . . . ....... . . . . ... ..... . ... ..... ... .. ... . . .... . ... . ... ..... . .. ... . ................... . .. . . ........ ... . .. .. . .. . . . .. ... . ... . . . . . . ..... ............... . .. . . . . . ... . . ...... . . .... .......... . . . . .. ... . . . . . ..... . . . ... ........ ... . .. . . ... . . . . . ... . . .. . . .. . . . ... ...... . . . . . .. . . .. . .. ..... . ... . .
lowQualScore : 99 7 7 99 7 7 7 000 0 00 222 0000 8 7 22 77777777 2 2 0 777 9999999999 0 00 0 0 0 6666666 44 8 0 0 88 0000000 0 000 0 0 000 0 8 0000 0 0 000 0 2 22222222 0 0 0000000000 6 0 0 0 0000 7 0000 7 222222 7 22 3 7 22 3 55555 7 7 3 22 7 777 7 7 7 7 7 2222 22 7 777 77 2222 22 7 22 333333333 22 7 7 777 7 2222 7 22 888 000 11 7 7 22 7 7 7 8 0 8888 777 5 4 777777777777777777 99 666 7 1111 99 999 7 00 1 33333 99 1 4 7 8 0 2222222 4 6 2 0 222 00000 0 222 00000 000 99 777 7 7 2222 7 777 5 333 22222 7 22 777 0 3333333333333333333 3 22 7 7 00000000 111 7 33 33 7 11 7 0 0 99 222 4 888 4 4 6 4 4 2 11111 777777777777777 4 11 4 4 4 6 4 999 4 4 888888 4 4 6666 1111111111 7 7 7 7 44 000 7 0 4 0 0 44444 1 0 2 999 88888888 888 0 99 9 5 888 4 4 2 1 5 888 4 4 11 4 4 11 4 4 4 888 111111 0 0 0 0 0 55 0 4 55 6 55 00000 0 000 0 0
consensus : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGAAAAAAAT--AATAAAAC-TA--GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT-T---G--GAACTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AG-AAACTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CG-TTATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTTT-C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Reference ( family-231 ) : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGAAAAAAAAT--AATAAAAC-TA--GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT-T---G--GAACTTTCAAAATA-TGTAAAAATTC-GGGA-A-----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AG-AAACTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CG-TTATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTTT-C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTT--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|1 : GACTGATTTAA--C-C-GTAACA--GG-GAC-A-TAAC---AA-TGGAAAA-CA--GGAAAAAAA------TAAAAC-TA--GT--AG---TTTTATTCTGATAT---CATTTTCTC---TCCGAA-TCTTCATGAA-TATTATATAG--AAACTTTCAAAA-A-TGTGAAAATTC-AGGA-A-----CAATGCATCT-TATATC---CG-GATAG--AATATAAATCTTATTTG-TAAAA-ATGGT---AGAAAACTTGC-C--A-C-AA-AACCG-TCATTT---ATTAAGC-GC-TGA-CGTTTATAAC--TGAC-GCGT--C-CTCGG-CA-GC-GTCG--TTT-ACGG--TAGGACAACTTTT----CGTAT-C-CGTAA--TTTTATCAA---TGTGT-T-AGT-TGACATTA----CGT--GCATTCCGTT-GAT---GTTTTTT-GACGGCTTT-CTCATGG--ATGT-----GT-ACT---TT-TAACATAGGTGGA-TATA----GG-GCTTTGTTCAATCTTTTGTGGAAGAGTTTGG-AT-AAATTATTT--CAATTG-A-ATAAAAGAGATAAG--CGTT-ACGATTTT-T-GGGGAC-CTCTTAAAATTTCGGGGTAG-------------A---TTTTTTGCTAAAAT-TAAACGA----T--AGA-T-ATCCAG---AATGCAC-AAATGTTATGCAGGTTCAA--AGCTTT-TTAGTATTCTACT-TTAAC-GTTCTTTTTTC-GGCAAGT-GG-AAAAAGGCAACATA-GTAT-
gi|1 : TGTTTTT--AAATAGTCGTCGAACTGCAGTGCCGTTAT-AGAATTACATTCATTTTT---AAA-TGATTTATT-T-AAA--T-AATTGAA--AGTGTCAACTGT---ATTTGGA--A------ATATTT-G-GTATTTAACATC-T--TTACA-CTG-TTATGGAGCCTTT--AAGCCT-AGGTAAGGTC-GTGTTTTTT-TT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCATGAAAACGC-G-AT--G--TTTTCACCACA-CGCTGTACAACCG-ATTCT-GG-AA-CTCA-TTTTCAACAC-CATTTT----TT-----T----TT-CA-TTTTTTAA-CCTT-AAAA---TTCAA-TG-T--GTCCTTTT-AAAAAGCTCTAATTA-TTATA--TG---T-A-ATATATTG---CT-GAGAATGTTAATTTACAATTGCAAT-TG-GATTAATCTCTAATATCA---TCT-CGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAAC---ATC----T-C-CTGAAAC-C-TGCAGTA--C-TTTACCGCCGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgt-T--T---A-ATG-T-ATCGAA--TTT--A-GC-T-CG-TAAG-TCTGT--TTTT-----C---T-CTCCGTT-CACGAA-TT-TTCA-----CATGAA----T-G-ATCAG--TTT-CA--A-A-CGCT-TACAG-CG-ATT----G-AAACCCA-TTT------C-C-CTAT----TT-----T----TTGCA-TTT----A-CCTT--AAAC--TTCAA-AG-TACGTC--TTT-GAAAAGTG--CA--A-TTTTC--TGT--A-T-AACTAT-----CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCT-ATAATAGATT-T-TGT---CAGCATTT-C-CACGCC-AGC-A-T-CCAAACGGAGT----TGT-C-GGAAACC-TGTAG-A--A-TTTGGC--CGTGT-CCG---TG-----T-TACTAAGT-AG-AATCAGTGt
gi|11 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAGAA--ACAGAGAGAAAA----AATTGAAC-TA--GT--TGCTTCTTTATTCTGATGT---CATTTTTTG---ta
gi|12 : aatttcagccaggtttATGCA-T-TG-C-TTGATCTCTAA---CA---T-T-CGTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAA---AAC----T-TAC-GAAAA-C-T---------------C--TGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGaatataactagtgttcaa
gi|13 : acGCA-T-TG-C-TTGATCTGTAAGAACA---T-T-CGT--CCAGCATTT-C-AACGCC-AGC-T-C-CCCAA---AAC----A-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGT-CCt
gi|14 : -T-CGT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGG-CCG--CCG-----T-AAC---GT-AG-AATCAGTGa
gi|15 : T-CT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CATGAA----T-G-AT-AG--TTTTCA--A-A-CGCC-TACAACAA-ATT---GGAAAACTCG-TTT------C-CTCTAT----TT-----T----ta
gi|16 : -TC-GT--TTCTTGCC-C---T-CTCAGCT-GTCG-G-TT-T--A-----CATGAA----CTG----AG--T----A--A-A-AACT-TCAAACCGCATTTACAG-AAAGTCA-TTT------C-gc
gi|17 : ctttgaAAATCGGGGTGA-------------T---TTT-TTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAA-AAAATGCAC-GAATGTTGTGT-----CAACGAACGTT-TTAGCATT-
gi|18 : -TACGTC-TT---AAAAA-----AATT------C--TG---A-T-AAATATTC---TC-GATG-TGTTAATTCATAAATGCG---TG-C-TTGATCTC
gi|19 : C----T-C-C-GAAAA-C-TGCAG-T--A-TTTACC--CGTGT-ACG--CCG-----T-AAC---GT-AG-AATCAGT
gi|2 : tGATTCTA--CGCAGTAACAACGG-GAC-AGTAAAGTAAAATG-AAAG-CACA------AAAAG--AGTGAACC-TA--GTATTT---CTTTATTCTAGTATATTCATTTTATGATATCGAAA-TCTT--TCCA-CATA-T---GT-GAACCGTCAAAATA-TGTCGAAAGTA-AGGA-GAGAGTCACTG---CTGT-TATCTTCCG-GATAGAAAATATAA----TATTGT-AAAAATATGGT---AG-AAACTCAC-T--AAC-AACAAACGATCA-TTGATAC--AGC-GCGTGATCG-TTATAA---TGAC-GT-C--C-TGCACACG-GCAGTCC--GTT-AC-G--TAGGACCACTTTGT-C-CGTAT-CGCGTAA--TTTTATC-A---TGT-T-T-A-T-TAA-ATTA----C-C--GCATTCCTTT-G-T---GTTTTTTTGAC----CT-GTCA-----ATG------AG-ATTA--TT-TAA-ATG---GGAATATAATGAGA-GCTT--T-CA--TTT---TGGTGAAGTTTGG-AT-AGATTATTTATC-ATTG-ATAGAAAAGAGATAAAGCCGTTGACG----T-AAGGACACTC-CTTAAAAA-TCGGGGTGA-------------T---TTTT--GCT--AAT-T-AAC-A----TTAAGA-T-ATCCAGGAAAATGCAC-AAATGTT-TGC-----CCA-AAAC-TTCTTAGTATT-TACTGTTAAAAG---TTATAT--GGCAAGTCGGGAAAA--GCAA---AAGTAT-TGCATA-CTCA-T-TTAGAA-AATAATTATTTTTC-AAAAGCCTGTTTTT--AA-TAGTCGCC--ACTAGATTCACGTT-TTAGA----CATTCATTTTT---AAAATGATTTATT-A-AAAAATGAAT-GAACAAGGATCAACTGTTACAGTTGTA--AT-----ATGTCA-T-AT--T--ACA-C-TGTT---A-ATG-T-ATGGC-CCTTTTAA-ACCT-AG-TAAG-TC-GT--TTTTT--T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CATGAA----C-G-AT-GGTTTTTTCA--A-CTCGCT-TAC-ACCA-TTT---GG-AAACTCA-TTT------CACTCAAT----TT-----TTTTGTT-CATTTTTT-AA-CCTT-AAAAA--TTCAAGTG-TATGTC-TTTTAAAAAAGTT--AATTA-TTTTT--TATGTATA-TAATATTGGGCCC-GAGA-TGTTAATTTACAAATGCATT-TGTT-TTGATCTCT-ATATCA---T-T-CGT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAA---ATC----TCT-C-GAAAA-CATGCAA-AGTA-TTTACC--CGTGT-CAGGCCCG-----TAAAC---GTCAG-AATCAG
gi|20 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---ACAT
gi|21 : taattttgattcGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|3 : AGACTGATTCTA--T-C-GTAACA--GG-ACCTA-TAAG---AAATGGAAAA-TACAGGAAAAAAAACTAAATAAAAC-TG--AT--TG---TTT-GT----ATAT---CATTTTAC--------AA-TCTT--TG-A-TATT-T---ACTGAACTTTCAAAATA-TGTAAAACTTC-GGAACA-----CACTG---CT-T-TATC----G-GATTGAAAATATAA----TATTTT-GAAAA-ATGGT---AG-AAACTCGC----A-C-AA-AAACG-TCA------AT--AGCAGCGTAG-CG-TTATAATATTGAC-GC-T--C-TCC----G-GT-GTCC--ATT-AC-G--TAGAGC-ACTTT---C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGT--GCATT-CGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTCTTTGATGATTA--TT-T-A-ATG---GGA-TGTA----GA-GCTT--TTCA--TTT---TGGAAAAGTTT-G-ATAAAATTATTT--C-ATTG-A-ATAAAA-AGATAAAGCCGTT-ACG----TGA-GGA-ACTCTCTTAAAACTTCGTAGTGA-------------TATCTTTTTTGCT--AATAT-AAC-A----T--AGA-G-ATTC-G-AAAATGCAC-AAATGTTATGC-----CAACAAAC-TT-TGAGCATT-T--T-TTAA--G----TATATCAGGCAAGTCAG-AAAA---CAA---A-GTAT-TACA---CTCA-T-T-AGAA-A-CAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCGC---ACATGAATCACA-T-T-AAA----CATTTATTTTT----AATTGATTAATA-A-AAGA-T-AAT-GAA--AGAGTCAACTTT---AATGATA--A------AT-TTA-T-AT-TT--ACA-C-C--T---ATATGAT-ATTGAACTTTT--A-GGCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATG-------------------------A-A-CGCT-TACAACCA-ATT---GG-ACACTCA-TTT------C-GTCTAT----TT-----T----TG-CA-TATTT-AA-CCCT-AAAAAT-TTCAA-TG-TA-GTC-TTTT-AAAAAGTG--AATTA-TTTTG--TA---AGA-AAATATTG---CT-GATA-TATTTATTAATAATTGCA-TATG-C-TTGATCT-TAATAACA---T-T-TGT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAA---AACTCAGT-T-C-GAAAA-C-TGCAG-A--A-TTTTCC--CGTGT-CCG--CCG-----T-AAA---GT-AGAAATCAGTGatga
gi|4 : taGACTGATTCTA--C-G-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA--ACAG--AAAAAAAT--AA--AAAC-TA--GT--TG-------------ATAT---CATTTTTCG-------AA-TCTT--TG-A-TATT-T---G---AACTTTCC---TAGTGTAAAAAATC-AGGA-A-----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTTTAAAAA-ATGGT---AG-AAACTCGCAC--A---AA-AAACG-TCA-TT---A----GTATCGTAA-CG-TTATA---TTGAC-GC-T--CCTCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTT--C-CGTAT-C-CG-AA--TTGTATC-A---TGT-T-T-AGT-TAA-ATTA----CGT--GCATTCCGTT-GAT---ATTTTTT-GAC----TT-GTCATTG--ATG---------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGTGAAAGTCTGA-AT-AAATTATTT--T-ATTG-A-ATAAAAGAGATAAAGCCGGT-ACA----T-A-GGACACTCTCTTAAAAAATCGGGATGA-----------------TTTTTTGCT--AAT-G-AAC-A----T--AGA-T-ATCCAG-AAAATGCAA-AAATGTTATGC-----CAACAAACATT-TTAGCATT-TACT-TTAA--A---GTGTATCAGGCAAGTCGG-AAAA---CAA---A-TTAT-TGCA---CTCATT-T-AGAAGA-TAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCGC---ACTAGAATCACGT
gi|5 : gcT---TTGAAAAGTTTGG-GT-AAATTACTT--C-ATTG-A-ATAAA-GAGATAG-GTCATTCACGC---T-A-GGACATTCTCTGACAAAATCGGGGTG------------------CTTTTTATT--AAT-T-AAC-AACATT--AGACT-ATCCAG-AAAATGCACCGAATGT-AT--------------C-TTATTAGCATT-CAGT-CTAA--A---GTGTATCAGGCGAGTTTG-GAAA--ACAT---G-GTATATGCAGCACTCA-TCT-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA----ACTAGAATCATGTT-T-ATA----TATCAATTTTT---AAAATGATTAAGT-T-AA----------------AGTCAACTGT---AATTGTATTACCGGGTATGT---T-ATATT--ACA-C-TC-T---A-ATC-A-ATGGGACCTTTA-A-GCCT--T-TAAG-TC-GT--TTCTT-CTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CATGAA----T-GAAT-AAGTTTTTCA--A-A-CGCT-TAC-ACAG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TG-CA--TTTT-AA-CGTT-TAACA--CTCAA-TGTTACGTC-TTTC-AAAAA--------TA-TCGTA--T--------AAATATTG----C-GACG-TG
gi|6 : TTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCGC---ACTAGAA-CACGTT-T-AGG----CGTTCATTTTTTTTAAAATGATTAATT-ATAAAA-T-AAT-GAA--AGAGTCAATTGT---AATGATG--A-------T-TTA-TTATATT--ACA-C-T--T---T-ATG-T-A--GGACCTC---A-GCCTTAG-TAAG-TC-GT--TATTT-CT-C---T-C---GTT-TACGAG-TT-TTCT-----CATAAA----T-G-A--AG--TTTCAA--A-A-CGCT-TTCCAACG-ATT---GC-GAAGTAA-TTT------T-CTGTAT----TTCCTTTT----TT-CA-TTTTT-AAACCTT-AAAAAATTCCAA-TG-TACTTC-TTTT-AAAA--TT--AATTA-TTTTTATTG---A-ATAAATATTG---CCCAAT--TGTTAATT-ATAACTGCA-T-TG-C-TTACTTTCTAATAATA---T-TTCGT--CC-GCATTT-T-AACGCCG--C-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCTG-A--ATTTTTCC--CGTGTCCCG--CCGTTCGTT-AA----GT-AG-AATCAGTG
gi|7 : tcatATTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGG----CGTTCATTTTT---AAAATGATTAATTAT-AAAA-T-AAT-GAA--AGAGTCAATTGT---AATGAT---G------AT-TTATT-ATATT--ACA-CTT--T---A-ATG-T-ATG--ACATTTC-A-GCCT-AG-TAAG-TC-GT--TATT---T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAA----T-G-AT-AG--TTTTCA--A-A-CGCT-TCCAACCG-ATT---GG-AAAGTCATTTT------C-CTGTGTTTCCTT-----T----TT-CA-TTTTA-AA-CCTTAAAAAA--TTCAA-TG-TACTTC-TTTT-TAAAAGTG--AATTATTTTTA--TG---A-ATAAATATTG---CC-AATA-TGTTAATTTATAAATGCA-T-TG-C-TTACTCTCTAATAATA---T-T-CGT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTCCC--CGTGT-CTG--CCG-----T-AAA---GT-AG-AATCAGTG
gi|8 : tcGACTGATTCTGACC-C-GTAACA--AGCGAC-A-TAAA---AA-TGGAAAAACACAAGGAAAAAAAT--AATAAAATATATTGT--TC---TTATATTCTGATAT---CATTT--CG-------AACTCTT--TG-ACTATT-T---G--AAACTTTC-AAATT-TGTAAAAATTCAAGGA-A-----CA-TG---CT-T-TATC---CGAAAAAGAAAAGATAA----TATTTTGAAAAG-ATGATTAAAA-AAACT-GC-CGTA-CAAA-AAACC-TCAGGT---GG--AGTAAC--GA-CG-TTATAAC--TGAC-GC-TC-C-TCC---CA-GC-GTCCCGGTTAAC-GATTAGGAC-ACTTTTC-CGCATATAC-CG-AATGTTCTATC-AGCCTGT-TCT-AGTATCA-ATTACGATCGC--GCATTCCGTT-GAT---TTTTTAA-AAC----TTCGTCATTG--ATG---------ATCAGTCT-TAA-CTG---GCG-TGGA-----A-GCTT--TTCA--CTT---TGTGAAAATGTGGCAT-AA
gi|9 : t-TTGACCGC-TTCC-TCC---CGAGC-GCCC--GTTGAC-G--TAGGAC-TTTTTTTTC-CGTAT-T-CG-AA--TTTTATC-A---TGT-T-TTAGT-GAA-ATTA----AGCTTGCATTCCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCT-----AT-AATA--TTGTAA-ATG---GGA-TATA----GAAGCTT--TTCA---TT---TGTGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAGAGATAA-GCCGTTTACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGATTTTTTTTTTTTTT---TTTTTTGCT--AAT-TCAAC-A----T--AGA-TAATCCAG-AAAATGCAC--CATG-TATGT-----CAACGACG-TT-TTAGCATT-T
Alignments
lowQualScore : 111 11 111 1111111 11111111 111 5555555555 11 1 3333333 2222222 111 111 1111 1 111 22222222 4444444444 1 1 2222 1111 222222 1 1 22222 1 111 1111 111 1111 444444444 111 1111 111 111 2 2222 444444444444444444 111 1111 11 11111 11 1 1 3333333 222 11111 333 11111 111 111 1111 111 111 11111 111 3333333333333333333 11111111 11 11111 222222222222222 111 111111 1111 1111111111 111 11111 33333333 11 111111 11111
lowQualScore : 77 5 5 77 5 5 5 000 5 66 111 2222222 6 99 88888888 3 3 1 111 7777777777 8 11 6 8 8 2222222 66 0 8 1 8 2222222 5 444 8 8 444 8 0 7777 6 8 444 8 3 99999999 8 8 5555555555 0 0 8 8 7777 6 6666 6 111111 6 99 3 6 99 3 44444 6 6 3 99 6 111 6 6 6 6 6 4444 99 6 111 77 4444 99 1 99 333333333 99 6 6 111 6 4444 6 99 222 000 11 5 5 99 6 6 6 9 0 0000 888 2 5 666666666666666666 77 111 5 2222 77 555 5 22 0 44444 11 7 1 5 0 8 8888888 1 5 3 8 444 66666 8 111 22222 111 77 555 6 6 4444 0 111 3 444 33333 6 99 111 1 8888888888888888888 7 99 6 5 55555555 666 0 22 99 5 77 5 5 5 66 999 4 777 4 4 3 4 4 2 11111 555555555555555 3 66 4 4 4 4 4 333 4 4 222222 4 0 0000 4444444444 5 5 5 5 77 555 5 5 1 5 5 55555 0 5 0 777 11111111 888 5 55 3 0 999 4 4 3 0 0 888 4 4 66 4 4 33 4 4 4 777 000000 4 4 4 4 4 55 4 2 55 3 55 00000 4 777 4 4
lowQualScore : .. . . .. . . . ... . .. ... ....... . .. ........ . . . ... .......... . .. . . . ....... .. . . . . ....... . ... . . ... . . .... . . ... . . ........ . . .......... . . . . .... . .... . ...... . .. . . .. . ..... . . . .. . ... . . . . . .... .. . ... .. .... .. . .. ......... .. . . ... . .... . .. ... ... .. . . .. . . . . . .... ... . . .................. .. ... . .... .. ... . .. . ..... .. . . . . . ....... . . . . ... ..... . ... ..... ... .. ... . . .... . ... . ... ..... . .. ... . ................... . .. . . ........ ... . .. .. . .. . . . .. ... . ... . . . . . . ..... ............... . .. . . . . . ... . . ...... . . .... .......... . . . . .. ... . . . . . ..... . . . ... ........ ... . .. . . ... . . . . . ... . . .. . . .. . . . ... ...... . . . . . .. . . .. . .. ..... . ... . .
lowQualScore : 99 7 7 99 7 7 7 000 0 00 333 3333333 7 22 77777777 2 2 0 777 9999999999 0 00 0 0 0 6666666 44 8 0 0 0 0000000 0 000 0 0 000 0 8 0000 0 0 000 0 2 22222222 0 0 0000000000 6 0 0 0 0000 7 0000 7 222222 7 22 3 7 22 3 55555 7 7 3 22 7 777 7 7 7 7 7 2222 22 7 777 77 2222 22 7 22 333333333 22 7 7 777 7 2222 7 22 888 000 11 7 7 22 7 7 7 8 0 8888 777 5 4 777777777777777777 99 666 7 1111 99 999 7 00 1 33333 99 1 4 7 8 0 2222222 4 6 2 0 222 00000 0 222 00000 000 99 777 7 7 2222 7 777 5 333 22222 7 22 777 0 3333333333333333333 3 22 7 7 00000000 111 7 33 33 7 11 7 0 0 99 222 4 888 4 4 6 4 4 2 11111 777777777777777 4 11 4 4 4 6 4 999 4 4 888888 4 4 6666 1111111111 7 7 7 7 44 000 7 0 4 0 0 99999 1 0 2 999 88888888 888 0 99 9 5 888 4 4 2 1 5 888 4 4 11 4 4 11 4 4 4 888 111111 0 0 0 0 0 55 0 4 55 6 55 00000 0 000 0 0
consensus : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGAAAAAAAT--AAT-AAAC-TA--GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT-T---G--GAACTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AG-AAACTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CG-TTATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTTT-C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Reference ( family-231 ) : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGAAAAAAAT--AATAAAAC-TA--GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT-T---G--GAACTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AG-AAACTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CG-TTATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTTT-C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|1 : GACTGATTTAA--C-C-GTAACA--GG-GAC-A-TAAC---AA-TGGAAAA-CA---GGAAAAAAAT--A---AAAC-TA--GT--AG---TTTTATTCTGATAT---CATTTTCTC---TCCGAA-TCTTCATGAA-TATTATATAG--AAACTTTCAAAA-A-TGTGAAAATTC-AGGA-A-----CAATGCATCT-TATATC---CG-GATAG--AATATAAATCTTATTTG-TAAAA-ATGGT---AGAAAACTTGC-C--A-C-AA-AACCG-TCATTT---ATTAAGC-GC-TGA-CGTTTATAAC--TGAC-GCGT--C-CTCGG-CA-GC-GTCG--TTT-ACGG--TAGGACAACTTTT----CGTAT-C-CGTAA--TTTTATCAA---TGTGT-T-AGT-TGACATTA----CGT--GCATTCCGTT-GAT---GTTTTTT-GACGGCTTT-CTCATGG--ATGT-----GT-ACT---TT-TAACATAGGTGGA-TATA----GG-GCTTTGTTCAATCTTTTGTGGAAGAGTTTGG-AT-AAATTATTT--CAATTG-A-ATAAAAGAGATAAG--CGTT-ACGATTTT-T-GGGGAC-CTCTTAAAATTTCGGGGTAG-------------A---TTTTTTGCTAAAAT-TAAACGA----T--AGA-T-ATCCAG---AATGCAC-AAATGTTATGCAGGTTCAA--AGCTTT-TTAGTATTCTACT-TTAAC-GTTCTTTTTTC-GGCAAGT-GG-AAAAAGGCAACATA-GTAT-
gi|1 : TGTTTTT--AAATAGTCGTCGAACTGCAGTGCCGTTAT-AGAATTACATTCATTTTT---AAA-TGATTTATT-T-AAA--T-AATTGAA--AGTGTCAACTGT---ATTTGGA--A------ATATTT-G-GTATTTAACATC-T--TTACA-CTG-TTATGGAGCCTTT--AAGCCT-AGGTAAGGTC-GTGTTTTTT-TT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCATGAAAACGC-G-AT--G--TTTTCACCACA-CGCTGTACAACCG-ATTCT-GG-AA-CTCA-TTTTCAACAC-CATTTT----TT-----T----TT-CA-TTTTTTAA-CCTT-AAAA---TTCAA-TG-T--GTCCTTTT-AAAAAGCTCTAATTA-TTATA--TG---T-A-ATATATTG---CT-GAGAATGTTAATTTACAATTGCAAT-TG-GATTAATCTCTAATATCA---TCT-CGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAAC---ATC----T-C-CTGAAAC-C-TGCAGTA--C-TTTACCGCCGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgt-T--T---A-ATG-T-ATCGAA--TTT--A-GC-T-CG-TAAG-TCTGT--TTTT-----C---T-CTCCGTT-CACGAA-TT-TTCA-----CATGAA----T-G-ATCAG--TTT-CA--A-A-CGCT-TACAG-CG-ATT----G-AAACCCA-TTT------C-C-CTAT----TT-----T----TTGCA-TTT----A-CCTT--AAAC--TTCAA-AG-TACGTC--TTT-GAAAAGTG--CA--A-TTTTC--TGT--A-T-AACTAT-----CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCT-ATAATAGATT-T-TGT---CAGCATTT-C-CACGCC-AGC-A-T-CCAAACGGAGT----TGT-C-GGAAACC-TGTAG-A--A-TTTGGC--CGTGT-CCG---TG-----T-TACTAAGT-AG-AATCAGTGt
gi|11 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAGAA--ACAGAGAGAAAA----AATTGAAC-TA--GT--TGCTTCTTTATTCTGATGT---CATTTTTTG---ta
gi|12 : aatttcagccaggtttATGCA-T-TG-C-TTGATCTCTAA---CA---T-T-CGTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAA---AAC----T-TAC-GAAAA-C-T---------------C--TGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGaatataactagtgttcaa
gi|13 : acGCA-T-TG-C-TTGATCTGTAAGAACA---T-T-CGT--CCAGCATTT-C-AACGCC-AGC-T-C-CCCAA---AAC----A-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGT-CCt
gi|14 : -T-CGT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGG-CCG--CCG-----T-AAC---GT-AG-AATCAGTGa
gi|15 : T-CT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CATGAA----T-G-AT-AG--TTTTCA--A-A-CGCC-TACAACAA-ATT---GGAAAACTCG-TTT------C-CTCTAT----TT-----T----ta
gi|16 : -TC-GT--TTCTTGCC-C---T-CTCAGCT-GTCG-G-TT-T--A-----CATGAA----CTG----AG--T----A--A-A-AACT-TCAAACCGCATTTACAG-AAAGTCA-TTT------C-gc
gi|17 : ctttgaAAATCGGGGTGA-------------T---TTT-TTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAA-AAAATGCAC-GAATGTTGTGT-----CAACGAACGTT-TTAGCATT-
gi|18 : -TACGTC-TT---AAAAA-----AATT------C--TG---A-T-AAATATTC---TC-GATG-TGTTAATTCATAAATGCG---TG-C-TTGATCTC
gi|19 : C----T-C-C-GAAAA-C-TGCAG-T--A-TTTACC--CGTGT-ACG--CCG-----T-AAC---GT-AG-AATCAGT
gi|2 : tGATTCTA--CGCAGTAACAACGG-GAC-AGTAAAGTAAAATG-AAAG-CACA------AAAAG--AGTGAACC-TA--GTATTT---CTTTATTCTAGTATATTCATTTTATGATATCGAAA-TCTT--TCCA-CATA-T---GT-GAACCGTCAAAATA-TGTCGAAAGTA-AGGA-GAGAGTCACTG---CTGT-TATCTTCCG-GATAGAAAATATAA----TATTGT-AAAAATATGGT---AG-AAACTCAC-T--AAC-AACAAACGATCA-TTGATAC--AGC-GCGTGATCG-TTATAA---TGAC-GT-C--C-TGCACACG-GCAGTCC--GTT-AC-G--TAGGACCACTTTGT-C-CGTAT-CGCGTAA--TTTTATC-A---TGT-T-T-A-T-TAA-ATTA----C-C--GCATTCCTTT-G-T---GTTTTTTTGAC----CT-GTCA-----ATG------AG-ATTA--TT-TAA-ATG---GGAATATAATGAGA-GCTT--T-CA--TTT---TGGTGAAGTTTGG-AT-AGATTATTTATC-ATTG-ATAGAAAAGAGATAAAGCCGTTGACG----T-AAGGACACTC-CTTAAAAA-TCGGGGTGA-------------T---TTTT--GCT--AAT-T-AAC-A----TTAAGA-T-ATCCAGGAAAATGCAC-AAATGTT-TGC-----CCA-AAAC-TTCTTAGTATT-TACTGTTAAAAG---TTATAT--GGCAAGTCGGGAAAA--GCAA---AAGTAT-TGCATA-CTCA-T-TTAGAA-AATAATTATTTTTC-AAAAGCCTGTTTTT--AA-TAGTCGCC--ACTAGATTCACGTT-TTAGA----CATTCATTTTT---AAAATGATTTATT-A-AAAAATGAAT-GAACAAGGATCAACTGTTACAGTTGTA--AT-----ATGTCA-T-AT--T--ACA-C-TGTT---A-ATG-T-ATGGC-CCTTTTAA-ACCT-AG-TAAG-TC-GT--TTTTT--T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CATGAA----C-G-AT-GGTTTTTTCA--A-CTCGCT-TAC-ACCA-TTT---GG-AAACTCA-TTT------CACTCAAT----TT-----TTTTGTT-CATTTTTT-AA-CCTT-AAAAA--TTCAAGTG-TATGTC-TTTTAAAAAAGTT--AATTA-TTTTT--TATGTATA-TAATATTGGGCCC-GAGA-TGTTAATTTACAAATGCATT-TGTT-TTGATCTCT-ATATCA---T-T-CGT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAA---ATC----TCT-C-GAAAA-CATGCAA-AGTA-TTTACC--CGTGT-CAGGCCCG-----TAAAC---GTCAG-AATCAG
gi|20 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---ACAT
gi|21 : taattttgattcGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|3 : AGACTGATTCTA--T-C-GTAACA--GG-ACCTA-TAAG---AAATGGAAAA-TACAGGAAAAAAAACTAAATAAAAC-TG--AT--TG---TTT-GT----ATAT---CATTTTAC--------AA-TCTT--TG-A-TATT-T---ACTGAACTTTCAAAATA-TGTAAAACTTC-GGAACA-----CACTG---CT-T-TATC----G-GATTGAAAATATAA----TATTTT-GAAAA-ATGGT---AG-AAACTCGC----A-C-AA-AAACG-TCA------AT--AGCAGCGTAG-CG-TTATAATATTGAC-GC-T--C-TCC----G-GT-GTCC--ATT-AC-G--TAGAGC-ACTTT---C-CGTAT-C-CG-AA--TTTTATC-A---TGT-T-T-AGT-TAA-ATTA----CGT--GCATT-CGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTCTTTGATGATTA--TT-T-A-ATG---GGA-TGTA----GA-GCTT--TTCA--TTT---TGGAAAAGTTT-G-ATAAAATTATTT--C-ATTG-A-ATAAAA-AGATAAAGCCGTT-ACG----TGA-GGA-ACTCTCTTAAAACTTCGTAGTGA-------------TATCTTTTTTGCT--AATAT-AAC-A----T--AGA-G-ATTC-G-AAAATGCAC-AAATGTTATGC-----CAACAAAC-TT-TGAGCATT-T--T-TTAA--G----TATATCAGGCAAGTCAG-AAAA---CAA---A-GTAT-TACA---CTCA-T-T-AGAA-A-CAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCGC---ACATGAATCACA-T-T-AAA----CATTTATTTTT----AATTGATTAATA-A-AAGA-T-AAT-GAA--AGAGTCAACTTT---AATGATA--A------AT-TTA-T-AT-TT--ACA-C-C--T---ATATGAT-ATTGAACTTTT--A-GGCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATG-------------------------A-A-CGCT-TACAACCA-ATT---GG-ACACTCA-TTT------C-GTCTAT----TT-----T----TG-CA-TATTT-AA-CCCT-AAAAAT-TTCAA-TG-TA-GTC-TTTT-AAAAAGTG--AATTA-TTTTG--TA---AGA-AAATATTG---CT-GATA-TATTTATTAATAATTGCA-TATG-C-TTGATCT-TAATAACA---T-T-TGT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAA---AACTCAGT-T-C-GAAAA-C-TGCAG-A--A-TTTTCC--CGTGT-CCG--CCG-----T-AAA---GT-AGAAATCAGTGatga
gi|4 : taGACTGATTCTA--C-G-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA--ACAG--AAAAAAAT--AA--AAAC-TA--GT--TG-------------ATAT---CATTTTTCG-------AA-TCTT--TG-A-TATT-T---G---AACTTTCC---TAGTGTAAAAAATC-AGGA-A-----CACTG---CT-T-TATC---CG-GATAGAAAATATAA----TATTTTTAAAAA-ATGGT---AG-AAACTCGCAC--A---AA-AAACG-TCA-TT---A----GTATCGTAA-CG-TTATA---TTGAC-GC-T--CCTCC---CG-GC-GTCC--GTT-AC-G--TAGGAC-ACTTTT--C-CGTAT-C-CG-AA--TTGTATC-A---TGT-T-T-AGT-TAA-ATTA----CGT--GCATTCCGTT-GAT---ATTTTTT-GAC----TT-GTCATTG--ATG---------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGTGAAAGTCTGA-AT-AAATTATTT--T-ATTG-A-ATAAAAGAGATAAAGCCGGT-ACA----T-A-GGACACTCTCTTAAAAAATCGGGATGA-----------------TTTTTTGCT--AAT-G-AAC-A----T--AGA-T-ATCCAG-AAAATGCAA-AAATGTTATGC-----CAACAAACATT-TTAGCATT-TACT-TTAA--A---GTGTATCAGGCAAGTCGG-AAAA---CAA---A-TTAT-TGCA---CTCATT-T-AGAAGA-TAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCGC---ACTAGAATCACGT
gi|5 : gcT---TTGAAAAGTTTGG-GT-AAATTACTT--C-ATTG-A-ATAAA-GAGATAG-GTCATTCACGC---T-A-GGACATTCTCTGACAAAATCGGGGTG------------------CTTTTTATT--AAT-T-AAC-AACATT--AGACT-ATCCAG-AAAATGCACCGAATGT-AT--------------C-TTATTAGCATT-CAGT-CTAA--A---GTGTATCAGGCGAGTTTG-GAAA--ACAT---G-GTATATGCAGCACTCA-TCT-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA----ACTAGAATCATGTT-T-ATA----TATCAATTTTT---AAAATGATTAAGT-T-AA----------------AGTCAACTGT---AATTGTATTACCGGGTATGT---T-ATATT--ACA-C-TC-T---A-ATC-A-ATGGGACCTTTA-A-GCCT--T-TAAG-TC-GT--TTCTT-CTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CATGAA----T-GAAT-AAGTTTTTCA--A-A-CGCT-TAC-ACAG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TG-CA--TTTT-AA-CGTT-TAACA--CTCAA-TGTTACGTC-TTTC-AAAAA--------TA-TCGTA--T--------AAATATTG----C-GACG-TG
gi|6 : TTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCGC---ACTAGAA-CACGTT-T-AGG----CGTTCATTTTTTTTAAAATGATTAATT-ATAAAA-T-AAT-GAA--AGAGTCAATTGT---AATGATG--A-------T-TTA-TTATATT--ACA-C-T--T---T-ATG-T-A--GGACCTC---A-GCCTTAG-TAAG-TC-GT--TATTT-CT-C---T-C---GTT-TACGAG-TT-TTCT-----CATAAA----T-G-A--AG--TTTCAA--A-A-CGCT-TTCCAACG-ATT---GC-GAAGTAA-TTT------T-CTGTAT----TTCCTTTT----TT-CA-TTTTT-AAACCTT-AAAAAATTCCAA-TG-TACTTC-TTTT-AAAA--TT--AATTA-TTTTTATTG---A-ATAAATATTG---CCCAAT--TGTTAATT-ATAACTGCA-T-TG-C-TTACTTTCTAATAATA---T-TTCGT--CC-GCATTT-T-AACGCCG--C-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCTG-A--ATTTTTCC--CGTGTCCCG--CCGTTCGTT-AA----GT-AG-AATCAGTG
gi|7 : tcatATTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGG----CGTTCATTTTT---AAAATGATTAATTAT-AAAA-T-AAT-GAA--AGAGTCAATTGT---AATGAT---G------AT-TTATT-ATATT--ACA-CTT--T---A-ATG-T-ATG--ACATTTC-A-GCCT-AG-TAAG-TC-GT--TATT---T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAA----T-G-AT-AG--TTTTCA--A-A-CGCT-TCCAACCG-ATT---GG-AAAGTCATTTT------C-CTGTGTTTCCTT-----T----TT-CA-TTTTA-AA-CCTTAAAAAA--TTCAA-TG-TACTTC-TTTT-TAAAAGTG--AATTATTTTTA--TG---A-ATAAATATTG---CC-AATA-TGTTAATTTATAAATGCA-T-TG-C-TTACTCTCTAATAATA---T-T-CGT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTCCC--CGTGT-CTG--CCG-----T-AAA---GT-AG-AATCAGTG
gi|8 : tcGACTGATTCTGACC-C-GTAACA--AGCGAC-A-TAAA---AA-TGGAAAAACACAAGGAAAAAAAT--AATAAAATATATTGT--TC---TTATATTCTGATAT---CATTT--CG-------AACTCTT--TG-ACTATT-T---G--AAACTTTC-AAATT-TGTAAAAATTCAAGGA-A-----CA-TG---CT-T-TATC---CGAAAAAGAAAAGATAA----TATTTTGAAAAG-ATGATTAAAA-AAACT-GC-CGTA-CAAA-AAACC-TCAGGT---GG--AGTAAC--GA-CG-TTATAAC--TGAC-GC-TC-C-TCC---CA-GC-GTCCCGGTTAAC-GATTAGGAC-ACTTTTC-CGCATATAC-CG-AATGTTCTATC-AGCCTGT-TCT-AGTATCA-ATTACGATCGC--GCATTCCGTT-GAT---TTTTTAA-AAC----TTCGTCATTG--ATG---------ATCAGTCT-TAA-CTG---GCG-TGGA-----A-GCTT--TTCA--CTT---TGTGAAAATGTGGCAT-AA
gi|9 : t-TTGACCGC-TTCC-TCC---CGAGC-GCCC--GTTGAC-G--TAGGAC-TTTTTTTTC-CGTAT-T-CG-AA--TTTTATC-A---TGT-T-TTAGT-GAA-ATTA----AGCTTGCATTCCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCT-----AT-AATA--TTGTAA-ATG---GGA-TATA----GAAGCTT--TTCA---TT---TGTGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAGAGATAA-GCCGTTTACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGATTTTTTTTTTTTTT---TTTTTTGCT--AAT-TCAAC-A----T--AGA-TAATCCAG-AAAATGCAC--CATG-TATGT-----CAACGACG-TT-TTAGCATT-T
Alignments
lowQualScore : 111 11 111 222222 1111 11111111 111 5555555555 11 1 22222222 2222222 111 111 1111 1 111 22222222 4444444444 1 1 1111 1111 222222 1 11 22222 1 111 1111 111 1111 444444444 111 1111 111 111 2 2222 444444444444444444 111 1111 11 11111 11 1 1 3333333 222 11111 333 11111 111 111 1111 111 111 11111 111 3333333333333333333 11111111 11 11111 222222222222222 111 111111 1111 1111111111 111 11111 33333333 11 111111 11111
lowQualScore : 77 5 5 77 5 5 5 000 5 66 111 6 222222 6 4444 88888888 3 3 1 111 7777777777 8 11 8 6 33333333 8 66 0 8 1 8 2222222 5 444 8 8 444 8 0 7777 6 8 444 8 3 99999999 8 8 5555555555 0 0 8 8 8888 6 6666 6 111111 6 99 3 55 888 44444 6 6 3 99 888 6 6 6 6 6 4444 99 6 111 77 4444 99 1 99 333333333 99 6 6 111 6 4444 6 99 222 000 11 5 5 99 6 6 6 9 0 0000 888 2 5 666666666666666666 77 111 5 2222 77 555 5 22 0 44444 11 7 1 5 0 8 8888888 1 5 3 8 444 66666 8 111 22222 111 77 555 6 6 4444 0 111 3 444 33333 6 99 111 1 8888888888888888888 7 99 6 5 55555555 666 0 22 99 5 77 5 5 5 66 999 4 777 4 4 3 4 4 2 11111 555555555555555 3 66 4 4 4 4 4 333 4 4 222222 4 0 0000 4444444444 5 5 5 5 77 555 5 5 1 5 5 55555 0 5 0 777 11111111 888 5 55 3 0 999 4 4 3 0 0 888 4 4 66 4 4 33 4 4 4 777 000000 4 4 4 4 4 55 4 2 55 3 55 00000 4 777 4 4
lowQualScore : .. . . .. . . . ... . .. ... . ...... . .... ........ . . . ... .......... . .. . . ........ . .. . . . . ....... . ... . . ... . . .... . . ... . . ........ . . .......... . . . . .... . .... . ...... . .. . .. ... ..... . . . .. ... . . . . . .... .. . ... .. .... .. . .. ......... .. . . ... . .... . .. ... ... .. . . .. . . . . . .... ... . . .................. .. ... . .... .. ... . .. . ..... .. . . . . . ....... . . . . ... ..... . ... ..... ... .. ... . . .... . ... . ... ..... . .. ... . ................... . .. . . ........ ... . .. .. . .. . . . .. ... . ... . . . . . . ..... ............... . .. . . . . . ... . . ...... . . .... .......... . . . . .. ... . . . . . ..... . . . ... ........ ... . .. . . ... . . . . . ... . . .. . . .. . . . ... ...... . . . . . .. . . .. . .. ..... . ... . .
lowQualScore : 99 7 7 99 7 7 7 000 0 00 333 7 888888 7 2222 77777777 2 2 0 777 9999999999 0 00 0 0 66666666 0 44 8 0 0 0 0000000 0 000 0 0 000 0 8 0000 0 0 000 0 2 22222222 0 0 0000000000 6 0 0 0 8888 7 0000 7 222222 7 22 3 88 777 55555 7 7 3 22 333 7 7 7 7 7 2222 22 7 777 77 2222 22 7 22 333333333 22 7 7 777 7 2222 7 22 888 000 11 7 7 22 7 7 7 8 0 8888 777 5 4 777777777777777777 99 666 7 1111 99 999 7 00 1 33333 99 1 4 7 8 0 2222222 4 6 2 0 222 00000 0 222 00000 000 99 777 7 7 2222 7 777 5 333 22222 7 22 777 0 3333333333333333333 3 22 7 7 00000000 111 7 33 33 7 11 7 0 0 99 222 4 888 4 4 6 4 4 2 11111 777777777777777 4 11 4 4 4 6 4 999 4 4 888888 4 4 6666 1111111111 7 7 7 7 44 000 7 0 4 0 0 99999 1 0 2 999 88888888 888 0 99 9 5 888 4 4 2 1 5 888 4 4 11 4 4 11 4 4 4 888 111111 0 0 0 0 0 55 0 4 55 6 55 00000 0 000 0 0
consensus : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CGTT-ATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTTT-C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Reference ( family-231 ) : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CGTT-ATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTTT-C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|1 : GACTGATTTAA--C-C-GTAACA--GG-GAC-A-TAAC---AA-TGGAAAA-CA---GGA-AAAAAAT--AA--AA-CTA----GT--AG---TTTTATTCTGATAT---CATTTTCTC---TCCGAA-TCTTCATG-AATATTATATA--GAAACTTTCAAAA-A-TGTGAAAATTC-AGGA-A-----CAATGCATCT-TATATC---CG-GATAGAA--TATAAATCTTATTTG-TAAAA-ATGGT---AGAAAACTTGC-C--A-C-AA-AACCG-TCA-TTT--ATTAAGC-GC-TGA-CGTTTATAAC-T-GAC-GCGT--C-CTCGG-CA-GC-GTCG--TTT-ACGG-TAGGAC-AACTTTT----CGTAT-C-CGTAA--TTTTATCAA--TGTGT-T-AGT-TGACATTA----CGT--GCATTCCGTT-GAT---GTTTTTT-GACGGCTTT-CTCATGG--ATGT-----GT-ACT---TT-TAACATAGGTGGA-TATA----GG-GCTTTGTTCAATCTTTTGTGGAAGAGTTTGG-AT-AAATTATTT--CAATTG-A-ATAAAAGAGATAAG--CGTT-ACGATTTT-T-GGGGAC-CTCTTAAAATTTCGGGGTAG-------------A---TTTTTTGCTAAAAT-TAAACGA----T--AGA-T-ATCCAG---AATGCAC-AAATGTTATGCAGGTTCAA--AGCTTT-TTAGTATTCTACT-TTAAC-GTTCTTTTTTC-GGCAAGT-GG-AAAAAGGCAACATA-GTAT-
gi|1 : TGTTTTT--AAATAGTCGTCGAACTGCAGTGCCGTTAT-AGAATTACATTCATTTTT---AAA-TGATTTATT-T-AAA--T-AATTGAA--AGTGTCAACTGT---ATTTGGA--A------ATATTT-G-GTATTTAACATC-T--TTACA-CTG-TTATGGAGCCTTT--AAGCCT-AGGTAAGGTC-GTGTTTTTT-TT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCATGAAAACGC-G-AT--G--TTTTCACCACA-CGCTGTACAACCG-ATTCT-GG-AA-CTCA-TTTTCAACAC-CATTTT----TT-----T----TT-CA-TTTTTTAA-CCTT-AAAA---TTCAA-TG-T--GTCCTTTT-AAAAAGCTCTAATTA-TTATA--TG---T-A-ATATATTG---CT-GAGAATGTTAATTTACAATTGCAAT-TG-GATTAATCTCTAATATCA---TCT-CGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAAC---ATC----T-C-CTGAAAC-C-TGCAGTA--C-TTTACCGCCGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgt-T--T---A-ATG-T-ATCGAA--TTT--A-GC-T-CG-TAAG-TCTGT--TTTT-----C---T-CTCCGTT-CACGAA-TT-TTCA-----CATGAA----T-G-ATCAG--TTT-CA--A-A-CGCT-TACAG-CG-ATT----G-AAACCCA-TTT------C-C-CTAT----TT-----T----TTGCA-TTT----A-CCTT--AAAC--TTCAA-AG-TACGTC--TTT-GAAAAGTG--CA--A-TTTTC--TGT--A-T-AACTAT-----CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCT-ATAATAGATT-T-TGT---CAGCATTT-C-CACGCC-AGC-A-T-CCAAACGGAGT----TGT-C-GGAAACC-TGTAG-A--A-TTTGGC--CGTGT-CCG---TG-----T-TACTAAGT-AG-AATCAGTGt
gi|11 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAGAA--ACAGAGAGAAAAAAT----TGAA-CTA----GT--TGCTTCTTTATTCTGATGT---CATTTTTTG---ta
gi|12 : aatttcagccaggtttATGCA-T-TG-C-TTGATCTCTAA---CA---T-T-CGTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAA---AAC----T-TAC-GAAAA-C-T---------------C--TGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGaatataactagtgttcaa
gi|13 : acGCA-T-TG-C-TTGATCTGTAAGAACA---T-T-CGT--CCAGCATTT-C-AACGCC-AGC-T-C-CCCAA---AAC----A-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGT-CCt
gi|14 : -T-CGT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGG-CCG--CCG-----T-AAC---GT-AG-AATCAGTGa
gi|15 : T-CT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CATGAA----T-G-AT-AG--TTTTCA--A-A-CGCC-TACAACAA-ATT---GGAAAACTCG-TTT------C-CTCTAT----TT-----T----ta
gi|16 : -TC-GT--TTCTTGCC-C---T-CTCAGCT-GTCG-G-TT-T--A-----CATGAA----CTG----AG--T----A--A-A-AACT-TCAAACCGCATTTACAG-AAAGTCA-TTT------C-gc
gi|17 : ctttgaAAATCGGGGTGA-------------T---TTT-TTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAA-AAAATGCAC-GAATGTTGTGT-----CAACGAACGTT-TTAGCATT-
gi|18 : -TACGTC-TT---AAAAA-----AATT------C--TG---A-T-AAATATTC---TC-GATG-TGTTAATTCATAAATGCG---TG-C-TTGATCTC
gi|19 : C----T-C-C-GAAAA-C-TGCAG-T--A-TTTACC--CGTGT-ACG--CCG-----T-AAC---GT-AG-AATCAGT
gi|2 : tGATTCTA--CGCAGTAACAACGG-GAC-AGTAAAGTAAAATG-AAAG-CACA---A-AAAGAGT--GA--AC-CTA----GTATTT---CTTTATTCTAGTATATTCATTTTATGATATCGAAA-TCTT--TCCA-CATA---TGT-GAA-CCGTCAAAATA-TGTCGAAAGTA-AGGA-GAGAGTCACTGC---TGT-TATCTTCCG-GATAGAAAATATAA----TATTGT-AAAAATATGGT---AGAAA-CTCAC-T--AAC-AACAAACGATCA-TTGATAC--AGC-GCGTGATCGTT-ATAA---TGAC-GT-C--C-TGCACACG-GCAGTCC--GTT-ACG--TAGGACCA-CTTTGT-C-CGTAT-CGCGTAA--TTTTATCA---TGT-T-T-A-T-TAA-ATTA----C-C--GCATTCCTTT-G-T---GTTTTTTTGAC----CT-GTCA-----ATG------AG-ATTA--TT-TAA-ATG---GGAATATAATGAGA-GCTT--T-CA--TTT---TGGTGAAGTTTGG-AT-AGATTATTTATC-ATTG-ATAGAAAAGAGATAAAGCCGTTGACG----T-AAGGACACTC-CTTAAAAA-TCGGGGTGA-------------T---TTTT--GCT--AAT-T-AAC-A----TTAAGA-T-ATCCAGGAAAATGCAC-AAATGTT-TGC-----CCA-AAAC-TTCTTAGTATT-TACTGTTAAAAG---TTATAT--GGCAAGTCGGGAAAA--GCAA---AAGTAT-TGCATA-CTCA-T-TTAGAA-AATAATTATTTTTC-AAAAGCCTGTTTTT--AA-TAGTCGCC--ACTAGATTCACGTT-TTAGA----CATTCATTTTT---AAAATGATTTATT-A-AAAAATGAAT-GAACAAGGATCAACTGTTACAGTTGTA--AT-----ATGTCA-T-AT--T--ACA-C-TGTT---A-ATG-T-ATGGC-CCTTTTAA-ACCT-AG-TAAG-TC-GT--TTTTT--T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CATGAA----C-G-AT-GGTTTTTTCA--A-CTCGCT-TAC-ACCA-TTT---GG-AAACTCA-TTT------CACTCAAT----TT-----TTTTGTT-CATTTTTT-AA-CCTT-AAAAA--TTCAAGTG-TATGTC-TTTTAAAAAAGTT--AATTA-TTTTT--TATGTATA-TAATATTGGGCCC-GAGA-TGTTAATTTACAAATGCATT-TGTT-TTGATCTCT-ATATCA---T-T-CGT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAA---ATC----TCT-C-GAAAA-CATGCAA-AGTA-TTTACC--CGTGT-CAGGCCCG-----TAAAC---GTCAG-AATCAG
gi|20 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---ACAT
gi|21 : taattttgattcGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|3 : AGACTGATTCTA--T-C-GTAACA--GG-ACCTA-TAAG---AAATGGAAAA-TACAGGAA-AAAAAACTAAATAAAACTG----AT--TG---TTT-GT----ATAT---CATTTTAC--------AA-TCTT--TG-A-TATT---TACTGAA-CTTTCAAAATA-TGTAAAACTTC-GGAACA-----CACTGC---T-T-TATC----G-GATTGAAAATATAA----TATTTT-GAAAA-ATGGT---AGAAA-CTCGC----A-C-AA-AAACG-TCA------AT--AGCAGCGTAG-CGTT-ATAATATTGAC-GC-T--C-TCC----G-GT-GTCC--ATT-ACG--TAGAGC-A-CTTT---C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGT--GCATT-CGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTCTTTGATGATTA--TT-T-A-ATG---GGA-TGTA----GA-GCTT--TTCA--TTT---TGGAAAAGTTT-G-ATAAAATTATTT--C-ATTG-A-ATAAAA-AGATAAAGCCGTT-ACG----TGA-GGA-ACTCTCTTAAAACTTCGTAGTGA-------------TATCTTTTTTGCT--AATAT-AAC-A----T--AGA-G-ATTC-G-AAAATGCAC-AAATGTTATGC-----CAACAAAC-TT-TGAGCATT-T--T-TTAA--G----TATATCAGGCAAGTCAG-AAAA---CAA---A-GTAT-TACA---CTCA-T-T-AGAA-A-CAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCGC---ACATGAATCACA-T-T-AAA----CATTTATTTTT----AATTGATTAATA-A-AAGA-T-AAT-GAA--AGAGTCAACTTT---AATGATA--A------AT-TTA-T-AT-TT--ACA-C-C--T---ATATGAT-ATTGAACTTTT--A-GGCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATG-------------------------A-A-CGCT-TACAACCA-ATT---GG-ACACTCA-TTT------C-GTCTAT----TT-----T----TG-CA-TATTT-AA-CCCT-AAAAAT-TTCAA-TG-TA-GTC-TTTT-AAAAAGTG--AATTA-TTTTG--TA---AGA-AAATATTG---CT-GATA-TATTTATTAATAATTGCA-TATG-C-TTGATCT-TAATAACA---T-T-TGT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAA---AACTCAGT-T-C-GAAAA-C-TGCAG-A--A-TTTTCC--CGTGT-CCG--CCG-----T-AAA---GT-AGAAATCAGTGatga
gi|4 : taGACTGATTCTA--C-G-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA--ACAG--A-AAAAAAT--AA-AAA-CTA----GT--TG-------------ATAT---CATTTTTCG-------AA-TCTT--TG-A-TATT---TG---AA-CTTTCC---TAGTGTAAAAAATC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTTTAAAAA-ATGGT---AGAAA-CTCGCAC--A---AA-AAACG-TCA-TT---A----GTATCGTAA-CGTT-ATA---TTGAC-GC-T--CCTCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTT--C-CGTAT-C-CG-AA--TTGTATCA---TGT-T-T-AGT-TAA-ATTA----CGT--GCATTCCGTT-GAT---ATTTTTT-GAC----TT-GTCATTG--ATG---------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGTGAAAGTCTGA-AT-AAATTATTT--T-ATTG-A-ATAAAAGAGATAAAGCCGGT-ACA----T-A-GGACACTCTCTTAAAAAATCGGGATGA-----------------TTTTTTGCT--AAT-G-AAC-A----T--AGA-T-ATCCAG-AAAATGCAA-AAATGTTATGC-----CAACAAACATT-TTAGCATT-TACT-TTAA--A---GTGTATCAGGCAAGTCGG-AAAA---CAA---A-TTAT-TGCA---CTCATT-T-AGAAGA-TAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCGC---ACTAGAATCACGT
gi|5 : gcT---TTGAAAAGTTTGG-GT-AAATTACTT--C-ATTG-A-ATAAA-GAGATAG-GTCATTCACGC---T-A-GGACATTCTCTGACAAAATCGGGGTG------------------CTTTTTATT--AAT-T-AAC-AACATT--AGACT-ATCCAG-AAAATGCACCGAATGT-AT--------------C-TTATTAGCATT-CAGT-CTAA--A---GTGTATCAGGCGAGTTTG-GAAA--ACAT---G-GTATATGCAGCACTCA-TCT-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA----ACTAGAATCATGTT-T-ATA----TATCAATTTTT---AAAATGATTAAGT-T-AA----------------AGTCAACTGT---AATTGTATTACCGGGTATGT---T-ATATT--ACA-C-TC-T---A-ATC-A-ATGGGACCTTTA-A-GCCT--T-TAAG-TC-GT--TTCTT-CTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CATGAA----T-GAAT-AAGTTTTTCA--A-A-CGCT-TAC-ACAG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TG-CA--TTTT-AA-CGTT-TAACA--CTCAA-TGTTACGTC-TTTC-AAAAA--------TA-TCGTA--T--------AAATATTG----C-GACG-TG
gi|6 : TTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCGC---ACTAGAA-CACGTT-T-AGG----CGTTCATTTTTTTTAAAATGATTAATT-ATAAAA-T-AAT-GAA--AGAGTCAATTGT---AATGATG--A-------T-TTA-TTATATT--ACA-C-T--T---T-ATG-T-A--GGACCTC---A-GCCTTAG-TAAG-TC-GT--TATTT-CT-C---T-C---GTT-TACGAG-TT-TTCT-----CATAAA----T-G-A--AG--TTTCAA--A-A-CGCT-TTCCAACG-ATT---GC-GAAGTAA-TTT------T-CTGTAT----TTCCTTTT----TT-CA-TTTTT-AAACCTT-AAAAAATTCCAA-TG-TACTTC-TTTT-AAAA--TT--AATTA-TTTTTATTG---A-ATAAATATTG---CCCAAT--TGTTAATT-ATAACTGCA-T-TG-C-TTACTTTCTAATAATA---T-TTCGT--CC-GCATTT-T-AACGCCG--C-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCTG-A--ATTTTTCC--CGTGTCCCG--CCGTTCGTT-AA----GT-AG-AATCAGTG
gi|7 : tcatATTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGG----CGTTCATTTTT---AAAATGATTAATTAT-AAAA-T-AAT-GAA--AGAGTCAATTGT---AATGAT---G------AT-TTATT-ATATT--ACA-CTT--T---A-ATG-T-ATG--ACATTTC-A-GCCT-AG-TAAG-TC-GT--TATT---T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAA----T-G-AT-AG--TTTTCA--A-A-CGCT-TCCAACCG-ATT---GG-AAAGTCATTTT------C-CTGTGTTTCCTT-----T----TT-CA-TTTTA-AA-CCTTAAAAAA--TTCAA-TG-TACTTC-TTTT-TAAAAGTG--AATTATTTTTA--TG---A-ATAAATATTG---CC-AATA-TGTTAATTTATAAATGCA-T-TG-C-TTACTCTCTAATAATA---T-T-CGT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTCCC--CGTGT-CTG--CCG-----T-AAA---GT-AG-AATCAGTG
gi|8 : tcGACTGATTCTGACC-C-GTAACA--AGCGAC-A-TAAA---AA-TGGAAAAACACAAGGA-AAAAAAT--AATAAA-ATATATTGT--TC---TTATATTCTGATAT---CATTT--CG-------AACTCTT--TG-ACTATT---TG--AAA-CTTTC-AAATT-TGTAAAAATTCAAGGA-A-----CA-TGC---T-T-TATC---CGAAAAAGAAAAGATAA----TATTTTGAAAAG-ATGATTAAAAAAA-CT-GC-CGTA-CAAA-AAACC-TCAGGT---GG--AGTAAC--GA-CGTT-ATAAC--TGAC-GC-TC-C-TCC---CA-GC-GTCCCGGTTAACGATTAGGAC-A-CTTTTC-CGCATATAC-CG-AATGTTCTATCAGCCTGT-TCT-AGTATCA-ATTACGATCGC--GCATTCCGTT-GAT---TTTTTAA-AAC----TTCGTCATTG--ATG---------ATCAGTCT-TAA-CTG---GCG-TGGA-----A-GCTT--TTCA--CTT---TGTGAAAATGTGGCAT-AA
gi|9 : t-TTGACCGC-TTCC-TCC---CGAGC-GCCC--GTTGACG--TAGGAC-T-TTTTTTTC-CGTAT-T-CG-AA--TTTTATCA---TGT-T-TTAGT-GAA-ATTA----AGCTTGCATTCCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCT-----AT-AATA--TTGTAA-ATG---GGA-TATA----GAAGCTT--TTCA---TT---TGTGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAGAGATAA-GCCGTTTACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGATTTTTTTTTTTTTT---TTTTTTGCT--AAT-TCAAC-A----T--AGA-TAATCCAG-AAAATGCAC--CATG-TATGT-----CAACGACG-TT-TTAGCATT-T
Alignments
lowQualScore : 111 11 111 222222 1111 11111111 111 5555555555 11 1 22222222 2222222 111 111 1111 1 111 22222222 4444444444 1 1 1111 1111 222222 1 11 22222 1 111 1111 111 1111 444444444 111 1111 111 111 2 2222 444444444444444444 111 1111 11 11111 11 1 1 3333333 222 11111 333 11111 111 111 1111 111 111 11111 111 3333333333333333333 11111111 11 11111 222222222222222 111 111111 1111 1111111111 111 11111 33333333 11 111111 11111
lowQualScore : 77 5 5 77 5 5 5 000 5 66 111 6 222222 6 4444 88888888 3 3 1 111 7777777777 8 11 8 6 33333333 8 66 0 8 1 8 2222222 5 444 8 8 444 8 0 7777 6 8 444 8 3 99999999 8 8 5555555555 0 0 8 8 8888 6 6666 6 111111 6 99 3 55 888 44444 6 6 3 99 888 6 6 6 6 6 4444 99 6 111 77 4444 99 1 99 333333333 99 6 6 111 6 4444 6 99 222 000 11 5 5 99 6 6 6 9 0 0000 888 2 5 666666666666666666 77 111 5 2222 77 555 5 22 0 44444 11 7 1 5 0 8 8888888 1 5 3 8 444 66666 8 111 22222 111 77 555 6 6 4444 0 111 3 444 33333 6 99 111 1 8888888888888888888 7 99 6 5 55555555 666 0 22 99 5 77 5 5 5 66 999 4 777 4 4 3 4 4 2 11111 555555555555555 3 66 4 4 4 4 4 333 4 4 222222 4 0 0000 4444444444 5 5 5 5 77 555 5 5 1 5 5 55555 0 5 0 777 11111111 888 5 55 3 0 999 4 4 3 0 0 888 4 4 66 4 4 33 4 4 4 777 000000 4 4 4 4 4 55 4 2 55 3 55 00000 4 777 4 4
lowQualScore : .. . . .. . . . ... . .. ... . ...... . .... ........ . . . ... .......... . .. . . ........ . .. . . . . ....... . ... . . ... . . .... . . ... . . ........ . . .......... . . . . .... . .... . ...... . .. . .. ... ..... . . . .. ... . . . . . .... .. . ... .. .... .. . .. ......... .. . . ... . .... . .. ... ... .. . . .. . . . . . .... ... . . .................. .. ... . .... .. ... . .. . ..... .. . . . . . ....... . . . . ... ..... . ... ..... ... .. ... . . .... . ... . ... ..... . .. ... . ................... . .. . . ........ ... . .. .. . .. . . . .. ... . ... . . . . . . ..... ............... . .. . . . . . ... . . ...... . . .... .......... . . . . .. ... . . . . . ..... . . . ... ........ ... . .. . . ... . . . . . ... . . .. . . .. . . . ... ...... . . . . . .. . . .. . .. ..... . ... . .
lowQualScore : 99 7 7 99 7 7 7 000 0 00 333 7 888888 7 2222 77777777 2 2 0 777 9999999999 0 00 0 0 66666666 0 44 8 0 0 0 0000000 0 000 0 0 000 0 8 0000 0 0 000 0 2 22222222 0 0 0000000000 6 0 0 0 8888 7 0000 7 222222 7 22 3 88 777 55555 7 7 3 22 333 7 7 7 7 7 2222 22 7 777 77 2222 22 7 22 333333333 22 7 7 777 7 2222 7 22 888 000 11 7 7 22 7 7 7 8 0 8888 777 5 4 777777777777777777 99 666 7 1111 99 999 7 00 1 33333 99 1 4 7 8 0 2222222 4 6 2 0 222 00000 0 222 00000 000 99 777 7 7 2222 7 777 5 333 22222 7 22 777 0 3333333333333333333 3 22 7 7 00000000 111 7 33 33 7 11 7 0 0 99 222 4 888 4 4 6 4 4 2 11111 777777777777777 4 11 4 4 4 6 4 999 4 4 888888 4 4 6666 1111111111 7 7 7 7 44 000 7 0 4 0 0 99999 1 0 2 999 88888888 888 0 99 9 5 888 4 4 2 1 5 888 4 4 11 4 4 11 4 4 4 888 111111 0 0 0 0 0 55 0 4 55 6 55 00000 0 000 0 0
consensus : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CGTT-ATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTTT-C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Reference ( family-231 ) : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CGTT-ATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTTT-C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|1 : GACTGATTTAA--C-C-GTAACA--GG-GAC-A-TAAC---AA-TGGAAAA-CA---GGA-AAAAAAT--AA--AA-CTA----GT--AG---TTTTATTCTGATAT---CATTTTCTC---TCCGAA-TCTTCATG-AATATTATATA--GAAACTTTCAAAA-A-TGTGAAAATTC-AGGA-A-----CAATGCATCT-TATATC---CG-GATAGAA--TATAAATCTTATTTG-TAAAA-ATGGT---AGAAAACTTGC-C--A-C-AA-AACCG-TCA-TTT--ATTAAGC-GC-TGA-CGTTTATAAC-T-GAC-GCGT--C-CTCGG-CA-GC-GTCG--TTT-ACGG-TAGGAC-AACTTTT----CGTAT-C-CGTAA--TTTTATCAA--TGTGT-T-AGT-TGACATTA----CGT--GCATTCCGTT-GAT---GTTTTTT-GACGGCTTT-CTCATGG--ATGT-----GT-ACT---TT-TAACATAGGTGGA-TATA----GG-GCTTTGTTCAATCTTTTGTGGAAGAGTTTGG-AT-AAATTATTT--CAATTG-A-ATAAAAGAGATAAG--CGTT-ACGATTTT-T-GGGGAC-CTCTTAAAATTTCGGGGTAG-------------A---TTTTTTGCTAAAAT-TAAACGA----T--AGA-T-ATCCAG---AATGCAC-AAATGTTATGCAGGTTCAA--AGCTTT-TTAGTATTCTACT-TTAAC-GTTCTTTTTTC-GGCAAGT-GG-AAAAAGGCAACATA-GTAT-
gi|1 : TGTTTTT--AAATAGTCGTCGAACTGCAGTGCCGTTAT-AGAATTACATTCATTTTT---AAA-TGATTTATT-T-AAA--T-AATTGAA--AGTGTCAACTGT---ATTTGGA--A------ATATTT-G-GTATTTAACATC-T--TTACA-CTG-TTATGGAGCCTTT--AAGCCT-AGGTAAGGTC-GTGTTTTTT-TT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCATGAAAACGC-G-AT--G--TTTTCACCACA-CGCTGTACAACCG-ATTCT-GG-AA-CTCA-TTTTCAACAC-CATTTT----TT-----T----TT-CA-TTTTTTAA-CCTT-AAAA---TTCAA-TG-T--GTCCTTTT-AAAAAGCTCTAATTA-TTATA--TG---T-A-ATATATTG---CT-GAGAATGTTAATTTACAATTGCAAT-TG-GATTAATCTCTAATATCA---TCT-CGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAAC---ATC----T-C-CTGAAAC-C-TGCAGTA--C-TTTACCGCCGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgt-T--T---A-ATG-T-ATCGAA--TTT--A-GC-T-CG-TAAG-TCTGT--TTTT-----C---T-CTCCGTT-CACGAA-TT-TTCA-----CATGAA----T-G-ATCAG--TTT-CA--A-A-CGCT-TACAG-CG-ATT----G-AAACCCA-TTT------C-C-CTAT----TT-----T----TTGCA-TTT----A-CCTT--AAAC--TTCAA-AG-TACGTC--TTT-GAAAAGTG--CA--A-TTTTC--TGT--A-T-AACTAT-----CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCT-ATAATAGATT-T-TGT---CAGCATTT-C-CACGCC-AGC-A-T-CCAAACGGAGT----TGT-C-GGAAACC-TGTAG-A--A-TTTGGC--CGTGT-CCG---TG-----T-TACTAAGT-AG-AATCAGTGt
gi|11 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAGAA--ACAGAGAGAAAAAAT----TGAA-CTA----GT--TGCTTCTTTATTCTGATGT---CATTTTTTG---ta
gi|12 : aatttcagccaggtttATGCA-T-TG-C-TTGATCTCTAA---CA---T-T-CGTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAA---AAC----T-TAC-GAAAA-C-T---------------C--TGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGaatataactagtgttcaa
gi|13 : acGCA-T-TG-C-TTGATCTGTAAGAACA---T-T-CGT--CCAGCATTT-C-AACGCC-AGC-T-C-CCCAA---AAC----A-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGT-CCt
gi|14 : -T-CGT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGG-CCG--CCG-----T-AAC---GT-AG-AATCAGTGa
gi|15 : T-CT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CATGAA----T-G-AT-AG--TTTTCA--A-A-CGCC-TACAACAA-ATT---GGAAAACTCG-TTT------C-CTCTAT----TT-----T----ta
gi|16 : -TC-GT--TTCTTGCC-C---T-CTCAGCT-GTCG-G-TT-T--A-----CATGAA----CTG----AG--T----A--A-A-AACT-TCAAACCGCATTTACAG-AAAGTCA-TTT------C-gc
gi|17 : ctttgaAAATCGGGGTGA-------------T---TTT-TTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAA-AAAATGCAC-GAATGTTGTGT-----CAACGAACGTT-TTAGCATT-
gi|18 : -TACGTC-TT---AAAAA-----AATT------C--TG---A-T-AAATATTC---TC-GATG-TGTTAATTCATAAATGCG---TG-C-TTGATCTC
gi|19 : C----T-C-C-GAAAA-C-TGCAG-T--A-TTTACC--CGTGT-ACG--CCG-----T-AAC---GT-AG-AATCAGT
gi|2 : tGATTCTA--CGCAGTAACAACGG-GAC-AGTAAAGTAAAATG-AAAG-CACA---A-AAAGAGT--GA--AC-CTA----GTATTT---CTTTATTCTAGTATATTCATTTTATGATATCGAAA-TCTT--TCCA-CATA---TGT-GAA-CCGTCAAAATA-TGTCGAAAGTA-AGGA-GAGAGTCACTGC---TGT-TATCTTCCG-GATAGAAAATATAA----TATTGT-AAAAATATGGT---AGAAA-CTCAC-T--AAC-AACAAACGATCA-TTGATAC--AGC-GCGTGATCGTT-ATAA---TGAC-GT-C--C-TGCACACG-GCAGTCC--GTT-ACG--TAGGACCA-CTTTGT-C-CGTAT-CGCGTAA--TTTTATCA---TGT-T-T-A-T-TAA-ATTA----C-C--GCATTCCTTT-G-T---GTTTTTTTGAC----CT-GTCA-----ATG------AG-ATTA--TT-TAA-ATG---GGAATATAATGAGA-GCTT--T-CA--TTT---TGGTGAAGTTTGG-AT-AGATTATTTATC-ATTG-ATAGAAAAGAGATAAAGCCGTTGACG----T-AAGGACACTC-CTTAAAAA-TCGGGGTGA-------------T---TTTT--GCT--AAT-T-AAC-A----TTAAGA-T-ATCCAGGAAAATGCAC-AAATGTT-TGC-----CCA-AAAC-TTCTTAGTATT-TACTGTTAAAAG---TTATAT--GGCAAGTCGGGAAAA--GCAA---AAGTAT-TGCATA-CTCA-T-TTAGAA-AATAATTATTTTTC-AAAAGCCTGTTTTT--AA-TAGTCGCC--ACTAGATTCACGTT-TTAGA----CATTCATTTTT---AAAATGATTTATT-A-AAAAATGAAT-GAACAAGGATCAACTGTTACAGTTGTA--AT-----ATGTCA-T-AT--T--ACA-C-TGTT---A-ATG-T-ATGGC-CCTTTTAA-ACCT-AG-TAAG-TC-GT--TTTTT--T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CATGAA----C-G-AT-GGTTTTTTCA--A-CTCGCT-TAC-ACCA-TTT---GG-AAACTCA-TTT------CACTCAAT----TT-----TTTTGTT-CATTTTTT-AA-CCTT-AAAAA--TTCAAGTG-TATGTC-TTTTAAAAAAGTT--AATTA-TTTTT--TATGTATA-TAATATTGGGCCC-GAGA-TGTTAATTTACAAATGCATT-TGTT-TTGATCTCT-ATATCA---T-T-CGT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAA---ATC----TCT-C-GAAAA-CATGCAA-AGTA-TTTACC--CGTGT-CAGGCCCG-----TAAAC---GTCAG-AATCAG
gi|20 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---ACAT
gi|21 : taattttgattcGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|3 : AGACTGATTCTA--T-C-GTAACA--GG-ACCTA-TAAG---AAATGGAAAA-TACAGGAA-AAAAAACTAAATAAAACTG----AT--TG---TTT-GT----ATAT---CATTTTAC--------AA-TCTT--TG-A-TATT---TACTGAA-CTTTCAAAATA-TGTAAAACTTC-GGAACA-----CACTGC---T-T-TATC----G-GATTGAAAATATAA----TATTTT-GAAAA-ATGGT---AGAAA-CTCGC----A-C-AA-AAACG-TCA------AT--AGCAGCGTAG-CGTT-ATAATATTGAC-GC-T--C-TCC----G-GT-GTCC--ATT-ACG--TAGAGC-A-CTTT---C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGT--GCATT-CGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTCTTTGATGATTA--TT-T-A-ATG---GGA-TGTA----GA-GCTT--TTCA--TTT---TGGAAAAGTTT-G-ATAAAATTATTT--C-ATTG-A-ATAAAA-AGATAAAGCCGTT-ACG----TGA-GGA-ACTCTCTTAAAACTTCGTAGTGA-------------TATCTTTTTTGCT--AATAT-AAC-A----T--AGA-G-ATTC-G-AAAATGCAC-AAATGTTATGC-----CAACAAAC-TT-TGAGCATT-T--T-TTAA--G----TATATCAGGCAAGTCAG-AAAA---CAA---A-GTAT-TACA---CTCA-T-T-AGAA-A-CAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCGC---ACATGAATCACA-T-T-AAA----CATTTATTTTT----AATTGATTAATA-A-AAGA-T-AAT-GAA--AGAGTCAACTTT---AATGATA--A------AT-TTA-T-AT-TT--ACA-C-C--T---ATATGAT-ATTGAACTTTT--A-GGCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATG-------------------------A-A-CGCT-TACAACCA-ATT---GG-ACACTCA-TTT------C-GTCTAT----TT-----T----TG-CA-TATTT-AA-CCCT-AAAAAT-TTCAA-TG-TA-GTC-TTTT-AAAAAGTG--AATTA-TTTTG--TA---AGA-AAATATTG---CT-GATA-TATTTATTAATAATTGCA-TATG-C-TTGATCT-TAATAACA---T-T-TGT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAA---AACTCAGT-T-C-GAAAA-C-TGCAG-A--A-TTTTCC--CGTGT-CCG--CCG-----T-AAA---GT-AGAAATCAGTGatga
gi|4 : taGACTGATTCTA--C-G-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA--ACAG--A-AAAAAAT--AA-AAA-CTA----GT--TG-------------ATAT---CATTTTTCG-------AA-TCTT--TG-A-TATT---TG---AA-CTTTCC---TAGTGTAAAAAATC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTTTAAAAA-ATGGT---AGAAA-CTCGCAC--A---AA-AAACG-TCA-TT---A----GTATCGTAA-CGTT-ATA---TTGAC-GC-T--CCTCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTT--C-CGTAT-C-CG-AA--TTGTATCA---TGT-T-T-AGT-TAA-ATTA----CGT--GCATTCCGTT-GAT---ATTTTTT-GAC----TT-GTCATTG--ATG---------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGTGAAAGTCTGA-AT-AAATTATTT--T-ATTG-A-ATAAAAGAGATAAAGCCGGT-ACA----T-A-GGACACTCTCTTAAAAAATCGGGATGA-----------------TTTTTTGCT--AAT-G-AAC-A----T--AGA-T-ATCCAG-AAAATGCAA-AAATGTTATGC-----CAACAAACATT-TTAGCATT-TACT-TTAA--A---GTGTATCAGGCAAGTCGG-AAAA---CAA---A-TTAT-TGCA---CTCATT-T-AGAAGA-TAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCGC---ACTAGAATCACGT
gi|5 : gcT---TTGAAAAGTTTGG-GT-AAATTACTT--C-ATTG-A-ATAAA-GAGATAG-GTCATTCACGC---T-A-GGACATTCTCTGACAAAATCGGGGTG------------------CTTTTTATT--AAT-T-AAC-AACATT--AGACT-ATCCAG-AAAATGCACCGAATGT-AT--------------C-TTATTAGCATT-CAGT-CTAA--A---GTGTATCAGGCGAGTTTG-GAAA--ACAT---G-GTATATGCAGCACTCA-TCT-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA----ACTAGAATCATGTT-T-ATA----TATCAATTTTT---AAAATGATTAAGT-T-AA----------------AGTCAACTGT---AATTGTATTACCGGGTATGT---T-ATATT--ACA-C-TC-T---A-ATC-A-ATGGGACCTTTA-A-GCCT--T-TAAG-TC-GT--TTCTT-CTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CATGAA----T-GAAT-AAGTTTTTCA--A-A-CGCT-TAC-ACAG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TG-CA--TTTT-AA-CGTT-TAACA--CTCAA-TGTTACGTC-TTTC-AAAAA--------TA-TCGTA--T--------AAATATTG----C-GACG-TG
gi|6 : TTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCGC---ACTAGAA-CACGTT-T-AGG----CGTTCATTTTTTTTAAAATGATTAATT-ATAAAA-T-AAT-GAA--AGAGTCAATTGT---AATGATG--A-------T-TTA-TTATATT--ACA-C-T--T---T-ATG-T-A--GGACCTC---A-GCCTTAG-TAAG-TC-GT--TATTT-CT-C---T-C---GTT-TACGAG-TT-TTCT-----CATAAA----T-G-A--AG--TTTCAA--A-A-CGCT-TTCCAACG-ATT---GC-GAAGTAA-TTT------T-CTGTAT----TTCCTTTT----TT-CA-TTTTT-AAACCTT-AAAAAATTCCAA-TG-TACTTC-TTTT-AAAA--TT--AATTA-TTTTTATTG---A-ATAAATATTG---CCCAAT--TGTTAATT-ATAACTGCA-T-TG-C-TTACTTTCTAATAATA---T-TTCGT--CC-GCATTT-T-AACGCCG--C-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCTG-A--ATTTTTCC--CGTGTCCCG--CCGTTCGTT-AA----GT-AG-AATCAGTG
gi|7 : tcatATTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGG----CGTTCATTTTT---AAAATGATTAATTAT-AAAA-T-AAT-GAA--AGAGTCAATTGT---AATGAT---G------AT-TTATT-ATATT--ACA-CTT--T---A-ATG-T-ATG--ACATTTC-A-GCCT-AG-TAAG-TC-GT--TATT---T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAA----T-G-AT-AG--TTTTCA--A-A-CGCT-TCCAACCG-ATT---GG-AAAGTCATTTT------C-CTGTGTTTCCTT-----T----TT-CA-TTTTA-AA-CCTTAAAAAA--TTCAA-TG-TACTTC-TTTT-TAAAAGTG--AATTATTTTTA--TG---A-ATAAATATTG---CC-AATA-TGTTAATTTATAAATGCA-T-TG-C-TTACTCTCTAATAATA---T-T-CGT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTCCC--CGTGT-CTG--CCG-----T-AAA---GT-AG-AATCAGTG
gi|8 : tcGACTGATTCTGACC-C-GTAACA--AGCGAC-A-TAAA---AA-TGGAAAAACACAAGGA-AAAAAAT--AATAAA-ATATATTGT--TC---TTATATTCTGATAT---CATTT--CG-------AACTCTT--TG-ACTATT---TG--AAA-CTTTC-AAATT-TGTAAAAATTCAAGGA-A-----CA-TGC---T-T-TATC---CGAAAAAGAAAAGATAA----TATTTTGAAAAG-ATGATTAAAAAAA-CT-GC-CGTA-CAAA-AAACC-TCAGGT---GG--AGTAAC--GA-CGTT-ATAAC--TGAC-GC-TC-C-TCC---CA-GC-GTCCCGGTTAACGATTAGGAC-A-CTTTTC-CGCATATAC-CG-AATGTTCTATCAGCCTGT-TCT-AGTATCA-ATTACGATCGC--GCATTCCGTT-GAT---TTTTTAA-AAC----TTCGTCATTG--ATG---------ATCAGTCT-TAA-CTG---GCG-TGGA-----A-GCTT--TTCA--CTT---TGTGAAAATGTGGCAT-AA
gi|9 : t-TTGACCGC-TTCC-TCC---CGAGC-GCCC--GTTGACG--TAGGAC-T-TTTTTTTC-CGTAT-T-CG-AA--TTTTATCA---TGT-T-TTAGT-GAA-ATTA----AGCTTGCATTCCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCT-----AT-AATA--TTGTAA-ATG---GGA-TATA----GAAGCTT--TTCA---TT---TGTGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAGAGATAA-GCCGTTTACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGATTTTTTTTTTTTTT---TTTTTTGCT--AAT-TCAAC-A----T--AGA-TAATCCAG-AAAATGCAC--CATG-TATGT-----CAACGACG-TT-TTAGCATT-T
blockSeqs : AC G A AC C T G GTA A AC GAG G TAAATA A TATT TGCTTC T T G ATT ATGATATCGA C . C C TACTG . AA G G A GAGAGT C . G . TTC A . T T TAA . C CGTACA C A TTGATAC A G T . ATAT C TTC C ACACG A CG A AT CA TCCG A G T TG GCC . C T A . CGAT TT T TTT TG . CG T TC TCTTTGATG GT G . . A ATGA A . T . GT C A AT . C T A G C AA C A ATTTTTTTTTTTTTT . AT . ACAT TA CT G CG . CG G C . G AAGT A A C G G AA A GCA TTT GA TT C . T . TTT A AT AAATG . CA TAC T ATTACCGGGTATGTT A . . T GTTA AT AA TA . TA . . T . TGC C ACG G . A . . T . TGAATAAGT T . . T . A C TAC A T . A TTCC CCTTTT G T . A AA AAT G T C . A GTG T TAT ATGTATA GGC C A T TT T . A GAT . T AT T . CA A A . CGG TCAGT A . C A . GT T G . C GC TTCGT A TAA C A
blockSeqs : . . . . . . . . A C GGA . AATA . . ATTTC T T A . TCG . . . . TGTG . AA . T . CA C . . . . . . G . . . C TAAC . . GGTGG A G . . AC . TC . CGA . . G . A TTTC . . . . . . . . . . . . . . G . G T . TAT . . . . . . . . T . GA . . . . . . A C . GA C T ATATC . TC . . . TA . G . CA A A . . AG A A C . A A . . TCT A . . . . . . T AT GAT . . . G AATATGTCAT A . . . TAT T AA A . C . . . . TC . . . . G . . A . CGATGGTT T . . . . A . . . . . . . TTTTG . . . . A AT . . C . . GTT . C GTAT . . G C TA . . A . . . . . . CG . . . . TG . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . A T AGG . AAA . . TGT T T G . AC . . . . TGA . C . A . A C . . . . . . . . . . C ACA . . TTA A G . . A . C . CG . . . . A GTC . . . . . . . . . . . . . . G . G T . AG . . . . . . . . C . TG . . . . . . A T . A C A AT . T . . . T . A . CA . . . . AG G A C . . A . . TT A . . . . . . A A AAT . . . T AAATTTAT A . . . CTA T GA C . A . . . . TC . . . . A . . T . TGATCAG T . . . . A . . . . . . . T . . . . A C . . T . . GTG . C AAGA . . A T T . . A . . . . . . CA . . . . TC . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . A . G . TG . . TCT . . . . CG . . . . TG . A . T . A . . . . . . . . . . . . AC . . AT . . . . T . T . CA . . . . A TC . . . . . . . . . . . . . . A . G C . . . . . . . . . . C . GA . . . . . . . . . A C A AT . T . . . T . A . CG . . . . G G . T . . G . . . . . . . A A AAT . . . G GATTTATT . . . . TA A GA . . A . . . . TC . . . . A . . T . TGATAG C . . . . A . . . . . . . T . . . . T A . . C . . GTG . T GAAT . . A A T . . A . . . . . . CG . . . . T . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . A . . . GA . . TG . . . . . T . G . . . . T C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TG . . . . . . . . . A . A A . G . . . G . A . A . . . . . . . . . A T . . . . G GATTTATT . . . . TT T C . . A . . . . TC . . . . A . . A . TGATAG T . . . . C . . . . . . . T . . . . A A . . C . . TT . G GAAT . . G T T . . A . . . . . . C . . . . A . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . TG . . . . . T . . . T . . . . . . . . . . TA T A . . . . . . . T . . . . A . . T . CTGAG . . . . . A . . . . . . . T . . . . . A . . C . . . . A GAT . . A . T . . . . . . . . . C . . . . T . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . T . TGAAG . . . . . . . . . . . . . T . . . . . . A . . . . T . . . . . . . . . G . . . . T . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . T . . . . . . . C . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : C* GGG CG******** ** TGG***** *** **** TTG******* AC** T*** CG**** ** A** TC*** *** **** TNT****** *** ** C** *** **** ** T** ***** CG AG***** G** A**** *** **** AAT** GATTTATT*********** ** TA****** T** ** ***** TGATAG********* ** *** ****** A** GTG** GAAT**** A* T** **
originalCons : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CATTTTNCG---TC--AA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CTCGC-C--A-C-AA-AAACG-TCA-TT---AT--AGCAGCGTGA-CGTT-ATAAC-TTGAC-GC-T--C-TCC---CG-GC-GTCC--GTT-ACG--TAGGAC-A-CTTTTT-C-CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-----AT-ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAA--G---NTGTATCAGGCAAGTCGG-AAAA--GCAA---A-GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAA-T-AAT-GAA--AGAGTCAACTGT---AATNGTA--A------ATGTTA-T-ATATT--ACA-C-T--T---A-ATG-T-ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----C-G-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA-TTTTN--TG---A-A-AAATATTG---CC-GATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
finalCons : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAAC-ACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CATTTTCG--------AA-TCTT--TG-A-TATTTGG-----AA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTT-AAAAA-ATGGT---AGAAA-CTCGC-C--A-C-AA-AAACG-TCATTG-------AGCAGCGTGA-CGTT-ATAAC--TGAC-GCT---C-TCCCG----GC-GTCC--GTT-ACG--TAGGACA--CTTTTC---CGTAT-C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTNT------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCAC--TT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-A-GGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AATT--AAC-A----T--AGA-T-ATCCAG-AAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TTAAAG-----TGTATCAGGCAAGTCGG-AAAAG--CAAA----GTAT-TGCA---CTCA-T-T-AGAA-A-TAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCGC---ACTAGAATCACGTT-T-AGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAAT--AAT-GAA--AGAGTCAACTGT---AATNGTGATTTATT-----------ATATT--ACA-C-TTA------ATGT--ATGGAACCTTT--A-GCCT-AG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAATGATAG---------TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTAT----TT-----T----TT-CA-TTTTT-AA-CCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTG--AATTA-TTTTN--TGAAT----AAATATTG---CC-GATA-TGTTAATTTATAAATGCAT--TG-C-TTGATCTCTAATAACA---T-T-CGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Alignments
lowQualScore : 111 11 111 222222 1111 11111111 111 4444444444444 1 11 1 22222222 2222222 111 111 1111 111 11111111 2222222222222222 111 2222 222 1 11 111 1 111 1111 111 1111 444444444 111 1111 111 111 2 222222 555555555555555555 111 1111 11 11111111111111 1 1111 11 222 111 222222 222 1 1 11111 1111 111 222 111 11 22222222 1111111111 11 11111 22222222222222 111 111111 1111111111 1111 1 111 11111 11 111 111 111 11 111111 11111
lowQualScore : 77 5 5 77 5 5 5 000 5 66 111 6 222222 6 4444 88888888 3 3 1 111 6 1111111111111 3 11 8 6 33333333 8 66 0 8 1 8 2222222 5 444 8 8 444 8 0 7777 8 8 8 444 8 3 99999999 8 8 1111111111111111 8 8 000 6 6 2222 5 000 6 6 99 3 55 6 1 6 99 111 6 3 99 888 6 6 6 6 6 4444 99 6 111 77 4444 99 99 555555555 99 6 6 111 6 4444 6 99 222 000 11 5 5 99 6 6 6 9 0 555555 2 333333333333333333 77 111 5 2222 77 555 5 22 0 77777777777777 1 5 0 8 88 7777 8 6 11 444 8 444 8 222222 111 0 0 3 77 55555 5 6 4444 0 111 3 111 44 6 6 99 111 1 00 44444444 99 99 6 3333333333 666 777 99 5 5 1 5 5 5 66 999 4 777 4 4 3 4 4 2 11111 11111111111111 66 4 4 4 4 4 333 4 4 222222 4 0 4444444444 0000 5 5 1 77 555 5 5 1 5 5 77777 0 11 0 222 55 5 333 55 0 999 4 4 3 0 0 333 4 66 4 4 88 4 4 4 777 000000 4 4 4 4 4 55 4 2 55 3 55 00000 4 777 4 4
lowQualScore : .. . . .. . . . ... . .. ... . ...... . .... ........ . . . ... . ............. . .. . . ........ . .. . . . . ....... . ... . . ... . . .... . . . ... . . ........ . . ................ . . ... . . .... . ... . . .. . .. . . . .. ... . . .. ... . . . . . .... .. . ... .. .... .. .. ......... .. . . ... . .... . .. ... ... .. . . .. . . . . . ...... . .................. .. ... . .... .. ... . .. . .............. . . . . .. .... . . .. ... . ... . ...... ... . . . .. ..... . . .... . ... . ... .. . . .. ... . .. ........ .. .. . .......... ... ... .. . . . . . . .. ... . ... . . . . . . ..... .............. .. . . . . . ... . . ...... . . .......... .... . . . .. ... . . . . . ..... . .. . ... .. . ... .. . ... . . . . . ... . .. . . .. . . . ... ...... . . . . . .. . . .. . .. ..... . ... . .
lowQualScore : 99 7 7 99 7 7 7 000 0 00 333 7 888888 7 2222 77777777 2 2 0 777 7 8888888888888 3 00 0 0 66666666 0 44 8 0 0 0 0000000 0 000 0 0 000 0 8 0000 0 0 0 000 0 2 22222222 0 0 0000000000000000 0 0 000 3 7 7777 2 888 7 7 22 3 88 7 7 7 22 777 7 3 22 333 7 7 7 7 7 2222 22 7 777 77 2222 22 22 777777777 22 7 7 777 7 2222 7 22 888 000 11 7 7 22 7 7 7 8 0 222222 5 777777777777777777 99 666 7 1111 99 999 7 00 1 11111111111111 4 7 8 0 88 0000 2 0 22 222 0 000 0 222222 000 0 0 7 99 11111 7 7 2222 7 777 5 000 88 7 7 22 777 0 33 22222222 22 22 7 9999999999 111 999 33 7 7 4 7 0 0 99 222 4 888 4 4 6 4 4 2 11111 00000000000000 11 4 4 4 6 4 999 4 4 888888 4 4 1111111111 6666 7 7 4 44 000 7 0 4 0 0 00000 1 99 2 888 55 0 888 99 5 888 4 4 2 1 5 888 4 11 4 4 77 4 4 4 888 111111 0 0 0 0 0 55 0 4 55 6 55 00000 0 000 0 0
consensus : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CA-TTTT-------C-----GAA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TA-TTTT-AAAAA-ATGGT---AGAAA-CTCGCC--A-CAAA-AAACG-TCA--TTGA-GTA-GCGC-TGA-CGTT-ATA--ATTGAC-GC-TC-CTCC---CG-GC-GTCC--GTT-ACG--TAGGAC-ACTTT-T--CCGTAT---C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGT-T------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-AGGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCA-GAAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TT-AAAG----TGTATCAGGCAAGTC-GGAAAA--GC-AA---AGTAT-TGC--A---CTCATT-TAG-AA-ATAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCG-C---ACTAGAATCACG-TT-TAGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAAT-AAT-GA--AAGAGTCAACTGT---AATNGT-GATT--------TATT--ATATT--ACA-C--T-T---A-ATG-T-ATGGAACCTTT--A-GCC-TAG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----TG-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTA-----T----TTT----TT-CA-TTTTT-AACCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTN--AATTA--TTTT--NTG-AATA-AATATTG---CCGATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-TCGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
Reference ( family-231 ) : NNAGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA-CACAGGGA-AAAAAAT--AATAAA-CTA----GT--TG---TTTTATTCTGATAT---CA-TTTT-------C-----GAA-TCTT--TG-A-TATT---TG--GAA-CTTTCAAAATA-TGTAAAAATTC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TA-TTTT-AAAAA-ATGGT---AGAAA-CTCGCC--A-C-AA-AAACG-TCA--TTGA-GCA-GCG--TGA-CGTT-ATA--ACTGAC-GC-T--CTCC---CG-GC-GTCC--GTT-ACG--TAGGAC-ACTTT-T--CCGTAT---C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGC--GCATTCCGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTNT------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGGGAAAGTTTGG-AT-AAATTATTT--C-ATTG-A-ATAAAAGAGATAAAGCCGTT-ACG----T-AGGACACTCTCTTAAAAAATCGGGGTGA-------------T---TTTTTTGCT--AAT-T-AAC-A----T--AGA-T-ATCCA-GAAAATGCAC-GAATGTTATGC-----CAACGAAC-TT-TTAGCATT-TACT-TT-AAAG----TGTATCAGGCAAGTC-GGAAAA--GC-AA---AGTAT-TGC--A---CTCA-T-TAG-AA-ATAATTATTTTTCCAAAAGCCTGTTTTT--AAATAGTCG-C---ACTAGAATCACG-TT-TAGA----CGTTCATTTTT---AAAATGATTAATT-N-AAAAT-AAT-GA--AAGAGTCAACTGT---AATNGT-GATT--------TATT--ATATT--ACA-C--T-T---A-ATG-T-ATGGAACCTTT--A-GCC-TAG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATGAA----TG-AT-AG--TTTTCA--A-A-CGCT-TACAACCG-ATT---GG-AAACTCA-TTT------C-CTCTA-----T----TTT----TT-CA-TTTTT-AACCTT-AAAAA--TTCAA-TG-TACGTC-TTTT-AAAAAGTG--AATTA--TTTT--NTG-AATA-AATATTG---CCGATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCTAATAACA---T-TCGT--CCAGCATTT-C-AACGCCGAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTNCC--CGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|1 : GACTGATTTAA--C-C-GTAACA--GG-GAC-A-TAAC---AA-TGGAAAA-CA---GGA-AAAAAAT--AA--AA-CTA----GT--AG---TTTTATTCTGATAT---CA-TTTT-------CTCTCCGAA-TCTTCATG-AATATTATATA--GAAACTTTCAAAA-A-TGTGAAAATTC-AGGA-A-----CAATGCATCT-TATATC---CG-GATAGAA--TATAAATCTTA-TTTG-TAAAA-ATGGT---AGAAAACTTGCC--A-C-AA-AACCG-TCA--TTTA-TTAAGCGC-TGA-CGTTTATA--ACTGAC-GCGT--CCTCGG-CA-GC-GTCG--TTT-ACGG-TAGGAC-AACTT-T--TCGTAT---C-CGTAA--TTTTATCAA--TGTGT-T-AGT-TGACATTA----CGT--GCATTCCGTT-GAT---GTTTTTT-GACGGCTTT-CTCATGG--ATGTGT------ACT---TT-TAACATAGGTGGA-TATA----GG-GCTTTGTTCAATCTTTTGTGGAAGAGTTTGG-AT-AAATTATTT--CAATTG-A-ATAAAAGAGATAAG--CGTT-ACGATTTT-TGGGGAC-CTCTTAAAATTTCGGGGTAG-------------A---TTTTTTGCTAAAAT-TAAACGA----T--AGA-T-ATCCA-G--AATGCAC-AAATGTTATGCAGGTTCAA--AGCTTT-TTAGTATTCTACT-TT-AACGTTCTTTTTTC-GGCAAGT--GGAAAAAGGC-AACATAGTAT-
gi|1 : TGTTTTT--AAATAGTCG-TCGAACTGCAGTGCCG-TTATAGAATTACATTCATTTTT---AAA-TGATTTATT-T-AAA-T-AATTGA--AAGTGTCAACTGT---ATTTG--GAAA--------TATTTGGTATTTAACATC--T-TTACA-CTG-TTATGGAGCCTTT--AAGCC-TAGGTAAGGTC-GTGTTTTTT-TT-C---T-CTCCGTTGTACGAGGTTATTCAGAATTCATGAAAACGCG-AT--G--TTTTCACCACA-CGCTGTACAACCG-ATTCT-GG-AA-CTCA-TTTTCAACAC-CATTT-----T----TTT----TT-CA-TTTTTTAACCTT-AAAA---TTCAA-TG-T--GTCCTTTT-AAAAAGCTCTAATTA--TTAT--ATGTAATA---TATTG---CTGAGAATGTTAATTTACAATTGCAAT-TG-GATTAATCTCTAATATCA---TCTCGT--CTAAGATTT-CCAACGC-GAGC-A-TGCCAAC---ATC----T-C-CTGAAAC-C-TGCAGTA--C-TTTACCGCCGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgttgtttttaaatagtcgtcgaactgcagtgccgttatagaattacattcatttttaaatgatttatttaaataattgaaagtgtcaactgtatttggaaatatttggtatttaacatctttacactgttatggagcctttaagcctaggtaaggtcgtgttttttttctctccgttgtacgaggttattcagaattcatgaaaacgcgatgttttcaccacacgctgtacaaccgattctggaactcattttcaacaccatttttttttcattttttaaccttaaaattcaatgtgtccttttaaaaagctctaattattatatgtaatatattgctgagaatgttaatttacaattgcaattggattaatctctaatatcatctcgtctaagatttccaacgcgagcatgccaacatctcctgaaacctgcagtactttaccgccgtgtccgccgtaacgtagaatcagtgt
gi|10 : gactgatttaaccgtaacagggacataacaatggaaaacaggaaaaaaataaaactagtagttttattctgatatcattttctctccgaatcttcatgaatattatatagaaactttcaaaaatgtgaaaattcaggaacaatgcatcttatatccggatagaatataaatcttatttgtaaaaatggtagaaaacttgccacaaaaccgtcatttattaagcgctgacgtttataactgacgcgtcctcggcagcgtcgtttacggtaggacaacttttcgtatccgtaattttatcaatgtgttagttgacattacgtgcattccgttgatgttttttgacggctttctcatggatgtgtacttttaacataggtggatatagggctttgttcaatcttttgtggaagagtttggataaattatttcaattgaataaaagagataagcgttacgatttttggggacctcttaaaatttcggggtagattttttgctaaaattaaacgatagatatccagaatgcacaaatgttatgcaggttcaaagctttttagtattctactttaacgttcttttttcggcaagtggaaaaaggcaacatagtatattagcattccatttgtttttgtttaagaaaaatattttattctttattcccccaattaaagaagatgaaagctagccgcacccttgt--T-T---A-ATG-T-ATCGAA--TTT--A-GC--TCG-TAAG-TCTGT--TTTT-----C---T-CTCCGTT-CACGAA-TT-TTCA-----CATGAA----TG-ATCAG---TTTCA--A-A-CGCT-TACAG-CG-ATT----G-AAACCCA-TTT------C-C-CTA-----T----TTT----TTGCA-TTT----ACCTT--AAAC--TTCAA-AG-TACGTC--TTT-GAAAAGTG--CA--A--TTTT--CTG-TATA-ACTAT-----CCGATA-TGTTAATTTATAAATGCA-T-TG-C-TTGATCTCT-ATAATAGATT-TTGT---CAGCATTT-C-CACGCC-AGC-A-T-CCAAACGGAGT----TGT-C-GGAAACC-TGTAG-A--A-TTTGGC--CGTGT-CCG---TG-----T-TACTAAGT-AG-AATCAGTGt
gi|11 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---AAATGGAGAA--ACAGAGAGAAAAAAT----TGAA-CTA----GT--TGCTTCTTTATTCTGATGT---CATTTTT-------T-----GAA-Tta
gi|12 : aatttcagccaggtttATGCA-T-TG-C-TTGATCTCTAA---CA---T-TCGTATCCAGCATTTTC-AACGCCAAGC-AAT-CCAAA---AAC----T-TAC-GAAAA-C-T---------------C--TGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTGataactagtgttcaa
gi|13 : acGCA-T-TG-C-TTGATCTGTAAGAACA---T-TCGT--CCAGCATTT-C-AACGCC-AGC-T-C-CCCAA---AAC----A-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGT-CCt
gi|14 : -TCGT--CCAGCATTT-C-AACGC-GAGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTGCC--CGTGG-CCG--CCG-----T-AAC---GT-AG-AATCAGTGa
gi|15 : T-CT-C---T-CTCCGTT-TGTGGG-TT-TACA-----CATGAA----TG-AT-AG--TTTTCA--A-A-CGCC-TACAACAA-ATT---GGAAAACTCG-TTT------C-CTCTA-----T----TTT----ta
gi|16 : -TC-GT--TTCTTGCC-C---T-CTCAGCT-GTCG-G-TT-T--A-----CATGAAC---TG-A---G--T----A--A-A-AACT-TCAAACCGCATTTACAG-AAAGTCA-TTT------C-gc
gi|17 : ctttgaAAATCGGGGTGA-------------T---TTT-TTGCT--AAT-T-AAC-A----T--AGA-T-ATCCA-AAAAATGCAC-GAATGTTGTGT-----CAACGAACGTT-TTAGCATT-
gi|18 : -TACGTC-TT---AAAAA-----AATT---------CTG-A-TA-AATATTC---TCGATG-TGTTAATTCATAAATGCG---TG-C-TTGATCTC
gi|19 : C----T-C-C-GAAAA-C-TGCAG-T--A-TTTACC--CGTGT-ACG--CCG-----T-AAC---GT-AG-AATCAGT
gi|2 : tGATTCTA--CGCAGTAACAACGG-GAC-AGTAAAGTAAAATG-AAAG-CACA---A-AAAGAGT--GA--AC-CTA----GTATTT---CTTTATTCTAGTATATTCA-TTTTATGATATC-----GAAATCTT--TCCA-CATA---TGT-GAA-CCGTCAAAATA-TGTCGAAAGTA-AGGA-GAGAGTCACTGC---TGT-TATCTTCCG-GATAGAAAATATAA----TA-TTGT-AAAAATATGGT---AGAAA-CTCACT--AAC-AACAAACGATCA--TTGATACA-GCGCGTGATCGTT-ATA--A-TGAC-GT-C--CTGCACACG-GCAGTCC--GTT-ACG--TAGGACCACTTTGT--CCGTAT---CGCGTAA--TTTTATCA---TGT-T-T-A-T-TAA-ATTA----C-C--GCATTCCTTT-G-T---GTTTTTTTGAC----CT-GTCAATG--A-G---------ATTA--TT-TAA-ATG---GGAATATAATGAGA-GCTT--T-CA--TTT---TGGTGAAGTTTGG-AT-AGATTATTTATC-ATTG-ATAGAAAAGAGATAAAGCCGTTGACG----TAAGGACACTC-CTT-AAAAATCGGGGTGA------------------TTTTTGCT--AAT-T-AAC-A----TTAAGA-T-ATCCAGGAAAATGCAC-AAATGTT-TGC-----CCA-AAAC-TTCTTAGTATT-TACTGTTAAAAG----T-TATATGGCAAGTCGGGAAAA--GCAAA---AGTAT-TGCATA---CTCATT-TAGAAA-ATAATTATTTTT-CAAAAGCCTGTTTTT---AATAGTCGCC---ACTAGATTCACGTTT-TAGA----CATTCATTTTT---AAAATGATTTATTAA-AAAATGAAT-GAACAAGGATCAACTGTTACAGTTGT-AATA--------TGTC--ATATT--ACA-CTGT-T---A-ATG-T-ATGG-CCCTTTTAA-ACC-TAG-TAAG-TC-GT--TTTTT--T-CACGTGCTTCGTG-TACGAG-TT-TTCA-----CATGAA----CG-AT-GGTTTTTTCA--A-CTCGCT-TAC-ACCA-TTT---GG-AAACTCA-TTT------CACTCAA-----T----TTTTTTGTT-CATTTTTT-AACCTT-AAAAA--TTCAAGTG-TATGTC-TTTTAAAAAAGTT--AATTATTTTTT--ATG-TATATAATATTGGGCCCGAGA-TGTTAATTTACAAATGCATT-TGTT-TTGATCTCT-ATATCA---T-TCGT--CTAGCATTT-C-AACG-CGAGCAA-T-CCAAA---ATC----TCT-C-GAAAA-CATGCAA-AGTA-TTTACC--CGTGT-CAGGCCCG-----TAAAC---GTCAG-AATCAG
gi|20 : AGACTGATTCTA--C-C-GTAACA--GG-GAC-A-TAAA---ACAT
gi|21 : taattttgattcGTGT-CCG--CCG-----T-AAC---GT-AG-AATCAGTG
gi|3 : AGACTGATTCTA--T-C-GTAACA--GG-ACCTA-TAAG---AAATGGAAAA-TACAGGAA-AAAAAACTAAATAAAACTG----AT--TG---TTT-GT----ATAT---CA-TTTT-------A-----CAA-TCTT--TG-A-TATT---TACTGAA-CTTTCAAAATA-TGTAAAACTTC-GGAACA-----CACTGC---T-T-TAT----CG-GATTGAAAATATAA----TA-TTTT-GAAAA-ATGGT---AGAAA-CTCG-C--A-C-AA-AAACG-TCA--AT-A-GCA-GCG--TAG-CGTT-ATAATATTGAC-GC-T--CT-C---CG-GT-GTCC--ATT-ACG--TAGAGC-AC-TT-T--CCGTAT---C-CG-AA--TTTTATCA---TGT-T-T-AGT-TAA-ATTA----CGT--GCATT-CGTT-GAT---GTTTTTT-GAC----TT-GTCATTG--ATGTCTTTGATGATTA--TT-T-A-ATG---GGA-TGTA----GA-GCTT--TTCA--TTT---TGGAAAAGTTT-G-ATAAAATTATTT--C-ATTG-A-ATAAAA-AGATAAAGCCGTT-ACG----TGAGGA-ACTCTCTTAAAACTTCGTAGTGA-------------TATCTTTTTTGCT--AATAT-AAC-A----T--AGA-G-ATTC--GAAAATGCAC-AAATGTTATGC-----CAACAAAC-TT-TGAGCATT-T--T-TT--AAG----TATATCAGGCAAGTC-AGAAAA---C-AA---AGTAT-TAC--A---CTCA-T-TAG-AA-ACAAGTATTTTTTCAAAAGCCTGTTTTT--AAATAGTCG-C---ACATGAATCACA--T-TAAA----CATTTATTTTT----AATTGATTAATA-A-AAGAT-AAT-GA--AAGAGTCAACTTT---AATGATAAATT--------TA-T--AT-TT--ACA-C--C-T---ATATGAT-ATTGAACTTTT--A-GGC-TAG-TAAG-TC-GT--TTTTT-CT-C---T-CTCCGTT-TACGAG-TT-TTCA-----CATG------------------------A-A-CGCT-TACAACCA-ATT---GG-ACACTCA-TTT------C-GTCTA-----T----TTT----TG-CA-TATTT-AACCCT-AAAAAT-TTCAA-TG-TA-GTC-TTTT-AAAAAGTG--AATTA--TTTT--GTA-AGAA-AATATTG---CTGATA-TATTTATTAATAATTGCA-TATG-C-TTGATCT-TAATAACA---T-TTGT--CCAACATTT-C-AACGCCAAGC-A-T-CCAAA---AACTCAGT-T-C-GAAAA-C-TGCAG-A--A-TTTTCC--CGTGT-CCG--CCG-----T-AAA---GT-AGAAATCAGTGatga
gi|4 : taGACTGATTCTA--C-G-GTAACA--GG-GAC-A-TAAA---AAATGGAAAA--ACAG--A-AAAAAAT--AA-AAA-CTA----GT--TG-------------ATAT---CA-TTTTT------C-----GAA-TCTT--TG-A-TATT---TG---AA-CTTTCC---TAGTGTAAAAAATC-AGGA-A-----CACTGC---T-T-TATC---CG-GATAGAAAATATAA----TATTTTT-AAAAA-ATGGT---AGAAA-CTCG-C--A-CAAA-AAACG-TCA--TT-A-GTA-TCG--TAA-CGTT-AT---ATTGAC-GC-TC-CTCC---CG-GC-GTCC--GTT-ACG--TAGGAC-ACTTT-T--CCGTAT---C-CG-AA--TTGTATCA---TGT-T-T-AGT-TAA-ATTA----CGT--GCATTCCGTT-GAT---ATTTTTT-GAC----TT-GTCATTG--ATG---------ATTA--TT-TAA-ATG---GGA-TATA----GA-GCTT--TTCA--CTT---TGTGAAAGTCTGA-AT-AAATTATTT--T-ATTG-A-ATAAAAGAGATAAAGCCGGT-ACA----T-AGGACACTCTCTTAAAAAATCGGGATGA-----------------TTTTTTGCT--AAT-G-AAC-A----T--AGA-T-ATCCA-GAAAATGCAA-AAATGTTATGC-----CAACAAACATT-TTAGCATT-TACT-TT-AAAG----TGTATCAGGCAAGTC-GGAAAA---C-AA---ATTAT-TGC--A---CTCATT-TAG-AAGATAATTATTTTTTCAAAAGCGTGTTTTT--AAATAGTCG-C---ACTAGAATCACG-T
gi|5 : gcT---TTGAAAAGTTTGG-GT-AAATTACTT--C-ATTG-A-ATAAA-GAGATAG-GTCATTCACGC---T-AGGACATTCTCTGACAAAATCGGGGTG------------------CTTTTTATT--AAT-T-AAC-AACATT--AGACT-ATCCA-GAAAATGCACCGAATGT-AT--------------C-TTATTAGCATT-CAGT-CT-AAAG----TGTATCAGGCGAGTT-TGGAAA--AC-AT---GGTATATGC--AGCACTCA-TCTAG-AA-ATAATTATTTTTCCAAAAGCCTGTTTTT--AAATAATCA-----ACTAGAATCATG-TT-TATA----TATCAATTTTT---AAAATGATTAAGT-T-AA---------------AGTCAACTGT---AATTGT--ATTACCGGGTATGTT--ATATT--ACA-C--TCT---A-ATC-A-ATGGGACCTTTA-A-GCC-T-T-TAAG-TC-GT--TTCTT-CTCC---T-CTCCGTT-TGTG-G-TT-TACA-----CATGAA----TGAAT-AAGTTTTTCA--A-A-CGCT-TAC-ACAG-ATT---GG-AAACTCA-TTT------C-CTCTA-----T----TTT----TG-CA--TTTT-AACGTT-TAACA--CTCAA-TGTTACGTC-TTTC-AAAAA--------TA--TCGT-------ATA-AATATTG----CGACG-TG
gi|6 : TTAATTTCCCAAAAGCCTGTTTTTTTAAATAGTCG-C---ACTAGAA-CACG-TT-TAGG----CGTTCATTTTTTTTAAAATGATTAATT-ATAAAAT-AAT-GA--AAGAGTCAATTGT---AATGAT-GATT--------TATT--ATATT--ACA-C--T-T---T-ATG-T-A-GGA--CCTC--A-GCCTTAG-TAAG-TC-GT--TATTT-CT-C---T----CGTT-TACGAG-TT-TTCT-----CATAAA----TG-A--AG--TTTCAA--A-A-CGCT-TTCCAACG-ATT---GC-GAAGTAA-TTT------T-CTGTATTTCCT----TTT----TT-CA-TTTTTAAACCTT-AAAAAATTCCAA-TG-TACTTC-TTTT-AAAA--TT--AATTA--TTTTTATTG-AATA-AATATTGC--CCAAT--TGTTAA-TTATAACTGCA-T-TG-C-TTACTTTCTAATAATAT--T-TCGT--CC-GCATTT-T-AACGCC--GC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCTG-A--ATTTTTCC--CGTGTCCCG--CCGTTCGTT-AA----GT-AG-AATCAGTG
gi|7 : tcatATTATTTTCCCAAAAGCCTGTTTTT--AAATAGTCG-C---ACTAGAATCACG-TT-TAGG----CGTTCATTTTT---AAAATGATTAATTAT-AAAAT-AAT-GA--AAGAGTCAATTGT---AATGAT-GATT--------TATT--ATATT--ACA-CT-T-T---A-ATG-T-ATG--ACATTTC-A-GCC-TAG-TAAG-TC-GT--TATT---T-C---T-CTCCGTT-TACGAG-TT-TTCT-----CATAAA----TG-AT-AG--TTTTCA--A-A-CGCT-TCCAACCG-ATT---GG-AAAGTCATTTT------C-CTGTG-----TTTCCTTT----TT-CA-TTTTA-AACCTTAAAAAA--TTCAA-TG-TACTTC-TTTT-TAAAAGTG--AATTAT-TTTT--ATG-AATA-AATATTG---CCAATA-TGTTAATTTATAAATGCA-T-TG-C-TTACTCTCTAATAATA---T-TCGT--CCAGCATTT-T-AACGCT-AGC-A-T-CCAAA---AAC----T-T-C-GAAAA-C-TGCAG-A--A-TTTCCC--CGTGT-CTG--CCG-----T-AAA---GT-AG-AATCAGTG
gi|8 : tcGACTGATTCTGACC-C-GTAACA--AGCGAC-A-TAAA---AA-TGGAAAAACACAAGGA-AAAAAAT--AATAAA-ATATATTGT--TC---TTATATTCTGATAT---CA--TTT-------C-----GAACTCTT--TG-ACTATT---TG--AAA-CTTTC-AAATT-TGTAAAAATTCAAGGA-A-----CA-TGC---T-T-TATC---CGAAAAAGAAAAGATAA----TA-TTTTGAAAAG-ATGATTAAAAAAA-CT-GCCGTA-CAAA-AAACC-TCAGGTGGA-GTA-AC----GA-CGTT-ATA--ACTGAC-GC-TC-CTCC---CA-GC-GTCCCGGTTAACGATTAGGAC-ACTTT-T--CCGCATATAC-CG-AATGTTCTATCAGCCTGT-TCT-AGTATCA-ATTACGATCGC--GCATTCCGTT-GAT---TTTTTAA-AAC----TTCGTCATTG--ATG---------ATCAGTCT-TAA-CTG---GCG-TGGA-----A-GCTT--TTCA--CTT---TGTGAAAATGTGGCAT-AA
gi|9 : t--ATTGACCGC-TTCCTCC---CGAGC-GCCC--GTTGACG--TAGGAC-TTTTT-TTTCCGTAT---T-CG-AA--TTTTATCA---TGT-T-TTAGT-GAA-ATTA----AGCTTGCATTCCATTTGATTTTGTTTTTT--------TT--TTACTGTCATCTAT------AATA--TTGTAA-ATG---GGA-TATA----GAAGCTT--TTCA---TT---TGTGAAAGTTTGG-AT-AAATTACTT--C-ATTGCA-ATAGAAGAGATAA-GCCGTTTACG----T-AGGACACTCTCTTAAAAAATCGGGGTGATTTTTTTTTTTTTT---TTTTTTGCT--AAT-TCAAC-A----T--AGA-TAATCCA-GAAAATGCAC--CATG-TATGT-----CAACGACG-TT-TTAGCATT-T