lowQualScore : 111111111111111111111111
lowQualScore : 1 22 6666666666666666 4 2 3333 1 11 888888888888888 11 44 777777777 11 111 5555555 222222 11 22 1 1 1 222222222222222222222222 1 22 444444444444444444 44444 555 1 222 222 1 888888888888888888888888888 1 22222 2222 555555555 333 333333 77777777777777777777777777777777 11 44444444444444 333333 222 44444444 22222 33333 111 333333333333333333333333 9999999999999999999999999999999999999999999999999999999999999 333 333 2222222222 333333333
lowQualScore : 7 77 5555555555555555 0 2 0 5555 3 7 44 111111111111111 88 33 3 000000000 33 777 6666666 999999 0 00 77 0 1 99 0 0 6 444444444444444444444444 0 55 3 777777777777777777 99999 22 6 111 3 555 8 222 0 2 000000000000000000000000000 3 8 6 8 99999 2222 222222222 8 8 5 8 6 333 444444 5 5 1 00000000000000000000000000000000 22 88888888888888 66 0 5 6 4 66 222222 4 777 66 4 4 77777777 00000 55 77777 8888 777 222 888888888888888888888888 4 5555555555555555555555555555555555555555555555555555555555555 000 2 4 2 111 4 55 4 4 55 7777777777 4 8 0 4 555555555
lowQualScore : . .. ................ . . . .... . . .. ............... .. .. . ......... .. ... ....... ...... . .. .. . . .. . . . ........................ . .. . .................. ..... .. . ... . ... . ... . . ........................... . . . . ..... .... ......... . . . . . ... ...... . . . ................................ .. .............. .. . . . . .. ...... . ... .. . . ........ ..... .. ..... .... ... ... ........................ . ............................................................. ... . . . ... . .. . . .. .......... . . . . .........
lowQualScore : 0 55 5555555555555555 0 5 0 3333 3 3 00 333333333333333 33 77 7 000000000 88 555 5555555 888888 2 00 88 0 2 00 2 0 8 000000000000000000000000 0 55 2 222222222222222222 33333 55 0 666 3 888 0 000 5 5 222222222222222222222222222 2 0 0 0 00000 8888 444444444 0 0 0 0 0 333 888888 7 7 7 11111111111111111111111111111111 00 77777777777777 99 1 0 7 8 11 000000 7 666 77 0 0 88888888 88888 55 99999 5555 555 000 000000000000000000000000 0 5555555555555555555555555555555555555555555555555555555555555 000 8 0 8 888 0 55 0 0 55 3333333333 0 0 3 4 999999999
consensus : AAATTGCAACGGGTACAAACTATCTGNAGGCGTAGGATG-GTCANCCGGCACTAAAAGG-CACGATC-ATATTCACACCG-GT--T-C-GTAA--GACCTTC--ATTGG--TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCT---TGTGCA---AT-TACCTA-CA-A-GGCCGTTCACAGCATCGGG-ACCTACGTACCT-TAGTGAACTTG-AT-CCAAC-TTA--TTTNTCC-GTCNACGAACATTG-GCGATCAGAA-AAAAAACGGGATGCTTTT--T--AAAAGTTCCTCGGACTAGAA--CGAAG-TCATT-TG-GAA---ACAGAACGCTTT--GACT-ATTTTGC-GCCAA-TAC-TGTGG-AACGCC-TTA---CCATTTAGGATT-ACGNT---GTG-CCAA-ATCACTGGA-CATTTT--TTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAAG-GCTTGC-TTTT--N-------A-TATCT--AATT-CCAACA--AGA-CAGTTCTTAGNTTTTAGGTTGAAAAT-TT-ATAT--ACT-AAACA--A-TTT--TTTTATAGC--GA-CT----ATCAT-TG-N-ATGCTCACT--------T-T-------------T-ATGCATGT----------------ATGTA--TAT------AT-TATATAT-TGT----ATG------TAAAAGCGCTTTAG--AGATT-TTGA---TTGATT-A--G-GG-CG--CT-ATA-----C-A-AATTTTAGTAT-TATA---TAT--TTATTATT
Reference ( gi|2 ) : AAAATACAA--AATACAAAATACTTGCAG-CA-AGGATGCATCAGTCG-CACTAAAAAGTTATGATC-ATATTCACACCG-GCTTTTC-GTAA--GACCTTC--ATTGGCCTTCCGGTAGAGTAT--C-CATTTCAATTCAAAG--TTCT---TGTGCA---AT-CACCTACCA-A-GGCCGTTCACAGCATCGCG-ACCTACGTACCT-TAGCGAACTTGCATGCCAAC-TTACATTCCTCC-GTCGGCGAACATTGAGCAATCAGAA-AAAAAACAGGATGCTTTT--TCAAAAAGTTCCTCGGACTAGGAACCGAAG-TCAAT-TG-GAA---ACAGGACGCTCTCGGACTTATCTTGG-GCCAAGCACGTGTGG-A-TGCC-T-A---CCATTTGGGATT-GC-CT---GTG-CCAA-ATCATTGCA-CATTTTCTTTTAAACAACTCCCTTAAAGA-C-TCATT---------------------TCT-TTAAGGGCTTGC-CTTT--T-------A-T-TCT--AATT-CCAATA--AGAGCAGTTCTTAGATTTTAGATTGAGGAT-TT-ATAT-TACT-TAACA--A-TTT--TTTTATAGC--G--TT----ATCCT-TG-T-ATGCTCACT--------T-T-------------T-ATGCATGT----------------ATAT---TAT-----CAT-TATATAT-TGC----ATG------TAAAAGCGCTTTAGC-AGATT-TTGAC-TTTGATT-A--G-GG-CG--C--ATA-----C-A-AATTTTAGTAT-TAT----TAT--TTATTATT
gi|1 : AAATTACAACGGGTACAAACTATCTGCAGGCATAGGATG-ATCAGTCGGCACTAAAAG--TATGATCCATAT-CACACCGTGTTGTTCAGTA---GACCTTCCAATTGGC-TTCCGGTAGAGTATATCGCATT-CAATTCAAAGCTTTCT---TGTGCT---AT--ACCTGACATATGGCCGTTCACAGCATCGAGGAGCCACGTACCT-TAG-GAACT-G-AT-CCAAA-TTA--TTGATCCTGTTCGCGAACATTGAGAAGT---AATAGAAAACGGAATGCTTTT-----AAACGTTCCCCGGACTAGAA--CGAAGATCA-T-TGAGAAC--ACAGATCGCT-TCG-ACT-ATCGTGGCGCCAA-CAC-TGTGG-AATGCC-TTATCCCCATTGGGGATTTGCGCT---GTGGCCAATATCATTGCAACATTTT---TTAAACAA-TCC--TAAAGATC-TC-TT---------------------TCT-TTAAG--CTTGC-TTCT--T-------AATATCT--AATT-CCAATA--AG--CAGTCTTGAAGTTTTAGAT-GAGGATCTT-ATATACGCTATAACA-----TT--TTTTATAGTTGA--TTCAAAATCCT-TG-TTATGCTCACT--------T-T-------------T-ATGCATGT----------------ATGT---C-T-----CA--TATAT-T-TAG----ATGAGTAGATATAAGCGCTTTA---AGA-T-TTGATATTTGATT-A--G-GGTCG--C--ATATCATGC-A-AATTTTAGTAT-TATATAATAC--TTAATATT
gi|3 : atctgtctgcagtggccacaagctgtatttctccttgtgaggtaacaaggctaagagaggtacagattacctcatcgacgatcgatacatgcaaaatcattaataacatgctctctgtcacattcaaagactatgactaggcctaactgcattgttacttggccttttccaaaacagtgctacctaacTGCAA--AATACA--------GGAG-CG-AGAATA-GTCACCCA-CATTAAAAGG-CATGACC-AC-TTCAAATCG-G---TGC--TAATCAACCTTT--AATGG-TTTCCAGTTCAGCAT--CGTAT--------AAAG--CACTTAATGTACA------CGCCTA-TA-A-AGCAGTCTACAGAGTTG-G-ACTAACTTACTC-AAGTGAAGT--CATTACCCC-TTAC---TGTTC-GCCTAGAAACGT---GTGATCAAAA-AA-----GGGATGCTTCTGGTC-----GTTCCCCGGATTtctat
gi|5 : catgtgtctgctgtgtcaaattcctgtcttttttaagataagaaatagaagaagaatcagacatatcattgacgaaactacttgcaaaacgttgatacatgcttttgtaacatcaagactagactatgccaacacgttgcttgccatgaaaaaccacaatgtgTAAAAAGT-ACGATC-ATATT-ACACCG-GTACT---GAAA--GACCTTC--ATTGAA-TTCTGGTAAAGTAT--TGCATT-CAATTCAAAG--TTCT---TATGCA------TACCTA-CA-A-GGCTGTTCACAGCTTCA-G-ACCTA--TATCT-TAGAGAAC-TG-AT-CCAATGTTA---TTCTCC-ATC-ACGAACATTGTG--ATCAG-----AAAACAGGATGCTTTT-----AAAAATTCCTTGGGCTAGAAG--GAAG-TCATT-TG-GAA---ACA-GACGCTTT--GAC-TATTTCGC-GCCAATACCGTG-GA-A-CGCCTT-A---CCA-TTAGGATT-ATGTT---GTG-CCAA-ATCACTAGA-CAATTTcttactaagacttatggaaacattcagcgcctatacta
gi|4 : AATTCAAAG--TTCT---TGTGCATACATGTACCTAC-A-A-GGCCATTCACAG-ATTTGG-ACCTACATATATATACTGA--TT------CAACCTTA-ATT--TCC-GTCG-CGAACATTG--CGATCAGAA-AA----CAGGATGCTTTT--T-AAAAA--TCCTCAGACTCGAAA--GAAGTTCAATACG-GAA---ACAGAA-GCTTT--GA---ATTTTG----CAA-TAC-TGTGGAA-CGCT-T-A---CAA-CTAGGATT-ACGTT---GTG-CCAA-ATCACTAGA-AA----CTTTTAAACAA--ACCCTAAACA-C-GCTTT---------------------TCT-GTAA--TCTTGC-TTTTAAT-------A-T-TTTTAAATT-CC-ACA--AGACT--TTCTT-GGTTTTAG-CTAAAAAT-TT-ATAT-
gi|9 : ggtattgatcgatCTTTT-----AAAGGTTCCTCGGACCAGAA--CGAAG-TCAa
gi|23 : TC--TTAAAAAGTTCCTCGGACTAGAA--TGAAG-TCATA-TG-GAAGATACAGtatgaatatagaagtttgactattgactgtggaacgccttaaaaataggtttatgttgtgcatttttaaaacaaaccctaaagagtcgtttctttaatatttaattcaactagacattcttagtatttaaacatattcttttgtagcaactatcattgaatgcatgctcacttttac
gi|19 : acG-TCATA-TG-GAA---ACAG-ACGCTTT--GACT-ATTTTGC-ACCAA-TAC-TGTGG-AACACC-TTA---CCATT-AGGATT-AT-GTAATGTG-CCAA-ATCACTGGA-CATTTTa
gi|8 : G-A-TGCC-TTA---CCATT-AGGATT-AC-G----GTG-CCAA-ATCATTGCA-CATTTT----TAAACAACTCC--TAAAGA-C-TCATTGGTACCGTATATGATTTATATTCT-TTAAG--CTTGC---TT--A-------A-TATCT--AATT-C-AATA--AGA-CAGT-CTTAGATTTTAG-TTGAAAAT-TT-ATAT--AGT-AAACA--AATTC--TTTTATAGC--GA-CT----ATCAT-TGAT-A-GCTCACT--------T-T-------------T-A
gi|6 : ttcgccaaagttgtaaaaTTTAAACAAACCGCTAAGAGA-CGTAATT---------------------TCTCTTAAGCCCTTGAGCTTT--A-------A-TATCT--AGTTGCCAA-AGCAAAACA-TTCTTCAGTTTTAGGT-GAACAT-TTTATAT-TA----GACATGA-TTTCGTTTTGTAGCA-A--CT----A--CA-TG-A-ATGCCCACT--------TGTCG-----------T-ATG-ATGTAGTAATGTAATAGCAGATATAA-TATATGTGTAC-TATATGT-TTTA---ATG------TAAAAGCGCTTTTCCGAGATTCTTG----TTGATT-AGCG-GG-CG--CT-ATA-----C-ACAATTT
gi|7 : TAAACAAACCC--TAGAGA-C-GTATT---------------------TC--TTAA--GTTTGC-TTTT--A-------A-TATCT--A--T-CCAACA--A-AACA--TCTTAGTTTTTAGG-TGAACAT-TT-ATA--TATT-AGACAT-A-TTC--TTTTGTAGCA-A--CT----ATCA--TG-A-ATGCCCACTGTGTACTAT-TGTGTGATGTAATGT-ATACAGAT----------------ATATA--TAT------ATGTATATAT-TATGTTAATG------T-AAAGCGCTTTCG--AGA-T-TTGAT-GTTGATT-A--G-GG-CG--CT-AT------C-A-AA-TTTATTGT-CACCG--TAT--TTA
gi|13 : CCTAAAGA-C-TCATT---------------------T---------GCTTGC-TTTT--A-------A-TATCT--AATT-C-AACA--AGA-CA-TTCTTAGTTTTCAGGT-GAAAAT-T--ATAA-TA----GACA--T-ACT--CTTTGTAGC--AA-TT----ATCCT-CG-A-ATGCTCACTATTA----C-T-------------T-ATGTATGT----------------ATGT---GTG-----CA--TGTGTA--TGT----ATG------TAgata
gi|14 : aAGA-C-TCATT---------------------TCA-TTAA--GCTTGC-CTTT--TTAAAAAAA-A-TCT--AA-T-CCAACA--AGA-CAAATCTTAGTTTTTAGG-TGAAAAA-TT-ATA--------AGCA--A--------------------CT----ATCAT-TG-A-ATGCTCACT--------T-T-------------T-A
gi|10 : agacttatttctatacgact-TCT--AATT-C-AACA--AGA-CA-TTCTTAGATTTTAGGT-GAAAAT-TT-ATAT--ACT-AAACA--AATTC--TTTTATAGC--GA-CT----ATCAT-TG-A-ATGCTCACT--------T-T-------------T-ATGCATGC----------------ATGTA--TAT------ATATATGTATATAT----ANN------NNNNNNNNNNNNNNN-NNNNN-NNNNN-NNNNNNN-N--N-NN-NN--N--NNN-----N-N-NNNTTTAGTAT-TAT----TAT--ctta
gi|11 : ataCAATA--AGA-CAGT-CTTAGATTTTAGAT-GAGGGT-TT-ATAT--ACT-AAACA--A-TTT--TTTTATAGC--GA-TT----ATCCT-TG-T-ATGCTCACT--------T-T-------------T-ATGCATGT----------------ATGTA--TA----------TATATAT-TG---------------NNNNNNNNNNNNNN-NNNNN-NNNNN-NNNNNNN-N--N-NN-NN--N--NNN-----N-N-NNNTTTAGTAT-TAT----TATTATTATTATT
gi|12 : TCTAAGTTAATGTT-TT-ATAT--ACA-GAAAA--A-TTT--TT--ATAGC--GGATT----ATGAT-TG-T-ATGTGCTCT--------T-T-------------T-ATGCATGT----------------ATGTATGTAT------ATGTATAT-T-TG-----ATG------T-AAAGCGCTTTAG--AGATT-TTGA---TTGATT-A--G-GG-CGGCT--ATA-----C-ATATTTTTAGTAT-TATATAGTA---TTATTATattacat
gi|15 : ccT--TTTTATAGC--GA-TT----AGCATATG-T--TGCTCACT--------T-T-------------TTATGCATGT----------------ATGTATGCGT-----AAT-TATATAA-T-C----GAG------TAA--GCGCTTTAG--AGATT-T--A---TTGA---A--GCGG-CG--CCTATA-----CCA-AATTTTAGTAT-TAT----TA---TTATTATTatg
gi|21 : AAAGCGCTT-AG--AGATT-T-GA---TTGATT-A--G-GG-CG--CT-AT------C-A-AATTTTATTATATAT----TATTATTATTATTa
gi|22 : gtAAGCGCTTTAG--AGATT-TTGA---TTGATTTA--G-AT-CG--CT-ATA-----C-A-AATTTTAGTAT-ata
gi|20 : AAGCGCTTTAA--AGATT-TTTAA-TT-GATT-A--G-GG-CG--CT-GTG-----C-A-AAGTTTTGTAT-TGTA---TGT--TTggta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AATTCAACAAGACTTCTTATTTTTAGTGTGAAATTTATATATCCAGAGCATATTCTATTTGTAGCAACTATCATTGAATGCTCACTTTGACTTTTGTATGTATGTGTGTGCATGTATGTATA
Unaligned ( gi|17 ): AAACAAACCCTAAAGAAACGTTTCTTTAACCTTGCTTGTTGTACATAATTAAACAAGACATTCTGAATTTTTAAGTGATAAATTAAATATTCTTTTGTATAACTATC
Unaligned ( gi|18 ): TCTCCGCCAAATTCGTAGAACATCGGTTTACACAGATTAGACTTGTGGTCCAAATAATTGGTGAAATTTAATAATTCAAAAACTAATGATACATATATGTTTTATA
Alignments
lowQualScore : 1 3333 11 2 1111 1 444444444444444444 11 44 111 11 11 111 444444 11 222222 1 222222 11 222 3333 111 11 111 111 111 1 11 333333333333333333333 222 1111111111 1 111 2222 11111111 2222222222222 4444444444444444444444444444 22222222222 111 2222 111
lowQualScore : 6 2 6 2 1 7777 44 11 3 2222 2 0 66 2 111111111111111111 33 33 1 444 3 88 11 444 333333 8 8 8 8 5 66 3 3 9 555555 8 0 6 888888 8 55 0 777 0 8 8 6666 7 999 77 5 66 7 333 88 99 6 6 33 88 5 77 000 777 5 444 5 5 0 88 2 66 77 1 4 4 1 444444444444444444444 4 555 777 1 3333333333 555 999 44 3 8 1 666 0 2 2 888 3 3 0000 33 2 2 2 6666 9999 77 3 11111111 3 1111111111111 3 8888 3333333333333333333333333333 4 66666666666 1 7 55 3 1 55 666 3 55 3 3 3 3 7777 88 7 4 2222 555
lowQualScore : . . . . . .... .. .. . .... . . .. . .................. .. .. . ... . .. .. ... ...... . . . . . .. . . . ...... . . . ...... . .. . ... . . . .... . ... .. . .. . ... .. .. . . .. .. . .. ... ... . ... . . . .. . .. .. . . . . ..................... . ... ... . .......... ... ... .. . . . ... . . . ... . . .... .. . . . .... .... .. . ........ . ............. . .... ............................ . ........... . . .. . . .. ... . .. . . . . .... .. . . .... ...
lowQualScore : 0 5 7 3 0 7777 00 77 3 5555 0 0 55 5 222222222222222222 88 88 0 888 2 66 00 000 000000 0 0 0 0 0 22 2 2 0 444444 0 8 0 444444 0 66 8 666 8 0 0 6666 3 666 99 0 99 2 888 33 22 7 7 77 11 7 99 000 333 7 444 7 7 4 77 1 99 00 1 0 0 5 000000000000000000000 0 666 000 3 4444444444 888 000 22 1 2 0 888 4 9 9 222 1 1 1111 99 9 9 9 1111 6666 11 1 22222222 1 2222222222222 1 5555 5555555555555555555555555555 0 33333333333 7 7 00 6 7 44 444 6 00 6 6 6 6 7777 11 3 4 2222 888
consensus : AAACCACAACGNGTACAAAATACCTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGAT-CATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAG--TATCGCATT-CAATTCAAAG--TTCT---TGTGCA---AT-TACCT-AC-A-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAGCGAACT--TG-AT-CCAAC-TTA--TTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATGGAA---ACAGAACGCTTT--GACT-ATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACG--TTGT-GCCAA-ATCACTG-GACATTTT--TTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAAGG-CTT---GCTT-TTA------ATATCT---AATT-CCAA--CAAGA-CA-TTCTTAGNTTTTAGGTTGAAAAT-TTATAT-A--CTA-AA-CA--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCACT--------T-T-------------T-ATGCATGT----ATGT-------------ATAT---ATG-----TATAT-AT---T-GT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
Reference ( family-221 ) : AAATTGCAACGGGTACAAACTATCTGNAGGCGTAGGATG-GTCANCCGGCACTAAAAGGC-ACGAT-CATATTCACACCG----G---TTC-GTAA--GACCTTC--ATTGG--TTCCGGTANAG--TATCGCATT-CAATTCAAAG--TTCT---TGTGCA---AT-TACCT-AC-A-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAGTGAACT--TG-AT-CCAAC-TTA--TTTNTCC-GTCNACGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATTTGGAA---ACAGAACGCTTT--GACT-ATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACG--NTGT-GCCAA-ATCACTG-GACATTTT--TTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAAGG-CTT---GCTT-TTN------ATATCT---AATT-CCAA--CAAGA-CAGTTCTTAGNTTTTAGGTTGAAAAT-TTATAT-A--CTA-AA-CA--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCACT--------T-T-------------T-ATGCATGT----ATGT-------------ATAT---AT------TATAT-AT---T-GT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
gi|1 : AAATTACAACGGGTACAAACTATCTGCAGGCATAGGATG-ATCAGTCGGCACTAAAA-GT-ATGATCCATA-TCACACCGTGTTG---TTCAGT-A--GACCTTCCAATTGGC-TTCCGGTAGAGTATATCGCATT-CAATTCAAAGCTTTCT---TGTGCT---A--TACCTGAC-ATATGGCCGTTCACAGCATCGAGGAGCCACGTACCTTAG-GAAC---TG-AT-CCAAA-TTA--TTGATCCTGTTCGCGAACATTG-A-GA--AGTAATAGAAAACGGAATGC-TTTT--AAACGTTCCCCGGACTAGAA--CGAAGATC--ATTGAGAAC--ACAGATCGCTTC--GACT-ATCGTGGCGCCAA-CAC-TGTGGAA--TGCCTTATCCCCATTGGGGATTTGCG--CTGTGGCCAATATCATTGCAACA-TTT--TTTAAACAA---TCCTAAAGATC-TC-TT---------------------TCT-TTAA-G-CTT---GCTTCTTA------ATATCT---AATT-CCAA--TAAG--CAGTCTTGAAGTTTTAGA-TGAGGATCTTATAT-ACGCTATAA-CA-----TT--T-TTTATAGTTG-ATTCAAAATCCT----TGTTAT-GCTCACT--------T-T-------------T-ATGCATGT----ATGTCTC----------ATAT---AT------T-TAG-AT---GAGT----AGATATAAGCGCTTT--A--AGA-TTT-GATATTTGA-TTA--G-GGTC-G-CATATCATG-CA-AATTTTAGTATTA-TATAATAC--TTAATATT
gi|10 : atctgtctgcagtggccacaagctgtatttctccttgtgaggtaacaaggctaagagaggtacagattacctcatcgacgatcgatacatgcaaaatcattaataacatgctctctgtcacattcaaagactatgactaggcctaactgcattgttacttggccttttccaaaacagtgctacctaac------ATATCT---AATT-C-AA--CAAGA-CA-TTCTTAGATTTTAGGT-GAAAAT-TTATAT-A--CTA-AA-CA--AATTC--T-TTTATAG-CG-ACT----ATCAT----TG-AAT-GCTCACT--------T-T-------------T-ATGCATGC----ATGT-------------ATAT---ATA-----TATGT-ATATAT-AN----NNNNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TAT--tctat
gi|11 : CAA--TAAGA-CAGT-CTTAGATTTTAGAT-GAGGGT-TTATAT-A--CTA-AA-CA--A-TTT--T-TTTATAG-CG-ATT----ATCCT----TG-TAT-GCTCACT--------T-T-------------T-ATGCATGT----ATGT-------------ATA------------TATAT-AT---T-G-------NNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TATTATTATTATT
gi|12 : TCTAAGTTAATGTT-TTATAT-A--CAG-AA-AA--A-TTT--T-T--ATAG-CGGATT----ATGAT----TG-TAT-GTGCTCT--------T-T-------------T-ATGCATGT----ATGT-------------ATGT---ATA-----TGTAT-AT---T-TG----ATGT-AAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-CGG-C----TATA-CATATTTTTAGTATTA-T---ATA---GTATTATTattacat
gi|13 : ccCCTAAAGA-C-TCATT---------------------T--------G-CTT---GCTT-TTA------ATATCT---AATT-C-AA--CAAGA-CA-TTCTTAGTTTTCAGGT-GAAAAT-T---AT-A--ATA-GA-CA--T-ACT--C-TTTGTAG-CA-ATT----ATCCT----CG-AAT-GCTCACT--------A-T-------------T-ACTTATGT----ATGT-------------ATGT---GTG-----CATGT-GTA--T-GT----ATGTAatatg
gi|14 : aAGA-C-TCATT---------------------TCA-TTAAG--CTT---GCCT-TTTTAAAAAAAATCT---AAT--CCAA--CAAGA-CAAATCTTAGTTTTTAGG-TGAAAAA-TTATA------------------------------AG-CA-ACT----ATCAT----TG-AAT-GCTCACT--------T-T-------------T-A
gi|15 : agacttatttctatacgactT--T-TTTATAG-CG-ATT----AGCATA---TG-T-T-GCTCACT--------T-T-------------TTATGCATGT----ATGT-------------ATGCGTAAT------TATATAAT---C-G-----A-GT--AAGCGCTTT--AG-AGATTT---A---TTGA---A--GCGG-C-GCC----TATACCA-AATTTTAGTATTA-T----TA---TTATTATTctta
gi|16 : ---AATT-C-AA--CAAGA-C--TTCTTA-TTTTTAGTGTGAAA-T-TTATAT-AT-CCA-GAGCAT-A-TTC--TATTTGTAG-CA-ACT----ATCAT----TG-AAT-GCTCACT--------T-T-------------G-ACTTTTGT----ATGT-------------ATGT---G-------TGTGC-A----T-GT----ATGTAa
gi|17 : AAACAAACCC--TAAAGA-A-ACGTT---------------------TCT-TTAA-C-CTT---GCTT-GTT------GTACAT---AATT--AAA--CAAGA-CA-TTCTGAATTTTTAAG-TGATAAA-TTAAAT-A--TT-----------CTT--T-TGTATA-----ACT----ATCta
gi|19 : G-TC--ATATGGAA---ACAGA-CGCTTT--GACT-ATT-TTGCACCAA-TAC-TGTGGAA--CACCTTA---CCA-TTAGGA-TTATGTAATGT-GCCAA-ATCACTG-GACATTTT--
gi|2 : TACAAAATACTTGCAG-CA-AGGATGCATCAGTCG-CACTAAAAAGTTATGAT-CATATTCACACCG----GCTTTTC-GTAA--GACCTTC--ATTGGCCTTCCGGTAGAG--TATC-CATTTCAATTCAAAG--TTCT---TGTGCA---AT-CACCT-ACCA-A-GGCCGTTCACAGCATCG-CGACCTACGTACCTTAGCGAACT--TGCATGCCAAC-TTACATTCCTCC-GTCGGCGAACATTGAGCAATCAG-AA-AAAAAACAGGATGCTTTTTCAAAAAGTTCCTCGGACTAGGAACCGAAG-TC--AATTGGAA---ACAGGACGCTCTCGGACTTATC-TTGGGCCAAGCACGTGTGGA---TGCCT-A---CCATTTGGGA-TTGC---CTGT-GCCAA-ATCATTG-CACATTTTCTTTTAAACAACTCCCTTAAAGA-C-TCATT---------------------TCT-TTAAGGGCTT---GCCT-TTT------AT-TCT---AATT-CCAA--TAAGAGCAGTTCTTAGATTTTAGATTGAGGAT-TTATATTA--CTT-AA-CA--A-TTT--T-TTTATAG-CG--TT----ATCCT----TG-TAT-GCTCACT--------T-T-------------T-ATGCATGT----ATAT--------------TATC--AT------TATAT-AT---T-GC----ATGTAAAAGCGCTTT--AGCAGATTTT-GACT-TTGA-TTA--G-GG-C-G-C-----ATA-CA-AATTTTAGTATTA-T----TAT--TTATTATT
gi|20 : aaaatacaaaaAAGCGCTTT--AA-AGATTTTTAA---TTGA-TTA--G-GG-C-G-C----TGTG-CA-AAGTTTTGTATTG-T---ATGT--TT
gi|21 : tattttaatacgAAAGCGCTT---AG-AGATTT--GA---TTGA-TTA--G-GG-C-G-C----TAT--CA-AATTT---TATTA-T---ATATTATTATTATTt
gi|22 : gtAAGCGCTTT--AG-AGATTTT-GA---TTGATTTA--G-AT-C-G-C----TATA-CA-AATTTTAGTATattata
gi|23 : CTCTTA--AAAAGTTCCTCGGACTAGAA--TGAAG-TC--ATATGGAAGATACAGAggta
gi|3 : aAAACCACAATGTGTGCAAAATA-CAGGAG-CG-AGAATA-GTCACCCA-CATTAAAAGGC-ATGAC-CAC-TTCAAATCG----G---TGC--TAATCAACCTTT--AATGGT-TTCCAGTTCAG--CATCGTAT--------AAAG--CACTTAATGTACA------CGCCT-AT-A-A-AGCAGTCTACAGAGTT--GGACTAACTTACTCAAGTGAAGTCATT-AC-CC--C-TTA---CTGTTC-GCCTAGAAACGT---GTGATCAA-AA-AA-----GGGATGC-TTCT--GGTCGTTCCCCGGATTCTTA--CTAAG-AC--TTATGGAA---ACA
gi|4 : catgtgtctgctgtgtcaaattcctgtcttttttaagataagaaatagaagaagaatcagacatatcattgacgaaactacttgcaaaacgttgatacatgcttttgtaacatcaagactagactatgccaacacgttgcttgccatgaaGGTATTG---ATCG-AT---AATTCAAAG--TTCT---TGTGCATACATGTACCT-AC-A-A-GGCCATTCACAG-ATTT-GGACCTACATA---TA-TATACT---G-AT-TCAACCTTA--ATT-TCC-GTCG-CGAACATTG--CGATCAG-AA-AA----CAGGATGCTTTTT--AAAAAT-CCTCAGACTCGAA--AGAAG-TTCAATACGGAA---ACAGAA-GCTTT--GA---ATT-TTGC---AA-TAC-TGTGGAA--CGC-TTA---CAACT-AGGA-TTACG--TTGT-GCCAA-ATCACTA-GAAA--CT--TTTAAACAAA--CCCTAAACA-C-GCTTT---------------------TCT-GTAA-T-CTT---GCTT-TTA------ATATTTTTAAATT-CC-A--CAAGA-C-TTTCTT-GGTTTTA-GCTAAAAAT-TTATAT-A--ttcagcgcctatacta
gi|5 : TAAAAAGT-ACGAT-CATATT-ACACCG----G---TACTGAAA--GACCTTC--ATTGAA-TTCTGGTAAAG--TATTGCATT-CAATTCAAAG--TTCT---TATGCA------TACCT-AC-A-A-GGCTGTTCACAGCTTCA-G-ACCTA--TATCTTAGAGAACT---G-AT-CCAATGTTA--TT-CTCC-ATC-ACGAACATTG--TGATCAG-AA-AA----CAGGATGCTTTT---AAAAATTCCTTGGGCTAGAA--GGAAG-TC--ATTTGGAA---ACAGA-CGCTTT--GACT-ATT-TCGCGCCAA-TAC-CGTGGAA--CGCCTTA---CCA-TTAGGA-TTATG--TTGT-GCCAA-ATCACTA-GACAATTT--
gi|6 : --TTTAAACAAACCGCTAAGAGA-CGTAATT---------------------TCTCTTAAGC-CCTTGAGC-T-TTA------ATATCT---AGTTGCCAAAGCAAAA-CA-TTCTTCAGTTTTAGG-TGAACAT-TT-TAT-A--TTA-GA-CATGA-TTTCGT-TTTGTAG-CA-ACT----A-CA-----TG-AAT-GCCCACT--------TGTCG-----------T-ATG-ATGTAGTAATGTAATAGCAGATATAATAT---ATGTGTACTATAT-GT---T-TTA---ATGTAAAAGCGCTTTTCCG-AGATTCT-TG---TTGA-TTAGCG-GG-C-G-C----TATA-CACAATTT
gi|7 : TAAACAAACCC--TAGAGA-C-GTATT---------------------TCT-T--AAG-TTT---GCTT-TTA------ATATCT---A--T-CCAA--CAAAA-CA--TCTTAGTTTTTAGG-TGAACAT-TTATAT-A--TTA-GA-CAT-A-TTC--T-TTTGTAG-CA-ACT----ATCA-----TG-AAT-GCCCACTGTGTACTAT-TGTGTGATGTAATGT-ATACAGAT----ATAT-------------ATAT---ATG-----TATAT-AT---T-ATGTTAATGT-AAAGCGCTTT--CG-AGA-TTT-GATG-TTGA-TTA--G-GG-C-G-C----TAT--CA-AA-TTTATTGTCACC---GTAT--TTA
gi|8 : CGCCAA-AGT-TGTAAAAGATGCCTTA---CCATT-AGGA-TTACG----GT-GCCAA-ATCATTG-CACATTTT--T--AAACAA--CTCCTAAAGA-C-TCATTGGTACCGTATATGATTTATATTCT-TTAAG--CTT---GCTT---A------ATATCT---AATT-C-AA--TAAGA-CAGT-CTTAGATTTTAG-TTGAAAAT-TTATAT-A--GTA-AA-CA--AATTC--T-TTTATAG-CG-ACT----ATCAT----TG--ATAGCTCACT--------T-T-------------T-Agata
gi|9 : ttTTTT--AAAGGTTCCTCGGACCAGAA--CGAAG-TC--ATATGAAT---ATAGAA-G-TTT--GACT-A---TTG--------AC-TGTGGAA--CGCCTTA---AAA-ATAGGT-TTATG--TTGT-G-CA---------------TTT--TTAAAACAAA--CCCTAAAGA-G-TCGTT---------------------TCT-TTA------------------------ATATTT---AATT--CAA--CTAGA-CA-TTCTTAGT-------------AT-T----------TA-AA-CAT-A-TTC--T-TTTGTAG-CA-ACT----ATCATTGAATG-CAT-GCTCACT--------T-T-------------T-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCTCCGCCAAATTCGTAGAACATCGGTTTACACAGATTAGACTTGTGGTCCAAATAATTGGTGAAATTTAATAATTCAAAAACTAATGATACATATATGTTTTATA
Alignments
lowQualScore : 1 11 1111 1 1 1 1 333333333333333333 11 11 11 11 11 111 4444444 22 1 111111 1 1111111 11 22222 1111111111 111 111 111 111 111 11 44444444444444444444444444444444 111111111 11 1111 11111111 2222222222222 2222222222222 111 2222222222222 111 2222 111
lowQualScore : 44 2 1 11 7777 3 3 7 0 0 3 55 888888888888888888 33 00 1 3 11 3 88 11 444 0000000 8 8 8 8 5 33 3 8 3 888888 8 0 6 9999999 8 66 33333 0 9999999999 7 999 77 5 66 3 5 333 000 99 6 999 88 5 77 000 777 5 000 5 5 0 88 5 77 5 77 1 4 4 1 33333333333333333333333333333333 777 222222222 555 3 9 44 3 444 3 1 77 0 2 2 888 3 3 3 7777 33 2 2 2 6666 9999 77 3 3 11111111 3 1111111111111 8888 9999999999999 4 000 4 9999999999999 1 7 55 3 1 55 666 3 55 3 3 3 3 7777 88 7 4 2222 555
lowQualScore : .. . . .. .... . . . . . . .. .................. .. .. . . .. . .. .. ... ....... . . . . . .. . . . ...... . . . ....... . .. ..... . .......... . ... .. . .. . . ... ... .. . ... .. . .. ... ... . ... . . . .. . .. . .. . . . . ................................ ... ......... ... . . .. . ... . . .. . . . ... . . . .... .. . . . .... .... .. . . ........ . ............. .... ............. . ... . ............. . . .. . . .. ... . .. . . . . .... .. . . .... ...
lowQualScore : 33 0 0 00 3333 3 3 0 0 0 2 88 888888888888888888 88 22 0 8 00 2 66 00 000 0000000 0 0 0 0 0 00 2 0 2 666666 0 8 0 4444444 0 44 44444 8 6666666666 3 666 99 0 99 6 0 888 333 22 7 444 11 7 99 000 333 7 111 7 7 4 77 1 99 1 00 1 0 0 5 44444444444444444444444444444444 000 111111111 888 3 2 22 1 777 1 0 11 4 9 9 222 1 1 1 0000 99 9 9 9 1111 6666 11 1 1 22222222 1 2222222222222 5555 0000000000000 0 333 0 5555555555555 7 7 00 6 7 44 444 6 00 6 6 6 6 7777 11 3 4 2222 888
consensus : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCT---TGTGCA---AT-CACCT-AC-A-A-GGCCGTTCACAGCATCG-GGACCTACGTACCT-TAG-GAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATTTTG-CGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGATT-ACGT--TGTG-CCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA-G-CTT---GCTT-TT------AATATCT---AATT-CCAA--CAAGA-CA-T-TCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
Reference ( family-221 ) : AAACCACAACGNGTACAAAATACCTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCT---TGTGCA---AT-TACCT-AC-A-A-GGCCGTTCACAGCATCG-GGACCTACGTACCT-TAGCGAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATTTTG-CGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGATT-ACGT--TGTG-CCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA-GGCTT---GCTT-TT------AATATCT---AATT-CCAA--CAAGA-CA-T-TCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
gi|1 : AAATTACAACGGGTACAAACTATCTGCAGGCATAGGATG-ATCAGTCGGCACTAAAA-GT-ATGATCCATAT-CACACCGTGTTG---TTCAGTA---GACCTTCCAATTGGC-TTCCGGTAGAGTATATCGCATT-CAATTCAAAGCTTTCT---TGTGCT---AT--ACCTGAC-ATATGGCCGTTCACAGCATCGAGGAGCCACGTACCT-TAG-GAACT---G-AT-CCAAA-TT--ATTGATCCTGTTCGCGAACATTG-A-GA--AGTAATAGAAAACGGAATGCTTTT---AAACGTTCCCCGGACTAGAA--CGAAGATC--AT-TGAGAAC--ACAGATCGCTTC--GAC-TATCGTGGCGCCAA-CAC-TGTGGAA--TGCCTTATCCCCATTGGGGATTTGCGC--TGTGGCCAATATCATTGCAACATTT--TTT-AAACAA---TCCTAAAGATC-TC-TT---------------------TCT-TTAA-G-CTT---GCTTCTT------AATATCT---AATT-CCAA--TAAG--CA-G-TCTTGAAGTTTTAGA-TGAGGATCTTATA-TACGCTATAA-C-A-----TT--T-TTTATAGTTG-ATTCAAAATCCT----TGTTAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGTCTC----------ATAT-ATT--TAGA-TGA-----GT----AGATATAAGCGCTTT--A--AGA-TTT-GATATTTGA-TTA--G-GGTC-G-CATATCATG-CA-AATTTTAGTATTA-TATAATAC--TTAATATT
gi|10 : atctgtctgcagtggccacaagctgtatttctccttgtgaggtaacaaggctaagagaggtacagattacctcatcgacgatcgatacatgcaaaatcattaataacatgctctctgtcacattcaaagactatgactaggcctaactgcattgttacttggccttttccaaaacagtgctacctaacATATCT---AATT-C-AA--CAAGA-CA-T-TCTT-AGATTTTAGG-TGAAAAT-TTATA-TA--CTA-AA-CAA--A-TTC--T-TTTATAG-CG-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------TATGCATGC----ATGT-------------ATAT-ATA--TATG-T-ATATATAN----NNNNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TAT--tctat
gi|11 : CAA--TAAGA-CA-G-TCTT-AGATTTTAGAT-GAGGGT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ATT----ATCCT----TG-TAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATA-------TATA-T-AT---TG-------NNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TATTATTATTATT
gi|12 : TCTAAGTTAATGTT-TTATA-TA--CAG-AA-A-A--A-TTT--T-T--ATAG-CGGATT----ATGAT----TG-TAT-GTGCTC-T--------T-T-------------TATGCATGT----ATGT-------------ATGT-ATA--TGTA-T-AT---TTG----ATGT-AAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-CGG-C----TATA-CATATTTTTAGTATTA-T---ATA---GTATTATTattacat
gi|13 : ccCCTAAAGA-C-TCATT---------------------T---------GCTT---GCTT-TT------AATATCT---AATT-C-AA--CAAGA-CA-T-TCTT-AGTTTTCAGGT-GAAAAT-T---A-TA--ATA-GA-C-A--T-ACT--C-TTTGTAG-CA-ATT----ATCCT----CG-AAT-GCTCAC-T--------A-T-------------TACTTATGT----ATGT-------------ATGT-GTG--CATG-T-GTA--TGT----ATGTAatatg
gi|14 : aAGA-C-TCATT---------------------TCA-TTAA-G-CTT---GCCT-TTTTAAAAAAAATCT---AAT--CCAA--CAAGA-CA-AATCTT-AGTTTTTAGG-TGAAAAA-TTATA-------------------------------AG-CA-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------TA
gi|15 : agacttatttctatacgactT--T-TTTATAG-CG-ATT----AGCATA---TG-T-T-GCTCACTT--------T-T-------------TATGCATGT----ATGT-------------ATGC-GTAATTATA-TAAT---CG-----A-GT--AAGCGCTTT--AG-AGATTT---A---TTGA---A--GCGG-C-GCC----TATACCA-AATTTTAGTATTA-T----TA---TTATTATTctta
gi|16 : ---AATT-C-AA--CAAGA-C--T-TCTT-A-TTTTTAGTGTGAAA-T-TTATA-TAT-CCA-GAGC-AT-A-TTC--TATTTGTAG-CA-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------GACTTTTGT----ATGT-------------ATGT-GTG--TGCA--------TGT----ATGTAa
gi|17 : AAACAAACCC--TAAAGA-A-ACGTT---------------------TCT-TTAA-C-CTT---GCTT-GT------TGTACAT---AATT-A-AA--CAAGA-CA-T-TCTG-AATTTTTAAG-TGATAAA-TTAAA-TA--TT------------CTT--T-TGTATA-----ACT----ATCta
gi|19 : G-TC--ATATG-GAA---ACAGA-CGCTTT--GAC-TATTTTG-CACCAA-TAC-TGTGGAA--CACCTTA---CCA-TTAGGATT-ATGTAATGTG-CCAA-ATCACTG-GACATTT--T
gi|2 : AAAATACAA--AATACAAAATACTTGCAG-CA-AGGATGCATCAGTCG-CACTAAAAAGTTATGATC-ATATTCACACCG----GCTTTTC-GTAA--GACCTTC--ATTGGCCTTCCGGTAGAGTAT--C-CATTTCAATTCAAAG--TTCT---TGTGCA---AT-CACCT-ACCA-A-GGCCGTTCACAGCATCG-CGACCTACGTACCT-TAGCGAACT--TGCATGCCAAC-TTACATTCCTCC-GTCGGCGAACATTGAGCAATCAG-AA-AAAAAACAGGATGCTTTTTCAAAAAGTTCCTCGGACTAGGAACCGAAG-TC--AATTG-GAA---ACAGGACGCTCTCGGACTTATCTTG-GGCCAAGCACGTGTGG-A--TGCC-TA---CCATTTGGGATT-GC-C--TGTG-CCAA-ATCATTG-CACATTTTCTTTTAAACAACTCCCTTAAAGA-C-TCATT---------------------TCT-TTAAGGGCTT---GCCT-TT------TAT-TCT---AATT-CCAA--TAAGAGCAGT-TCTT-AGATTTTAGATTGAGGAT-TTATATTA--CTT-AA-C-A--A-TTT--T-TTTATAG-CG--TT----ATCCT----TG-TAT-GCTCAC-T--------T-T-------------TATGCATGT----ATAT--------------TATCAT---TATA-T-AT---TGC----ATGTAAAAGCGCTTT--AGCAGATTTT-GACT-TTGA-TTA--G-GG-C-G-C-----ATA-CA-AATTTTAGTATTA-T----TAT--TTATTATT
gi|20 : AAGCGCTTT--AA-AGATTTTTAA---TTGA-TTA--G-GG-C-G-C----TGTG-CA-AAGTTTTGTATTG-T---ATGT--TT
gi|21 : tattttaatacgAAAGCGCTT---AG-AGATTT--GA---TTGA-TTA--G-GG-C-G-C----TAT--CA-AATTT---TATTA-T---ATATTATTATTATTt
gi|22 : gtAAGCGCTTT--AG-AGATTTT-GA---TTGATTTA--G-AT-C-G-C----TATA-CA-AATTTTAGTATattata
gi|23 : CTCTTA--AAAAGTTCCTCGGACTAGAA--TGAAG-TC--ATATG-GAAGATACAGAggta
gi|3 : aAAACCACAATGTGTGCAAAATACA-GGAG-CG-AGAATA-GTCACCCA-CATTAAAAGGC-ATGACC-AC-TTCAAATCG----G---TGC--TAATCAACCTTT--AATGGT-TTCCAGTTCAGCAT--CGTAT--------AAAG--CACTTAATGTACA------CGCCT-AT-A-A-AGCAGTCTACAGAGTT--GGACTAACTTACTC-AAGTGAAGTCATT-AC-CC--C-TT--A-CTGTTC-GCCTAGAAACGT---GTGATCAA-AA-AA-----GGGATGC-TTCT--GGTCGTTCCCCGGATTCTTA--CTAAG-AC--TTATG-GAA---ACA
gi|4 : catgtgtctgctgtgtcaaattcctgtcttttttaagataagaaatagaagaagaatcagacatatcattgacgaaactacttgcaaaacgttgatacatgcttttgtaacatcaagactagactatgccaacacgttgcttgccatgaaGGTATTG-AT--CG-AT---AATTCAAAG--TTCT---TGTGCATACATGTACCT-AC-A-A-GGCCATTCACAG-ATTT-GGACCTACATATATATA------C--TG-AT-TCAACCTT--AATT-TCC-GTCG-CGAACATTG--CGATCAG-AA-AA----CAGGATGCTTTTT--AAAAAT-CCTCAGACTCGAA--AGAAG-TTCAATACG-GAA---ACAGAA-GCTTT--GA---ATTTTG-C---AA-TAC-TGTGGAA--CGC-TTA---CAACT-AGGATT-ACGT--TGTG-CCAA-ATCACTA-GAAA--C--TTTTAAACAAA--CCCTAAACA-C-GCTTT---------------------TCT-GTAA--TCTT---GCTT-TT------AATATTTTTAAATT-CC-A--CAAGA-CT-T-TCTT--GGTTTTA-GCTAAAAAT-TTATA-TA--ttcagcgcctatacta
gi|5 : TAAAAAGT-ACGATC-ATATT-ACACCG----G---TACTGAAA--GACCTTC--ATTGAA-TTCTGGTAAAGTAT--TGCATT-CAATTCAAAG--TTCT---TATGCA------TACCT-AC-A-A-GGCTGTTCACAGCTTC--AGACCTA--TATCT-TAGAGAAC---TG-AT-CCAATGTT--A-TTCTCC-ATC-ACGAACATT--GTGATCAG------AAAACAGGATGC-TTTT--AAAAATTCCTTGGGCTAGAA--GGAAG-TC--ATTTG-GAA---ACAG-ACGCTTT--GAC-TATTTCG-CGCCAA-TAC-CGTGGAA--CGCCTTA---CCA-TTAGGATT-ATGT--TGTG-CCAA-ATCACTA-GACAATT--T
gi|6 : TTTAAACAAACCGCTAAGAGA-CGTAATT---------------------TCTCTTAA-GCCCTTGAGCTT-T-------AATATCT---AGTTGCCAAAGCAAAA-CA-T-TCTT-CAGTTTTAGG-TGAACAT-TT-TA-TA--TTA-GA-C-ATGA-TTTCGT-TTTGTAG-CA-ACT----A-CA-----TG-AAT-GCCCAC-T--------TGTCG-----------TATG-ATGTAGTAATGTAATAGCAGATATAATAT-ATG--TGTACT-ATA--TGTTTTAATGTAAAAGCGCTTTTCCG-AGATTCT-TG---TTGA-TTAGCG-GG-C-G-C----TATA-CACAATTT
gi|7 : TAAACAAACCC--TAGAGA-C-GTATT---------------------TCT-T--A-AGTTT---GCTT-TT------AATATCT---A--T-CCAA--CAAAA-CA-T--CTT-AGTTTTTAGG-TGAACAT-TTATA-TA--TTA-GA-C-AT-A-TTC--T-TTTGTAG-CA-ACT----ATCA-----TG-AAT-GCCCAC-TGTGTACTAT-TGTGTGATGTAATGTATACAGAT----ATAT-------------ATAT-ATG--TATA-T-AT---TATGTTAATGT-AAAGCGCTTT--CG-AGA-TTT-GATG-TTGA-TTA--G-GG-C-G-C----TAT--CA-AA-TTTATTGTCACC---GTAT--TTA
gi|8 : -CGCCAA-AGT-TGTAAAAGATGCCTTA---CCATT-AGGATT-ACG----GTG-CCAA-ATCATTG-CACATTT--TT--AAACAA--CTCCTAAAGA-C-TCATTGGTACCGTATATGATTTATATTCT-TTAA-G-CTT---GCTT---------AATATCT---AATT-C-AA--TAAGA-CA-G-TCTT-AGATTTTAG-TTGAAAAT-TTATA-TA--GTA-AA-C-A--AATTC--T-TTTATAG-CG-ACT----ATCAT----TG--ATAGCTCAC-T--------T-T-------------TAgata
gi|9 : ttTTTT--AAAGGTTCCTCGGACCAGAA--CGAAG-TC--ATATG-AAT---ATAGAA-G-TTT--GAC-TA--TTG---------AC-TGTGGAA--CGCCTTA---AAA-ATAGGTTT-ATGT--TGTG--CA---------------TT--TTTAAAACAAA--CCCTAAAGA-G-TCGTT---------------------TC------------------T-TT------AATATTT---AATT--CAA--CTAGA-CA-T-TCTT-AGT-------------AT-T----------TA-AA-C-AT-A-TTC--T-TTTGTAG-CA-ACT----ATCATTGAATG-CAT-GCTCAC-T--------T-T-------------TA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCTCCGCCAAATTCGTAGAACATCGGTTTACACAGATTAGACTTGTGGTCCAAATAATTGGTGAAATTTAATAATTCAAAAACTAATGATACATATATGTTTTATA
Alignments
lowQualScore : 1 1111 1 1 1 1 333333333333333333 11 11 11 11 11 111 3333333 11 2 222222 1 1111111 11 22222 1111111111 111 111 111 111 111 111 1 11 333333333333333333333 111111111 11 1111 11111111 2222222222222 2222222222222 111 2222222222222 111 2222 111
lowQualScore : 1 2 1 1 6 7777 3 3 7 0 0 3 55 888888888888888888 33 00 1 3 11 3 88 11 444 9999999 8 8 8 8 5 33 3 3 4 555555 8 0 6 9999999 8 66 33333 0 9999999999 666 77 5 66 3 5 333 000 99 6 6 33 88 5 77 000 777 5 000 5 5 0 88 2 77 77 1 4 4 1 444444444444444444444 44 0 55 55 55 222222222 555 999 44 3 3 55 3 1 77 0 2 2 888 3 3 3 7777 33 2 2 2 6666 9999 77 3 3 11111111 3 1111111111111 8888 9999999999999 4 000 4 9999999999999 1 7 55 3 1 55 666 3 55 3 3 3 3 7777 88 7 4 2222 555
lowQualScore : . . . . . .... . . . . . . .. .................. .. .. . . .. . .. .. ... ....... . . . . . .. . . . ...... . . . ....... . .. ..... . .......... ... .. . .. . . ... ... .. . . .. .. . .. ... ... . ... . . . .. . .. .. . . . . ..................... .. . .. .. .. ......... ... ... .. . . .. . . .. . . . ... . . . .... .. . . . .... .... .. . . ........ . ............. .... ............. . ... . ............. . . .. . . .. ... . .. . . . . .... .. . . .... ...
lowQualScore : 0 0 0 0 7 3333 3 3 0 0 0 2 88 888888888888888888 88 22 0 8 00 2 66 00 000 6666666 0 0 0 0 0 00 2 2 0 444444 0 8 0 4444444 0 44 44444 8 6666666666 666 99 0 99 6 0 888 333 22 7 7 77 11 7 99 000 333 7 111 7 7 4 77 1 99 00 1 0 0 5 000000000000000000000 99 7 55 55 55 111111111 888 000 22 1 1 44 1 0 11 4 9 9 222 1 1 1 0000 99 9 9 9 1111 6666 11 1 1 22222222 1 2222222222222 5555 0000000000000 0 333 0 5555555555555 7 7 00 6 7 44 444 6 00 6 6 6 6 7777 11 3 4 2222 888
consensus : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCTT---GTGCA---AT-CACCT-A-CA-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT-CCAA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
Reference ( family-221 ) : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCTT---GTGCA---AT-CACCT-A-CA-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT-CCAA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
gi|1 : AAATTACAACGGGTACAAACTATCTGCAGGCATAGGATG-ATCAGTCGGCACTAAAA-GT-ATGATCCATAT-CACACCGTGTTG---TTCAGTA---GACCTTCCAATTGGC-TTCCGGTAGAGTATATCGCATT-CAATTCAAAGCTTTCTT---GTGCT---AT--ACCTGA-CATATGGCCGTTCACAGCATCGAGGAGCCACGTACCTTAG-GAACT---G-AT-CCAAA-TT--ATTGATCCTGTTCGCGAACATTG-A-GA--AGTAATAGAAAACGGAATGCTTTT---AAACGTTCCCCGGACTAGAA--CGAAGATC--AT-TGAGAAC--ACAGATCGCTTC--GAC-TATCGTGGCGCCAA-CAC-TGTGGAA--TGCCTTATCCCCATTGGGGATTTGCGC--TGTGGCCAATATCATTGCAACA-TT--TTTTAAACAA---TCCTAAAGATC-TC-TT---------------------TCT-TTAA--GC--TTG--CTTCTT------AATATCT---AATT-CCAA--TAAG--C-A-GTCTTGAAGTTTTAGA-TGAGGATCTTATA-TACGCTATAA-C-A-----TT--T-TTTATAGTTG-ATTCAAAATCCT----TGTTAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGTCTC----------ATAT-ATT--TAGA-TGA-----GT----AGATATAAGCGCTTT--A--AGA-TTT-GATATTTGA-TTA--G-GGTC-G-CATATCATG-CA-AATTTTAGTATTA-TATAATAC--TTAATATT
gi|10 : atctgtctgcagtggccacaagctgtatttctccttgtgaggtaacaaggctaagagaggtacagattacctcatcgacgatcgatacatgcaaaatcattaataacatgctctctgtcacattcaaagactatgactaggcctaactgcattgttacttggccttttccaaaacagtgctacctaacATATCT---AATT-C-AA--CAAGA-C-A-TTCTT-AGATTTTAGG-TGAAAAT-TTATA-TA--CTA-AA-CAA--A-TTC--T-TTTATAG-CG-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------TATGCATGC----ATGT-------------ATAT-ATA--TATG-T-ATATATAN----NNNNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TAT--tctat
gi|11 : CAA--TAAGA-C-A-GTCTT-AGATTTTAGAT-GAGGGT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ATT----ATCCT----TG-TAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATA-------TATA-T-AT---TG-------NNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TATTATTATTATT
gi|12 : TCTAAGTTAATGTT-TTATA-TA--CAG-AA-A-A--A-TTT--T-T--ATAG-CGGATT----ATGAT----TG-TAT-GTGCTC-T--------T-T-------------TATGCATGT----ATGT-------------ATGT-ATA--TGTA-T-AT---TTG----ATGT-AAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-CGG-C----TATA-CATATTTTTAGTATTA-T---ATA---GTATTATTattacat
gi|13 : ccCCTAAAGA-C-TCATT---------------------T---------GC--TTG--CTT-TT------AATATCT---AATT-C-AA--CAAGA-C-A-TTCTT-AGTTTTCAGGT-GAAAAT-T---A-TA--ATA-GA-C-A--T-ACT--C-TTTGTAG-CA-ATT----ATCCT----CG-AAT-GCTCAC-T--------A-T-------------TACTTATGT----ATGT-------------ATGT-GTG--CATG-T-GTA--TGT----ATGTAatatg
gi|14 : aAGA-C-TCATT---------------------TCA-TTAA--GC--TTG--CCT-TTTTAAAAAAAATCT---AA-T-CCAA--CAAGA-CAA-ATCTT-AGTTTTTAGG-TGAAAAA-TTATA-------------------------------AG-CA-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------TA
gi|15 : agacttatttctatacgactT--T-TTTATAG-CG-ATT----AGCATA---TG-T-T-GCTCACTT--------T-T-------------TATGCATGT----ATGT-------------ATGC-GTAATTATA-TAAT---CG-----A-GT--AAGCGCTTT--AG-AGATTT---A---TTGA---A--GCGG-C-GCC----TATACCA-AATTTTAGTATTA-T----TA---TTATTATTctta
gi|16 : ---AATT-C-AA--CAAGA-C---TTCTT-A-TTTTTAGTGTGAAA-T-TTATA-TAT-CCA-GAGC-AT-A-TTC--TATTTGTAG-CA-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------GACTTTTGT----ATGT-------------ATGT-GTG--TGCA--------TGT----ATGTAa
gi|17 : AAACAAACCC--TAAAGA-A-ACGTT---------------------TCT-TTAA--CC--TTG--CTT-GT------TGTACAT---AATT--AAA--CAAGA-C-A-TTCTG-AATTTTTAAG-TGATAAA-TTAAA-TA--TT------------CTT--T-TGTATA-----ACT----ATCta
gi|19 : G-TC--ATATG-GAA---ACAGA-CGCTTT--GAC-TATT-TTGCACCAA-TAC-TGTGGAA--CACCTTA---CCA-TTAGGA-TTATGTAATGT-GCCAA-ATCACTG-GACATTT--T
gi|2 : AAAATACAA--AATACAAAATACTTGCAG-CA-AGGATGCATCAGTCG-CACTAAAAAGTTATGATC-ATATTCACACCG----GCTTTTC-GTAA--GACCTTC--ATTGGCCTTCCGGTAGAGTAT--C-CATTTCAATTCAAAG--TTCTT---GTGCA---AT-CACCT-ACCA-A-GGCCGTTCACAGCATCG-CGACCTACGTACCTTAGCGAACT--TGCATGCCAAC-TTACATTCCTCC-GTCGGCGAACATTGAGCAATCAG-AA-AAAAAACAGGATGCTTTTTCAAAAAGTTCCTCGGACTAGGAACCGAAG-TC--AATTG-GAA---ACAGGACGCTCTCGGACTTATC-TTGGGCCAAGCACGTGTGG-A--TGCC-TA---CCATTTGGGA-TTGC-C--TGT-GCCAA-ATCATTG-CACATTTTCTTTTAAACAACTCCCTTAAAGA-C-TCATT---------------------TCT-TTAAGGGC--TTG--CCT-TT------TAT-TCT---AATT-CCAA--TAAGAGC-AGTTCTT-AGATTTTAGATTGAGGAT-TTATATTA--CTT-AA-C-A--A-TTT--T-TTTATAG-CG--TT----ATCCT----TG-TAT-GCTCAC-T--------T-T-------------TATGCATGT----ATAT--------------TATCAT---TATA-T-AT---TGC----ATGTAAAAGCGCTTT--AGCAGATTTT-GACT-TTGA-TTA--G-GG-C-G-C-----ATA-CA-AATTTTAGTATTA-T----TAT--TTATTATT
gi|20 : AAGCGCTTT--AA-AGATTTTTAA---TTGA-TTA--G-GG-C-G-C----TGTG-CA-AAGTTTTGTATTG-T---ATGT--TT
gi|21 : tattttaatacgAAAGCGCTT---AG-AGATTT--GA---TTGA-TTA--G-GG-C-G-C----TAT--CA-AATTT---TATTA-T---ATATTATTATTATTt
gi|22 : gtAAGCGCTTT--AG-AGATTTT-GA---TTGATTTA--G-AT-C-G-C----TATA-CA-AATTTTAGTATattata
gi|23 : CTCTTA--AAAAGTTCCTCGGACTAGAA--TGAAG-TC--ATATG-GAAGATACAGAggta
gi|3 : aAAACCACAATGTGTGCAAAATACAGG-AG-CG-AGAATA-GTCACCCA-CATTAAAAGGC-ATGACC-AC-TTCAAATCG----G---TGC--TAATCAACCTTT--AATGGT-TTCCAGTTCAGCAT--CGTAT--------AAAG--CACTTAATGTACA------CGCCT-A-TA-A-AGCAGTCTACAGAGTTG-G-ACTAACTTACTCAAGTGAAGTCATT-AC-CC--C-TT--ACT-GTTC-GCCTAGAAACGT---GTGATCAA-AA-AA-----GGGATGCTTCT---GGTCGTTCCCCGGATTCTTA--CTAAG-AC--TTATG-GAA---ACA
gi|4 : catgtgtctgctgtgtcaaattcctgtcttttttaagataagaaatagaagaagaatcagacatatcattgacgaaactacttgcaaaacgttgatacatgcttttgtaacatcaagactagactatgccaacacgttgcttgccatgaaGGTATTG-AT--CG-AT---AATTCAAAG--TTCTT---GTGCATACATGTACCT-A-CA-A-GGCCATTCACAG-ATTT-GGACCTACATA---TAT-ATACT---G-AT-TCAACCTT--AATT-TCC-GTCG-CGAACATTG--CGATCAG-AA-AA----CAGGATGCTTTTT--AAAAAT-CCTCAGACTCGAA--AGAAG-TTCAATACG-GAA---ACAGAA-GCTTT--GA---ATT-TTGC---AA-TAC-TGTGGAA--CGC-TTA---CAACT-AGGA-TTACGT--TGT-GCCAA-ATCACTA-GAAA--C--TTTTAAACAAA--CCCTAAACA-C-GCTTT---------------------TCT-GTAA--TC--TTG--CTT-TT------AATATTTTTAAATT-CC-A--CAAGA-C-T-TTCTT--GGTTTTA-GCTAAAAAT-TTATA-TA--ttcagcgcctatacta
gi|5 : TAAAAAGT-ACGATC-ATATT-ACACCG----G---TACTGAAA--GACCTTC--ATTGAA-TTCTGGTAAAGTAT--TGCATT-CAATTCAAAG--TTCTT---ATGCA------TACCT-A-CA-A-GGCTGTTCACAGCTTC--AGACCTA--TATCTTAGAGAAC---TG-AT-CCAATGTT--A-TTCTCC-ATC-ACGAACATT--GTGATCAG------AAAACAGGATGC-TTTT--AAAAATTCCTTGGGCTAGAA--GGAAG-TC--ATTTG-GAA---ACAG-ACGCTTT--GAC-TATT-TCGCGCCAA-TAC-CGTGGAA--CGCCTTA---CCA-TTAGGA-TTATGT--TGT-GCCAA-ATCACTA-GACAATT--T
gi|6 : TTTAAACAAACCGCTAAGAGA-CGTAATT---------------------TCTCTTAA--GCCCTTGAGCTT-T-------AATATCT---AGTTGCCAAAGCAAAA-C-A-TTCTT-CAGTTTTAGG-TGAACAT-TT-TA-TA--TTA-GA-C-ATGA-TTTCGT-TTTGTAG-CA-ACT----A-CA-----TG-AAT-GCCCAC-T--------TGTCG-----------TATG-ATGTAGTAATGTAATAGCAGATATAATAT-ATG--TGTACT-ATA--TGTTTTAATGTAAAAGCGCTTTTCCG-AGATTCT-TG---TTGA-TTAGCG-GG-C-G-C----TATA-CACAATTT
gi|7 : TAAACAAACCC--TAGAGA-C-GTATT---------------------TCT-T-AA--GT--TTG--CTT-TT------AATATCT---A--T-CCAA--CAAAA-C-A--TCTT-AGTTTTTAGG-TGAACAT-TTATA-TA--TTA-GA-C-AT-A-TTC--T-TTTGTAG-CA-ACT----ATCA-----TG-AAT-GCCCAC-TGTGTACTAT-TGTGTGATGTAATGTATACAGAT----ATAT-------------ATAT-ATG--TATA-T-AT---TATGTTAATGT-AAAGCGCTTT--CG-AGA-TTT-GATG-TTGA-TTA--G-GG-C-G-C----TAT--CA-AA-TTTATTGTCACC---GTAT--TTA
gi|8 : CGCCAA-AGT-TGTAAAAGATGCCTTA---CCATT-AGGA-TTACG----GT-GCCAA-ATCATTG-CACATTT--TT--AAACAA--CTCCTAAAGA-C-TCATTGGTACCGTATATGATTTATATTCT-TTAA--GC--TTG--CTT---------AATATCT---AATT-C-AA--TAAGA-C-A-GTCTT-AGATTTTAG-TTGAAAAT-TTATA-TA--GTA-AA-C-A--AATTC--T-TTTATAG-CG-ACT----ATCAT----TG--ATAGCTCAC-T--------T-T-------------TAgata
gi|9 : ttTTTT--AAAGGTTCCTCGGACCAGAA--CGAAG-TC--ATATG-AAT---ATAGAA-G-TTT--GAC-TA---TTG--------AC-TGTGGAA--CGCCTTA---AAA-ATAGGT-TTATGT--TGT-G-CA---------------TT--TTTAAAACAAA--CCCTAAAGA-G-TCGTT---------------------TC-------------------T-TT------AATATTT---AATT--CAA--CTAGA-C-A-TTCTT-AGT-------------AT-T----------TA-AA-C-AT-A-TTC--T-TTTGTAG-CA-ACT----ATCATTGAATG-CAT-GCTCAC-T--------T-T-------------TA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCTCCGCCAAATTCGTAGAACATCGGTTTACACAGATTAGACTTGTGGTCCAAATAATTGGTGAAATTTAATAATTCAAAAACTAATGATACATATATGTTTTATA
Alignments
lowQualScore : 1 1111 1 1 1 1 333333333333333333 11 11 11 11 11 111 3333333 11 2 222222 1 1111111 11 22222 1111111111 111 111 111 111 111 111 1 11 333333333333333333333 111111111 11 1111 11111111 2222222222222 2222222222222 111 2222222222222 111 2222 111
lowQualScore : 1 2 1 1 6 7777 3 3 7 0 0 3 55 888888888888888888 33 00 1 3 11 3 88 11 444 9999999 8 8 8 8 5 33 3 3 4 555555 8 0 6 9999999 8 66 33333 0 9999999999 666 77 5 66 3 5 333 000 99 6 6 33 88 5 77 000 777 5 000 5 5 0 88 2 77 77 1 4 4 1 444444444444444444444 44 0 55 55 55 222222222 555 999 44 3 3 55 3 1 77 0 2 2 888 3 3 3 7777 33 2 2 2 6666 9999 77 3 3 11111111 3 1111111111111 8888 9999999999999 4 000 4 9999999999999 1 7 55 3 1 55 666 3 55 3 3 3 3 7777 88 7 4 2222 555
lowQualScore : . . . . . .... . . . . . . .. .................. .. .. . . .. . .. .. ... ....... . . . . . .. . . . ...... . . . ....... . .. ..... . .......... ... .. . .. . . ... ... .. . . .. .. . .. ... ... . ... . . . .. . .. .. . . . . ..................... .. . .. .. .. ......... ... ... .. . . .. . . .. . . . ... . . . .... .. . . . .... .... .. . . ........ . ............. .... ............. . ... . ............. . . .. . . .. ... . .. . . . . .... .. . . .... ...
lowQualScore : 0 0 0 0 7 3333 3 3 0 0 0 2 88 888888888888888888 88 22 0 8 00 2 66 00 000 6666666 0 0 0 0 0 00 2 2 0 444444 0 8 0 4444444 0 44 44444 8 6666666666 666 99 0 99 6 0 888 333 22 7 7 77 11 7 99 000 333 7 111 7 7 4 77 1 99 00 1 0 0 5 000000000000000000000 99 7 55 55 55 111111111 888 000 22 1 1 44 1 0 11 4 9 9 222 1 1 1 0000 99 9 9 9 1111 6666 11 1 1 22222222 1 2222222222222 5555 0000000000000 0 333 0 5555555555555 7 7 00 6 7 44 444 6 00 6 6 6 6 7777 11 3 4 2222 888
consensus : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCTT---GTGCA---AT-CACCT-A-CA-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT-CCAA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
Reference ( family-221 ) : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCTT---GTGCA---AT-CACCT-A-CA-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT-CCAA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
gi|1 : AAATTACAACGGGTACAAACTATCTGCAGGCATAGGATG-ATCAGTCGGCACTAAAA-GT-ATGATCCATAT-CACACCGTGTTG---TTCAGTA---GACCTTCCAATTGGC-TTCCGGTAGAGTATATCGCATT-CAATTCAAAGCTTTCTT---GTGCT---AT--ACCTGA-CATATGGCCGTTCACAGCATCGAGGAGCCACGTACCTTAG-GAACT---G-AT-CCAAA-TT--ATTGATCCTGTTCGCGAACATTG-A-GA--AGTAATAGAAAACGGAATGCTTTT---AAACGTTCCCCGGACTAGAA--CGAAGATC--AT-TGAGAAC--ACAGATCGCTTC--GAC-TATCGTGGCGCCAA-CAC-TGTGGAA--TGCCTTATCCCCATTGGGGATTTGCGC--TGTGGCCAATATCATTGCAACA-TT--TTTTAAACAA---TCCTAAAGATC-TC-TT---------------------TCT-TTAA--GC--TTG--CTTCTT------AATATCT---AATT-CCAA--TAAG--C-A-GTCTTGAAGTTTTAGA-TGAGGATCTTATA-TACGCTATAA-C-A-----TT--T-TTTATAGTTG-ATTCAAAATCCT----TGTTAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGTCTC----------ATAT-ATT--TAGA-TGA-----GT----AGATATAAGCGCTTT--A--AGA-TTT-GATATTTGA-TTA--G-GGTC-G-CATATCATG-CA-AATTTTAGTATTA-TATAATAC--TTAATATT
gi|10 : atctgtctgcagtggccacaagctgtatttctccttgtgaggtaacaaggctaagagaggtacagattacctcatcgacgatcgatacatgcaaaatcattaataacatgctctctgtcacattcaaagactatgactaggcctaactgcattgttacttggccttttccaaaacagtgctacctaacATATCT---AATT-C-AA--CAAGA-C-A-TTCTT-AGATTTTAGG-TGAAAAT-TTATA-TA--CTA-AA-CAA--A-TTC--T-TTTATAG-CG-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------TATGCATGC----ATGT-------------ATAT-ATA--TATG-T-ATATATAN----NNNNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TAT--tctat
gi|11 : CAA--TAAGA-C-A-GTCTT-AGATTTTAGAT-GAGGGT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ATT----ATCCT----TG-TAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATA-------TATA-T-AT---TG-------NNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-N-N----NNNN-NN-NNNTTTAGTATTA-T----TATTATTATTATT
gi|12 : TCTAAGTTAATGTT-TTATA-TA--CAG-AA-A-A--A-TTT--T-T--ATAG-CGGATT----ATGAT----TG-TAT-GTGCTC-T--------T-T-------------TATGCATGT----ATGT-------------ATGT-ATA--TGTA-T-AT---TTG----ATGT-AAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-CGG-C----TATA-CATATTTTTAGTATTA-T---ATA---GTATTATTattacat
gi|13 : ccCCTAAAGA-C-TCATT---------------------T---------GC--TTG--CTT-TT------AATATCT---AATT-C-AA--CAAGA-C-A-TTCTT-AGTTTTCAGGT-GAAAAT-T---A-TA--ATA-GA-C-A--T-ACT--C-TTTGTAG-CA-ATT----ATCCT----CG-AAT-GCTCAC-T--------A-T-------------TACTTATGT----ATGT-------------ATGT-GTG--CATG-T-GTA--TGT----ATGTAatatg
gi|14 : aAGA-C-TCATT---------------------TCA-TTAA--GC--TTG--CCT-TTTTAAAAAAAATCT---AA-T-CCAA--CAAGA-CAA-ATCTT-AGTTTTTAGG-TGAAAAA-TTATA-------------------------------AG-CA-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------TA
gi|15 : agacttatttctatacgactT--T-TTTATAG-CG-ATT----AGCATA---TG-T-T-GCTCACTT--------T-T-------------TATGCATGT----ATGT-------------ATGC-GTAATTATA-TAAT---CG-----A-GT--AAGCGCTTT--AG-AGATTT---A---TTGA---A--GCGG-C-GCC----TATACCA-AATTTTAGTATTA-T----TA---TTATTATTctta
gi|16 : ---AATT-C-AA--CAAGA-C---TTCTT-A-TTTTTAGTGTGAAA-T-TTATA-TAT-CCA-GAGC-AT-A-TTC--TATTTGTAG-CA-ACT----ATCAT----TG-AAT-GCTCAC-T--------T-T-------------GACTTTTGT----ATGT-------------ATGT-GTG--TGCA--------TGT----ATGTAa
gi|17 : AAACAAACCC--TAAAGA-A-ACGTT---------------------TCT-TTAA--CC--TTG--CTT-GT------TGTACAT---AATT--AAA--CAAGA-C-A-TTCTG-AATTTTTAAG-TGATAAA-TTAAA-TA--TT------------CTT--T-TGTATA-----ACT----ATCta
gi|19 : G-TC--ATATG-GAA---ACAGA-CGCTTT--GAC-TATT-TTGCACCAA-TAC-TGTGGAA--CACCTTA---CCA-TTAGGA-TTATGTAATGT-GCCAA-ATCACTG-GACATTT--T
gi|2 : AAAATACAA--AATACAAAATACTTGCAG-CA-AGGATGCATCAGTCG-CACTAAAAAGTTATGATC-ATATTCACACCG----GCTTTTC-GTAA--GACCTTC--ATTGGCCTTCCGGTAGAGTAT--C-CATTTCAATTCAAAG--TTCTT---GTGCA---AT-CACCT-ACCA-A-GGCCGTTCACAGCATCG-CGACCTACGTACCTTAGCGAACT--TGCATGCCAAC-TTACATTCCTCC-GTCGGCGAACATTGAGCAATCAG-AA-AAAAAACAGGATGCTTTTTCAAAAAGTTCCTCGGACTAGGAACCGAAG-TC--AATTG-GAA---ACAGGACGCTCTCGGACTTATC-TTGGGCCAAGCACGTGTGG-A--TGCC-TA---CCATTTGGGA-TTGC-C--TGT-GCCAA-ATCATTG-CACATTTTCTTTTAAACAACTCCCTTAAAGA-C-TCATT---------------------TCT-TTAAGGGC--TTG--CCT-TT------TAT-TCT---AATT-CCAA--TAAGAGC-AGTTCTT-AGATTTTAGATTGAGGAT-TTATATTA--CTT-AA-C-A--A-TTT--T-TTTATAG-CG--TT----ATCCT----TG-TAT-GCTCAC-T--------T-T-------------TATGCATGT----ATAT--------------TATCAT---TATA-T-AT---TGC----ATGTAAAAGCGCTTT--AGCAGATTTT-GACT-TTGA-TTA--G-GG-C-G-C-----ATA-CA-AATTTTAGTATTA-T----TAT--TTATTATT
gi|20 : AAGCGCTTT--AA-AGATTTTTAA---TTGA-TTA--G-GG-C-G-C----TGTG-CA-AAGTTTTGTATTG-T---ATGT--TT
gi|21 : tattttaatacgAAAGCGCTT---AG-AGATTT--GA---TTGA-TTA--G-GG-C-G-C----TAT--CA-AATTT---TATTA-T---ATATTATTATTATTt
gi|22 : gtAAGCGCTTT--AG-AGATTTT-GA---TTGATTTA--G-AT-C-G-C----TATA-CA-AATTTTAGTATattata
gi|23 : CTCTTA--AAAAGTTCCTCGGACTAGAA--TGAAG-TC--ATATG-GAAGATACAGAggta
gi|3 : aAAACCACAATGTGTGCAAAATACAGG-AG-CG-AGAATA-GTCACCCA-CATTAAAAGGC-ATGACC-AC-TTCAAATCG----G---TGC--TAATCAACCTTT--AATGGT-TTCCAGTTCAGCAT--CGTAT--------AAAG--CACTTAATGTACA------CGCCT-A-TA-A-AGCAGTCTACAGAGTTG-G-ACTAACTTACTCAAGTGAAGTCATT-AC-CC--C-TT--ACT-GTTC-GCCTAGAAACGT---GTGATCAA-AA-AA-----GGGATGCTTCT---GGTCGTTCCCCGGATTCTTA--CTAAG-AC--TTATG-GAA---ACA
gi|4 : catgtgtctgctgtgtcaaattcctgtcttttttaagataagaaatagaagaagaatcagacatatcattgacgaaactacttgcaaaacgttgatacatgcttttgtaacatcaagactagactatgccaacacgttgcttgccatgaaGGTATTG-AT--CG-AT---AATTCAAAG--TTCTT---GTGCATACATGTACCT-A-CA-A-GGCCATTCACAG-ATTT-GGACCTACATA---TAT-ATACT---G-AT-TCAACCTT--AATT-TCC-GTCG-CGAACATTG--CGATCAG-AA-AA----CAGGATGCTTTTT--AAAAAT-CCTCAGACTCGAA--AGAAG-TTCAATACG-GAA---ACAGAA-GCTTT--GA---ATT-TTGC---AA-TAC-TGTGGAA--CGC-TTA---CAACT-AGGA-TTACGT--TGT-GCCAA-ATCACTA-GAAA--C--TTTTAAACAAA--CCCTAAACA-C-GCTTT---------------------TCT-GTAA--TC--TTG--CTT-TT------AATATTTTTAAATT-CC-A--CAAGA-C-T-TTCTT--GGTTTTA-GCTAAAAAT-TTATA-TA--ttcagcgcctatacta
gi|5 : TAAAAAGT-ACGATC-ATATT-ACACCG----G---TACTGAAA--GACCTTC--ATTGAA-TTCTGGTAAAGTAT--TGCATT-CAATTCAAAG--TTCTT---ATGCA------TACCT-A-CA-A-GGCTGTTCACAGCTTC--AGACCTA--TATCTTAGAGAAC---TG-AT-CCAATGTT--A-TTCTCC-ATC-ACGAACATT--GTGATCAG------AAAACAGGATGC-TTTT--AAAAATTCCTTGGGCTAGAA--GGAAG-TC--ATTTG-GAA---ACAG-ACGCTTT--GAC-TATT-TCGCGCCAA-TAC-CGTGGAA--CGCCTTA---CCA-TTAGGA-TTATGT--TGT-GCCAA-ATCACTA-GACAATT--T
gi|6 : TTTAAACAAACCGCTAAGAGA-CGTAATT---------------------TCTCTTAA--GCCCTTGAGCTT-T-------AATATCT---AGTTGCCAAAGCAAAA-C-A-TTCTT-CAGTTTTAGG-TGAACAT-TT-TA-TA--TTA-GA-C-ATGA-TTTCGT-TTTGTAG-CA-ACT----A-CA-----TG-AAT-GCCCAC-T--------TGTCG-----------TATG-ATGTAGTAATGTAATAGCAGATATAATAT-ATG--TGTACT-ATA--TGTTTTAATGTAAAAGCGCTTTTCCG-AGATTCT-TG---TTGA-TTAGCG-GG-C-G-C----TATA-CACAATTT
gi|7 : TAAACAAACCC--TAGAGA-C-GTATT---------------------TCT-T-AA--GT--TTG--CTT-TT------AATATCT---A--T-CCAA--CAAAA-C-A--TCTT-AGTTTTTAGG-TGAACAT-TTATA-TA--TTA-GA-C-AT-A-TTC--T-TTTGTAG-CA-ACT----ATCA-----TG-AAT-GCCCAC-TGTGTACTAT-TGTGTGATGTAATGTATACAGAT----ATAT-------------ATAT-ATG--TATA-T-AT---TATGTTAATGT-AAAGCGCTTT--CG-AGA-TTT-GATG-TTGA-TTA--G-GG-C-G-C----TAT--CA-AA-TTTATTGTCACC---GTAT--TTA
gi|8 : CGCCAA-AGT-TGTAAAAGATGCCTTA---CCATT-AGGA-TTACG----GT-GCCAA-ATCATTG-CACATTT--TT--AAACAA--CTCCTAAAGA-C-TCATTGGTACCGTATATGATTTATATTCT-TTAA--GC--TTG--CTT---------AATATCT---AATT-C-AA--TAAGA-C-A-GTCTT-AGATTTTAG-TTGAAAAT-TTATA-TA--GTA-AA-C-A--AATTC--T-TTTATAG-CG-ACT----ATCAT----TG--ATAGCTCAC-T--------T-T-------------TAgata
gi|9 : ttTTTT--AAAGGTTCCTCGGACCAGAA--CGAAG-TC--ATATG-AAT---ATAGAA-G-TTT--GAC-TA---TTG--------AC-TGTGGAA--CGCCTTA---AAA-ATAGGT-TTATGT--TGT-G-CA---------------TT--TTTAAAACAAA--CCCTAAAGA-G-TCGTT---------------------TC-------------------T-TT------AATATTT---AATT--CAA--CTAGA-C-A-TTCTT-AGT-------------AT-T----------TA-AA-C-AT-A-TTC--T-TTTGTAG-CA-ACT----ATCATTGAATG-CAT-GCTCAC-T--------T-T-------------TA
blockSeqs : A T A T C CA C . A T . A TC GCTTTTCGTAA . CC G T . C TT . AAT TACATGT . C . . C G G C C TCATT G C ACATTCC . GG TGAGC AAAAAAAA TCA AC . CA A . GAT GAC CG T . CA GC G GA . TTT . TAA . . G T TC AC C . G A GGTACCGTATATGATTTATAT TC GG CC AG TTTTAAAA TTA GCC AG G A GT . A AT . T TC . G A TGA CG A . G . TGAA A A T GTGTACTA G GTGTGATGTAATG AGTA AATAGCAGATATA C AAT C ATATGTTTTA N N TC C N TT CT T GC C . G C . AC T C A TTA
blockSeqs : C . T A . CG . . G . . A TC GTGCTAATC . T C C . T T . . ATC . . . . A G T C T TTGC . G ACTG . TA TGC AAAA A . . . T . . AC . . . GG T . . . TT . C . . C T . CT C . . A . A . . . TT . CC . . . T . A GT . . C . . . TA . . . . . A T . . . . CG . . . A . ATTATGTTA T N . . N N TG . . . . . . . N C . A TTA
blockSeqs : A . . . T GTACTGAAA . A T T . C . . . C . . . . C T A T A TG . . AATT . G TGT AAAA T . . . A . . AA . . . CG T . . . CT . T . . G A . AC C . . G . T . . . GT . CC . . . G . T GT . . C . . . TA . . . . . . T . . . . . . . . A . ATATATAN T A . . T N . . . . . . . . N . . A T
blockSeqs : A . . . . . . T . . . . . . . . . TG . . ATTC . A GT AAAA T . . . A . . AC . . . CG T . . . TT . T . . G T . AC C . . A . T . . . TT . CC . . . T . T TG . . C . . . AA . . . . . . A . . . . . . . . G . GTATGT T A . . T T . . . . . . . . A . . G T
blockSeqs : T . . . A . . AA . . . C A . . . TT . T . . C . . A C . . T . T . . . TT . CC . . . A . T AT . . A . . . TA . . . . . . A . . . . . . . . G . ATTTG T A . . T T . . . . . . . . A . . . T
blockSeqs : . . . . T . . . . . . . AT . . . . . . . A C . . A . T . . . TT . C . . . T . T GC . . T . . . A . . . . . . T . . . . . . . . G . AATCG T A . . T T . . . . . . . . G . . . T
blockSeqs : . . A . . . . . . A . T . . . TT . C . . . T . A G . . C . . . A . . . . . . A . . . . . . . . G . ATTGC T . . . T T . . . . . . . . A . . . .
blockSeqs : . . . A . . . . . T . C . . . T . G G . . T . . . A . . . . . . T . . . . . . . . . . ATTG . . . . T T . . . . . . . . A . . . .
blockSeqs : . . G . . . . . . . A . . . T . G G . . T . . . T . . . . . . A . . . . . . . . . . TGT . . . . T . . . . . . . . . . .
blockSeqs : . C . . . G . T G . . G . . . A . . . . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . T . A G . . . . . . . . . . . . . C . . . . .
blockSeqs : . . . . . T T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** T* ** C****** G* ANTN*** AAAA****** T** *** AN* *** TT* G* AC TT******* C** C** A*** **** N* ************* ATTTG******** *** **** ****
originalCons : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCTT---GTGCA---AT-CACCT-A-CA-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TT--ATTTNTCC-GTCGGCGAACATTG-GCGATCAG-AA-AAAAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAACGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATTTAGGA-TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT-CCAA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--A-TTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-T-AT---TGT----ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T---ATAT--TTATTATT
finalCons : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCTT---GTGCAC------ACCT-A-CA-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TTANTN---TCC-GTCGGCGAACATTG-GCGATCAGAAAA------CGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACAGAN-GCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCATT-AGGA-TTACGT--TGT-GCCAA-ATCACTGG-ACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTTTT-------AATATCT---AATTC--AA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TAC--TA-AA-C-AA---TTT--T-TTTATAG-CG-ACT----ATCAT----TGN-AT-GCTCAC-T--------T-T-------------TATGCATGT----ATGT-------------ATAT-ATG--TATA-TATTTG--------ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-G-C----TATA-CA-AATTTTAGTATTA-T----TAT--TTATTATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCTCCGCCAAATTCGTAGAACATCGGTTTACACAGATTAGACTTGTGGTCCAAATAATTGGTGAAATTTAATAATTCAAAAACTAATGATACATATATGTTTTATA
Alignments
lowQualScore : 1 1111 1 1 1 1 333333333333333333 11 11 11 11 11 111 11 222222 11 2 33333 1 1111111 11 33333 1111 111 111 111 111 1 11 333333333333333333333 111111111 11 2 11111 11111111 2222222222222 2222222222222 111 2222222222 111 1111 2222 11
lowQualScore : 1 2 1 88 7777 3 3 7 0 0 3 55 888888888888888888 33 00 1 3 11 3 88 11 444 8 11 333333 8 8 8 8 5 66 3 3 4 44444 8 0 6 8888888 8 66 0 55555 7777 666 77 5 66 3 5 333 5 66 99 6 6 33 88 5 77 000 5 77 000 5 5 0 88 2 77 77 1 4 4 1 444444444444444444444 44 0 55 55 55 222222222 555 00 44 3 3 55 3 1 1 0 0 2 2 888 3 3 44444 33 2 2 2 6666 9999 77 3 11111111 3 1111111111111 3 6666 8888 9999999999999 99 222 4 4 5555555555 1 4 0 9 55 3 1 55 666 3 55 3 3 3 1111 4 3 7 4 0000 66
lowQualScore : . . . .. .... . . . . . . .. .................. .. .. . . .. . .. .. ... . .. ...... . . . . . .. . . . ..... . . . ....... . .. . ..... .... ... .. . .. . . ... . .. .. . . .. .. . .. ... . .. ... . . . .. . .. .. . . . . ..................... .. . .. .. .. ......... ... .. .. . . .. . . . . . . . ... . . ..... .. . . . .... .... .. . ........ . ............. . .... .... ............. .. ... . . .......... . . . . .. . . .. ... . .. . . . .... . . . . .... ..
lowQualScore : 0 0 0 33 3333 3 3 0 0 0 2 88 888888888888888888 88 22 0 8 00 2 66 00 000 0 00 000000 0 0 0 0 0 22 2 2 0 44444 0 8 0 0000000 0 44 8 00000 0000 666 99 0 99 6 0 888 0 77 22 7 7 77 11 7 99 000 7 99 111 7 7 4 77 1 99 00 1 0 0 5 000000000000000000000 99 7 55 55 55 111111111 888 44 22 1 1 44 1 0 2 0 4 9 9 222 1 1 88888 99 9 9 9 1111 6666 11 1 22222222 1 2222222222222 1 5555 5555 0000000000000 55 888 0 0 5555555555 1 4 2 6 00 6 7 44 444 6 00 6 6 6 4444 5 6 3 0 0000 77
consensus : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCT---TGTGC-A--TAC------CT-AC-A-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TTA---TTN-TCC-GTCGGCGAACATTGA---GCGATCAG----AAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACA-GA-CGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCA-TTAGGA--TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT--CAA--CAAGA-C-A-TTCTT-AGNTTTTAGG-TGAAAAT-TTATA-TA--CTA-AA-C-A--ATTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCACT--------T-T-------------T-A----TGCATGT----ATGT-------------ATAT--ATG--TATA-T-A-----T----TTG-ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-GC----TATAC-A-AATTTTAGTAT-TAT----TAT--TTATTATT
Reference ( family-221 ) : AAANTACAACGNGTACAAAATACNTGCAG-CG-AGGATG-ATCAGTCG-CACTAAAAAGT-ATGATC-ATATTCACACCG----G---TNC-GTAA--GACCTTC--ATTGGC-TTCCGGTANAGTAT--CGCATT-CAATTCAAAG--TTCT---TGTGC-A--CAC------CT-AC-A-A-GGCCGTTCACAGCATCG-GGACCTACGTACCTTAG-GAACT--TG-AT-CCAAC-TTA---NTN-TCC-GTCGGCGAACATTG----GCGATCAG----AAAACGGGATGCTTTTT--AAAAGTTCCTCGGACTAGAA--CGAAG-TC--ATATG-GAA---ACA-GA-NGCTTT--GAC-TATT-TTGCGCCAA-TAC-TGTGGAA--CGCCTTA---CCA-TTAGGA--TTACGT--TGT-GCCAA-ATCACTG-GACATTT--TTTTAAACAAACCCCCTAAAGA-C-TCATT---------------------TCT-TTAA--GC--TTG--CTT-TT------AATATCT---AATT--CAA--CAAGA-C-A-TTCTT-AGNTTTTAGGTTGAAAAT-TTATA-TA--CTA-AA-C-A--ATTT--T-TTTATAG-CG-ACT----ATCAT----TG-NAT-GCTCACT--------T-T-------------T-A----TGCATGT----ATGT-------------ATAT--ATG--TATA-T-A-----T----TTG-ATGTAAAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-C-GC----TATAC-A-AATTTTAGTAT-TAT----TAT--TTATTATT
gi|1 : AAATTACAACGGGTACAAACTATCTGCAGGCATAGGATG-ATCAGTCGGCACTAAAA-GT-ATGATCCATAT-CACACCGTGTTG---TTCAGTA---GACCTTCCAATTGGC-TTCCGGTAGAGTATATCGCATT-CAATTCAAAGCTTTCT---TGTGCTA--TAC------CTGAC-ATATGGCCGTTCACAGCATCGAGGAGCCACGTACCTTAG-GAACT---G-AT-CCAAA-TTA---TTGATCCTGTTCGCGAACATTGAGAAGTAAT-AG----AAAACGGAATGCTTTT---AAACGTTCCCCGGACTAGAA--CGAAGATC--AT-TGAGAAC--ACA-GATCGCTTC--GAC-TATCGTGGCGCCAA-CAC-TGTGGAA--TGCCTTATCCCCA-TTGGGGATTTGCGC--TGTGGCCAATATCATTGCAACA-TT--TTTTAAACAA---TCCTAAAGATC-TC-TT---------------------TCT-TTAA--GC--TTG--CTTCTT------AATATCT---AATTC-CAA--TAAG--C-A-GTCTTGAAGTTTTAGA-TGAGGATCTTATA-TACGCTATAA-C-A----TT--T-TTTATAGTTG-ATTCAAAATCCT----TGTTAT-GCTCACT--------T-T-------------T-A----TGCATGT----ATGTCTC----------ATAT--ATT--TAGA-TGA-----G----TAG-ATAT--AAGCGCTTT--A--AGA-TTT-GATATTTGA-TTA--G-GGTC-GCATATCATGC-A-AATTTTAGTAT-TATATAATAC--TTAATATT
gi|10 : atctgtctgcagtggccacaagctgtatttctccttgtgaggtaacaaggctaagagaggtacagattacctcatcgacgatcgatacatgcaaaatcattaataacatgctctctgtcacattcaaagactatgactaggcctaactgcattgttacttggccttttccaaaacagtgctacctaacATATCT---AATT--CAA--CAAGA-C-A-TTCTT-AGATTTTAGG-TGAAAAT-TTATA-TA--CTA-AA-CAA--ATTC--T-TTTATAG-CG-ACT----ATCAT----TG-AAT-GCTCACT--------T-T-------------T-A----TGCATGC----ATGT-------------ATAT--ATA--TATG-T-A-----TATA-TAN-NNNNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-NN----NNNNN-N-NNNTTTAGTAT-TAT----TAT--tctat
gi|11 : --CAA--TAAGA-C-A-GTCTT-AGATTTTAGAT-GAGGGT-TTATA-TA--CTA-AA-C-A--ATTT--T-TTTATAG-CG-ATT----ATCCT----TG-TAT-GCTCACT--------T-T-------------T-A----TGCATGT----ATGT-------------ATAT--AT----------A-----TA---TTG---NNNNNNNNNNNNN--NN-NNNNNNN-NN---NNNN-NNN--N-NN-N-NN----NNNNN-N-NNNTTTAGTAT-TAT----TATTATTATTATT
gi|12 : TCTAAGTTAATGTT-TTATA-TA--CAG-AA-A-A--ATTT--T-T--ATAG-CGGATT----ATGAT----TG-TAT-GTGCTCT--------T-T-------------T-A----TGCATGT----ATGT-------------ATGT--ATA--TGTA-T-A-----T----TTG-ATGT-AAAGCGCTTT--AG-AGATTTT-GA---TTGA-TTA--G-GG-CGGC----TATAC-ATATTTTTAGTAT-TA-----TATA-GTATTATTattacat
gi|13 : ccCCTAAAGA-C-TCATT---------------------T---------GC--TTG--CTT-TT------AATATCT---AATT--CAA--CAAGA-C-A-TTCTT-AGTTTTCAGG-TGAAAAT----TA-TA--ATA-GA-C-A--TACT--C-TTTGTAG-CA-ATT----ATCCT----CG-AAT-GCTCACT--------A-T-------------T-A----CTTATGT----ATGT-------------ATGT--GTG--CATG-T-G-----T----ATGTATGTAatatg
gi|14 : aAGA-C-TCATT---------------------TCA-TTAA--GC--TTG--CCT-TTTTAAAAAAAATCT---AATC--CAA--CAAGA-CAA-ATCTT-AGTTTTTAGG-TGAAAAA-TTATA------------------------------AG-CA-ACT----ATCAT----TG-AAT-GCTCACT--------T-T-------------T-A----
gi|15 : agacttatttctatacgactT--T-TTTATAG-CG-ATT----AGCATA---TG-T-T-GCTCACT--------T-T-------------TTA----TGCATGT----ATGT-------------ATGC--GTAATTATA-T-A-----A----TCG-A-GTAA--GCGCTTT--AG-AGATTT---A---TTGA---A--GCGG-C-GCC---TATACCA-AATTTTAGTAT-TAT----TA---TTATTATTctta
gi|16 : ---AATT--CAA--CAAGA-C---TTCTT-A-TTTTTAGTGTGAAA-T-TTATA-TAT-CCA-GAGC-AT-ATTC--TATTTGTAG-CA-ACT----ATCAT----TG-AAT-GCTCACT--------T-T-------------G-ACTTTTGTATGT----ATGT-------------GTGTGCATG--TATG-T-A-----T----a
gi|17 : AAACAAACCC--TAAAGA-A-ACGTT---------------------TCT-TTAA--CC--TTG--CTT-GT------TGTACAT---AATT--AAA--CAAGA-C-A-TTCTG-AATTTTTAAG-TGATAAA-TTAAA-TA--TT-----------CTT--T-TGTATA-----ACT----ATCa
gi|19 : G-TC--ATATG-GAA---ACA-GA-CGCTTT--GAC-TATT-TTGCACCAA-TAC-TGTGGAA--CACCTTA---CCA-TTAGGA--TTATGTAATGT-GCCAA-ATCACTG-GACATTT--T
gi|2 : AAAATACAA--AATACAAAATACTTGCAG-CA-AGGATGCATCAGTCG-CACTAAAAAGTTATGATC-ATATTCACACCG----GCTTTTC-GTAA--GACCTTC--ATTGGCCTTCCGGTAGAGTAT--C-CATTTCAATTCAAAG--TTCT---TGTGC-AATCAC------CT-ACCA-A-GGCCGTTCACAGCATCG-CGACCTACGTACCTTAGCGAACT--TGCATGCCAAC-TTACATTCC-TCC-GTCGGCGAACATTGA---GCAATCAGAAAAAAAACAGGATGCTTTTTCAAAAAGTTCCTCGGACTAGGAACCGAAG-TC--AATTG-GAA---ACAGGA-CGCTCTCGGACTTATC-TTGGGCCAAGCACGTGTGG-A--TGCC-TA---CCATTTGGGA--TTGC-C--TGT-GCCAA-ATCATTG-CACATTTTCTTTTAAACAACTCCCTTAAAGA-C-TCATT---------------------TCT-TTAAGGGC--TTG--CCT-TT------TAT-TCT---AATTC-CAA--TAAGAGC-AGTTCTT-AGATTTTAGATTGAGGAT-TTATATTA--CTT-AA-C-A--ATTT--T-TTTATAG-CG--TT----ATCCT----TG-TAT-GCTCACT--------T-T-------------T-A----TGCATGT----ATAT--------------TATC-AT---TATA-T-A-----T----TGC-ATGTAAAAGCGCTTT--AGCAGATTTT-GACT-TTGA-TTA--G-GG-C-GC-----ATAC-A-AATTTTAGTAT-TAT----TAT--TTATTATT
gi|20 : AAGCGCTTT--AA-AGATTTTTAA---TTGA-TTA--G-GG-C-GC----TGTGC-A-AAGTTTTGTAT-TGTA---TGT--TT
gi|21 : tattttaatacgAAAGCGCTT---AG-AGATTT--GA---TTGA-TTA--G-GG-C-GC----TAT-C-A-AATTTTATTATATAT----TATTATTATTATTt
gi|22 : gtAAGCGCTTT--AG-AGATTTT-GA---TTGATTTA--G-AT-C-GC----TATAC-A-AATTTTAGTAT-ata
gi|23 : CTCTTA--AAAAGTTCCTCGGACTAGAA--TGAAG-TC--ATATG-GAAGATACA-GA-ggta
gi|3 : aAAACCACAATGTGTGCAAAATACA-GGAG-CG-AGAATA-GTCACCCA-CATTAAAAGGC-ATGACC-AC-TTCAAATCG----G---TGC--TAATCAACCTTT--AATGGT-TTCCAGTTCAGCAT--CGTAT--------AAAG--CACTTAATGTAC-A--CGC------CT-AT-A-A-AGCAGTCTACAGAGTT--GGACTAACTTACTCAAGTGAAGTCATT-AC-CC--C-TTA---CTG-TTC-GCCTAGAAACGT------GTGATCAA----AAAA-GGGATGC-TTCT--GGTCGTTCCCCGGATTCTTA--CTAAG-AC--TTATG-GAA---ACA-
gi|4 : catgtgtctgctgtgtcaaattcctgtcttttttaagataagaaatagaagaagaatcagacatatcattgacgaaactacttgcaaaacgttgatacatgcttttgtaacatcaagactagactatgccaacacgttgcttgccatgaaGGTATTG-AT--CG-AT---AATTCAAAG--TTCT---TGTGC-A--TACATGTACCT-AC-A-A-GGCCATTCACAG-ATTT-GGACCTACATA---TAT-ATACT---G-AT-TCAACCTTA---ATT-TCC-GTCG-CGAACATTG-----CGATCAG----AAAACAGGATGCTTTTT--AAAAAT-CCTCAGACTCGAA--AGAAG-TTCAATACG-GAA---ACA-GA-AGCTTT--GA---ATT-TTGC---AA-TAC-TGTGGAA--CGC-TTA---CAA-CTAGGA--TTACGT--TGT-GCCAA-ATCACTA-GAAA--C--TTTTAAACAAA--CCCTAAACA-C-GCTTT---------------------TCT-GTAA--TC--TTG--CTT-TT------AATATTTTTAAATT--CCA--CAAGA-C-T-TTCTT--GGTTTTA-GCTAAAAAT-TTATA-TA--ttcagcgcctatacta
gi|5 : TAAAAAGT-ACGATC-ATATT-ACACCG----G---TACTGAAA--GACCTTC--ATTGAA-TTCTGGTAAAGTAT--TGCATT-CAATTCAAAG--TTCT---TATGC-A--TAC------CT-AC-A-A-GGCTGTTCACAGCTTCA-G-ACCTA--TATCTTAGAGAACT---G-AT-CCAATGTTA---TTC-TCC-ATCA-CGAACATTG-----TGATCAG----AAAACAGGATGCTTTT---AAAAATTCCTTGGGCTAGAA--GGAAG-TC--ATTTG-GAA---ACA-GA-CGCTTT--GAC-TATT-TCGCGCCAA-TAC-CGTGGAA--CGCCTTA---CCA-TTAGGA--TTATGT--TGT-GCCAA-ATCACTA-GACAATT--T
gi|6 : TTTAAACAAACCGCTAAGAGA-CGTAATT---------------------TCTCTTAA--GCCCTTGAGCTT-T-------AATATCT---AGTTGCCAAAGCAAAA-C-A-TTCTT-CAGTTTTAGG-TGAACAT-TT-TA-TA--TTA-GA-C-ATGATTTCGT-TTTGTAG-CA-ACT----A-CA-----TG-AAT-GCCCACT--------TGTCG-----------T-A----TG-ATGTAGTAATGTAATAGCAGATATAATAT--ATG--TGTACT-ATATGTT----TTA-ATGTAAAAGCGCTTTTCCG-AGATTCT-TG---TTGA-TTAGCG-GG-C-GC----TATAC-ACAATTT
gi|7 : TAAACAAACCC--TAGAGA-C-GTATT---------------------TCT-T-AA--GT--TTG--CTT-TT------AATATCT----ATC--CAA--CAAAA-C-A--TCTT-AGTTTTTAGG-TGAACAT-TTATA-TA--TTA-GA-C-AT-ATTC--T-TTTGTAG-CA-ACT----ATCA-----TG-AAT-GCCCACTGTGTACTAT-TGTGTGATGTAATGT-A----TACAGAT----ATAT-------------ATAT--ATG--TATA-T-A-----TTATGTTA-ATGT-AAAGCGCTTT--CG-AGA-TTT-GATG-TTGA-TTA--G-GG-C-GC----TAT-C-A-AA-TTTATTGT-CACCG--TAT--TTA
gi|8 : CGCCAA-AGT-TGTAAAAGATGCCTTA---CCA-TTAGGA--TTACG----GT-GCCAA-ATCATTG-CACATTT--TT--AAACAA--CTCCTAAAGA-C-TCATTGGTACCGTATATGATTTATATTCT-TTAA--GC--TTG--CTT---------AATATCT---AATT--CAA--TAAGA-C-A-GTCTT-AGATTTTA-GTTGAAAAT-TTATA-TA--GTA-AA-CAA--ATTC--T-TTTATAG-CG-ACT----ATCAT----TG--ATAGCTCACT--------T-T-------------T-A----gata
gi|9 : ttTTTT--AAAGGTTCCTCGGACCAGAA--CGAAG-TC--ATATG-AAT---ATA-GA-AG-TTT--GAC-TA---TTG--------AC-TGTGGAA--CGCCTTA---AAA-ATAGGT--TTATGT--TGT-G-CA---------------TT--TTTAAAACAAA--CCCTAAAGA-G-TCGTT---------------------TC-------------------T-TT------AATATTT---AATT--CAA--CTAGA-C-A-TTCTT-AGT-------------AT-T----------TA-AA-C-AT-ATTC--T-TTTGTAG-CA-ACT----ATCATTGAATG-CAT-GCTCACT--------T-T-------------T-A----
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCTCCGCCAAATTCGTAGAACATCGGTTTACACAGATTAGACTTGTGGTCCAAATAATTGGTGAAATTTAATAATTCAAAAACTAATGATACATATATGTTTTATA