lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 444444 4 11 11 111 333 22222222 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 111 1 1 88888888888888888888888888888888888 22222 11111 22222 4 333333333 2222 11 1 1 22222 5555555555555555555555555 1111 22222
lowQualScore : 6 333333 0 00 6 1 00 000 777 5 5 00000000 77 5 5 66 11 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9999 7 4 4 1 777 8 22222 8888 4 222 8 44 4 4 55 0 4 3 66 4 9 4 0 9 4 4 4 4 11111111111111111111111111111111111 5 99 1 99 6 1 77777 88888 77777 0 6 999999999 2222 6 99 3 3 00000 1111111111111111111111111 888 4 1 5555 66 5 5 66 66 5 5 11111 5 5 66 88888 66 9999 4 4 4 8 4
lowQualScore : . ...... . .. . . .. ... ... . . ........ .. . . .. .. .......................................................................................................... .... . . . . ... . ..... .... . ... . .. . . .. . . . .. . . . . . . . . . ................................... . .. . .. . . ..... ..... ..... . . ......... .... . .. . . ..... ......................... ... . . .... .. . . .. .. . . ..... . . .. ..... .. .... . . . . .
lowQualScore : 0 000000 0 88 7 7 00 000 999 7 7 77777777 99 7 0 99 99 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4444 4 4 4 1 000 0 11111 5555 0 444 0 11 0 0 55 1 4 3 11 4 4 4 1 6 4 4 4 4 33333333333333333333333333333333333 7 33 7 22 7 7 33333 11111 00000 0 0 000000000 0000 0 33 3 3 00000 6666666666666666666666666 888 4 1 6666 99 0 0 99 99 0 0 22222 0 0 44 11111 11 4444 4 4 4 9 4
consensus : NNNNNNNNNNNNNNCTACTCCTTCAATCAAGGTGTCA-TTTCTTAAAATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTTTTT-CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TT--CCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T-A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCC-GGTGAGGC-GAGGCAAATA-TT-T-ACTGAATAAA-AAA-AA-AAGCAA------------------------ACA-TTATTTTT-GAGAT--GT-AATCGGAAACACACCTAT-TTATTTTTTTTTTTTTTT-ACTT--AAATAA-CTTTCTTACGGAA-A---TGG-CCGAGTAG--TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTT-----TTTTTTTTTTTG---TT-------A---TT-------GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TT-AGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-A-A-TA-TC-GGCCCCAAAAAA
Reference ( gi|2 ) : TATCTGATTCTGAGCCACTC-TTCA-TCAAGGTGTCAGTTTCTTAAAATCAATTT-CAGTCCTTA-TTCCCGTACACT---TCGTTTTTTCCGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TT--CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TAT-C-A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCC-GGTGAGGC-AAGGCATATA-TT-T-ACTGAATAAA-AAA-AA-AAGCAA------------------------ACA-TTATTTTT-GAGAT--GT-AATCGGAAACACACCTAT-TTATTTTTTTTTTTTTTT-ACTT--AA-TAAGCTCTCTTACGGAA-A---TGGGCCGAGTTG--TTACAAAT-AGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTT-----TTTTTTTTTTTG---TT-------G---TT-------GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TT-AGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-A-A-TA-TC-GGCCCCAAAAAA
gi|1 : CTACTCCTTCAATCAAGGTGTCA-TTTCTTAAAATTAATTT-CAGTCCTTA-TTCC-GTACACT-----GTTTTATTCAA-TC-T---------T--AAT-AAGT-TCGGGC--TCGAC-TATTCAAAT------TT--CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------T--TTTG----CTTTCAA-TATTACTTTT---CACATATACCTGAACACTCGA-TACAT-A-CATATCAGT----A--ACACAA-CA-TACTT-CAT-TCATGAACA--TAACT-TG-T--CCCCGGTGAGGCGAAGGCAAATA-TT-T-ACTGA-TAAA-AAT-AA-AA----------------------------ACA-TTACTTT--GAGAT--GT-AATCGGAAACACACCTA----ATTTTTTTTTTT-----ACTT--AAATAA-CTTTCTTACGGAA-A---ATGGCCGAGTAG--TTACGAAT-GGAGTTGATGTATTTAAATA-ACTTTCACA-TTTTTTTTTTTTTTTTGGTTA---CG-------A---TT-------GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TT-AGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-A-A-TA-TC-GGCCCCAAAAAA
gi|5 : atatctgatagcctaattagacttacacctgtcaaatgccagtgtttttttccactaattaggcactgggcggtggggcctttcaattggaaaaagcgacaacagaacattgggtaaaattcataaaacactgaagtaaagcattaacAATCAATTT-CAGTCCCCA-TTCT-GTACACT---TCGTTTTT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TT--TCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTAGAATAT-C-A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--TCC-CGTGAGGC-AAGGCAAATA-TT-T-ACTGAATAAA-AAaaccc
gi|4 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaaggccatttaaacttactAATCAAGT--CAGTCCCCA-T-CTCGTACACT---TCGTTTT---CGA-TCATC--------T--AAT-AAGTATCGGGC--TCGAATTATTCAAAT------TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--TTTT----GCTTCAA-T-TTACTTTTAATCACATA---CT-AACACTCGATTAT-CAA-CATATCAGT----AC-ACACAAAT--TA-TT-CAT-T-AT-AATA--CACTT-CG-TTGCCC-GGTGA-GC-GATGCAAATA-TTAT-ACCTGATAAA-----------CAA------------------------ATATTTATTTTT-tatttatttttttggggttacgattgggaaattttccccctcaaaattgggaaaatattaggaaatttaggattgggctggggcgaatatcggcccaaatcgggccaaaaaacat
gi|3 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactAATCAATTTTCAGTCCTT--TCCTCGTA-ACTAGCTCGTTTT---CGAGTC-TC--------T--AATGAAGT-TCGGGCCCTCGA--TATTCAAATCAANNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--TTTT----GCTTCAAAT-TTACTTTTAATCACATA---CTG-ACATCCGA-TAT-C---CATATCAGT----ACAACAC-AACA-TA-TTCCAT-T-ATGATAA--CACTT-CGTT--CCC-GGTG-GGC-AAGGCA-ATA-TT-T-A-TGAATAAA-AA---------AT------------------------ACT-TTATTTTT-GGGGTTCGA-ATTCGGGAAttggttactggattggatttcccctcagaaattggaaaagtatttaggaaatttacggatggactctggccgaaatagtcgggccacaaatcggggcccaaaaaaaa
gi|7 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactATTGATTC-CAGTCTGTA-TTCTCGTACACT---TC-CTTTTTACAA-AC-TC--------TTAAAT-AAAT-TCAGGC--TCGA--ttttccccctcaaaagattgggaaaaaattaggaaatttttaaggattgggactggggcgaatatcgccccaaaacagggccccaaaaaaaac
gi|6 : attttgtaatattttggCAATTC-CAGTCCTTAATTCTCGTACATT---TCGTTTGT--CAA-TT-TC--------T--AAT-AAGT-GGGGGC--TCAA--TATTCAAAT------TA--CCGAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT--TTTGTTTTGCTATAA-T-TTATTTGTAATCCCATA---CTGAACACTCGA-TGT-T-A-CATGTCAGT----AT-ACACAAATG-TA-TC-TAT-T-GTGAATA--CACTT-CGTT--CCT-GGTGATGC-AAGGCAAATA-GT-T-ACTGAAAAAA-AAAGAA-AAGCAAAAATATTTTTCCGACCCTGACCATACA-TTATTTTG-AAGAT--GT-AATCGGAAACAGAACTAT-Tagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagtactgaaattggatgttacatgtcagttatagcacgcaaattcatgtatataccgtgaaggtgatgcaaagcaaatatttgctgaataaaaaatagaatttgtctaactcctatcctactttttttttttt
gi|8 : TACACT---TCGTTTCTT--AA-TT-TTAAAAAATTT--AAC-AAGT-TCTGGC--TCAA--TATTCAAAT------Tc
gi|9 : GT-TTGGGC--TCGA--TATTCAAAT------TA--TTGAAATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----A--TTCG----GTTT-AA-T-TTATTTTTAACCAAATA---CTGAACACTCGA-TGT-T-G-CATGTCAGT----AT-ACACAAATG-TA-TA-TAT-T-GTGAATA--Caaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattttttggtttattttattttttacccaaaactgaacacttgatgctatatgtcagttctaacaaatgtatatatagtgtataagtttcactcctggtgatccaaggcaaatattttctgatttaaaaaataatggaaccccaaaga
gi|8 : -----T--TTTG----GTTT-AT-T-TTATTTTTTACCCAAAA---CTGAACACTTGA-TGC-T-A-TATGTCAGT----TC-TAACAAATG-TA-TA-TAT-A-GTGTATA--AGTTT-CACT--CCT-GGTGATCC-AAGGCAAATA-TT-T-TCTGATTTAA-AAA-AT-AAttttaatactcatgaatggaaagatggtgatttatttgatttttaaaactattttattgtt
gi|11 : tacacttcgtttcttaattttaaaaaatttaacaagttctggctcaatattcaaattaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcatt-----T--TTTG----TTTTGAA-T-A-ATTTTTAACCA-ATA---GGGAACA-TCGA-TGT-T-AACATGTTAGT----AC-ACACAACTT-TA-TG--AT-C-GTGGATA--CGATTACA-T--TCA-GATAA--T-CAGGCAAACA-TT-T-ACTGAATAAA-AAATAACAGGCAA------------------------tggaaccccaaaga
gi|12 : tttttgtgaaatagtaaaaccagttgtcaaaatgtcTTG----GCTTTAA-C-TTATTTTTAATCCCATA---CTGAACACTCGA-TAga
gi|7 : TA---CTGAA-ATTGGA-TGT-T-A-CATGTCAGTTATAGC-ACGCAAA------TT-CATGT-AT--ATA--C-----CG-T--GAA-GGTGATGC-AAAGCAAATA-TT-T-GCTGAATAAA-AAATAG-AA-------------------------------------TTT-G---T--CT-A---------ACTCCTATCCTACTTTTTTTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctacattattttcgagatgtaatcggaaacacgcctattttttttttttttga
gi|10 : attttgtaatattttggattgattccagtctgtattctcgtacacttcctttttacaaactcttaaataaattcaggctcgaagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagCAGT----CC-ACA-AAACAATAGTT-CAT-T-ATGAATATTCACTT-CG-T--CCC-GGTGAGGC-GA-GCAAATAGTT-TAACTGAATAAATAAT-AA-AAGCAA------------------------CTA-TTATTTTTAGAGAT--GTAAATACGAAACACAC--------TTTTTTTTTTTTTTTAACTTAAAA-TAA-CTTTCTTACGGAG-ACATTGG---AAGTTAGTTTACGAATGGGAGTTGAGGCATTTAGATATACTCGCACA-GTTT-----TTTATATTT
gi|12 : ------------------------ACA-TTATTTTC-GAGAT--GT-AATCGGAAACACGCCTAT-TT-TTTTTTTTTTTaggccttatttttttttttttt
gi|13 : ttggctttaacttatttttaatcccatactgaacactcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctATCGGAAACACACCTAT-TT-------TTTTTATTT-ACTT--AAATAA-CTTTCCTACGGAATA---TGG-CCGAGTAG--TTACGACT-GGAGTTGAGGCATTTAGATA-ATTCGCACATTTTT-----TTTTTTTTTTTG---TTTAATACGA---TT-------GG---GAA-TTTTCCCCCTCga
gi|4 : T-----TTATTTTTTTGG---TT-------A---CT-------GGATTGGA-TTTCCCC--TCAG---AAA--T-TG-GAAAAG--TA--TTTAGGAAA-TTT-----ACG-GAT---GGAC-T--CTG--GCC----GAA-A-TAGTCGGGCCACAAA
gi|5 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactaatcaagtcagtccccatctcgtacacttcgttttcgatcatctaataagtatcgggctcgaattattcaaattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactaacactcgattatcaacatatcagtacacacaaattattcattataatacacttcgttgcccggtgagcgatgcaaatattatacctgataaacaaata-----TTTATTTTTTTGGGGTT-------ACGATT-------GG---GAAATTTTCCCCCTCA----AAA--T-TG-GGAAAA--TA--TT-AGGAAA-TTT-----A-G-GATTG-GG-C-T--GGG--GC-----G-A-A-TA-TC-GGCCCAAAtcggggcccaaaaaaaa
gi|3 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaaggccatttaaacttactaatcaatttcagtccccattctgtacacttcgtttttcgatctctaataagttcgggctcgatattcaaattttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactgaacactagaatatcacatatcagtacacacaaacatattcattatgaatacacttcgttcccgtgaggcaaggcaaatatttactgaataaaaataTTTATTTTTG---GG-------G---TTCGAATTCGG---GAA-TTTTCCCCCTCA----AAAGAT-TG-GGAAAA--AA--TT-AGGAAA-TTTTTA--A-G-GATTG-GGAC-T--GGG--G-C----G-A-A-TA-TC--GCCCCAAAAtcgggccaaaaaacat
gi|15 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactaatcaattttcagtcctttcctcgtaactagctcgttttcgagtctctaatgaagttcgggccctcgatattcaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaaatttacttttaatcacatactgacatccgatatccatatcagtacaacacaacatattccattatgataacacttcgttcccggtgggcaaggcaatatttatgaataaaaaatacTTTTTTTGG---TTTACG---A---TT-------GG---CAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TT-AGGAAATTTT-----A-G-GATT----AC-----GG--CCC----C-A-A--A-TC-GGGCCCAAAAAAcagggccccaaaaaaaac
gi|17 : caTTTC---TT-------G---T--------GG---GAG-TT---------A----AAC--T-TG-GGAAAA--TA--TC-AGGGGA-TTT-----C-G-TATTG-GGAC-T--GGG--GCC----G-ATA-T--TC-AGCCCCAAAaca
gi|14 : ---TT-------GG---GAT-TTTTCCCGC-------AAA--TATGAGGAAAAATTAATTT-AGGAAA-TTTTATCAA-GTGATTG-GGAAATAAGGGACGCCATAAG-A-C-TAATG-GGCCCCAAAAAA
gi|16 : acac-TTTCCCCCCTCAAATCAAA--T-T---TAAAA--TG--TT--GGAAA--TT-----A-G-GATTATGGAC-T----G--GCC----A-A-ATTA-TC-AGCCCAAAAAAgac
gi|17 : at-T--GGG--GCT----G-A-A-TA-TC-GGCCCCA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): CAGTGGGTTTTTTTCCCAGTACTATGGGACTGGGGCCAGGGGACCTTACAATTGGGAAAATTAACAATATAA
Unaligned ( gi|19 ): GTGTTTTTTTCCCCCATTAATTTGGGACTGGGGGCTGGGGCCCT
Unaligned ( gi|20 ): TTTGGCTTCCAAGTATGTTCTTATAATAGTAAATGG
Unaligned ( gi|21 ): TATACTTTGTCATTGGAACATCGGGAACCAAGT
Alignments
lowQualScore : 1 1 1 222 22222 11111111 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 22222222 555555555555555555555555555 2222222222 1 1 1 11111 11 1 1 1 5555555555555555 1111 11 11111 1
lowQualScore : 5 5 3 333 8 88 5 0 0 888 22222 5 5 88888888 66 5 4 66 00 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888 5 4 4 666 3 4 6666 7777 3 111 7 3 3 3 55 4 2222 7 66 4 4 4 99999999 0 55 0 444444444444444444444444444 77 55 3333333333 0 3 0 0 88888 22 0 0 0 8 3 8 6 66 3333333333333333 4 777 4 3 3333 66 4 4 66 00 4 88888 4 4 44 88888 66 9999 4 4 3 4
lowQualScore : . . . ... . .. . . . ... ..... . . ........ .. . . .. .. ........................................................................................................ .... . . . ... . . .... .... . ... . . . . .. . .... . .. . . . ........ . .. . ........................... .. .. .......... . . . . ..... .. . . . . . . . .. ................ . ... . . .... .. . . .. .. . ..... . . .. ..... .. .... . . . .
lowQualScore : 0 5 3 333 0 00 7 1 1 888 00000 0 0 11111111 99 0 4 11 66 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5555 7 0 0 444 6 0 9999 7777 6 888 3 6 6 6 00 0 5555 5 11 0 0 0 55555555 2 11 1 999999999999999999999999999 99 44 3333333333 0 2 0 0 55555 55 0 0 0 0 2 0 7 99 7777777777777777 4 888 0 9 9999 11 4 4 11 66 4 99999 4 4 66 11111 11 4444 4 4 3 4
consensus : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTTT-T-C-GA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
Reference ( family-2298 ) : NNNNNNNNNNNNNNCTACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTTT-TTC-GA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|1 : CTACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATTAATTT-CAGTCCTTA-TTC-CGTACACT-----GTTTTATTC-AA-TC-T---------T--AAT-AAGT-TCGGGC--TCGAC-TATTCAAAT------TTC------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----CTTTCAA-TATTACTTT---TCACATATACCTGAACACTCGA-TACAT--A-CATATCAGT----A--ACAC-AACA-TACTT-CAT-TCATGAACA--TAACT-TG-TC-CCCGGTGAGGCGAAGGCAAATA-TT-TA-CTG-ATAAAAAT-AA-----AAACA-TTA-CTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTA----A----TTTTTTTTTTTACTT-AAATAA-CTTTCTTACGGAAA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGATGTATTTAAATA-ACTTTCACA-TTTTT-TTTTTTTTTTTGG---TTACG----A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|10 : atatctgatagcctaattagacttacacctgtcaaatgccagtgtttttttccactaattaggcactgggcggtggggcctttcaattggaaaaagcgacaacagaacattgggtaaaattcataaaacactgaagtaaagcattaacCAGT----CC-ACA-AAACAATAGTT-CAT-T-ATGAATATTCACTT-CG-T--CCCGGTGAGGCG-AG-CAAATAGTT-TAACTGAATAAATAATAA-AAGCAACTA-TTATTTTTA-GA-----------------------GAT--GTAAATACGAAACACACTT------TTTT-TTTTTTTTTAACTTAAAATAA-CTTTCTTACGG-AG-ACATTGG---AAGTTAGTTTACGAATGGGAGTTGAGGCATTTAGATATACTCGCACA-GTTTT-TTATATTTaaccc
gi|11 : -----T--TTTG----TTTTGAA-T-A-ATTTTTAACCA-ATA---GGGAACA-TCGA-TGT-T--AACATGTTAGT----AC-ACACAACTT-TA-TG--AT-C-GTGGATA--CGATTACA-T--TCAGATAA--TC-AGGCAAACA-TT-TA-CTGAATAAAAAATAACAGGCAAaggccttatttttttttttttt
gi|12 : tttttgtgaaatagtaaaaccagttgtcaaaatgtcTTG----GCTTTAA-C-TTATTTTTAATCCCATA---CTGAACACTCGA-Tga
gi|12 : ACA-TTATTTTC--GA-----------------------GAT--GTAA-TCGGAAACACGCCTAT-TT-TTTTTTTTTTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctacattattttcgagatgtaatcggaaacacgcctattttttttttttttga
gi|13 : ttggctttaacttatttttaatcccatactgaacactcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctA-TCGGAAACACACCTAT-TT-------TTTTTATTTACTT-AAATAA-CTTTCCTACGG-AATA---TGG-CCGAG-TAG-TTACGACT-GGAGTTGAGGCATTTAGATA-ATTCGCACATTTTTT-TTTTTTTTTT--G---TTTAATACGA---TT-GG---GAA-TTTTCCCCCTCga
gi|14 : ---TT-GG---GAT-TTTTCCCGC-------AAA--TATGAGGAAAAATTAATTTAGGAAA-TTTTATCAA-GTGATTG-GGAAATAAGGGACGCCATAAG-AC-TAATG-GGCCCCAAAAAA
gi|15 : acacTTTTTTTG--G---TTTACG---A---TT-GG---CAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAATTTT-----A-G-GATT----AC-----GG--CCC----C-AA--A-TC-GGGCCCAAAAAAgac
gi|16 : ca-TTTCCCCCCTCAAATCAAA--T-T---TAAAA--TG--TT-GGAAA--TT-----A-G-GATTATGGAC-T----G--GCC----A-AATTA-TC-AGCCCAAAAAAaca
gi|17 : atTTTCTT--G---T---------------GG---GAG-TT---------A----AAC--T-TG-GGAAAA--TA--TCAGGGGA-TTT-----C-G-TATTG-GGAC-T--GGG--GCC----G--A-TATTC-AGCCCCAAA
gi|2 : CCACTC-TTCA-TCAAGGTGTCAGTTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCCCGTACACT---TCGTTTT-TTCCGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCA-AGGCATATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AA-TAAGCTCTCTTACGG-AA-A---TGGGCCGAG-TTG-TTACAAAT-AGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------G---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|3 : tatctgattctgag-AATCAATTTTCAGTCCTT--TCCTCGTA-ACTAGCTCGTTTT---C-GAGTC-TC--------T--AATGAAGT-TCGGGCCCTCGA--TATTCAAATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--TTTT----GCTTCAAAT-TTACTTTTAATCACATA---CTG-ACATCCGA-TAT-C----CATATCAGT----ACAACAC-AACA-TA-TTCCAT-T-ATGATAA--CACTT-CGTT--CCCGGTG-GGCA-AGGC-AATA-TT-TA--TGAATAAAAA---------ATACT-TTATTTTT--GG-----------------------GGTTCGAAT-TCGGGAA
gi|3 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactTTTATTTTT--GGGGTTCGA----A---TTCGG---GAA-TTTTCCCCCTCA----AAAGAT-TG-GGAAAA--AA--TTAGGAAA-TTTTTA--A-G-GATTG-GGAC-T--GGG--G-C----G-AA-TA-TC--GCCCCAAAAttttccccctcaaaagattgggaaaaaattaggaaatttttaaggattgggactggggcgaatatcgccccaaaacagggccccaaaaaaaac
gi|4 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactaatcaattttcagtcctttcctcgtaactagctcgttttcgagtctctaatgaagttcgggccctcgatattcaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaaatttacttttaatcacatactgacatccgatatccatatcagtacaacacaacatattccattatgataacacttcgttcccggtgggcaaggcaatatttatgaataaaaaatac-AATCAAGT--CAGTCCCCA-T-CTCGTACACT---TCGTTTT---C-GA-TCATC--------T--AAT-AAGTATCGGGC--TCGAATTATTCAAAT------TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CT-AACACTCGA-TTA-TCAA-CATATCAGT----AC-ACACAAAT--TA-TT-CAT-T-AT-AATA--CACTT-CG-TTGCCCGGTGA-GCG-ATGCAAATA-TTATA-CCTGATAAA----------CAAATATTTATTTTT--cagggccccaaaaaaaac
gi|4 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactGATA-A---ACAAA-TATTTATTTTT--TTG--G---TT-------A---CT-GGATTGGA-TTT--CCCCTCAG---AAA--T-TG-GAAAAG--TAT-TTAGGAAA-TTT-----ACG-GAT---GGAC-T--CTG--GCC----GAAA-TAGTCGGGCCACAAAttggttactggattggatttcccctcagaaattggaaaagtatttaggaaatttacggatggactctggccgaaatagtcgggccacaaatcggggcccaaaaaaaa
gi|5 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactaatcaagtcagtccccatctcgtacacttcgttttcgatcatctaataagtatcgggctcgaattattcaaattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactaacactcgattatcaacatatcagtacacacaaattattcattataatacacttcgttgcccggtgagcgatgcaaatattatacctGCCA-TTTAAACTTACTAATCAATTT-CAGTCCCCA-TTCT-GTACACT---TCGTTTT-T-C-GA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTAGAATAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--TCCCGTGAGGCA-AGGCAAATA-TT-TA-CTGAATAAAAAtcggggcccaaaaaaaa
gi|5 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaagT-TTATTTTTTT--GGGGTT-------ACGATT-GG---GAAATTTTCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GG-C-T--GGG--GC-----G-AA-TA-TC-GGCCCAAAtatttatttttttggggttacgattgggaaattttccccctcaaaattgggaaaatattaggaaatttaggattgggctggggcgaatatcggcccaaatcgggccaaaaaacat
gi|6 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaaggccatttaaacttactaatcaatttcagtccccattctgtacacttcgtttttcgatctctaataagttcgggctcgatattcaaattttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactgaacactagaatatcacatatcagtacacacaaacatattcattatgaatacacttcgttcccgtgaggcaaggcaaatatttactgaataaaaataCAATTC-CAGTCCTTAATTCTCGTACATT---TCGTTTG-T-C-AA-TT-TC--------T--AAT-AAGT-GGGGGC--TCAA--TATTCAAAT------TACCGAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT--TTTGTTTTGCTATAA-T-TTATTTGTAATCCCATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AT-ACACAAATG-TA-TC-TAT-T-GTGAATA--CACTT-CGTT--CCTGGTGATGCA-AGGCAAATA-GT-TA-CTGAAAAAAAAAGAA-AAGCAAAAA--TATTTTTCCGACCCTGACCATACATTATTTTGAAGAT--GTAA-TCGGAAACAGAACTAT-Ttcgggccaaaaaacat
gi|7 : ATTGATTC-CAGTCTGTA-TTCTCGTACACT---TCCTTTT-TAC-AA-AC-TC--------TTAAAT-AAAT-TCAGGC--TCGA--c
gi|7 : attttgtaatattttggTA---CTGAA-ATTGGA-TGT-T--A-CATGTCAGTTATAGC-ACGCAAA------TT-CATGT-AT--ATA--C-----CG-T--GAAGGTGATGCA-AAGCAAATA-TT-TG-CTGAATAAAAAATAG-AA-------------TTT--G--------------------------T--CTA----------ACTCCTATCCTACTTTTTTTTTTTTagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagtactgaaattggatgttacatgtcagttatagcacgcaaattcatgtatataccgtgaaggtgatgcaaagcaaatatttgctgaataaaaaatagaatttgtctaactcctatcctactttttttttttt
gi|8 : attttgtaatattttggattgattccagtctgtattctcgtacacttcctttttacaaactcttaaataaattcaggctcgaagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagTACACT---TCGTTTC-TT--AA-TT-TTAAAAAATTT--AAC-AAGT-TCTGGC--TCAA--TATTCAAAT------T
gi|8 : -----T--TTTG----GTTT-AT-T-TTATTTTTTACCCAAAA---CTGAACACTTGA-TGC-T--A-TATGTCAGT----TC-TAACAAATG-TA-TA-TAT-A-GTGTATA--AGTTT-CACT--CCTGGTGATCCA-AGGCAAATA-TT-TT-CTGATTTAAAAA-AT-AAaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattttttggtttattttattttttacccaaaactgaacacttgatgctatatgtcagttctaacaaatgtatatatagtgtataagtttcactcctggtgatccaaggcaaatattttctgatttaaaaaataatggaaccccaaaga
gi|9 : tacacttcgtttcttaattttaaaaaatttaacaagttctggctcaatattcaaattaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattGT-TTGGGC--TCGA--TATTCAAAT------TATTGAAATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----A--TTCG----GTTT-AA-T-TTATTTTTAACCAAATA---CTGAACACTCGA-TGT-T--G-CATGTCAGT----AT-ACACAAATG-TA-TA-TAT-T-GTGAATA--Ctggaaccccaaaga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGTGGGTTTTTTTCCCAGTACTATGGGACTGGGGCCAGGGGACCTTACAATTGGGAAAATTAACAATATAA
Unaligned ( gi|19 ): GTGTTTTTTTCCCCCATTAATTTGGGACTGGGGGCTGGGGCCCT
Unaligned ( gi|20 ): TTTGGCTTCCAAGTATGTTCTTATAATAGTAAATGG
Unaligned ( gi|21 ): TATACTTTGTCATTGGAACATCGGGAACCAAGT
Alignments
lowQualScore : 1 1 1 222 111111 11111111 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 22222222 555555555555555555555555555 2222222222 1 1 1 11111 11 1 1 1 5555555555555555 1111 11 11111 1
lowQualScore : 5 5 3 333 8 88 5 0 0 888 777777 5 5 88888888 66 5 4 66 00 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888 5 4 4 666 3 4 6666 7777 3 111 7 3 3 3 55 4 2222 7 66 4 4 4 99999999 0 55 0 444444444444444444444444444 77 55 3333333333 0 3 0 0 88888 22 0 0 0 8 3 8 6 66 3333333333333333 4 777 4 3 3333 66 4 4 66 00 4 88888 4 4 44 88888 66 9999 4 4 3 4
lowQualScore : . . . ... . .. . . . ... ...... . . ........ .. . . .. .. ........................................................................................................ .... . . . ... . . .... .... . ... . . . . .. . .... . .. . . . ........ . .. . ........................... .. .. .......... . . . . ..... .. . . . . . . . .. ................ . ... . . .... .. . . .. .. . ..... . . .. ..... .. .... . . . .
lowQualScore : 0 5 3 333 0 00 7 1 1 888 999999 0 0 11111111 99 0 4 11 66 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5555 7 0 0 444 6 0 9999 7777 6 888 3 6 6 6 00 0 5555 5 11 0 0 0 55555555 2 11 1 999999999999999999999999999 99 44 3333333333 0 2 0 0 55555 55 0 0 0 0 2 0 7 99 7777777777777777 4 888 0 9 9999 11 4 4 11 66 4 99999 4 4 66 11111 11 4444 4 4 3 4
consensus : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
Reference ( family-2298 ) : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|1 : CTACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATTAATTT-CAGTCCTTA-TTC-CGTACACT-----GTTTTATT--CAA-TC-T---------T--AAT-AAGT-TCGGGC--TCGAC-TATTCAAAT------TTC------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----CTTTCAA-TATTACTTT---TCACATATACCTGAACACTCGA-TACAT--A-CATATCAGT----A--ACAC-AACA-TACTT-CAT-TCATGAACA--TAACT-TG-TC-CCCGGTGAGGCGAAGGCAAATA-TT-TA-CTG-ATAAAAAT-AA-----AAACA-TTA-CTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTA----A----TTTTTTTTTTTACTT-AAATAA-CTTTCTTACGGAAA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGATGTATTTAAATA-ACTTTCACA-TTTTT-TTTTTTTTTTTGG---TTACG----A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|10 : atatctgatagcctaattagacttacacctgtcaaatgccagtgtttttttccactaattaggcactgggcggtggggcctttcaattggaaaaagcgacaacagaacattgggtaaaattcataaaacactgaagtaaagcattaacCAGT----CC-ACA-AAACAATAGTT-CAT-T-ATGAATATTCACTT-CG-T--CCCGGTGAGGCG-AG-CAAATAGTT-TAACTGAATAAATAATAA-AAGCAACTA-TTATTTTTA-GA-----------------------GAT--GTAAATACGAAACACACTT------TTTT-TTTTTTTTTAACTTAAAATAA-CTTTCTTACGG-AG-ACATTGG---AAGTTAGTTTACGAATGGGAGTTGAGGCATTTAGATATACTCGCACA-GTTTT-TTATATTTaaccc
gi|11 : -----T--TTTG----TTTTGAA-T-A-ATTTTTAACCA-ATA---GGGAACA-TCGA-TGT-T--AACATGTTAGT----AC-ACACAACTT-TA-TG--AT-C-GTGGATA--CGATTACA-T--TCAGATAA--TC-AGGCAAACA-TT-TA-CTGAATAAAAAATAACAGGCAAaggccttatttttttttttttt
gi|12 : tttttgtgaaatagtaaaaccagttgtcaaaatgtcTTG----GCTTTAA-C-TTATTTTTAATCCCATA---CTGAACACTCGA-Tga
gi|12 : ACA-TTATTTTC--GA-----------------------GAT--GTAA-TCGGAAACACGCCTAT-TT-TTTTTTTTTTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctacattattttcgagatgtaatcggaaacacgcctattttttttttttttga
gi|13 : ttggctttaacttatttttaatcccatactgaacactcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctA-TCGGAAACACACCTAT-TT-------TTTTTATTTACTT-AAATAA-CTTTCCTACGG-AATA---TGG-CCGAG-TAG-TTACGACT-GGAGTTGAGGCATTTAGATA-ATTCGCACATTTTTT-TTTTTTTTTT--G---TTTAATACGA---TT-GG---GAA-TTTTCCCCCTCga
gi|14 : ---TT-GG---GAT-TTTTCCCGC-------AAA--TATGAGGAAAAATTAATTTAGGAAA-TTTTATCAA-GTGATTG-GGAAATAAGGGACGCCATAAG-AC-TAATG-GGCCCCAAAAAA
gi|15 : acacTTTTTTTG--G---TTTACG---A---TT-GG---CAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAATTTT-----A-G-GATT----AC-----GG--CCC----C-AA--A-TC-GGGCCCAAAAAAgac
gi|16 : ca-TTTCCCCCCTCAAATCAAA--T-T---TAAAA--TG--TT-GGAAA--TT-----A-G-GATTATGGAC-T----G--GCC----A-AATTA-TC-AGCCCAAAAAAaca
gi|17 : atTTTCTT--G---T---------------GG---GAG-TT---------A----AAC--T-TG-GGAAAA--TA--TCAGGGGA-TTT-----C-G-TATTG-GGAC-T--GGG--GCC----G--A-TATTC-AGCCCCAAA
gi|2 : CCACTC-TTCA-TCAAGGTGTCAGTTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCCCGTACACT---TCGTTT--TTTCCGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCA-AGGCATATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AA-TAAGCTCTCTTACGG-AA-A---TGGGCCGAG-TTG-TTACAAAT-AGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------G---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|3 : tatctgattctgag-AATCAATTTTCAGTCCTT--TCCTCGTA-ACTAGCTCGTTT--T---CGAGTC-TC--------T--AATGAAGT-TCGGGCCCTCGA--TATTCAAATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--TTTT----GCTTCAAAT-TTACTTTTAATCACATA---CTG-ACATCCGA-TAT-C----CATATCAGT----ACAACAC-AACA-TA-TTCCAT-T-ATGATAA--CACTT-CGTT--CCCGGTG-GGCA-AGGC-AATA-TT-TA--TGAATAAAAA---------ATACT-TTATTTTT--GG-----------------------GGTTCGAAT-TCGGGAA
gi|3 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactTTTATTTTT--GGGGTTCGA----A---TTCGG---GAA-TTTTCCCCCTCA----AAAGAT-TG-GGAAAA--AA--TTAGGAAA-TTTTTA--A-G-GATTG-GGAC-T--GGG--G-C----G-AA-TA-TC--GCCCCAAAAttttccccctcaaaagattgggaaaaaattaggaaatttttaaggattgggactggggcgaatatcgccccaaaacagggccccaaaaaaaac
gi|4 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactaatcaattttcagtcctttcctcgtaactagctcgttttcgagtctctaatgaagttcgggccctcgatattcaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaaatttacttttaatcacatactgacatccgatatccatatcagtacaacacaacatattccattatgataacacttcgttcccggtgggcaaggcaatatttatgaataaaaaatac-AATCAAGT--CAGTCCCCA-T-CTCGTACACT---TCGTTT--T---CGA-TCATC--------T--AAT-AAGTATCGGGC--TCGAATTATTCAAAT------TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CT-AACACTCGA-TTA-TCAA-CATATCAGT----AC-ACACAAAT--TA-TT-CAT-T-AT-AATA--CACTT-CG-TTGCCCGGTGA-GCG-ATGCAAATA-TTATA-CCTGATAAA----------CAAATATTTATTTTT--cagggccccaaaaaaaac
gi|4 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactGATA-A---ACAAA-TATTTATTTTT--TTG--G---TT-------A---CT-GGATTGGA-TTT--CCCCTCAG---AAA--T-TG-GAAAAG--TAT-TTAGGAAA-TTT-----ACG-GAT---GGAC-T--CTG--GCC----GAAA-TAGTCGGGCCACAAAttggttactggattggatttcccctcagaaattggaaaagtatttaggaaatttacggatggactctggccgaaatagtcgggccacaaatcggggcccaaaaaaaa
gi|5 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactaatcaagtcagtccccatctcgtacacttcgttttcgatcatctaataagtatcgggctcgaattattcaaattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactaacactcgattatcaacatatcagtacacacaaattattcattataatacacttcgttgcccggtgagcgatgcaaatattatacctGCCA-TTTAAACTTACTAATCAATTT-CAGTCCCCA-TTCT-GTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTAGAATAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--TCCCGTGAGGCA-AGGCAAATA-TT-TA-CTGAATAAAAAtcggggcccaaaaaaaa
gi|5 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaagT-TTATTTTTTT--GGGGTT-------ACGATT-GG---GAAATTTTCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GG-C-T--GGG--GC-----G-AA-TA-TC-GGCCCAAAtatttatttttttggggttacgattgggaaattttccccctcaaaattgggaaaatattaggaaatttaggattgggctggggcgaatatcggcccaaatcgggccaaaaaacat
gi|6 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaaggccatttaaacttactaatcaatttcagtccccattctgtacacttcgtttttcgatctctaataagttcgggctcgatattcaaattttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactgaacactagaatatcacatatcagtacacacaaacatattcattatgaatacacttcgttcccgtgaggcaaggcaaatatttactgaataaaaataCAATTC-CAGTCCTTAATTCTCGTACATT---TCGTTT--GT--CAA-TT-TC--------T--AAT-AAGT-GGGGGC--TCAA--TATTCAAAT------TACCGAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT--TTTGTTTTGCTATAA-T-TTATTTGTAATCCCATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AT-ACACAAATG-TA-TC-TAT-T-GTGAATA--CACTT-CGTT--CCTGGTGATGCA-AGGCAAATA-GT-TA-CTGAAAAAAAAAGAA-AAGCAAAAA--TATTTTTCCGACCCTGACCATACATTATTTTGAAGAT--GTAA-TCGGAAACAGAACTAT-Ttcgggccaaaaaacat
gi|7 : ATTGATTC-CAGTCTGTA-TTCTCGTACACT---TCCTTT--TTA-CAA-AC-TC--------TTAAAT-AAAT-TCAGGC--TCGA--c
gi|7 : attttgtaatattttggTA---CTGAA-ATTGGA-TGT-T--A-CATGTCAGTTATAGC-ACGCAAA------TT-CATGT-AT--ATA--C-----CG-T--GAAGGTGATGCA-AAGCAAATA-TT-TG-CTGAATAAAAAATAG-AA-------------TTT--G--------------------------T--CTA----------ACTCCTATCCTACTTTTTTTTTTTTagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagtactgaaattggatgttacatgtcagttatagcacgcaaattcatgtatataccgtgaaggtgatgcaaagcaaatatttgctgaataaaaaatagaatttgtctaactcctatcctactttttttttttt
gi|8 : attttgtaatattttggattgattccagtctgtattctcgtacacttcctttttacaaactcttaaataaattcaggctcgaagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagTACACT---TCGTTT--CT--TAA-TT-TTAAAAAATTT--AAC-AAGT-TCTGGC--TCAA--TATTCAAAT------T
gi|8 : -----T--TTTG----GTTT-AT-T-TTATTTTTTACCCAAAA---CTGAACACTTGA-TGC-T--A-TATGTCAGT----TC-TAACAAATG-TA-TA-TAT-A-GTGTATA--AGTTT-CACT--CCTGGTGATCCA-AGGCAAATA-TT-TT-CTGATTTAAAAA-AT-AAaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattttttggtttattttattttttacccaaaactgaacacttgatgctatatgtcagttctaacaaatgtatatatagtgtataagtttcactcctggtgatccaaggcaaatattttctgatttaaaaaataatggaaccccaaaga
gi|9 : tacacttcgtttcttaattttaaaaaatttaacaagttctggctcaatattcaaattaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattGT-TTGGGC--TCGA--TATTCAAAT------TATTGAAATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----A--TTCG----GTTT-AA-T-TTATTTTTAACCAAATA---CTGAACACTCGA-TGT-T--G-CATGTCAGT----AT-ACACAAATG-TA-TA-TAT-T-GTGAATA--Ctggaaccccaaaga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGTGGGTTTTTTTCCCAGTACTATGGGACTGGGGCCAGGGGACCTTACAATTGGGAAAATTAACAATATAA
Unaligned ( gi|19 ): GTGTTTTTTTCCCCCATTAATTTGGGACTGGGGGCTGGGGCCCT
Unaligned ( gi|20 ): TTTGGCTTCCAAGTATGTTCTTATAATAGTAAATGG
Unaligned ( gi|21 ): TATACTTTGTCATTGGAACATCGGGAACCAAGT
Alignments
lowQualScore : 1 1 1 222 111111 11111111 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 22222222 555555555555555555555555555 2222222222 1 1 1 11111 11 1 1 1 5555555555555555 1111 11 11111 1
lowQualScore : 5 5 3 333 8 88 5 0 0 888 777777 5 5 88888888 66 5 4 66 00 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888 5 4 4 666 3 4 6666 7777 3 111 7 3 3 3 55 4 2222 7 66 4 4 4 99999999 0 55 0 444444444444444444444444444 77 55 3333333333 0 3 0 0 88888 22 0 0 0 8 3 8 6 66 3333333333333333 4 777 4 3 3333 66 4 4 66 00 4 88888 4 4 44 88888 66 9999 4 4 3 4
lowQualScore : . . . ... . .. . . . ... ...... . . ........ .. . . .. .. ........................................................................................................ .... . . . ... . . .... .... . ... . . . . .. . .... . .. . . . ........ . .. . ........................... .. .. .......... . . . . ..... .. . . . . . . . .. ................ . ... . . .... .. . . .. .. . ..... . . .. ..... .. .... . . . .
lowQualScore : 0 5 3 333 0 00 7 1 1 888 999999 0 0 11111111 99 0 4 11 66 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5555 7 0 0 444 6 0 9999 7777 6 888 3 6 6 6 00 0 5555 5 11 0 0 0 55555555 2 11 1 999999999999999999999999999 99 44 3333333333 0 2 0 0 55555 55 0 0 0 0 2 0 7 99 7777777777777777 4 888 0 9 9999 11 4 4 11 66 4 99999 4 4 66 11111 11 4444 4 4 3 4
consensus : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
Reference ( family-2298 ) : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|1 : CTACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATTAATTT-CAGTCCTTA-TTC-CGTACACT-----GTTTTATT--CAA-TC-T---------T--AAT-AAGT-TCGGGC--TCGAC-TATTCAAAT------TTC------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----CTTTCAA-TATTACTTT---TCACATATACCTGAACACTCGA-TACAT--A-CATATCAGT----A--ACAC-AACA-TACTT-CAT-TCATGAACA--TAACT-TG-TC-CCCGGTGAGGCGAAGGCAAATA-TT-TA-CTG-ATAAAAAT-AA-----AAACA-TTA-CTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTA----A----TTTTTTTTTTTACTT-AAATAA-CTTTCTTACGGAAA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGATGTATTTAAATA-ACTTTCACA-TTTTT-TTTTTTTTTTTGG---TTACG----A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|10 : atatctgatagcctaattagacttacacctgtcaaatgccagtgtttttttccactaattaggcactgggcggtggggcctttcaattggaaaaagcgacaacagaacattgggtaaaattcataaaacactgaagtaaagcattaacCAGT----CC-ACA-AAACAATAGTT-CAT-T-ATGAATATTCACTT-CG-T--CCCGGTGAGGCG-AG-CAAATAGTT-TAACTGAATAAATAATAA-AAGCAACTA-TTATTTTTA-GA-----------------------GAT--GTAAATACGAAACACACTT------TTTT-TTTTTTTTTAACTTAAAATAA-CTTTCTTACGG-AG-ACATTGG---AAGTTAGTTTACGAATGGGAGTTGAGGCATTTAGATATACTCGCACA-GTTTT-TTATATTTaaccc
gi|11 : -----T--TTTG----TTTTGAA-T-A-ATTTTTAACCA-ATA---GGGAACA-TCGA-TGT-T--AACATGTTAGT----AC-ACACAACTT-TA-TG--AT-C-GTGGATA--CGATTACA-T--TCAGATAA--TC-AGGCAAACA-TT-TA-CTGAATAAAAAATAACAGGCAAaggccttatttttttttttttt
gi|12 : tttttgtgaaatagtaaaaccagttgtcaaaatgtcTTG----GCTTTAA-C-TTATTTTTAATCCCATA---CTGAACACTCGA-Tga
gi|12 : ACA-TTATTTTC--GA-----------------------GAT--GTAA-TCGGAAACACGCCTAT-TT-TTTTTTTTTTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctacattattttcgagatgtaatcggaaacacgcctattttttttttttttga
gi|13 : ttggctttaacttatttttaatcccatactgaacactcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctA-TCGGAAACACACCTAT-TT-------TTTTTATTTACTT-AAATAA-CTTTCCTACGG-AATA---TGG-CCGAG-TAG-TTACGACT-GGAGTTGAGGCATTTAGATA-ATTCGCACATTTTTT-TTTTTTTTTT--G---TTTAATACGA---TT-GG---GAA-TTTTCCCCCTCga
gi|14 : ---TT-GG---GAT-TTTTCCCGC-------AAA--TATGAGGAAAAATTAATTTAGGAAA-TTTTATCAA-GTGATTG-GGAAATAAGGGACGCCATAAG-AC-TAATG-GGCCCCAAAAAA
gi|15 : acacTTTTTTTG--G---TTTACG---A---TT-GG---CAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAATTTT-----A-G-GATT----AC-----GG--CCC----C-AA--A-TC-GGGCCCAAAAAAgac
gi|16 : ca-TTTCCCCCCTCAAATCAAA--T-T---TAAAA--TG--TT-GGAAA--TT-----A-G-GATTATGGAC-T----G--GCC----A-AATTA-TC-AGCCCAAAAAAaca
gi|17 : atTTTCTT--G---T---------------GG---GAG-TT---------A----AAC--T-TG-GGAAAA--TA--TCAGGGGA-TTT-----C-G-TATTG-GGAC-T--GGG--GCC----G--A-TATTC-AGCCCCAAA
gi|2 : CCACTC-TTCA-TCAAGGTGTCAGTTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCCCGTACACT---TCGTTT--TTTCCGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCA-AGGCATATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AA-TAAGCTCTCTTACGG-AA-A---TGGGCCGAG-TTG-TTACAAAT-AGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------G---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|3 : tatctgattctgag-AATCAATTTTCAGTCCTT--TCCTCGTA-ACTAGCTCGTTT--T---CGAGTC-TC--------T--AATGAAGT-TCGGGCCCTCGA--TATTCAAATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--TTTT----GCTTCAAAT-TTACTTTTAATCACATA---CTG-ACATCCGA-TAT-C----CATATCAGT----ACAACAC-AACA-TA-TTCCAT-T-ATGATAA--CACTT-CGTT--CCCGGTG-GGCA-AGGC-AATA-TT-TA--TGAATAAAAA---------ATACT-TTATTTTT--GG-----------------------GGTTCGAAT-TCGGGAA
gi|3 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactTTTATTTTT--GGGGTTCGA----A---TTCGG---GAA-TTTTCCCCCTCA----AAAGAT-TG-GGAAAA--AA--TTAGGAAA-TTTTTA--A-G-GATTG-GGAC-T--GGG--G-C----G-AA-TA-TC--GCCCCAAAAttttccccctcaaaagattgggaaaaaattaggaaatttttaaggattgggactggggcgaatatcgccccaaaacagggccccaaaaaaaac
gi|4 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactaatcaattttcagtcctttcctcgtaactagctcgttttcgagtctctaatgaagttcgggccctcgatattcaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaaatttacttttaatcacatactgacatccgatatccatatcagtacaacacaacatattccattatgataacacttcgttcccggtgggcaaggcaatatttatgaataaaaaatac-AATCAAGT--CAGTCCCCA-T-CTCGTACACT---TCGTTT--T---CGA-TCATC--------T--AAT-AAGTATCGGGC--TCGAATTATTCAAAT------TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CT-AACACTCGA-TTA-TCAA-CATATCAGT----AC-ACACAAAT--TA-TT-CAT-T-AT-AATA--CACTT-CG-TTGCCCGGTGA-GCG-ATGCAAATA-TTATA-CCTGATAAA----------CAAATATTTATTTTT--cagggccccaaaaaaaac
gi|4 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactGATA-A---ACAAA-TATTTATTTTT--TTG--G---TT-------A---CT-GGATTGGA-TTT--CCCCTCAG---AAA--T-TG-GAAAAG--TAT-TTAGGAAA-TTT-----ACG-GAT---GGAC-T--CTG--GCC----GAAA-TAGTCGGGCCACAAAttggttactggattggatttcccctcagaaattggaaaagtatttaggaaatttacggatggactctggccgaaatagtcgggccacaaatcggggcccaaaaaaaa
gi|5 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactaatcaagtcagtccccatctcgtacacttcgttttcgatcatctaataagtatcgggctcgaattattcaaattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactaacactcgattatcaacatatcagtacacacaaattattcattataatacacttcgttgcccggtgagcgatgcaaatattatacctGCCA-TTTAAACTTACTAATCAATTT-CAGTCCCCA-TTCT-GTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTAGAATAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--TCCCGTGAGGCA-AGGCAAATA-TT-TA-CTGAATAAAAAtcggggcccaaaaaaaa
gi|5 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaagT-TTATTTTTTT--GGGGTT-------ACGATT-GG---GAAATTTTCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GG-C-T--GGG--GC-----G-AA-TA-TC-GGCCCAAAtatttatttttttggggttacgattgggaaattttccccctcaaaattgggaaaatattaggaaatttaggattgggctggggcgaatatcggcccaaatcgggccaaaaaacat
gi|6 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaaggccatttaaacttactaatcaatttcagtccccattctgtacacttcgtttttcgatctctaataagttcgggctcgatattcaaattttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactgaacactagaatatcacatatcagtacacacaaacatattcattatgaatacacttcgttcccgtgaggcaaggcaaatatttactgaataaaaataCAATTC-CAGTCCTTAATTCTCGTACATT---TCGTTT--GT--CAA-TT-TC--------T--AAT-AAGT-GGGGGC--TCAA--TATTCAAAT------TACCGAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT--TTTGTTTTGCTATAA-T-TTATTTGTAATCCCATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AT-ACACAAATG-TA-TC-TAT-T-GTGAATA--CACTT-CGTT--CCTGGTGATGCA-AGGCAAATA-GT-TA-CTGAAAAAAAAAGAA-AAGCAAAAA--TATTTTTCCGACCCTGACCATACATTATTTTGAAGAT--GTAA-TCGGAAACAGAACTAT-Ttcgggccaaaaaacat
gi|7 : ATTGATTC-CAGTCTGTA-TTCTCGTACACT---TCCTTT--TTA-CAA-AC-TC--------TTAAAT-AAAT-TCAGGC--TCGA--c
gi|7 : attttgtaatattttggTA---CTGAA-ATTGGA-TGT-T--A-CATGTCAGTTATAGC-ACGCAAA------TT-CATGT-AT--ATA--C-----CG-T--GAAGGTGATGCA-AAGCAAATA-TT-TG-CTGAATAAAAAATAG-AA-------------TTT--G--------------------------T--CTA----------ACTCCTATCCTACTTTTTTTTTTTTagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagtactgaaattggatgttacatgtcagttatagcacgcaaattcatgtatataccgtgaaggtgatgcaaagcaaatatttgctgaataaaaaatagaatttgtctaactcctatcctactttttttttttt
gi|8 : attttgtaatattttggattgattccagtctgtattctcgtacacttcctttttacaaactcttaaataaattcaggctcgaagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagTACACT---TCGTTT--CT--TAA-TT-TTAAAAAATTT--AAC-AAGT-TCTGGC--TCAA--TATTCAAAT------T
gi|8 : -----T--TTTG----GTTT-AT-T-TTATTTTTTACCCAAAA---CTGAACACTTGA-TGC-T--A-TATGTCAGT----TC-TAACAAATG-TA-TA-TAT-A-GTGTATA--AGTTT-CACT--CCTGGTGATCCA-AGGCAAATA-TT-TT-CTGATTTAAAAA-AT-AAaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattttttggtttattttattttttacccaaaactgaacacttgatgctatatgtcagttctaacaaatgtatatatagtgtataagtttcactcctggtgatccaaggcaaatattttctgatttaaaaaataatggaaccccaaaga
gi|9 : tacacttcgtttcttaattttaaaaaatttaacaagttctggctcaatattcaaattaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattGT-TTGGGC--TCGA--TATTCAAAT------TATTGAAATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----A--TTCG----GTTT-AA-T-TTATTTTTAACCAAATA---CTGAACACTCGA-TGT-T--G-CATGTCAGT----AT-ACACAAATG-TA-TA-TAT-T-GTGAATA--Ctggaaccccaaaga
blockSeqs : . . G AAA T TT A AGC TTTC G A AAAAAATT TA G A CC AT CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TTTT G A . . A . CAA TATA A CAA G C G . TT A TTG G G G A A ATAACAGG TT CCGACCCTGACCATACATTATTTTGAA TC AA TCCTACTTTT A A G . ACAT GC T T G T C T A . TTTAATACGA C ATT A T AATC GA A A AT AT T TATCA C T AT ATAAG AC ATAA A T A G
blockSeqs : . . . T . . TTA . . . . . . . . TACCGAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT . T . . . . . AA . . TT . . . . . . TT G C . . . ATAAAAG T AGA . A TTTATTTTT . A . . TA C . . . . T . . . GGGTTCGAA . . . T G . . . . T . TTA . . G TG . . . . T .
blockSeqs : . T . . TT . . . . . . . . TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . C . . . . . A . . CA . . . . . . TT G A . . . AGAAAAG T GA . A TTTTTTTT . . . . A . . . . . C . . . GGGTTACGA . . . C . . . . . . . . . . G TG . . . . G .
blockSeqs : . C . . GT . . . . . . . . TTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . C . . . . . A . . CA . . . . . . CT G A . . . AAAAAG T GA . A TTTT . . . . . TTTACGA . . . C . . . . . . . . . . G TG . . . . . .
blockSeqs : C . . CT . . . . . . . . TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT . C . . . . . A . . CA . . . . . . T T G . . . ATAGAA T GG . T TTT . . TTG . . . C . . . . . . . . . . G TC . . . . . .
blockSeqs : . . . T . . . . . . . . TATTGAAATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA . C . . . . . A . . TG . . . . . . T T A . . . . . G . A . TTA . . . T . . . . . . . . . . G TG . . . . . .
blockSeqs : . T . . . . . . . . . T . . . . . A . . TG . . . . . . T T A . . . . . . . T . . . T . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . G . . TG . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . T . A . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : TT**** ** *** T*** A* AAAAAG** TTTCTTTT** ** TTCGA***********
originalCons : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGCG-AGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTAT-TTATTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--G---TT-------A---TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
finalCons : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTTTT----CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CGT---CCCGGTGAGGCA-AGGCAAATA-TT-TA-CTGAATAAAAAAAAAAG--CAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTATTTCTTTT--TTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTT-TTTTTTTTTT--GTTCGA-----------TT-GG---GAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGTGGGTTTTTTTCCCAGTACTATGGGACTGGGGCCAGGGGACCTTACAATTGGGAAAATTAACAATATAA
Unaligned ( gi|19 ): GTGTTTTTTTCCCCCATTAATTTGGGACTGGGGGCTGGGGCCCT
Unaligned ( gi|20 ): TTTGGCTTCCAAGTATGTTCTTATAATAGTAAATGG
Unaligned ( gi|21 ): TATACTTTGTCATTGGAACATCGGGAACCAAGT
Alignments
lowQualScore : 1 1 1 222 111111 11111111 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 22222222 11 66666666666666666666666 2222222 1 1 1 11111 11 1 1 1 1 1 4444444444444 1111 11 11111 1
lowQualScore : 5 5 3 333 8 88 5 0 0 888 777777 5 5 88888888 66 5 4 66 00 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888 5 4 4 666 3 4 6666 7777 3 111 7 3 3 3 55 4 2222 7 4 4 4 4 33333333 5 33 11111111111111111111111 99 5 3 6666666 0 3 0 0 88888 22 0 0 0 0 0 44 77 6666666666666 66 4 2 3333 66 4 4 66 00 4 88888 4 4 44 88888 66 1 9999 4 4 3 4
lowQualScore : . . . ... . .. . . . ... ...... . . ........ .. . . .. .. ........................................................................................................ .... . . . ... . . .... .... . ... . . . . .. . .... . . . . . ........ . .. ....................... .. . . ....... . . . . ..... .. . . . . . .. .. ............. .. . . .... .. . . .. .. . ..... . . .. ..... .. . .... . . . .
lowQualScore : 0 5 3 333 0 00 7 1 1 888 999999 0 0 11111111 99 0 4 11 66 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5555 7 0 0 444 6 0 9999 7777 6 888 3 6 6 6 00 0 5555 5 0 0 0 0 33333333 7 66 77777777777777777777777 22 7 2 2222222 0 2 0 0 55555 55 0 0 0 0 0 33 99 3333333333333 99 4 7 9999 11 4 4 11 66 4 99999 4 4 66 11111 11 1 4444 4 4 3 4
consensus : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGC-AAGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTATTT-TTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTTT--TTTTTTTTT--G---TTA----C--GA--TTGGGAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
Reference ( family-2298 ) : NNNNNNNNNNNNNNCCACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCTCGTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCCGAANTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AC-ACACAAACG-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGC-AAGGCAAATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTATTT-CTTTTTTTTTTTTTTACTT-AAATAA-CTTTCTTACGG-AA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTTTT--TTTTTTTTT--G---TT-----C--GA--TTGGGAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|1 : CTACTCCTTCAATCAAGGTGTCA-TTT---CTTAA-AATTAATTT-CAGTCCTTA-TTC-CGTACACT-----GTTTTATT--CAA-TC-T---------T--AAT-AAGT-TCGGGC--TCGAC-TATTCAAAT------TTC------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----CTTTCAA-TATTACTTT---TCACATATACCTGAACACTCGA-TACAT--A-CATATCAGT----A--ACAC-AACA-TACTT-CAT-TCATGAACA--TAACT-TG-TC-CCCGGTGAGGCGAAGGCAAATA-TT-TA-CTG-ATAAAAAT-AA-----AAACA-TTA-CTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTA-------ATTTTTTTTTTTACTT-AAATAA-CTTTCTTACGGAAA-A---TGG-CCGAG-TAG-TTACGAAT-GGAGTTGATGTATTTAAATA-ACTTTCACA-TTTTTT--TTTTTTTTTTGG---TTA----C--GA--TTGGGAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|10 : atatctgatagcctaattagacttacacctgtcaaatgccagtgtttttttccactaattaggcactgggcggtggggcctttcaattggaaaaagcgacaacagaacattgggtaaaattcataaaacactgaagtaaagcattaacCAGT----CC-ACA-AAACAATAGTT-CAT-T-ATGAATATTCACTT-CG-T--CCCGGTGAGGC-GAG-CAAATAGTT-TAACTGAATAAATAATAA-AAGCAACTA-TTATTTTTA-GA-----------------------GAT--GTAAATACGAAACACAC----TT-TTTTT-TTTTTTTTAACTTAAAATAA-CTTTCTTACGG-AG-ACATTGG---AAGTTAGTTTACGAATGGGAGTTGAGGCATTTAGATATACTCGCACA-GTTTTT--TATATTTaaccc
gi|11 : -----T--TTTG----TTTTGAA-T-A-ATTTTTAACCA-ATA---GGGAACA-TCGA-TGT-T--AACATGTTAGT----AC-ACACAACTT-TA-TG--AT-C-GTGGATA--CGATTACA-T--TCAGATAA--T-CAGGCAAACA-TT-TA-CTGAATAAAAAATAACAGGCAAaggccttatttttttttttttt
gi|12 : tttttgtgaaatagtaaaaccagttgtcaaaatgtcTTG----GCTTTAA-C-TTATTTTTAATCCCATA---CTGAACACTCGA-Tga
gi|12 : ACA-TTATTTTC--GA-----------------------GAT--GTAA-TCGGAAACACGCCTATTT-TTTTTTTTTTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctacattattttcgagatgtaatcggaaacacgcctattttttttttttttga
gi|13 : ttggctttaacttatttttaatcccatactgaacactcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccgacccccgtccctA-TCGGAAACACACCTATTT-------TTTTTATTTACTT-AAATAA-CTTTCCTACGG-AATA---TGG-CCGAG-TAG-TTACGACT-GGAGTTGAGGCATTTAGATA-ATTCGCACATTTTTTT--TTTTTTTTT--G---TTTAATAC--GA--TTGGGAA-TTTTCCCCCTCga
gi|14 : --TTGGGAT-TTTTCCCGC-------AAA--TATGAGGAAAAATTAATTTAGGAAA-TTTTATCAA-GTGATTG-GGAAATAAGGGACGCCATAAG-AC-TAATG-GGCCCCAAAAAA
gi|15 : acacTTTTTTTG--G---TTTA---C--GA--TTGGCAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAATTTT-----A-G-GATT----AC-----GG--CCC----C-AA--A-TC-GGGCCCAAAAAAgac
gi|16 : ca-TTTCCCCCCTCAAATCAAA--T-T---TAAAA--TG--TT-GGAAA--TT-----A-G-GATTATGGAC-T----G--GCC----A-AATTA-TC-AGCCCAAAAAAaca
gi|17 : atTTA----AAC--T-TG-GGAAAA--TA--TCAGGGGA-TTT-----C-G-TATTG-GGAC-T--GGG--GCC----G--A-TATTC-AGCCCCAAA
gi|2 : tttcttgtgggagCCACTC-TTCA-TCAAGGTGTCAGTTT---CTTAA-AATCAATTT-CAGTCCTTA-TTCCCGTACACT---TCGTTT--TTTCCGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T--TTTG----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTCGA-TAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--CCCGGTGAGGC-AAGGCATATA-TT-TA-CTGAATAAAAAA-AA-AAGCAAACA-TTATTTTT--GA-----------------------GAT--GTAA-TCGGAAACACACCTATTTATTTTTTTTTTTTTTTACTT-AA-TAAGCTCTCTTACGG-AA-A---TGGGCCGAG-TTG-TTACAAAT-AGAGTTGAGGCATTTAGATA-ACTCGCACA-TTTT--TTTTTTTTTTT--G---TT---------G--TTGGGAA-TTTCCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GGAC-T--GGG--GCC----G-AA-TA-TC-GGCCCCAAAAAA
gi|3 : tatctgattctgag-AATCAATTTTCAGTCCTT--TCCTCGTA-ACTAGCTCGTTT--T---CGAGTC-TC--------T--AATGAAGT-TCGGGCCCTCGA--TATTCAAATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--TTTT----GCTTCAAAT-TTACTTTTAATCACATA---CTG-ACATCCGA-TAT-C----CATATCAGT----ACAACAC-AACA-TA-TTCCAT-T-ATGATAA--CACTT-CGTT--CCCGGTG-GGC-AAGGC-AATA-TT-TA--TGAATAAAAA---------ATACT-TTATTTTT--GG-----------------------GGTTCGAAT-TCGGGAA
gi|3 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttact--TTTATTTTT--GGGGTT-----C--GAATTCGGGAA-TTTTCCCCCTCA----AAAGAT-TG-GGAAAA--AA--TTAGGAAA-TTTTTA--A-G-GATTG-GGAC-T--GGG--G-C----G-AA-TA-TC--GCCCCAAAAttttccccctcaaaagattgggaaaaaattaggaaatttttaaggattgggactggggcgaatatcgccccaaaacagggccccaaaaaaaac
gi|4 : cagcagtgtttttttttccactaatttggaactgggggtgggcctttcaattgggaaaaagcgaacaaaacagaaaaaaattgggaaattgcaataacactgaagtaaagccatttaaatttactaatcaattttcagtcctttcctcgtaactagctcgttttcgagtctctaatgaagttcgggccctcgatattcaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaaatttacttttaatcacatactgacatccgatatccatatcagtacaacacaacatattccattatgataacacttcgttcccggtgggcaaggcaatatttatgaataaaaaatac-AATCAAGT--CAGTCCCCA-T-CTCGTACACT---TCGTTT--T---CGA-TCATC--------T--AAT-AAGTATCGGGC--TCGAATTATTCAAAT------TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CT-AACACTCGA-TTA-TCAA-CATATCAGT----AC-ACACAAAT--TA-TT-CAT-T-AT-AATA--CACTT-CG-TTGCCCGGTGA-GC-GATGCAAATA-TTATA-CCTGATAAA----------CAAATATTTATTTTT--cagggccccaaaaaaaac
gi|4 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactTTT--ATTTTTTTG--G---TTA----CTGGA--TTGG--A-TTT--CCCCTCAG---AAA--T-TG-GAAAAG--TAT-TTAGGAAA-TTT-----ACG-GAT---GGAC-T--CTG--GCC----GAAA-TAGTCGGGCCACAAAttggttactggattggatttcccctcagaaattggaaaagtatttaggaaatttacggatggactctggccgaaatagtcgggccacaaatcggggcccaaaaaaaa
gi|5 : ttctatatcagtttgtttttttccactaatttgggactgggccctttcatgtggaaaaaaaagcgacaaaacaagaaaaatttgggaaaatcataacactgaagttaaagccattctaaccttactaatcaagtcagtccccatctcgtacacttcgttttcgatcatctaataagtatcgggctcgaattattcaaattttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactaacactcgattatcaacatatcagtacacacaaattattcattataatacacttcgttgcccggtgagcgatgcaaatattatacctgataaacaaataGCCA-TTTAAACTTACTAATCAATTT-CAGTCCCCA-TTCT-GTACACT---TCGTTT--TT--CGA-TC-TC--------T--AAT-AAGT-TCGGGC--TCGA--TATTCAAAT------TTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNTTTT----GCTTCAA-T-TTACTTTTAATCACATA---CTGAACACTAGAATAT-C--A-CATATCAGT----AC-ACACAAACA-TA-TT-CAT-T-ATGAATA--CACTT-CG-T--TCCCGTGAGGC-AAGGCAAATA-TT-TA-CTGAATAAAAAtcggggcccaaaaaaaa
gi|5 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaagTT--TATTTTTTT--GGGGTTA----C--GA--TTGGGAAATTTTCCCCCTCA----AAA--T-TG-GGAAAA--TA--TTAGGAAA-TTT-----A-G-GATTG-GG-C-T--GGG--G-C----G-AA-TA-TC-GGCCCAAAtatttatttttttggggttacgattgggaaattttccccctcaaaattgggaaaatattaggaaatttaggattgggctggggcgaatatcggcccaaatcgggccaaaaaacat
gi|6 : aactgcagtgtttttttccactaatttgggactgggggctggggccctttcaattgggaaaaaacgacaaaacaagaaaaattgggaaaattcataacactgaagtaaggccatttaaacttactaatcaatttcagtccccattctgtacacttcgtttttcgatctctaataagttcgggctcgatattcaaattttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgcttcaatttacttttaatcacatactgaacactagaatatcacatatcagtacacacaaacatattcattatgaatacacttcgttcccgtgaggcaaggcaaatatttactgaataaaaataCAATTC-CAGTCCTTAATTCTCGTACATT---TCGTTT--GT--CAA-TT-TC--------T--AAT-AAGT-GGGGGC--TCAA--TATTCAAAT------TACCGAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT--TTTGTTTTGCTATAA-T-TTATTTGTAATCCCATA---CTGAACACTCGA-TGT-T--A-CATGTCAGT----AT-ACACAAATG-TA-TC-TAT-T-GTGAATA--CACTT-CGTT--CCTGGTGATGC-AAGGCAAATA-GT-TA-CTGAAAAAAAAAGAA-AAGCAAAAA--TATTTTTCCGACCCTGACCATACATTATTTTGAAGAT--GTAA-TCGGAAACAGAACTATTtcgggccaaaaaacat
gi|7 : ATTGATTC-CAGTCTGTA-TTCTCGTACACT---TCCTTT--TTA-CAA-AC-TC--------TTAAAT-AAAT-TCAGGC--TCGA--c
gi|7 : attttgtaatattttggTA---CTGAA-ATTGGA-TGT-T--A-CATGTCAGTTATAGC-ACGCAAA------TT-CATGT-AT--ATA--C-----CG-T--GAAGGTGATGC-AAAGCAAATA-TT-TG-CTGAATAAAAAA-agaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagtactgaaattggatgttacatgtcagttatagcacgcaaattcatgtatataccgtgaaggtgatgcaaagcaaatatttgctgaataaaaaatagaatttgtctaactcctatcctactttttttttttt
gi|8 : attttgtaatattttggattgattccagtctgtattctcgtacacttcctttttacaaactcttaaataaattcaggctcgaagaatggtgttgaattggcggtcgcgcatcaatgatggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcgggaggggggggcgggtacatttacctaccctagTACACT---TCGTTT--CT--TAA-TT-TTAAAAAATTT--AAC-AAGT-TCTGGC--TCAA--TATTCAAAT------Ttagaatttgtctaactcctatcctactttttttttttt
gi|8 : -----T--TTTG----GTTT-AT-T-TTATTTTTTACCCAAAA---CTGAACACTTGA-TGC-T--A-TATGTCAGT----TC-TAACAAATG-TA-TA-TAT-A-GTGTATA--AGTTT-CACT--CCTGGTGATCC-AAGGCAAATA-TT-TT-CTGATTTAAAAA-AT-AAaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattttttggtttattttattttttacccaaaactgaacacttgatgctatatgtcagttctaacaaatgtatatatagtgtataagtttcactcctggtgatccaaggcaaatattttctgatttaaaaaataatggaaccccaaaga
gi|9 : tacacttcgtttcttaattttaaaaaatttaacaagttctggctcaatattcaaattaaaggaaattttcagagttttcggaagccataaagcaggtaaaatcagttgtcagaatgtcattGT-TTGGGC--TCGA--TATTCAAAT------TATTGAAATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----A--TTCG----GTTT-AA-T-TTATTTTTAACCAAATA---CTGAACACTCGA-TGT-T--G-CATGTCAGT----AT-ACACAAATG-TA-TA-TAT-T-GTGAATA--Ctggaaccccaaaga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGTGGGTTTTTTTCCCAGTACTATGGGACTGGGGCCAGGGGACCTTACAATTGGGAAAATTAACAATATAA
Unaligned ( gi|19 ): GTGTTTTTTTCCCCCATTAATTTGGGACTGGGGGCTGGGGCCCT
Unaligned ( gi|20 ): TTTGGCTTCCAAGTATGTTCTTATAATAGTAAATGG
Unaligned ( gi|21 ): TATACTTTGTCATTGGAACATCGGGAACCAAGT