lowQualScore : 1 4444 2222 1 1 1 11 4444444444 22222 2 1 777777777777777777777777777777777777 1 11 1 111111 111 11 222222 222 222222222222222222 22222 111111 1 2 2222222 1 111111 11 1111 1 1 1 1 11 1 1 111 11
lowQualScore : 5 2222 3 4444 3 3 6 66 33 3333333333 33333 2 0 0 2 0 999999999999999999999999999999999999 9 0 2 44 4 0 3 777777 000 4 2 2 0 11 8 888888 1 3 222 0 8 8 0 3 888888888888888888 11111 1 999999 1 55 4 0 9999999 5 0 2 777777 44 3333 7 3 0 5 0 2 0 2 33 0 8 8 0 8 8 8 8 777 99
lowQualScore : . .... . .... . . . .. .. .......... ..... . . . . . .................................... . . . .. . . . ...... ... . . . . .. . ...... . . ... . . . . . .................. ..... . ...... . .. . . ....... . . . ...... .. .... . . . . . . . . .. . . . . . . . . ... ..
lowQualScore : 5 5555 0 3333 3 3 0 22 88 8888888888 22222 0 2 0 5 2 000000000000000000000000000000000000 8 0 2 22 0 0 2 000000 888 0 2 0 8 88 0 888888 0 2 000 8 0 0 8 6 000000000000000000 00000 7 222222 0 77 7 3 6666666 0 0 2 555555 33 7777 0 3 0 0 0 2 5 5 88 0 8 0 2 0 0 0 0 666 00
consensus : NNNNNNNNNNNAAAAATATGGATAATCAAGGATTNACT--TTTAA-GGT-TC-GTTTGNGACCACCTCATCAAG----------GACTTTT--ACCTGCATGTAA-TCG-CTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCAT-CCACG-TATCCAAAATAANCTATACAAATTAAAATG--ATACACTTAGATGC-CTATCANGGAGAGGTTCCAAAATATATT-AAGTG----GCGTCAGGTTACACCAAGTGTA--CCAACTGGCAG-GTGC-AAACATTTTGC-AGGGGGG---G-----GGGGNGTTAACATGCA------TACGTGGTTGGACAATTTCCCTTATTC------NTAGCAGAAA-CACATCACGTATGCTCTAAAG-TTCAATAATTTACCTACCTTACAGCTGCATGCATA-AAGCATCAAATCTGACGA-TTCTTACGGATTTT-TCGAACAACAATA--TAT-CGCG-GTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCCT-TTTCAAGAAGCAC
Reference ( gi|2 ) : TTGAAAGACCTAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAAACTACCTCATCAAG----------GATTTTT--AACTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AACATA---------TATTTGT-TAGTGCATCAT-CTACG-TATCCAAAATAAACTTTACAAATTAAAATG--ATACACTTAGATAT-CTATCATGGAGAAGTTCCGAAATATTTT-AAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGT-AGGAGGG---G-----GGGGGGTTGACATGCA------TACGTGGTTGGACAGTTTCCCATATTC------ATAGCAGAAA-CACATCACGTATACTCTGAAG-TTCAATAATTTACCTTTCTTACAGTTACATTCATA-AAGCATCAAATCTGATGA-TTCTTACAGATTTT-TTGAACTACAATA--TAT-CGCA-GTGATGATAGATCGC-TAA-TTAGC-TTGTC-AAATGTATATTTCC--TTTCAAGAAGCAC
gi|1 : AAAAATATGGATAATCAAGAATTCA-T--TTTAA-GGT-CCTCTTTGAGAACACCTCATCAAG----------GACTTTT--A-CTGCATGTAA-TCG-CTGCAACATTTAATA--GTAATAATATAAAGAGAAGTTCTTTGA-TTGTGCAACAT-CCATA-TATCCAAAATAAACTGTACAAATTAAAATG--GTACACCTAGATGT-CTATCATGGAGTGGTTCCAAAATATATT-AAGTG----TGGTCGGGAGTCACTAGGT---------CTTGC---GCGC-A-------------GGGAA---G-----GGGGTGTAAAAATGCA------TAC-----------ATTTCCCTTATTC------CTAGCAGAAAGCACATCACGTATGCTCGAGAGTTTCAATAATTTACCTACCTTACAGCTGCATGCATACAAGTATGAAATCTGATGA-TTCTTACTGATTTTCCCGAACAACAATA--TATCCGCG-GTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTCT-TTTCC--TTTCCAGAA
gi|3 : tgagaactactttcaattcatacatccatgcctcttgctgttcttcaaccccccccccccacacacacacacacacttctctggctcaacgaaagatatgttttatcatcacgggtcagaatgagattttatcAAAATA-GG----TTAAAGATTAACTATTTTAAAGGT-TCAGTGTGAAACTACCTCATCAAG----------GATTTTTTAAACTGCATGTAAATCG-CTGCAACATTCAA-AAATTGA-AACATA---------TATTTGTATAGTGCA-CATTCTACGGTATCCAAAATAAACTTTACAAATTAAAATG--ATCAACTTAGATATTCTATCATGGAGAAGTTCCGAAATATTTTTAAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTTAGGAGGG---G-----GGGGG-TTGACATGCA------TACGTGGT-GGACA--TTCCCATATTC------ATAGCAGAAA-CACATCACGTATACTCTGAAG-TTCAATAATTTACCTTCTTTACAGTTACATTCATA-AAGCATCAAATCTGATGATTTCTTACAGATTTT-TTGAACTA-AATA--TAT-CGCA-GTGATGATAGATCGCTTAA-TTAGCTTTGTC-AAATGTATATTTCCT-TTTCAAGAAGCACcc
gi|6 : T--TTTAA-GGTATC-GTTTGTGAC--CCTCATGAAA----------GACTTT---ACCTGCATATAT-TTG-ATCCAATAT--AA-A--TTAA-AAGACA---------T-------TAGTGCATCAG-CCACA-TATCCAAAATAATCTATACAAATTA-----------ACTTAGGTGC-CTCTCAAAGAAAGACTCAAAAAGACATT-AGGTG----------GACTACACAAAGTATA--TCAACTGATAG-GTGCAAAATATGTTGC------GG---G-----GGATAAT--ATATGCATACATGTACGTGGTT---CA-TTTCGCTTATGCCTAGCTATAGCAGAA
gi|4 : caGTTTGTGACCCCTTCATCAAGAAATTGAATAGATTTTT--ACCTGCATGTGATTAGTCTG-----------A--T-GA-----TA----------ATTT-T-AAGTGCTTCTT-CCGCT-TATCCAAAAAAATCAATACAAATTAAAATGATATACACTTTGATGC-CTATCGAGGAAAGGTTCCAAGACAAATG-AAGTGTACAACGCTAGGTAGCCCCGGGGGTAGACCAGCAGACAGTGGGA-AAGCATCTTGC-TGGAGGG---GCTGCTGGGGCG-TAACA--CA------TACATGGTTGGACAATTTACT-TATTT-------TAGCA-AAG-CATATCATGTATGCTC-------TCAGTAATTCA
gi|5 : tT-AAGTG----GTGTCAGGTTACACCAAATGT---CGAACTGGCAG-GTGC-AAACATTTTGA-AGGGGGGCGGG-----GGGGAGTTAACACGCA------TACGTGGTTGGACAATTTCCCTTATTC------CTAGCACAAA-CACATCACGTATGCTCTAAAG-TTCAATAACTTACCTACCTTACA----CATGCATA-AAGCATCAAATCTGACGA-TTTTTGCGGATTTT-TCGAACAACAATA--TAT-C-CAGGTAATGGGAGATCGC-TAA-TTACC-TTGTC-AAATGTCTTTTTCC--TTTCAGGAAGCAC
gi|15 : ACATGCA------TACGTGATTGGACAGTTTCCT-TATTC------
gi|14 : gttat-TTCTTACGGATTTT-TCGAACAACAATATATAT-CCCG-GTGATGAc
gi|8 : CG-GTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTCTTTTTCC--TTTCAAGAACCAgatat
gi|9 : ccTGAGAGATCGC-TAAATTAGC-TTGTCCAAATGTCTTTTTCCTTTTTCAAGAAtatatcatggaaccatacaaaggcaaagtcaacccgccaacttacctgaagctatatgaaatcaaaatacatgtaggtagtcaaaatgcatgcact
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AATACTTTTTCAATTCTCATACCAATAGCAATGGCCTGCCTGTGCCGTTGCTCTACCTCACCCCCCCCCCCCCCCCGCCCCACCTTCCTTCCCCATAGGTCTGTCAACGAAAATCTATATTGAGTTATTTTCAGTCACGTGGGTCAGGAATGATGGATTTTATTCCACTAAAAAACTTGTGTGGATATTATAGTTCTGTGTTTAATGGCCATCTATGAACGATAACATCTCAAGTCAAGACATTTTTAC
Unaligned ( gi|10 ): TCATGTAGTAACTACCTTCAATTCATACATCTCCATCCCATCCCAGCCTCTTGCTGTTCTCTCTCTCTCCCAAACCTTCTGTCTCAACGGAAGAGAT
Unaligned ( gi|11 ): TGTTTGTGCCCCTTTCACAAAGAAATTGAATAGATTTTTACCTCCAACATGTAAATCAATATAATCTCTTTAAATCTTTTTTCAC
Unaligned ( gi|12 ): AAGGATTTTTTTCACGTCATAATATTTTTATGTAACACGGATGGTCATTTGAAGAA
Unaligned ( gi|13 ): TGCCTGCAGGTAATGAAGTAAACAATCCACCATTAGCTACCATGACCAGTATGAT
Unaligned ( gi|16 ): ATCAAAATAGGTAGTCAAAAATGCATGCACTCTG
Alignments
lowQualScore : 4444 11 1 1 111 3333333333 111 1 1111111 33333333333333333 11 222222 222 111 111111111 1 1 11 22
lowQualScore : 7 4444 0 0 1 6 33 0 0 999 1 5 5555555555 111 6 0 8 2222222 1 99999999999999999 6 8 99 1 4 0 11 0 8 1 1 6 555555 1 888 6 6 1 666 888888888 1 5 1 0 77 22 33 4 1 5 8 77 8 4 8888 2 0 2 8 1 8 1 11 8 6 6 6 6 22
lowQualScore : . .... . . . . .. . . ... . . .......... ... . . . ....... . ................. . . .. . . . .. . . . . . ...... . ... . . . ... ......... . . . . .. .. .. . . . . .. . . .... . . . . . . . .. . . . . . ..
lowQualScore : 3 7777 7 7 0 7 88 0 0 000 0 6 0000000000 888 0 8 0 8888888 0 88888888888888888 0 0 44 0 4 8 00 6 0 0 4 7 777777 0 777 7 7 5 555 333333333 0 7 4 1 99 11 77 3 0 0 0 44 0 0 0000 5 0 0 0 4 0 4 00 0 7 7 7 7 22
consensus : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAG-TTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCGCTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGG---G-----GGGGNGT-TA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
Reference ( family-228 ) : NNNNNNNNNNNAAAAATATGGATAATCAAGGATTNACT--TTTAA-GGT-TC-G-TTTGNGACCACCTCATCAAG----------GACTTTT--ACCTGCATGTAA-TCGCTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAANCTATACAAATTAAAATG--ATACACTTAGATGC-CTATCANGGAGAGGTTCCAAAATATATT-AAGTG----GCGTCAGGTTACACCAAGTGT--ACCAACTGGCAG-GTGC-AAACATTTTGCAGGGGGG---G-----GGGGNGT-TA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCNTAGCAGAAA-CACATCACGTATGCTCTAAAGTT-CAATAATTTACCTACCTTACAGCTGCATGCATA-AAGCATCAAATCTGACGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
gi|1 : AAAAATATGGATAATCAAGAATTCA-T--TTTAA-GGT-CC-TCTTTGAGAACACCTCATCAAG----------GACTTTT--AC-TGCATGTAA-TCGCTGCAACATTTAATA--GTAATAATATAAAGAGAAGTTCTTTGA-TTGTGCAACATCC-ATA-TATCCAAAATAAACTGTACAAATTAAAATG--GTACACCTAGATGT-CTATCATGGAGTGGTTCCAAAATATATT-AAGTG----TGGTCGGGAGTCACTAGGT---------CTTGC---GCGC-A------------GGGAA---G-----GGGGTGT-AA-AAATGCA--TAC-----------ATTTCCCTTATTCCTAGCAGAAAGCACATCACGTATGCTCGAGAGTTTCAATAATTTACCTACCTTACAGCTGCATGCATACAAGTATGAAATCTGATGA-TTCTTACTGATTTTCCCGAACAACA--ATATATCCGCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTC-TTTTCC-TTTCC-AGAA
gi|14 : tgagaactactttcaattcatacatccatgcctcttgctgttcttcaaccccccccccccacacacacacacacacttctctggctcaacgaaagatatgttttatcatcacgggtcagaatgagattttatc-TTCTTACGGATTTTTC-GAACAACAATATATATC-CCGGTGATGAGATATcc
gi|15 : GT-TATACATGCA--TACGTGATTGGACAGTTT-CCTTATTC
gi|2 : AAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAG-TTTGAAACTACCTCATCAAG----------GATTTTT--AACTGCATGTAAATCGCTGCAACATTCAA-A--TTGA-AACATA---------TATTTGT-TAGTGCATCATCT-ACG-TATCCAAAATAAACTTTACAAATTAAAATG--ATACACTTAGATAT-CTATCATGGAGAAGTTCCGAAATATTTT-AAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTAGGAGGG---G-----GGGGGGT-TG-ACATGCA--TACGTGGTTGGACAGTTTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTTCTTACAGTTACATTCATA-AAGCATCAAATCTGATGA-TTCTTACAGATTTTTT-GAACTACA--ATATATC-GCAGTGATGATAGATCGC-TAA-TTAGC-TTGTC-AAATGTATATTTCC--TTTCAAGAAGCACc
gi|3 : ttgaaagacctAAAATA-GG----TTAAAGATTAACTATTTTAAAGGT-TCAG-TGTGAAACTACCTCATCAAG----------GATTTTTTAAACTGCATGTAAATCGCTGCAACATTCAA-AAATTGA-AACATA---------TATTTGTATAGTGCA-CATTCTACGGTATCCAAAATAAACTTTACAAATTAAAATG--ATCAACTTAGATATTCTATCATGGAGAAGTTCCGAAATATTTTTAAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTTAGGAGG---G-----GGGGGGT-TG-ACATGCA--TACGTGGT-GGACA--TTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTCTTTACAGTTACATTCATA-AAGCATCAAATCTGATGATTTCTTACAGATTTTTT-GAACTA-A--ATATATC-GCAGTGATGATAGATCGCTTAA-TTAGCTTTGTC-AAATGTATATTTCC-TTTTCAAGAAGCAC
gi|4 : -G-TTTGTGACCCCTTCATCAAGAAATTGAATAGATTTTT--ACCTGCATGTGA-TT--------AGTCTG-A--T------GATA----------ATTT-T-AAGTGCTTCTTCC-GCT-TATCCAAAAAAATCAATACAAATTAAAATGATATACACTTTGATGC-CTATCGAGGAAAGGTTCCAAGACAAATG-AAGTGTACAACGCTAGGTAGCCCCGGGGGTAGACCAGCAGACAGTGGGA-AAGCATCTTGCTGGAGGG---GCTGCTGGGGCG--TA-ACA--CA--TACATGGTTGGACAATTT-ACTTATT-TTAGCA-AAG-CATATCATGTATGCTC------T-CAGTAATTCA
gi|5 : tT-AAGTG----GTGTCAGGTTACACCAAATGT---CGAACTGGCAG-GTGC-AAACATTTTGAAGGGGGGCGGG-----GGGGAGT-TA-ACACGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCACAAA-CACATCACGTATGCTCTAAAGTT-CAATAACTTACCTACCTTACA----CATGCATA-AAGCATCAAATCTGACGA-TTTTTGCGGATTTTTC-GAACAACA--ATATATC-CAGGTAATGGGAGATCGC-TAA-TTACC-TTGTC-AAATGTCTTTTTCC--TTTCAGGAAGCAC
gi|6 : T--TTTAA-GGTATC-G-TTTGTGACC--CTCATGAAA----------GACTTT---ACCTGCATATAT-TTGATCCAATAT--AA-A--TTAA-AAGACA---------T-------TAGTGCATCAGCC-ACA-TATCCAAAATAATCTATACAAATTA-----------ACTTAGGTGC-CTCTCAAAGAAAGACTCAAAAAGACATT-AGGTG----------GACTACACAAAGTAT--ATCAACTGATAG-GTGCAAAATATGTTGC-----GG---G-----GGATAATATATGCATACATGTACGTGGTT---C-ATTTCGCTTATGCCTAGC
gi|8 : caCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTCTTTTTCC--TTTCAAGAACCAtatagcagaa
gi|9 : ccTGAGAGATCGC-TAAATTAGC-TTGTCCAAATGTCTTTTTCCTTTTTCAAGAAtatatcatggaaccatacaaaggcaaagtcaacccgccaacttacctgaagctatatgaaatcaaaatacatgtaggtagtcaaaatgcatgcact
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATACTTTTTCAATTCTCATACCAATAGCAATGGCCTGCCTGTGCCGTTGCTCTACCTCACCCCCCCCCCCCCCCCGCCCCACCTTCCTTCCCCATAGGTCTGTCAACGAAAATCTATATTGAGTTATTTTCAGTCACGTGGGTCAGGAATGATGGATTTTATTCCACTAAAAAACTTGTGTGGATATTATAGTTCTGTGTTTAATGGCCATCTATGAACGATAACATCTCAAGTCAAGACATTTTTAC
Unaligned ( gi|10 ): TCATGTAGTAACTACCTTCAATTCATACATCTCCATCCCATCCCAGCCTCTTGCTGTTCTCTCTCTCTCCCAAACCTTCTGTCTCAACGGAAGAGAT
Unaligned ( gi|11 ): TGTTTGTGCCCCTTTCACAAAGAAATTGAATAGATTTTTACCTCCAACATGTAAATCAATATAATCTCTTTAAATCTTTTTTCAC
Unaligned ( gi|12 ): AAGGATTTTTTTCACGTCATAATATTTTTATGTAACACGGATGGTCATTTGAAGAA
Unaligned ( gi|13 ): TGCCTGCAGGTAATGAAGTAAACAATCCACCATTAGCTACCATGACCAGTATGAT
Unaligned ( gi|16 ): ATCAAAATAGGTAGTCAAAAATGCATGCACTCTG
Alignments
lowQualScore : 2222 11 1 1 3333333333 111 1 1111111 33333333333333333 11 222222 111 2 33333 1 11 22
lowQualScore : 7 8888 6 33 0 0 9 1 5 5555555555 111 5 8 88 8 2222222 1 99999999999999999 6 8 99 1 1 0 11 0 8 1 1 6 000000 1 888 6 6 1 0 00000 1 666 0 77 22 33 4 5 8 77 8 1 3 0 1 0 8 1 8 1 11 8 6 6 6 6 22
lowQualScore : . .... . .. . . . . . .......... ... . . .. . ....... . ................. . . .. . . . .. . . . . . ...... . ... . . . . ..... . ... . .. .. .. . . . .. . . . . . . . . . . .. . . . . . ..
lowQualScore : 3 3333 7 88 0 0 8 4 6 0000000000 888 8 0 88 0 8888888 0 88888888888888888 0 0 44 4 0 8 00 6 0 4 4 7 888888 0 333 7 7 5 0 88888 0 111 1 99 11 77 3 0 0 00 0 0 2 8 0 0 0 4 0 4 00 0 7 7 7 7 22
consensus : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
Reference ( family-228 ) : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
gi|1 : AAAAATATGGATAATCAAGAATTCA-T--TTTAA-GGT-CCTCTTTGAGAACACCTCATCAAG----------GACTTTT--AC-TGCATGTAA-TCG-CTGCAACATTTAATA--GTAATAATATAAAGAGAAGTTCTTTGA-TTGTGCAACATCC-ATA-TATCCAAAATAAACTGTACAAATTAAAATG--GTACACCTAGATGT-CTATCATGGAGTGGTTCCAAAATATATT-AAGTG----TGGTCGGGAGTCACTAGGT---------CTTGC-----GC----------GC-AGGGAAG-----GGGGTGTAA-AAATGCA--TAC-----------ATTTCCCTTATTCCTAGCAGAAAGCACATCACGTATGCTCGAGAGTTTCAATAATTTACCTACCTTACAGCTGCATGCATACAAGTATGAAATCTGATGA-TTCTTACTGATTTTCCCGAACAACA--ATATATCCGCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTC-TTTTCC-TTTCC-AGAA
gi|14 : tgagaactactttcaattcatacatccatgcctcttgctgttcttcaaccccccccccccacacacacacacacacttctctggctcaacgaaagatatgttttatcatcacgggtcagaatgagattttatc-TTCTTACGGATTTTTC-GAACAACAATATATATC-CCGGTGATGAGATATcc
gi|15 : GTTATACATGCA--TACGTGATTGGACAGTTT-CCTTATTCC
gi|2 : AAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAAACTACCTCATCAAG----------GATTTTT--AACTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AACATA---------TATTTGT-TAGTGCATCATCT-ACG-TATCCAAAATAAACTTTACAAATTAAAATG--ATACACTTAGATAT-CTATCATGGAGAAGTTCCGAAATATTTT-AAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTAGGAGGGG-----GGGGGGTTG-ACATGCA--TACGTGGTTGGACAGTTTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTTCTTACAGTTACATTCATA-AAGCATCAAATCTGATGA-TTCTTACAGATTTTTT-GAACTACA--ATATATC-GCAGTGATGATAGATCGC-TAA-TTAGC-TTGTC-AAATGTATATTTCC--TTTCAAGAAGCAC
gi|3 : ttgaaagacctAAAATA-GG----TTAAAGATTAACTATTTTAAAGGT-TCAGTGTGAAACTACCTCATCAAG----------GATTTTTTAAACTGCATGTAAATCG-CTGCAACATTCAA-AAATTGA-AACATA---------TATTTGTATAGTGCA-CATTCTACGGTATCCAAAATAAACTTTACAAATTAAAATG--ATCAACTTAGATATTCTATCATGGAGAAGTTCCGAAATATTTTTAAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTTAGGAGGG-----GGGGGGTTG-ACATGCA--TACGTGGT-GGACA--TTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTCTTTACAGTTACATTCATA-AAGCATCAAATCTGATGATTTCTTACAGATTTTTT-GAACTA-A--ATATATC-GCAGTGATGATAGATCGCTTAA-TTAGCTTTGTC-AAATGTATATTTCC-TTTTCAAGAAGCAC
gi|4 : GTTTGTGACCCCTTCATCAAGAAATTGAATAGATTTTT--ACCTGCATGTGATTAGTCTG-----------A--T------GATA----------ATTT-T-AAGTGCTTCTTCC-GCT-TATCCAAAAAAATCAATACAAATTAAAATGATATACACTTTGATGC-CTATCGAGGAAAGGTTCCAAGACAAATG-AAGTGTACAACGCTAGGTAGCCCCGGGGGTAGACCAGCAGACAGTGGGA-AAGCATCTTGCTGGAGGGGCTGCTGGGGCG-TA-ACA--CA--TACATGGTTGGACAATTT-ACTTATT-TTAGCA-AAG-CATATCATGTATGCTC------T-CAGTAATTCA
gi|5 : tT-AAGTG----GTGTCAGGTTACACCAAATGT---CGAACTGGCAG-GTGC-AAACATTTTGA-AGGGGGGCGGG-GGGGAGTTA-ACACGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCACAAA-CACATCACGTATGCTCTAAAGTT-CAATAACTTACCTACCTTAC----ACATGCATA-AAGCATCAAATCTGACGA-TTTTTGCGGATTTTTC-GAACAACA--ATATATC-CAGGTAATGGGAGATCGC-TAA-TTACC-TTGTC-AAATGTCTTTTTCC--TTTCAGGAAGCAC
gi|6 : T--TTTAA-GGTATC-GTTTGTGACC--CTCATGAAA----------GACTTT---ACCTGCATATAT-TTG-ATCCAATAT--AA-A--TTAA-AAGACA---------T-------TAGTGCATCAGCC-ACA-TATCCAAAATAATCTATACAAATTA-----------ACTTAGGTGC-CTCTCAAAGAAAGACTCAAAAAGACATT-AGGTG----------GACTACACAAAGTATA--TCAACTGATAG-GTGCAAAATATGTTGC-GGGGGAT-----AATATAT---GCATACATGTACGTGGTT---C-ATTTCGCTTATGCCTAGC
gi|8 : caCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTCTTTTTCC--TTTCAAGAACCAtatagcagaa
gi|9 : ccTGAGAGATCGC-TAAATTAGC-TTGTCCAAATGTCTTTTTCCTTTTTCAAGAAtatatcatggaaccatacaaaggcaaagtcaacccgccaacttacctgaagctatatgaaatcaaaatacatgtaggtagtcaaaatgcatgcact
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATACTTTTTCAATTCTCATACCAATAGCAATGGCCTGCCTGTGCCGTTGCTCTACCTCACCCCCCCCCCCCCCCCGCCCCACCTTCCTTCCCCATAGGTCTGTCAACGAAAATCTATATTGAGTTATTTTCAGTCACGTGGGTCAGGAATGATGGATTTTATTCCACTAAAAAACTTGTGTGGATATTATAGTTCTGTGTTTAATGGCCATCTATGAACGATAACATCTCAAGTCAAGACATTTTTAC
Unaligned ( gi|10 ): TCATGTAGTAACTACCTTCAATTCATACATCTCCATCCCATCCCAGCCTCTTGCTGTTCTCTCTCTCTCCCAAACCTTCTGTCTCAACGGAAGAGAT
Unaligned ( gi|11 ): TGTTTGTGCCCCTTTCACAAAGAAATTGAATAGATTTTTACCTCCAACATGTAAATCAATATAATCTCTTTAAATCTTTTTTCAC
Unaligned ( gi|12 ): AAGGATTTTTTTCACGTCATAATATTTTTATGTAACACGGATGGTCATTTGAAGAA
Unaligned ( gi|13 ): TGCCTGCAGGTAATGAAGTAAACAATCCACCATTAGCTACCATGACCAGTATGAT
Unaligned ( gi|16 ): ATCAAAATAGGTAGTCAAAAATGCATGCACTCTG
Alignments
lowQualScore : 2222 11 1 1 3333333333 111 1 1111111 33333333333333333 11 222222 111 2 33333 1 11 22
lowQualScore : 7 8888 6 33 0 0 9 1 5 5555555555 111 5 8 88 8 2222222 1 99999999999999999 6 8 99 1 1 0 11 0 8 1 1 6 000000 1 888 6 6 1 0 00000 1 666 0 77 22 33 4 5 8 77 8 1 3 0 1 0 8 1 8 1 11 8 6 6 6 6 22
lowQualScore : . .... . .. . . . . . .......... ... . . .. . ....... . ................. . . .. . . . .. . . . . . ...... . ... . . . . ..... . ... . .. .. .. . . . .. . . . . . . . . . . .. . . . . . ..
lowQualScore : 3 3333 7 88 0 0 8 4 6 0000000000 888 8 0 88 0 8888888 0 88888888888888888 0 0 44 4 0 8 00 6 0 4 4 7 888888 0 333 7 7 5 0 88888 0 111 1 99 11 77 3 0 0 00 0 0 2 8 0 0 0 4 0 4 00 0 7 7 7 7 22
consensus : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
Reference ( family-228 ) : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
gi|1 : AAAAATATGGATAATCAAGAATTCA-T--TTTAA-GGT-CCTCTTTGAGAACACCTCATCAAG----------GACTTTT--AC-TGCATGTAA-TCG-CTGCAACATTTAATA--GTAATAATATAAAGAGAAGTTCTTTGA-TTGTGCAACATCC-ATA-TATCCAAAATAAACTGTACAAATTAAAATG--GTACACCTAGATGT-CTATCATGGAGTGGTTCCAAAATATATT-AAGTG----TGGTCGGGAGTCACTAGGT---------CTTGC-----GC----------GC-AGGGAAG-----GGGGTGTAA-AAATGCA--TAC-----------ATTTCCCTTATTCCTAGCAGAAAGCACATCACGTATGCTCGAGAGTTTCAATAATTTACCTACCTTACAGCTGCATGCATACAAGTATGAAATCTGATGA-TTCTTACTGATTTTCCCGAACAACA--ATATATCCGCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTC-TTTTCC-TTTCC-AGAA
gi|14 : tgagaactactttcaattcatacatccatgcctcttgctgttcttcaaccccccccccccacacacacacacacacttctctggctcaacgaaagatatgttttatcatcacgggtcagaatgagattttatc-TTCTTACGGATTTTTC-GAACAACAATATATATC-CCGGTGATGAGATATcc
gi|15 : GTTATACATGCA--TACGTGATTGGACAGTTT-CCTTATTCC
gi|2 : AAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAAACTACCTCATCAAG----------GATTTTT--AACTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AACATA---------TATTTGT-TAGTGCATCATCT-ACG-TATCCAAAATAAACTTTACAAATTAAAATG--ATACACTTAGATAT-CTATCATGGAGAAGTTCCGAAATATTTT-AAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTAGGAGGGG-----GGGGGGTTG-ACATGCA--TACGTGGTTGGACAGTTTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTTCTTACAGTTACATTCATA-AAGCATCAAATCTGATGA-TTCTTACAGATTTTTT-GAACTACA--ATATATC-GCAGTGATGATAGATCGC-TAA-TTAGC-TTGTC-AAATGTATATTTCC--TTTCAAGAAGCAC
gi|3 : ttgaaagacctAAAATA-GG----TTAAAGATTAACTATTTTAAAGGT-TCAGTGTGAAACTACCTCATCAAG----------GATTTTTTAAACTGCATGTAAATCG-CTGCAACATTCAA-AAATTGA-AACATA---------TATTTGTATAGTGCA-CATTCTACGGTATCCAAAATAAACTTTACAAATTAAAATG--ATCAACTTAGATATTCTATCATGGAGAAGTTCCGAAATATTTTTAAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTTAGGAGGG-----GGGGGGTTG-ACATGCA--TACGTGGT-GGACA--TTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTCTTTACAGTTACATTCATA-AAGCATCAAATCTGATGATTTCTTACAGATTTTTT-GAACTA-A--ATATATC-GCAGTGATGATAGATCGCTTAA-TTAGCTTTGTC-AAATGTATATTTCC-TTTTCAAGAAGCAC
gi|4 : GTTTGTGACCCCTTCATCAAGAAATTGAATAGATTTTT--ACCTGCATGTGATTAGTCTG-----------A--T------GATA----------ATTT-T-AAGTGCTTCTTCC-GCT-TATCCAAAAAAATCAATACAAATTAAAATGATATACACTTTGATGC-CTATCGAGGAAAGGTTCCAAGACAAATG-AAGTGTACAACGCTAGGTAGCCCCGGGGGTAGACCAGCAGACAGTGGGA-AAGCATCTTGCTGGAGGGGCTGCTGGGGCG-TA-ACA--CA--TACATGGTTGGACAATTT-ACTTATT-TTAGCA-AAG-CATATCATGTATGCTC------T-CAGTAATTCA
gi|5 : tT-AAGTG----GTGTCAGGTTACACCAAATGT---CGAACTGGCAG-GTGC-AAACATTTTGA-AGGGGGGCGGG-GGGGAGTTA-ACACGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCACAAA-CACATCACGTATGCTCTAAAGTT-CAATAACTTACCTACCTTAC----ACATGCATA-AAGCATCAAATCTGACGA-TTTTTGCGGATTTTTC-GAACAACA--ATATATC-CAGGTAATGGGAGATCGC-TAA-TTACC-TTGTC-AAATGTCTTTTTCC--TTTCAGGAAGCAC
gi|6 : T--TTTAA-GGTATC-GTTTGTGACC--CTCATGAAA----------GACTTT---ACCTGCATATAT-TTG-ATCCAATAT--AA-A--TTAA-AAGACA---------T-------TAGTGCATCAGCC-ACA-TATCCAAAATAATCTATACAAATTA-----------ACTTAGGTGC-CTCTCAAAGAAAGACTCAAAAAGACATT-AGGTG----------GACTACACAAAGTATA--TCAACTGATAG-GTGCAAAATATGTTGC-GGGGGAT-----AATATAT---GCATACATGTACGTGGTT---C-ATTTCGCTTATGCCTAGC
gi|8 : caCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTCTTTTTCC--TTTCAAGAACCAtatagcagaa
gi|9 : ccTGAGAGATCGC-TAAATTAGC-TTGTCCAAATGTCTTTTTCCTTTTTCAAGAAtatatcatggaaccatacaaaggcaaagtcaacccgccaacttacctgaagctatatgaaatcaaaatacatgtaggtagtcaaaatgcatgcact
blockSeqs : T . C AT A A A A A AAATTGAATA TTA A T TC . AATTGA C TATTTGTA T T GG A T AT T T T T TACAAC G AGA T A T A CTGCT G TAT TG TG AG C G . TG . T A T . T G . A AT . T A T C TT
blockSeqs : . . C . . . A A A . T A . TC . TTGA C TATTTGT T . G A T . . T T . GT G A . . T T CGGG G TG . TG AG C G . TG . T A T . . A . T . . . . . . T
blockSeqs : . . . . T C . T T . . . TTAA G ATTTT T . T T A . . A A . GT G . . . C T . C TG . TG AA C C . TA . A . G . . A . T . . . . . . .
blockSeqs : T . . . . . . . T G T . . A T A . . A A . GT G . . . T . . A TA . TG AA C . . . . . G . A . . . . . . .
blockSeqs : . . A . . . G . . T TA . G A . . . . . .
blockSeqs : . . T A .
blockSeqCons : TTGA*** ATTTT************ TG AG **
originalCons : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATA---------TATTTGT-TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC-TTTTCAAGAAGCAC
finalCons : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-ATTGA---AANATAATTTT------------TAGTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGGGGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAGTTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC--TTTCAAGAAGCAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATACTTTTTCAATTCTCATACCAATAGCAATGGCCTGCCTGTGCCGTTGCTCTACCTCACCCCCCCCCCCCCCCCGCCCCACCTTCCTTCCCCATAGGTCTGTCAACGAAAATCTATATTGAGTTATTTTCAGTCACGTGGGTCAGGAATGATGGATTTTATTCCACTAAAAAACTTGTGTGGATATTATAGTTCTGTGTTTAATGGCCATCTATGAACGATAACATCTCAAGTCAAGACATTTTTAC
Unaligned ( gi|10 ): TCATGTAGTAACTACCTTCAATTCATACATCTCCATCCCATCCCAGCCTCTTGCTGTTCTCTCTCTCTCCCAAACCTTCTGTCTCAACGGAAGAGAT
Unaligned ( gi|11 ): TGTTTGTGCCCCTTTCACAAAGAAATTGAATAGATTTTTACCTCCAACATGTAAATCAATATAATCTCTTTAAATCTTTTTTCAC
Unaligned ( gi|12 ): AAGGATTTTTTTCACGTCATAATATTTTTATGTAACACGGATGGTCATTTGAAGAA
Unaligned ( gi|13 ): TGCCTGCAGGTAATGAAGTAAACAATCCACCATTAGCTACCATGACCAGTATGAT
Unaligned ( gi|16 ): ATCAAAATAGGTAGTCAAAAATGCATGCACTCTG
Alignments
lowQualScore : 2222 11 1 1 3333333333 111 1 1111111 555555555555555555555 11 222222 111 11 33333 1 1 11 11
lowQualScore : 7 8888 6 33 0 0 9 1 5 5555555555 111 5 8 88 8 2222222 1 555555555555555555555 6 8 99 1 1 0 11 0 8 1 1 6 000000 1 888 6 6 1 44 6 00000 1 666 0 77 22 2 4 5 8 77 8 1 33 0 1 0 8 1 8 1 11 8 6 6 6 6 55
lowQualScore : . .... . .. . . . . . .......... ... . . .. . ....... . ..................... . . .. . . . .. . . . . . ...... . ... . . . .. . ..... . ... . .. .. . . . . .. . . .. . . . . . . . .. . . . . . ..
lowQualScore : 3 3333 7 88 0 0 8 4 6 0000000000 888 8 0 88 0 8888888 0 444444444444444444444 0 0 44 4 0 8 00 6 0 4 4 7 888888 0 333 7 7 5 00 7 88888 0 111 1 99 11 4 3 0 0 00 0 0 22 8 0 0 0 4 0 4 00 0 7 7 7 7 88
consensus : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATATA--------TTTGT-TA---GTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGG-GGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAGTTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC--TTTCAAGAAGCAC
Reference ( family-228 ) : NNNNNNNNNNNAAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAGACCACCTCATCAAG----------GATTTTT--ACCTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AANATA-A--------TTT-T-TA---GTGCATCATCC-ACG-TATCCAAAATAAACTNTACAAATTAAAATG--ATACACTTAGATGT-CTATCATGGAGAGGTTCCGAAATATATT-AAGTG----GTGTCAGGTTACACCAAGTGT---CCAACTGGCAG-GTGC-AAACATTTTGC-GGG-GGGG-----GGGGNGTTA-ACATGCA--TACGTGGTTGGACAGTTTCCCTTATTCCTAGCAGAAA-CACATCACGTATGCTCTGAAGTT-CAATAATTTACCTNCCTTACAGTTACATNCATA-AAGCATCAAATCTGATGA-TTCTTACGGATTTTTC-GAACAACA--ATATATC-GCGGTGATGAGAGATCGC-TAA-TTAGC-TTGTC-AAATGTCTTTTTCC--TTTCAAGAAGCAC
gi|1 : AAAAATATGGATAATCAAGAATTCA-T--TTTAA-GGT-CCTCTTTGAGAACACCTCATCAAG----------GACTTTT--AC-TGCATGTAA-TCG-CTGCAACATTTAATA--GTAATAATATA-AAGAGAAGTTCT-T-TGATTGTGCAACATCC-ATA-TATCCAAAATAAACTGTACAAATTAAAATG--GTACACCTAGATGT-CTATCATGGAGTGGTTCCAAAATATATT-AAGTG----TGGTCGGGAGTCACTAGGT---------CTTGC-----GC----------GC-AGG-GAAG-----GGGGTGTAA-AAATGCA--TACAT-----------TTCCCTTATTCCTAGCAGAAAGCACATCACGTATGCTCGAGAGTTTCAATAATTTACCTACCTTACAGCTGCATGCATACAAGTATGAAATCTGATGA-TTCTTACTGATTTTCCCGAACAACA--ATATATCCGCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTC-TTTTCC--TTTCCAGAA
gi|14 : tgagaactactttcaattcatacatccatgcctcttgctgttcttcaaccccccccccccacacacacacacacacttctctggctcaacgaaagatatgttttatcatcacgggtcagaatgagattttatc-TTCTTACGGATTTTTC-GAACAACAATATATATC-CCGGTGATGAGATATcc
gi|15 : GTTATACATGCA--TACGTGATTGGACAGTTT-CCTTATTCC
gi|2 : AAAAATATGG----TTAAGAATTAACT--TTTAA-GGT-TCAGTTTGAAACTACCTCATCAAG----------GATTTTT--AACTGCATGTAAATCG-CTGCAACATTCAA-A--TTGA-AACATATA--------TTTGT-TA---GTGCATCATCT-ACG-TATCCAAAATAAACTTTACAAATTAAAATG--ATACACTTAGATAT-CTATCATGGAGAAGTTCCGAAATATTTT-AAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGT-AGGAGGGG-----GGGGGGTTG-ACATGCA--TACGTGGTTGGACAGTTTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTTCTTACAGTTACATTCATA-AAGCATCAAATCTGATGA-TTCTTACAGATTTTTT-GAACTACA--ATATATC-GCAGTGATGATAGATCGC-TAA-TTAGC-TTGTC-AAATGTATATTTCC--TTTCAAGAAGCAC
gi|3 : ttgaaagacctAAAATA-GG----TTAAAGATTAACTATTTTAAAGGT-TCAGTGTGAAACTACCTCATCAAG----------GATTTTTTAAACTGCATGTAAATCG-CTGCAACATTCAA-AAATTGA-AACATATA--------TTTGTATA---GTGCA-CATTCTACGGTATCCAAAATAAACTTTACAAATTAAAATG--ATCAACTTAGATATTCTATCATGGAGAAGTTCCGAAATATTTTTAAGTG----GTGTCAGGTTACACCAAATGT---CCAACTGGCAG-GTGC-AAACATTTTGTTAGG-AGGG-----GGGGGGTTG-ACATGCA--TACGTGGT-GGACA--TTCCCATATTCATAGCAGAAA-CACATCACGTATACTCTGAAGTT-CAATAATTTACCTTCTTTACAGTTACATTCATA-AAGCATCAAATCTGATGATTTCTTACAGATTTTTT-GAACTA-A--ATATATC-GCAGTGATGATAGATCGCTTAA-TTAGCTTTGTC-AAATGTATATTTCCT-TTTCAAGAAGCAC
gi|4 : GTTTGTGACCCCTTCATCAAGAAATTGAATAGATTTTT--ACCTGCATGTGATTAGTCTG-----------A--T------GATA-A--------TTT-T-AA---GTGCTTCTTCC-GCT-TATCCAAAAAAATCAATACAAATTAAAATGATATACACTTTGATGC-CTATCGAGGAAAGGTTCCAAGACAAATG-AAGTGTACAACGCTAGGTAGCCCCGGGGGTAGACCAGCAGACAGTGGGA-AAGCATCTTGCTGGA-GGGGCTGCTGGGGCG-TA-ACA--CA--TACATGGTTGGACAATTT-ACTTATT-TTAGCA-AAG-CATATCATGTATGCTC------T-CAGTAATTCA
gi|5 : tT-AAGTG----GTGTCAGGTTACACCAAATGT---CGAACTGGCAG-GTGC-AAACATTTTGA-AGG-GGGGCGGG-GGGGAGTTA-ACACGCA--TACGTGGTTGGACAATTTCCCTTATTCCTAGCACAAA-CACATCACGTATGCTCTAAAGTT-CAATAACTTACCTACCTTACA----CATGCATA-AAGCATCAAATCTGACGA-TTTTTGCGGATTTTTC-GAACAACA--ATATATC-CAGGTAATGGGAGATCGC-TAA-TTACC-TTGTC-AAATGTCTTTTTCC--TTTCAGGAAGCAC
gi|6 : T--TTTAA-GGTATC-GTTTGTGACC--CTCATGAAA----------GACTTT---ACCTGCATATAT-TTG-ATCCAATAT--AA-A--TTAA-AAGACA--------------T-TA---GTGCATCAGCC-ACA-TATCCAAAATAATCTATACAAATTA-----------ACTTAGGTGC-CTCTCAAAGAAAGACTCAAAAAGACATT-AGGTG----------GACTACACAAAGTATA--TCAACTGATAG-GTGCAAAATATGTTGC-GGG-GGAT-----AATATAT---GCATACATGTACGTGGTT---CA-TTTCGCTTATGCCTAGC
gi|8 : caCGGTGATAAGAGATCGC-TAA-TTAGT-TTGTC-AAATGTCTTTTTCC--TTTCAAGAACCAtatagcagaa
gi|9 : ccTGAGAGATCGC-TAAATTAGC-TTGTCCAAATGTCTTTTTCCTTTTTCAAGAAtatatcatggaaccatacaaaggcaaagtcaacccgccaacttacctgaagctatatgaaatcaaaatacatgtaggtagtcaaaatgcatgcact
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATACTTTTTCAATTCTCATACCAATAGCAATGGCCTGCCTGTGCCGTTGCTCTACCTCACCCCCCCCCCCCCCCCGCCCCACCTTCCTTCCCCATAGGTCTGTCAACGAAAATCTATATTGAGTTATTTTCAGTCACGTGGGTCAGGAATGATGGATTTTATTCCACTAAAAAACTTGTGTGGATATTATAGTTCTGTGTTTAATGGCCATCTATGAACGATAACATCTCAAGTCAAGACATTTTTAC
Unaligned ( gi|10 ): TCATGTAGTAACTACCTTCAATTCATACATCTCCATCCCATCCCAGCCTCTTGCTGTTCTCTCTCTCTCCCAAACCTTCTGTCTCAACGGAAGAGAT
Unaligned ( gi|11 ): TGTTTGTGCCCCTTTCACAAAGAAATTGAATAGATTTTTACCTCCAACATGTAAATCAATATAATCTCTTTAAATCTTTTTTCAC
Unaligned ( gi|12 ): AAGGATTTTTTTCACGTCATAATATTTTTATGTAACACGGATGGTCATTTGAAGAA
Unaligned ( gi|13 ): TGCCTGCAGGTAATGAAGTAAACAATCCACCATTAGCTACCATGACCAGTATGAT
Unaligned ( gi|16 ): ATCAAAATAGGTAGTCAAAAATGCATGCACTCTG