lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222
lowQualScore : 1111 11111 666666 22 1 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 22222 1111 1111 1 2222 6666666666666666666666666666666666 11111 22222222 1111111111 11 7777777777777777777777 111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 444 7777777777 1111111 999999 1 2222 11 1 4444444 2 1 3333333 2 1 1 1 1 1 11 2 1 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 1 333333 2 1 1 11 11 2 11 3333333 22222 777777777 44444444 44 333333 33 22 2 2 5555555555555555 1 222 33333333333333333333333333333333333333333333333333333333333333333 2 1 2 22 2 666666666 2 33 44 2 2 22 333333333 22 2 333 1 2 2 2 55 8888888888888888888888888888888888888888888888888 2 2 33 1 3333 4 11 1 1 666666666666666666666 1
lowQualScore : 7777 3 3 99999 4 222222 00 1 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 8 4444 999 33333 2222 0000 0 2222 4444444444444444444444444444444444 44444 55 33333333 5555555555 0 55 8 2222222222222222222222 000 9999 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 6 0 88 111 11 6666666666 0 7 9999999 555555 6 3 0 7777 44 2 3333333 6 6 3 1111111 8 3 3 6 3 7 3 6 0 3 44 6 7 3 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 2 77 3 888888 9 6 3 5 7 44 44 6 33 6666666 55555 666666666 33333333 77 999999 6 11 44 0 7 6666666666666666 5 666 00000000000000000000000000000000000000000000000000000000000000000 0 6 0 77 3 6 777777777 0 44 77 0 0 77 222222222 77 0 000 5 7 0 0 55 9999999999999999999999999999999999999999999999999 55 0 0 6 6 88 5 6666 88 88 0 22 5 5 999999999999999999999 6 5
lowQualScore : .... . . ..... . ...... .. . . ............................................................................................................................................................ . . .... ... ..... .... .... . .... .................................. ..... .. ........ .......... . .. . ...................... ... .... ...................................................................................................................................................................................................................................................................................... . . . .. ... .. .......... . . ....... ...... . . . .... .. . ....... . . . ....... . . . . . . . . . . .. . . . . ...................................................................................................................................................................................................................................... . . .. . ...... . . . . . .. .. . .. ....... ..... ......... ........ .. ...... . .. .. . . ................ . ... ................................................................. . . . .. . . ......... . .. .. . . .. ......... .. . ... . . . . .. ................................................. .. . . . . .. . .... .. .. . .. . . ..................... . .
lowQualScore : 0000 0 8 00000 8 222222 44 8 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 8 2222 222 66666 4444 6666 0 5555 0000000000000000000000000000000000 00000 55 00000000 8888888888 5 55 3 5555555555555555555555 000 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 7 33 777 33 3333333333 7 0 3333333 000000 0 3 7 0000 33 0 3333333 0 7 3 0000000 7 3 3 7 3 3 3 7 7 3 77 7 3 3 7 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 55 3 333333 0 0 3 0 0 33 00 7 77 7777777 00000 000000000 00000000 55 000000 0 00 00 0 5 5555555555555555 0 555 00000000000000000000000000000000000000000000000000000000000000000 0 0 0 55 0 0 000000000 0 55 55 0 0 55 000000000 55 0 000 0 5 0 0 00 5555555555555555555555555555555555555555555555555 55 0 0 0 0 00 0 0000 00 00 0 00 5 0 000000000000000000000 0 0
consensus : NNNTACCAAATAG----GGAATA--GT-GAGGTCAA-----GGTCACAGGGAAGGTCAAGGTCAAAT----------------AAATG--GCC-------A-----A--------------------------TA--------TG------TATCA--GC---GT---AA-GNATT------TTNA----TATAAATATT-TC---AT-----CGATTG---CTTTGAAACTGAGCT----AAACACCAAAT---NCGGGAA-A--GTGAGGTCA----AGGTCA-AAGGAAATGTCAAGGTCA-AAA-TATTGATG---CAGT-TGGNATAGATGTCACC-----AA--TATG-------TATCAGC-G-CGT-A-AAGTTTGATAAAA-ATATNTT---NA--A-A-G----GT---TTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC-GG--A----CAGA------------C-------GGA-----G-----GA-A--GA--G-----A--AG-G--ATGG-AA-GACAG-AC-ATAG--C-AA--ACAC-ACTATAT-----GCCCCG-GCCATA---TT--CATGGC-GAGGCGT---GAAAATAA-C---CACTTTTTT-ATTC-C-----------AT--GTAACAT----A---------TT-----CGN-------A---T-AAG-------TAAA-AGATGCGCGCCATTATTC--TATAATACCC-AATAAAT---GNC-TA-TCTACTTTCATTTGTTCT-AT--TTTGGTTCANC--TATTGTGACG-AATA-G--AG-CGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACAC-TC-ATCA-GCGGACGG-CCTTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTGT-GATATATCTTTC-AG-AGAN---TGT-ATCA-C-GGAG----GTGC-AGAGGGTTNATCACCCT-------CAGG---AGAACAAA-CATA-ACAT--CGGGCATGGANTTTTAAANNTC--A--ATTTTT-CGATCAT---ACAA----TTTTG---NCG-GTT--CGGCTGTCAA-TNCC-CTTA--ATAGGGCCGA-TA-GCTG-CT-CTNGCGGNA-TGGGANGNCGCCAGTGCCCATATTNTCCNCGGGCTCAGTACG-TTTTAT------CAGCCGCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGGCCCAAA---C---GGAGNCCCTTCTGTTATCCATCCAGGAATTGCTGTTTGTTTTAATTTGNTTTCAAAACAGCGCGCGTCACAATTGTNTCATTAGATTTTCCCCATCTCTCCCCTTGAATGCATANTACTTGGAGTACTGTCTAACGATANTCGTAAATACACACCCGGTGACTCACTACATGGTCGGGACAAATAAGCAAATAAGCAATATTGTAGGCAGGGGGATCTCCTTCAAACCCGTTCCTTCTACCGTNTGCGCTGCATCTCAGTAATTGGATGGACNTTTCCGTTTACAATTGACGTTCCATTACCCAGTGGGACCGACCAAAACATGAAGNCAAAACAGATGGGTGGAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTTTTCCATCTTTTCCACNCCATACCTGCTATGNCATC-----CCTTCCTTAATTTTTNNACAACCCACTGGGGAATGCCTTCCAGTGTGAACGCCAAACCTNGAAANNANNAAAACCAAATTAATGAATCTGTCCAGGATAGGAGAGTCAAATTGGCCAATTCGACAA
Reference ( gi|1 ) : AACTACCAAATAG----GAAATA--GG-GAGATCAATTG--GGTCAACGGGAAGGTCATGGTAAAA-----------------AAAT-------------A-----A--------------------------TA--------TG------TATCA--GT---GT---AA-GCATT------TTCA----TACAAATATTGTC---AT-----TGGTTG---CTTTGAAAGTGAGCT----AAACACCGAAT---TTGGGAA-A--GTGAGGTCA----AGGTCA-AAGGAAATGCTAAGGTCA-AAACTATTGATG---CAGT-TGGGATAGATGTTACC-----AA--TATC-------TATCAGC-A-CGT-G-GAGTTTGATAAAG-ATATATT---GA--A-A-G----GT---TTCTTTGAAACTGAGCTA---AACAC-AGCGTGT-------------G-AC-GG--A----TAGA------------C-------GGA-----G-----GA-A--GA--G-----A--AG-G--ATGG-AA-GACAG-AC-ATAG--C-AA--ACACTACTATAT-----ACTCCG-GCCATA---CT--CATGGC-GAGGAAT---GAAAATGACCTTACACTTTTTT-ATTT-C-----------A---GTGACAT----A---------CT-----CGC-------A---T-AAG-------TAGA--GATGCACACCATTGTCC--TATAATAC---AGCAAAT---TACCTT-TCCAATTTCATTTGTTCT-AT--TTTGGTT------TATTATGACG-AGTA-G--AG-TGTCACGTTCATTTTAC--TTTTTACAA-CGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTC-ATCA-GCGGACGG-CCTTTTCCGA-GGGTCGTG-GTTCTTGCAT-CGTTTGT-GA-ATATCTTTC-AGCAGAG---GGC-AGCG-C-GGAGGCATGTGCAAGAAGGGGGAGCACTCTTA-----CAGGTAAAGAACAAA-CATA-ACATTTCAG-TATGGGTTCTCAAAGGTC--A--ATTTTTGTGAGCAT--GACAA-G--TTTTG---GCA-GCTGACGGCTGGCAA-TGCC-CTCA--AGAGGGCCTATTA-GCTG-CTTCTTGTCGTACTAGAATATCACCA-TG--TA-ATTCTCCCCAA--TCAGTACA-TTTTAT------CAGCTGCTTGTTTGTTCCATTCAACAAAATGGTTTCTATAGAATCCAAATC-GCTG-AGCACCAAA---C---GGAAGTC-TTCTGTT----A----GGAATTGCTG-T-G-TT-AATTTG--TTCAAAAAAAGATGCGTCGCAATTGTA-CAT-AGATTTTCCCAATCTCTCCC--TGAATGC-TAGTACTTTGAGTA-TGTCTA--------CGTAATTATACACA-GGTG---CAT--TCTGGTC-G-ACAA------AG--------TATTGTAGGC-GGGGTAT-TCTTTCAA--CCGTTCTTTTTAC-GTCT-CG-TGCATC-CAGTAAACGGATGAAC--TTCCG-TTACAAT-GACGT--CATTA-C-AGT-G-ACCGACC--AAC-TGAAGC--AAACCGATGGTTGGAA-GAAGTTCTTCA-TGAGATCTATTCCCCGCTAAAGTAG----------CA--------ATA--ATGGGTGACAAGTCATTTTTCACATTCCTTAATTTTTTGACAA-CCAC-GGGAAATGTCTTCCAGTGTGAGAGCAAAACCTGTAAAAAAAAAAAACC-AACCAATGAATGTGTT--GAAT---CGAGCCCTATATGTCAATTCTACAA
gi|7 : TACCAAATAGCTAGGGAACA--GT-GAGATCAA-----GGTCACAGGGAAGGTCAAGGTCAAA-----------------AAATAAGGTCACAGTTGA-----A--------------------------TAGCTACCACTA------TATCA--GT---GT---AC-GAGTT------TTCA----TG-AAAT
gi|6 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgtgaaATCAAATAT----AGAATA--GT-GAACTCA-TTGAAGGTCAAAGGAAATGTCTTGGTCAAATATTGATGCAGTTGAATAGATGTCACC-------A-----A--------------------------TA--------TG------TATCA--GC---ATACAAA-GTA---------TGA----TATAAATATCTTCTGGAT-----CAATAGAGTCTTTAAAACTGAGCT----AAA
gi|5 : cCCAAATAG----GGAATATAGT-GAGGTCAA-----GATCACAGGGAAGGTCAAGGTCAGA-----------------AAAT-------------AAATCCA--------------------------TAGT------TGAGTAGCTATAT--AT---GT---AA-CCACTAATATGTCCAAGTGTA-AAAGATT-TC---ATAAAAAT-ATTG---CTTTCAAACCGAGCTTGACAAAAA---AAT---ATGGAAA-A--GTGCAGTCA----AGGTCA-AAAGAAAT-----GGACA-----TAT---TG---TAAT---GAACAT-TGT---------AA--T-TC--------ATCAGG-ACCCT-G-GAATTTGCTACAG-ATGTATT---AA--C-A-G----tgcaaagtgtaaacaaaaaaaaggacagacagaaggacatggggtagaaacctcaaggatgaaaggacagaagatagacatgacatattcatggcagggcatgaaaaa
gi|11 : gttgataatgaggatgtcctgtagcggaatcagttcattgcaaagagccagtagatagtagaaccctaaatctttgttggtatttttgtttgttacttgttgaaatcaaggtgaaaatttaacaaatctttttaaaagccagtgtttcacattgatgaatttctttttaatcactttcaattCAAATAG----GGAATG--GT-AAGGTCAA-----GGTCACAAAGAAGGTCAAGATCAGA-----------------AAAT-------------A-----ATGCTATAGTTGAACAGATATCATTAATA--------TG------TATCG--AT---GT---AA-GAGTT------TTCA----
gi|14 : G----GAAA-A--GGTGAGGTCAA-----GGTCAAAGGAAATGTGAAGGTCAAAT----------------AGATGTCGCC-------A-----A--------------------------TA--------TG------TATCAGGGT---GT---AA-Gcgaaagtg
gi|2 : -------------A-----A--------------------------TA--------TG------TATCA--GCCACGT---AAAGTATG------ATAA----AATATATATTGT----AT-----AGTCTT---CTTTGAATCTGAGCT----AAACAgtttgagaaacatat
gi|16 : aaatcgaggtcacagattgatgtagttgataccCAGT------TTGA----TAAAAATAT-----------------------CTTTGAAAGTGAGCT----AAACGCgaaagtgtcgacggggacagatcgcggagtgaacggaaggagacaaggatggcaagaagacgagcacaaacactatatagcccgcgccatgttatcatggcagagtagtgaaaattttattcacagtaacatagaaagtgaattaaaagcgcaccgtaaacagaatgcgcaccattattccttataatacccaaataaatggcataatctactttcatttgttctcatttgtgttcacctattgtgacgtaataagcagcgtcacgttcatatgcatctttacaaacgtcacgtaaacacccggatgtaaacacttgcaacactcaatcacgcgacggcccttttccgatgggttgtgcgttctgcatacgttgtgatatatctttccaagattgttatcaccggagtgcagagggttcatcaccctaggtagaacaagcacatacatcgggcattttccagaatttcaactttttcattcatacaatggcgatttttgtcgggctaacaaggcggtcaaaatccgctctcactcaggagcgtaggatcatgctgctctaggggtgcaaatggcagtgcactctcatattgtgttccgatggagcggtcagactcatcgtgcttctatacattttactaccgtcctgtttgttcattcaaaaatatggtttctatagaatccacatcagctgcaggcccaaaccccggagatccttctgttatccaggaattgctgttgtttaatttggttcaaaacagcgcgcgtcacattgttcattagattttccccatctctcctgatgcatacttggagatgtctaacgataatcgtaaataacacccggtgacttatcatggtcggacaaaaataagcaatattgtaggcaggggatctccttcaaccgtttcttctaccgtgcgctgcatctcagtaatggatggacatttccgttacaattgacgttccattaccagtggaccgaccaacatgaagaaaacagatgggtggaaagaagttcttcatgagatctattcccctaaagtagccatcttttccaaccatacctgctatgtcatccttccttaattttttgacaaccacggggaatgccttccagtgtgaacgccaaacctgaaaataaaaaccaaattaatgaatctgtcagatagag
gi|8 : AACT----AAACACTAAAT---CCAGAAA-A--GTGAGGTCA----AGGTCATATGGAAA-G-TGATGTAA-AGA-----AATG--------TGGTGTAGAAGTCACA-----AACTTATCAAAAATGTATCTGT-G-TAT-G-AAGGATGATGAAA-GCACCTT---TA--A---------T---GTACTGAAAATTGAGCTA---AATAA-AAAG------------------------------CAGA------------C----------------------------A--G-----A--AG-G---TGG-A-------------------AA--ATACTACTATAT-----GCCCCT-GCCATT---TA--CATGAC-ttcgtgtgacaggacgacagatgga
gi|7 : aaacaT----GAATACCAAATAGCTAGGGAACA--GTGAGATCA----AGGTCA-CAGGGAAGGTCAAGGTCA-AAA--AATAAGGTCACAGT-T-GAATA---GCTACC-----AC--TA---------TATCAG----TGT-ACGAGTTT
gi|6 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgCATCAAAT---ATAGAAT-A--GTGAACTCATTGAAGGTCA-AAGGAAATGTCTTGGTCA-AA--TATTGATG---CAGT-TGA-ATAGATGTCACC-----AA--TATG-------TATCAGC-A-TAC-A-AAGTATGATATAA-ATATCTTCTGGATCA-ATA----GA---GTCTTTAAAACTGAGCTA---AATGC-AAAGTGTAAACAAAAAAAAGG-AC-AG--A----CAGA------------A-------GGACATGGG-----GT-A--GA--AACCTCA--AG-G--ATGA-AAGGACAGAAG-ATAG--------ACAT--------------------GACATA---TT--CATGGC-AGGGCAT---GAAAAtcatgaaat
gi|10 : CAAAT---CCAGAAA-A--GTGAGGTCA----TGGTCA-TACGCAGGGTCAAGGTTA-A---TATTAA------AATATGGCATAG-TG--ACCCAGTAAA--GATG-------TATCTGT-G-TAT-A-AAGTTTGATGAAa
gi|11 : GGGAATG--GTAAGGTCA----AGGTCACAAAGAAG-GTCAAGATCAGAAAATAATGCTA---TAGT-T-GAACAGATATCATT-----AA--TATG-------TATCG---A-TGTAA-GAGTTTagcatccctaa
gi|14 : caaataGGAA-AAGGTGAGGTCA----AGGTCA-AAGGAAATGTGAAGGTCA-A-----------------------ATAGATGTCGCC-----AA--TATG-------TATCAGG-G-TGT-A-AGGTTTGAGAAAC-ATATtcacgaaagtg
gi|4 : TGAGGTCA----AGGACA-AAGTCAATGATAAGGTGA-AAAACATTGATG---CAAT-TGATATAGATGTCACC-----AA--TATG-------TATCATC-A-CGT-A-GAGTTTGATCAAC-ATATCTT---TA--A-A-T----ATATTTTCTTGGAAACTGAGCTA---AACAC-AAAGTAT-------------G-AC-GG--AAGGATAGA------------CCCGTGATGGA-----C-----GA-AAGGA--G-----ACAAA-G--ATGG-AA-GACAG-AC-ATAG--CAAA--A------------------------------------CATGGC-GGGACAT---GAAAATGACC--ACATTTTTTTCATTT-CTCTCTATTCATATGTGTGACAT----A---------TA-----TGTGAAGAGTA---TCAAG-------TAAAAAGATGCGTGCCATTATCC--TATAATAC---AGCAAAT---GCCCTA-CCCAATTCCATTAATTCT-ATAATTTGGTTCATC--TATTGTGACG-AGTA-G--AG-TGTCATGTTCATTGTAC--TCTTTACAA-CGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACATC-ATCA-GCGGATGG-CCTTTTCTGA-GGGTCATA-GTTCTTGCAT-CGTTTGT-GA-ATATCTTTC-AG-AGAC---TGT-ATCA-C-CGAGA---GTGC-AGAGGGTTAATCACC---------CAGG--AAGAACAAA-CAT--ACAT---AG----GGAATTTTAGAAATTTAA--ATTTTT-TCATCAT---ACAA-------TG---GCATTTTGTCGGCTTGAAA-TTCCTCTTT--ATAGGGCC-A-TA-GCTG-CT--CTGGGGCA--AGGAAGTTGCCA-TG--CA-ATTCTCCCCAA--TCAGTACA-TTTTAT------CAGTCGCCTGTTTGTTCCATTCAAAAATAAGGTTTCTAAAGAATCCACATC-ACTG-AGCACCAAA---C---G
gi|2 : tcatcaaataatgacaacgttgaatagtAGGTCA-CAG--ATTGATG---TAGT-TGA---------TACC-----AA--TATG-------TATCAGCCA-CGT-A-AAGTATGATAAAATATATATT---GT--ATA-G----TC---TTCTTTGAATCTGAGCTA---AACAG-AAAGTGTC------------G-AC-GGGGA----CAGATCGCGGAGTGAAC-------GGA-----A-----GG-A--GA--C-----A--AG-G--ATGGCAA-GA-AG-AC-G-AG--C-AC--AAAC-ACTATAT-----AGCCCGCGCCATG---TTATCATGGCAGAGTAGT---GAAAAT-------------TTT-ATTCAC-----------A---GTAACAT----AGAAAGTGAATTAAAAGCGC-------ACCGT-AAA-------CAGA---ATGCGCACCATTATTCCTTATAATACCCAAATAAAT---GGCATAATCTACTTTCATTTGTTCTCAT--TTGTGTTCACC--TATTGTGACGTAATA-AGCAG-CGTCACGTTCATATGCA--TCTTTACAAACGTCACGTAAACACCCGGATGTAAA--CACT-TGCAACAC-TCAATCACGC-GACGGCCCTTTTCCGATGGGTTGTGCGTTC-TGCATACG-TTGT-GATATATCTTTC---CA-AGATTGTT-ATCACC-GGA-----GTGC-AGAGGGTTCATCACCCT--------AGGT--AGAACAAG-CACATACAT
gi|3 : aaatcgTATTGATG---TAGT-TGGGAAATA----ACCG----AA--TATG-------TATCAGCCA-CGT-A-AAGTATGATAAA----ATACT---AT--A-A-GTATAGT---TCTCTTGAATCTGAGGCATAAAACGCCAAAGTGT-------------G-AC-GG--AGGA-CAGAT-----------C-------GGG-----GTGAACGAGA--GA--G-----ACAAGAG--ATGG-AA-GA-AG-ACGATGA--C-AA--ACACTATAATAT-----GC-CCGCGCCATAGTATT--CATGGC-GAGGAGT---GAAAATA------------TTT-ATT--C-----------AT--GTAACACTAGAA---------GT-----AGA-------A---T-AAGAGCACCGTAAACAGATGCGCACCATTATTC--TATAATACCC-AATAAATGCATAA----TCTACTTTCATTTGTT---AT--TTTGGTTCCAGCCTATTGTGACG-AATAAG--AGGCGTCA-GTTCATATGGAGGTCTTTACAAACGTCACGTAAA-ACCCGGATGTAAAACC--TATGCAACAC-TC-ATCA-GCGGACGG-CCTTT-CCGA-TG-TTGTG-GTTCT-GCATACGTTTGTTGATATATCTTTCCAGGAGAT---TGTTATCA-CCGGAG-----TGCA----GAGGG-----TCTCATCACCCAGG---AGAACAAAACATA--CAT--CGGGCAT---TTTCCAAATTTC--A--ACTTTTTCATTCAT---ACAATGCTTTTTG---TCG-GCTTAAGG--GTCAAATCCC-CTTACTATAGGGCAGAGCATGCTG-CT-CTGGCAGG--TGAAATGGC-CCAGTGCCTATATTGTCCATGGGCTCAACACGGTTCTATAAGTTACAGCCGCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCC-AATC-ACTGCAGGCCCAAATCCC---GGAGTCC-TTCTGTTATCCA----GGAATTGCTGTT-GTTT-AATTTGCTTTCAAAACAGCGCGCGTCAC-ATTGTATCAT-AGATTTTCCC-ATCTCTCCCCTTGAATGCATACT-CTTGGAGTACTGTCTAACGATAT-CGTAA-TACACAC--GGTG---CACTATATGGTCGG-ACAAATAAGCAA--------TATTGTAGGCAGGGGAAT-TCTTTCAAACCCGTTC-TTCTAC-ATCTGCGCTGCATC-CAGTAATTGGATGAACT-TTCCGTTTACAAT-GACGT--CATTACC-AGTGG-ACCGACCAAAAC-TGAAGCCAAAACAGATGG-TGAAA-GAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGC---------CATCTTTTCCATACCATACCTGCTATGGCATC-----CCTTCCTTAATTTTTGTACAACCCACTGGGGAATGCCTTCCAGTGTGA-CGCCAAACCTTGAAATTAATAAAACCAAATTAA-GAATCTGTTCAGAATAGGAGAGTCAAATTGGCCAATTCGACAAcgggcattttccagaatttcaactttttcattcatacaatggcgatttttgtcgggctaacaaggcggtcaaaatccgctctcactcaggagcgtaggatcatgctgctctaggggtgcaaatggcagtgcactctcatattgtgttccgatggagcggtcagactcatcgtgcttctatacattttactaccgtcctgtttgttcattcaaaaatatggtttctatagaatccacatcagctgcaggcccaaaccccggagatccttctgttatccaggaattgctgttgtttaatttggttcaaaacagcgcgcgtcacattgttcattagattttccccatctctcctgatgcatacttggagatgtctaacgataatcgtaaataacacccggtgacttatcatggtcggacaaaaataagcaatattgtaggcaggggatctccttcaaccgtttcttctaccgtgcgctgcatctcagtaatggatggacatttccgttacaattgacgttccattaccagtggaccgaccaacatgaagaaaacagatgggtggaaagaagttcttcatgagatctattcccctaaagtagccatcttttccaaccatacctgctatgtcatccttccttaattttttgacaaccacggggaatgccttccagtgtgaacgccaaacctgaaaataaaaaccaaattaatgaatctgtcagatagag
gi|16 : acagAGTTTGATAAAA-ATAT--------------------------CTTTGAAAGTGAGCTA---AACGC-TTCGTGT-------------G-ACAGG--A----C-GA------------C-------AGAT----G-----GA-a
gi|9 : cAGCTA---A-CGC-AAAGTGT-------------GGAC-GA--A-------A------------C---------A-----G-----GACA--GACAG-----A--CA-GTTACAG-AA-GACGG-AC-TGAGGTC-AATTACAC--CTATATT----GCCCCG-GCCATA---TT--CATGGC---GGAATATAGAAATTAAATTT-TACTTT
gi|15 : -GG--A----CAGA------------C-------AGA-----A-----GG-A--GA--G-----A--AG----ATGG-A---------C-ATGA--C-AA--ACA---CTATATTCCTCAGTCTG-CCCATA---TT--CATGGC-GATGCAT---AAAAAT
gi|13 : TTAAAGGTC--ATTATCTTTGTGAG-ATTGGACCA-C--TTTTGTGAATA-GTT--CAATTGTCCA-TGCC--TCA--AGAGGCTCGATTA-ACTGTCTTCTAGTC
gi|2 : TACA-TTTTAC------TACCGTCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCCACATCAGCTGCAGGCCCAAA---CCCCGGAGATCCTTCTGTT----ATCCAGGAATTGCTG-TTG-TTTAATTTGG-TTCAAAACAGCGCGCGTCACA-TTGTT-CATTAGATTTTCCCCATCTCTCC---TGA-TGC---ATACTTGGAG-A-TGTCTAACGATAATCGTAAATA-ACACCCGGTGACTTAT--CATGGTC-GGACAA------AAATAAGCAATATTGTAGGC-AGGGGATCTCCTTCAA--CCGTTTCTTCTACCGTG--CGCTGCATCTCAGTAA-TGGATGGACATTTCCG-TTACAATTGACGTTCCATTA-CCAGT-GGACCGACC--AACATGAAGA--AAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTTTTCCA--------ACC--ATACCTGCTATGTCAT------CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACCTG---AAAATAAAAACCAAATTAATGAATCTGTC--AGAT---AGAGta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACATGTTTAAATCCAAGTGATATAACAAGTCTTTTTGAAAACTTTCTCATGTGTAGACGATTTTCTTTACGAGTCACTTTGAATACCAAATAAAGAA
Unaligned ( gi|17 ): TTTATAGGGCCAGAGCTGCTCTGGGGCAGGGAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111 11111111111111
lowQualScore : 2222 11 111 9999999999999999999999999999999999999999999999999999999999999999999 333333 2 555555 1 1 1111 1111 111 11 1111 1 5555555555555555555555555 666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 2222222222222222222222 1111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 2 1 11 11 1 1 22222222 1 11 22222 1 1 1111 22 1 1 1111111 2 1 1 11 11 1 1 1 1 11111 111 3333 1 1 44444444444 1 22 2222222222222222222222 2 1111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 222222 1 2 1 1 333 22 8888 66666 22 2 22222 222 1111 2 1111111 11 33 22222222222222222222222222222 11 2 33 1 2 11 2 1 2 2 2 33 4444444 33 2 22 2 11 222 22222222222222 1 2 2 1 11 333 1111
lowQualScore : 1111 33 777 0000000000000000000000000000000000000000000000000000000000000000000 0 44 33 1 111111 0 111111 2 2 0 0 1 0 99 2222 5 2222 1 1 555 0 0 2 5 55 66 11 5 0000 0 2 4 1111111111111111111111111 888 5 666666666666666666666666666666666666666666666666666666666666666666666666 77777777 5 5 2222222222222222 66 3 6666666666666666666666 1111111 5 44 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 0 0 2 33 77 0 0 55555555 2 3 0 33 11111 0 0 4444 6 9 1 33 5 0 8888888 0 0 0 2 33 22 0 66 5 3 0 5 88888 1 444 8 1111 0 0 1 22222222222 0 55 7777777777777777777777 22 0 6666 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22 888888 2 0 0 8 0 5 55 555 99 5555 00000 99 3 66666 6 888 7 9999 7 7 3 9999999 7 88 6 00 55555555555555555555555555555 44 3 3 0 00 2 3 33 6 6 3 6 0 7 3 3 00 0000000 00 3 99 6 6 7 3 88 333 88888888888888 5 2 7 22 3 3 7 4 99 22 7 7 111 0 1111 77 66 2
lowQualScore : .... .. ... ................................................................... . .. .. . ...... . ...... . . . . . . .. .... . .... . . ... . . . . .. .. .. . .... . . . ......................... ... . ........................................................................ ........ . . ................ .. . ...................... ....... . .. .......................................................................................... .. . . . .. .. . . ........ . . . .. ..... . . .... . . . .. . . ....... . . . . .. .. . .. . . . . ..... . ... . .... . . . ........... . .. ...................... .. . .... . ......................................................................................................................................................................... .. ...... . . . . . . .. ... .. .... ..... .. . ..... . ... . .... . . . ....... . .. . .. ............................. .. . . . .. . . .. . . . . . . . . .. ....... .. . .. . . . . .. ... .............. . . . .. . . . . .. .. . . ... . .... .. .. .
lowQualScore : 2222 88 555 5555555555555555555555555555555555555555555555555555555555555555555 8 55 55 0 444444 0 000000 5 3 0 2 0 7 22 1111 7 1111 7 4 999 1 1 2 0 22 99 66 0 6666 0 6 4 0000000000000000000000000 888 0 444444444444444444444444444444444444444444444444444444444444444444444444 22222222 0 0 9999999999999999 99 4 8888888888888888888888 9999999 0 44 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 0 0 0 88 55 0 0 88888888 5 2 0 88 55555 0 0 8888 5 8 0 88 5 0 5555555 0 0 0 5 22 55 0 55 5 2 0 5 55555 0 888 8 2222 0 0 0 88888888888 0 55 0000000000000000000000 00 0 2222 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 00 888888 5 0 0 8 0 0 00 000 77 0000 00000 33 7 00000 7 777 3 3333 3 3 3 7777777 3 33 7 00 77777777777777777777777777777 00 7 3 7 33 0 3 00 7 7 7 0 7 0 7 7 33 3333333 77 7 00 7 7 3 3 33 333 33333333333333 7 0 3 00 3 7 3 0 77 00 3 3 000 7 2222 00 55 5
consensus : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAA----A------------T--AG--------------TT-------A-ATA--------TGTATCGGTGTAAGNGTTTTCA--TGC-AAATATTGTCATNGAAATGTTGCTTTNAAACCGAGCTAAAC-ACCAAATNCGGAAAA--GTGAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCT------TNAA-AG----GT---TTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC-GG--A----CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAGAC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCATA---TT--CATGGC-GGGGNATGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GT-AAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCATGGGTTTCC--A-AATTTCAACTTTTT-CGNTCAT-ACA-----A----T-------TTTGTCGGCT--TAA---GGC-GTC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGT----A-TGGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTT----ATCCAGGAATTGCTG-TTG-TTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCA-TAGATTTTCCCCATCTCTCCC--TGAATGCATA-TACTTGGAGTA-TGTCTAACGATA-TCGTAA--ATACACA--CGGTG-ACTCAC--CATGGTC-GGACAA------AAATAAGCAATATTGTAGGCAGGGGNAT-TCTTTCAA--CCGTTCCTTCTA-CGTCTGCGCTGCATC-CAGTAA-CGGATGAAC-TTTCCG-TTACAA-TGACGT--CATTA-CCAGT-GGACCGACC--AAC-TGAAGC-AAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA--T----------ACCATACCTGCTATG-CATCCCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACCT-GAAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
Reference ( family-2158 ) : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTC---AAATAA----A------------T--GG--------------CC-------A-ATA--------TGTATCAGCGTAAGNATTTTNA--TAT-AAATATT-TCATCG----ATTGCTTTGAAACTGAGCTAAAC-ACCAAATNCGGGAAA--GTGAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTTTGATAAAA-ATATNT------TNAA-AG----GT---TTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC-GG--A----CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAGAC-ATAG--CAA--ACAC-ACTATAT-GCCCCG-G-----CCATA---TT--CATGGC-GAGGCGTGAAAATAAC----CAC---TTTTTTATTC-C-------------ATGTAACAT----A---------TT-----C-------GNAT-AA-------GT-AAA-AGA-TGCGCGCCATTATTC--TATAATACCCAA-TAAA-TG-NC-T-A-TCTACTTTCATTTGTTCT-AT--TTTGGTTC--ANCTATTGTGACG-AAT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACAC-TCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--AG-AGANTG-T-ATCACGGAG----GTGC-AGAGGGT-TNATCACCCT--CAGG---AGAAC-AAACATA-ACA--TCGGGCATGGANTTTT--A-AANNTCAA-TTTTT-CGATCAT-ACA-----A----T-------TTTGNCGGTT--C-----GGCTGTC-AA----TNCC-CTTA--AT-AGGGCCG-------A-TA-GCTGC-TCTNGCGGN----A-TGGGANGNCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-GTTTTAT------CAGCCG-CCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGGCCCAAA---CGGAGNCCCTTCTGTTATCCATCCAGGAATTGCTGTTTGTTTTAATTTGNTTTCAAAACAGCGCGCGTCACAATTGTNTCATTAGATTTTCCCCATCTCTCCCCTTGAATGCATANTACTTGGAGTACTGTCTAACGATANTCGTAA--ATACACACCCGGTG-ACTCACTACATGGTCGGGACAAATAAGCAAATAAGCAATATTGTAGGCAGGGGGATCTCCTTCAAACCCGTTCCTTCTACCGTNTGCGCTGCATCTCAGTAATTGGATGGACNTTTCCGTTTACAATTGACGTTCCATTACCCAGTGGGACCGACCAAAACATGAAGNCAAAACAGATGGGTGGAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA--TC-TTTTCCACNCCATACCTGCTATGNCATCCCTTCCTTAATTTTTNNACAACCCACTGGGGAATGCCTTCCAGTGTGAACGCCAAACCTNGAAANNANNAAAACCAAATTAATGAATCTGTCCAGGATAGGAGAGTCAAATTGGCCAATTCGACAA
gi|1 : TACCAAATAG----GAAATA--GGGAGATCAATTGGGTCAACGGGAAGGTCATGGTA---AAA-AA----A------------T---------------------------A-ATA--------TGTATCAGTGTAAGCATTTTCA--TAC-AAATATTGTCATTG----GTTGCTTTGAAAGTGAGCTAAAC-ACCGAATTTGGGAAA--GTGAGGTCA----AGGTCA-AAGGAA----ATGCTAAGGTCAAAACTATTGATGCAGT-TGGGATAGA--TGTTACC-AAT----ATCTATCAGC-ACGTGGAGTTTGATAAAG-ATATAT------TGAA-AG----GT---TTCTTTGAAACTGAGCTA---AACAC-AGCGTGT-------------G-AC-GG--A----TAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAGAC-ATAG--CAA--ACACTACTATAT-ACTCCG-G-----CCATA---CT--CATGGC-GAGGAATGAAAATGACCTTACAC---TTTTTTATTT-C-------------A-GTGACAT----A---------CT-----C-------GCAT-AA-------GT--AG-AGA-TGCACACCATTGTCC--TATAATA--CAG-CAAATTA-CC-T-T-TCCAATTTCATTTGTTCT-AT--TTTGGTT------TATTATGACG-AGT-AG--A-GTGTCACGTTCATTTTAC--TTTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AGCAGAGGG-C-AGCGCGGAGGCATGTGCAAGAAGGG-GGAGCACTCTTACAGGTAAAGAAC-AAACATA-ACATTTC-AGTATGGGTTCTC--A-AAGGTCAA-TTTTTGTGAGCATGACA-----AG---T-------TTTGGCAGCTGAC-----GGCTGGC-AA----TGCC-CTCA--AG-AGGGCCT-------ATTA-GCTGCTTCTTGTCGT----ACTAGAATATCACCATGTA---------ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGCTG-CTTGTTTGTTCCATTCAACAAAATGGTTTCTATAGAATCCAAATC-GCTG-AGCACCAAA---CGGAAG-TCTTCTGTT--------AGGAATTGCTG--TG--TTAATTTG--TTCAAAAAAAGATGCGTCGCAATTGTA-CA-TAGATTTTCCCAATCTCTCCC--TGAATGC-TAGTACTTTGAGTA-TGTCTA--------CGTAATTATACACA---GGTGCATTC------TGGTC--GACAA--------------AGTATTGTAGGC-GGGGTAT-TCTTTCAA--CCGTTCTTTTTA-CGTCT-CG-TGCATC-CAGTAAACGGATGAAC--TTCCG-TTACAA-TGACGT--CATTA--CAGT--GACCGACC--AAC-TGAAGC--AAACCGATGGTTGG-AAGAAGTTCTTCA-TGAGATCTATTCCCCGCTAAAGTAGCAATAATGGGTGACAAGTCATTTTTCAC-----------------ATTCC----TTAATTTTTTGACAA-CCAC-GGGAAATGTCTTCCAGTGTGAGAGCAAAACCTGTAAAAAAAAAAAACC-AACCAATGAATGTGTT--GAAT---CGAGCCCTATATGTCAATTCTACAA
gi|10 : aacCAAATCCAGAAAA--GTGAGGTCA----TGGTCA-TACGCA----GGGTCAAGGTT--AA-TATTAA---AATATGGCATAG---TGAC-CC-AGTAAAGATGTATCTGT-GTATAAAGTTTGATGAAA-GCATCC------CTAA-
gi|11 : CAAATAG----GGAATG--GTAAGGTCAA---GGTCACAAAGAAGGTCAAGATCAGAAAATAATGCTA------------T--AGTTGAACAGATATCATT-------A-ATA--------TGTATCGATGTAAGAGTTTTCA--
gi|14 : GGAAAAGGTGAGGTCA----AGGTCA-AAGGAA----ATGTGAAGGTCAA--------------------ATAGA--TGTCGCC-AAT----ATGTATCAGG-GTGTAAGGTTTGAGAAAC-ATATcgaaagtg
gi|15 : -GG--A----CAG-A------------C-------AGA-----A-----GG-A--GAG-----A--AG--ATGG-A--------C-ATGA--CAA--ACAC---TATAT-TCCTCA-GTCTGCCCATA---TT--CATGGC-GATGCATAAAAAT
gi|16 : AGTTTGATAAAA-ATAT--------------------------CTTTGAAAGTGAGCTA---AACGC-TTCGTGT-------------G-ACAGG--A----C-G-A------------C-------AGAT----G-----GA-
gi|2 : cTCGAGGTCACAG--ATTGATGTAGT-TG------A--T---ACC-AAT----ATGTATCAGCCACGTAAAGTATGATAAAATATATAT------TGTATAG----TC---TTCTTTGAATCTGAGCTA---AACAG-AAAGTGTC------------G-AC-GGGGA----CAG-ATCGCGGAGTGAAC-------GGA-----A-----GG-A--GAC-----A--AG-GATGGCAA-GA-AGAC-G-AG--CAC--AAAC-ACTATAT-AGCCCGCG-----CCATG---TTATCATGGCAGAGTAGTGAAAAT----------------TTTATTCAC-------------A-GTAACAT----AGAAAGTGAATTAAAAGC-------GCAC-C--------GT-AAACAGAATGCGCACCATTATTCCTTATAATACCCAAATAAA-TG-GCAT-AATCTACTTTCATTTGTTCTCAT--TTGTGTTC--ACCTATTGTGACGTAAT-AAGCA-GCGTCACGTTCATATGCA--TCTTTACAAACGTCACGTAAACACCCGGATGTAAA--CACT-TGCAACAC-TCAATCACGCG-ACGGCCCTTTTCCGATGGGTTGTGCGTTCT-GCATACGTT-G-TGATATATCTTTC--CA-AGATTG-TTATCACCGGA----GTGC-AGAGGGT-TCATCACCCT---AGGT--AGAAC-AAGCACATACA--TCGGGCAT---TTTCC--AGAATTTCAACTTTTT-CATTCAT-ACA-----A----TGGCGATTTTTGTCGGGC--TAACAAGGCGGTC-AAAATCCGCT-CTCA--CTCAGGAGCGTAGGATCA-T--GCTGC-TCTAGGGGTGCAAA-TGG--------CA-GTGCACTCTCATATTGTGTTCCGATGGAGCGGTCAGACTCATCGTGCTTCTATAC-ATTTTAC------TA-CCGTCCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCACATCAGCTGCAGGCCCAAACCCCGGAGATCCTTCTGTT----ATCCAGGAATTGCTG-TTG-TTTAATTTGG-TTCAAAACAGCGCGCGTCAC-ATTGT-TCATTAGATTTTCCCCATCTCTCC---TG-ATGCA---TACTTGGAG-A-TGTCTAACGATAATCGTAA--ATA-ACACCCGGTG-ACTTAT--CATGGTC-GGACAA------AAATAAGCAATATTGTAGGCA-GGGGATCTCCTTCAA--CCGTTTCTTCTACCG--TGCGCTGCATCTCAGTAA-TGGATGGACATTTCCG-TTACAATTGACGTTCCATTA-CCAGT-GGACCGACC--AACATGAAG--AAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-------------ACCATACCTGCTATGTCAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACCT-GAAA--ATAAAAACCAAATTAATGAATCTGTC--AGATAG
gi|3 : aaaAG-TATTGATGTAGT-TGGGAAATA------ACCGAAT----ATGTATCAGCCACGTAAAGTATGATAAAA----TAC------TATA-AGTATAGT---TCTCTTGAATCTGAGGCATAAAACGCCAAAGTGT-------------G-AC-GG--AGGA-CAG-AT-----------C-------GGG-----GTGAACGAGA--GAG-----ACAAGAGATGG-AA-GA-AGACGATGA--CAA--ACACTATAATAT-GCCCGC-G-----CCATAGTATT--CATGGC-GAGGAGTGAAAATA---------------TTTATT--C-------------ATGTAACACTAGAA---------GT-----A-------GAAT-AAGAGCACCGT-AAACAGA-TGCGCACCATTATTC--TATAATACCCAA-TAAA-TG-CA-TAA-TCTACTTTCATTTGT--T-AT--TTTGGTTCCAGCCTATTGTGACG-AATAAG--AGGCGTCA-GTTCATATGGAGGTCTTTACAAACGTCACGTAAA-ACCCGGATGTAAAACC--TATGCAACAC-TCA-TCA-GCGGACGGCC--TTTCCGA--TGTTGTG-GTTC-TGCATACGTTTGTTGATATATCTTTCCAGG-AGATTGTT-ATCACCGGA----GTGC-AGAGGGTCTCATCACC----CAGG---AGAACAAAACAT--ACA--TCGGGCAT---TTTCC--A-AATTTCAACTTTTT-CATTCAT-ACA-----ATGCTT-------TTTGTCGGCT--TAA---GG--GTCAAA----TCCC-CTTACTAT-AGGGCAG-------AGCATGCTGC-TCTGGCAGG------TGAAATGGC-CCA-GTGC----CTATATTGT---CCA----------TGGGCTCA----------ACACGGTTCTATAAGTTACAGCCG-CCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCA-ATC-ACTGCAGGCCCAAATCCCGGAGT-CCTTCTGTT----ATCCAGGAATTGCTG-TTG-TTTAATTTGCTTTCAAAACAGCGCGCGTCAC-ATTGTATCA-TAGATTTT-CCCATCTCTCCCCTTGAATGCATACT-CTTGGAGTACTGTCTAACGATA-TCGT-A--ATACACA--CGGTG----CACTATATGGTCGG---------ACAAATAAGCAATATTGTAGGCAGGGGAAT-TCTTTCAAACCCGTT-CTTCTA-CATCTGCGCTGCATC-CAGTAATTGGATGAAC-TTTCCGTTTACAA-TGACGT--CATTA-CCAGT-GGACCGACCAAAAC-TGAAGCCAAAACAGAT-GGT-GAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA--T----------ACCATACCTGCTATGGCATCCCTTCCTTAATTTTTGTACAACCCACTGGGGAATGCCTTCCAGTGTG-ACGCCAAACCTTGAAATTAATAAAACCAAATTAA-GAATCTGTTCAGAATAGGAGAGTCAAATTGGCCAATTCGACAAag
gi|4 : acTGAGGTCA----AGGACA-AAGTCA----ATGATAAGGTGAAAAACATTGATGCAAT-TGATATAGA--TGTCACC-AAT----ATGTATCATC-ACGTAGAGTTTGATCAAC-ATATCT------TTAA-AT----ATATTTTCTTGGAAACTGAGCTA---AACAC-AAAGTAT-------------G-AC-GG--AAGGATAG-A------------CCCGTGATGGA-----C-----GA-AAGGAG-----ACAAA-GATGG-AA-GACAGAC-ATAG--CAA--A-----------------------------A-------CATGGC-GGGACATGAAAATGAC----CACATTTTTTTCATTT-CTCTCTATTCATATGTGTGACAT----A---------TA-----TGTGAAGAGTATCAA-------GTAAAA-AGA-TGCGTGCCATTATCC--TATAATA--CAG-CAAA-TGCCC-T-A-CCCAATTCCATTAATTCT-ATAATTTGGTTC--ATCTATTGTGACG-AGT-AG--A-GTGTCATGTTCAT-TGTAC-TCTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACATCA-TCA-GCGGATGGCC-TTTTCTGA-GGGTCATA-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AG-AGACTG-T-ATCACCGAGA---GTGC-AGAGGGT-TAATCACC----CAGGA--AGAAC-AAACAT--ACA--TAG-----GGAATTTTAGA-AATTTAAA-TTTTT-TCATCAT-ACAATGGCA----T-------TTTGTCGGCT--T-----GA------AA----TTCCTCTTT--AT-AGGGCC--------A-TA-GCTGC-TCTGG-GGC----A--AGGAAGTTGCCA--TG------CA-ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGTCG-CCTGTTTGTTCCATTCAAAAATAAGGTTTCTAAAGAATCCACATC-ACTG-AGCACCAAA---CGa
gi|5 : tcatcaaataatgacaacgttgaatagtCCAAATAG----GGAATATAGTGAGGTCAA---GATCACAGGGAAGGTCAAGGTCAGAAAATAA----ATCCATAGTTGAGT--AG--------------CT-------ATATA--------TGTAACCAC-TAA-TATGTCCAAGTGTAAAAGATT-TCATAAAAATATTGCTTTCAAACCGAGCTTGACAAAAAAATATGGAAAA--GTGCAGTCA----AGGTCA-AAAGAA----ATG
gi|6 : gttgataatgaggatgtcctgtagcggaatcagttcattgcaaagagccagtagatagtagaaccctaaatctttgttggtatttttgtttgttacttgttgaaatcaaggtgaaaatttaacaaatctttttaaaagccagtgtttcacattgatgaatttctttttaatcactttcaattC-ATCAAATATAGAATA--GTGAACTCATTGAAGGTCA-AAGGAA----ATGTCTTGGTCAAA--TATTGATGCAGT-TG-AATAGA--TGTCACC-AAT----ATGTATCAGC-ATACAAAGTATGATATAA-ATATCTTCTGGATCAA-TA----GA---GTCTTTAAAACTGAGCTA---AATGC-AAAGTGTAAACAAAAAAAAGG-AC-AG--A----CAG-A------------A-------GGACATGGG-----GT-A--GAAACCTCA--AG-GATGA-AAGGACAGA---------AG--ATAG-AC-AT----------G-----ACATA---TT--CATGGC-AGGGCATGAAAAgacatattgtaatgaacattgtaattcatcaggaccctggaatttgctacagatgtattaacag
gi|7 : TACCAAATAGCTAGGGAACA--GTGAGATCAA---GGTCACAGGGAAGGTCAAGGTC---AAA-AA----A------------TAAGG--------------TCACAGTTGA-ATAGCTACCACTATATCAGTGTACGAGTTTTCA--TG--AAATa
gi|8 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgtgaaAAAC-AAACTAAAC-ACTAAATCCAGAAAA--GTGAGGTCA----AGGTCATATGGAAAGTGATGTAAAG----AAA-TG-TGGTGTAGA-AGTCACAAACTTATCA---AAA----ATGTATCTGT-GTATGAAGGATGATGAAA-GCACCT------TTAA--------T---GTACTGAAAATTGAGCTA---AATAA-AAAG------------------------------CAG-A------------C----------------------------AG-----A--AG-G-TGG-A-----------------AA--ATACTACTATAT-GCCCCT-G-----CCATT---TA--CATGAC-
gi|9 : AGCTA---A-CGC-AAAGTGT-------------GGAC-GA--AA---CAGGA------------C-------AGA-----C--------A--GAC-----A--GT-TACAG-AA-GACGGAC-TGAGGTCAATTACAC--CTATATTGCCCCG-G-----CCATA---TT--CATGGC-GGAATATAGAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATGTTTAAATCCAAGTGATATAACAAGTCTTTTTGAAAACTTTCTCATGTGTAGACGATTTTCTTTACGAGTCACTTTGAATACCAAATAAAGAA
Unaligned ( gi|13 ): TTAAAGGTCATTATCTTTGTGAGATTGGACCACTTTTGTGAATAGTTCAATTGTCCATGCCTCAAGAGGCTCGATTAACTGTCTTCTAGTCTA
Unaligned ( gi|17 ): TTTATAGGGCCAGAGCTGCTCTGGGGCAGGGAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 11 111 6666666666666666666666666666666666666 222222 222222 1 2222 1 1111 1111 111 11 1111 1 555555555555555555555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111 2222222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 11 11 1 1 22222222 1 11 22222 1 1 1111 22 1 1 1111111 1 1 1 11 11 1 1 1 1 22222 111 2222 1 1 33333 222 1 22 11 444 1 11 1 777777777777777777 1 44444444444444444444 1 11111 6666666666666 1 88888888888888888888888888888888888888888888888888888888888888888888888 1 222222 1 1 1 11 33 1 11 1 222 333 1 1111111 11 1 444444444 111 11 1 1 111 1 1 11 22 1 1 11 11 1 222 1 11 222 1 2222222 1 1 1 222 11 111
lowQualScore : 1111 33 777 3333333333333333333333333333333333333 66 888888 1 555555 5 1 4444 1 6 0 0 1 5 5 2222 5 2222 1 1 555 0 0 2 5 55 66 11 5 0000 0 1 4 111111111111111111111 5 888 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 5 5 22222222222222222 66 1 6666666666666666666666 888 66 1 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0 2 33 77 0 0 11111111 1 3 0 33 00000 0 0 4444 6 9 1 33 5 0 8888888 9 0 0 2 33 22 0 66 5 3 0 5 22222 0 444 2 0000 0 0 1 44444 333 0 55 33 2 0 555 0 0 11 0 000000000000000000 0 22222222222222222222 1 0 77777 0000000000000 0 0 88888888888888888888888888888888888888888888888888888888888888888888888 0 888888 2 0 55 8 0 5 22 6 44 7 7 7 11 0 3 44 3 6 555 7 7 333 7 3 4444444 7 88 3 6 333333333 6 333 7 1 88 2 3 222 6 3 3 44 00 3 3 88 6 6 88 3 777 6 6 7 3 88 333 6 7 8888888 3 3 7 3 333 88 7 7 999 9999 22 22 1
lowQualScore : .... .. ... ..................................... .. ...... . ...... . . .... . . . . . . . .... . .... . . ... . . . . .. .. .. . .... . . . ..................... . ... . .................................................................................. .. . . ................. .. . ...................... ... .. . . .......................................................................................... .. . . .. .. . . ........ . . . .. ..... . . .... . . . .. . . ....... . . . . .. .. . .. . . . . ..... . ... . .... . . . ..... ... . .. .. . . ... . . .. . .................. . .................... . . ..... ............. . . ....................................................................... . ...... . . .. . . . .. . .. . . . .. . . .. . . ... . . ... . . ....... . .. . . ......... . ... . . .. . . ... . . . .. .. . . .. . . .. . ... . . . . .. ... . . ....... . . . . ... .. . . ... .... .. .. .
lowQualScore : 2222 88 555 5555555555555555555555555555555555555 88 888888 0 222222 0 0 5555 0 7 0 2 0 7 7 1111 7 1111 7 4 999 1 1 2 0 22 99 66 0 6666 0 0 4 222222222222222222222 7 888 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 99 0 0 66666666666666666 99 4 8888888888888888888888 888 99 0 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 0 0 88 55 0 0 00000000 0 2 0 88 88888 0 0 8888 5 8 0 88 5 0 5555555 0 0 0 5 22 55 0 55 5 2 0 5 00000 8 888 5 0000 0 0 0 22222 555 0 55 88 5 2 000 2 0 55 0 888888888888888888 0 55555555555555555555 0 0 88888 2222222222222 0 2 22222222222222222222222222222222222222222222222222222222222222222222222 0 888888 5 0 00 8 0 0 00 5 33 3 3 3 77 7 3 77 3 7 000 3 3 333 3 3 3333333 3 33 3 7 333333333 7 777 3 0 33 0 3 333 7 3 3 00 77 3 3 33 7 7 33 3 333 7 7 3 3 33 333 0 3 3333333 3 3 3 3 333 33 3 3 000 2222 00 00 0
consensus : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAG--------------TTGAATAGC------TGTATCGGTGTA------AGNGTTTTCA--TGN-AAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCT------TTAA-A---GNT--TTCT-TTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCG-CGGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGCATA-C-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-ACCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
Reference ( family-2158 ) : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAA----ATAG--------------TT-AATA--------TGTATCGGTGTA------AGNGTTTTCA--TGC-AAATATTGTCATNGAAATGTTGCTTTNAAACCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCT------TNAA-A---GGT--TTCT-TTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGNA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCATGGGTTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGTA-TGGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGCATA-TACTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTGACTCAC--CATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGNATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCATACCATACCTGCTAT-G-CATCCCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
gi|1 : TACCAAATAG----GAAATA--GGGAGATCAATTGGGTCAACGGGAAGGTCATGGTAAAAAAATAA---------------------------TA--------TGTATCAGTGTA------AGCATTTTCA--TAC-AAATATTGTCATTG----GTTGCTTTGAAAGTGAGCTAAAC-ACCGAATTTGGGAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGCTAAGGTCAAAACTATTGATGCAGT-TGGGATAGA--TGTTACC-AAT----ATCTATCAGC-ACGTGGAGTTTGATAAAG-ATATAT------TGAA-A---GGT--TTCT-TTGAAACTGAGCTA---AACAC-AGCGTGT-------------G-AC----GG--A---TAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-ACTCCG-G-----CCA---TACT--CATGGCGAGGAA-TGAAAATGACCTTACAC---TTTTTTATTT-C-------------A-GTGACAT----A---------CT-----C-------GCAT-AA-------GTAG--AGA-TGCACACCATTGTCC--TATAATA--CAG-CAAATTA-CC-T-T-TCCAATTTCATTTGTTCT-AT--TTTGGTT------TATTATGACG-AGT-AG--A-GTGTCACGTTCATTTTAC--TTTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AGCAGAGGG-C-AGCGCGGAGGCATGTGCAAGAAGGG-GGAGCACTCTTACAGGTAAAGAAC-AAACATA-ACATTTC-AGTATGGGTTCTCA-AAGGTCAATTTTTGTGAGCATGACA-----AG---T-------TTTGGCAG-CT--GACGGCTG-GC-AA----TGCC-CTCA--AG-AGGGCCT-------ATTA-GCTGCTTCTTGTCGTACTAGAATATCACCATGTA---------ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGCTG-CTTGTTTGTTCCATTCAACAAAATGGTTTCTATAGAATCCAAATC-GCTG-AGCACCAAA---CGGAAG-TCTTCTGTT----AGGAATTGCTG-TG-TTAATTTG--TTCAAAAAAAGATGCGTCGCAATTGTA-CAT-AGATTTTCCCAATCTCTCCC--TGAATGC-TAGTACTTTGAGTA-TGTCTA--------CGTAATTATA-CACA-GGTG---CAT--TCTGGTC-GACAA--------AGTATTGTAGGC-GGGGTATTCTTTCAA--CCGTTCTTTTTAC-GTCT-CG-TGCATC-CAGTAAA-CGGATGAAC--TTCCG-TTACAAT-GACGT--CATTA-CAGT-GACCGACC--AAC-TGAAG-C-AAACCGATGGTTGG-AAGAAGTTCTTCA-TGAGATCTATTCCCCGCTAAAGTAGCAATAATGGGTGACAAGTCAT------TTT-T-CA--CATTCCTTAATTTTTTGACAA-CCAC-GGGAAATGTCTTCCAGTGTGAGAGCAAAACC-TGTAAAAA--AAAAAAACC-AACCAATGAATGTGTT--GAAT---CGAGCCCTATATGTCAATTCTACAA
gi|10 : aacCAAATCCAGAAAAG-T-GAGGTCA----TGGTCA-TACGCA----GGGTCAAGGTT--AA-TATTAA---AATATGGCATAG---TGAC-CC-AGTAAAGATGTATCTGT-GTATAAAGTTTGATGAAA-GCATCC------CTAA-
gi|11 : CAAATAG----GGAATG--GTAAGGTCAA---GGTCACAAAGAAGGTCAAGATCAGAAAATAATGCTATAGTTGAACAGATATCATT-AATA--------TGTATCGATGTA------AGAGTTTTCA--CGA-AAGT
gi|14 : GGAAAAGGT-GAGGTCA----AGGTCA-AAGGAA----ATGTGAAGGTCAA--------------------ATAGA--TGTCGCC-AAT----ATGTATCAGG-GTGTAAGGTTTGAGAAAC-ATATg
gi|15 : ----GG--A---CAG-A------------C-------AGA-----A-----GG-A--GAG-----A--AG--ATGG-A---------C-ATGA--CAA--ACA---CTATAT-TCCTCA-GTCTGCCCA---TATT--CATGGCGATGCA-TAAAAAT
gi|16 : AGTTTGATAAAA-ATATCT------T-------------------TGAAAGTGAGCTA---AACGC-TTCGTGT-------------G-ACA---GG--A---C-G-A------------C-------AGAT----G-----GA-
gi|2 : cTCGAGGTCACAG--ATTGATGTAGT-TG------A--T---ACC-AAT----ATGTATCAGCCACGTAAAGTATGATAAAATATATAT------TGTATA---GTC--TTCT-TTGAATCTGAGCTA---AACAG-AAAGTGTC------------G-AC----GGGGA---CAG-ATCGCGGAGTGAAC-------GGA-----A-----GG-A--GAC-----A--AG-GATGGCAA-GA-AG-AC-G-AG--CAC--AAAC-ACTATAT-AGCCCGCG-----CCA---TGTTATCATGGCAGAGTAGTGAAAAT----------------TTTATTCAC-------------A-GTAACAT----AGAAAGTGAATTAAAAGC-------GCAC-C--------GTAAACAGAATGCGCACCATTATTCCTTATAATACCCAAATAAA-TG-GCAT-AATCTACTTTCATTTGTTCTCAT--TTGTGTTC--ACCTATTGTGACGTAAT-AAGCA-GCGTCACGTTCATATGCA--TCTTTACAAACGTCACGTAAACACCCGGATGTAAA--CACT-TGCAACAC-TCAATCACGCG-ACGGCCCTTTTCCGATGGGTTGTGCGTTCT-GCATACGTT-G-TGATATATCTTTC--CA-AGATTG-TTATCACCGGAG----TGC-AGAGGGT-TCATCACCCT---AGGT--AGAAC-AAGCACATACA--TCGGGCAT---TTTCCAGAATTTCAACTTTTTCATTCAT-ACA-----A----TGGCGATTTTTGTCGGGCTAACAAGGC-GGTC-AAAATCCGCT-CTCA--CTCAGGAGCGTAGGATCA-T--GCTGC-TCTAGGGGTG-CA-AATG--GC-A-GTGCACTCTCATATTGTGTTCCGATGGAGCGGTCAGACTCATCGTGCTTCTATAC-ATTTTAC------TA-CCGTCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCCACATCAGCTGCAGGCCCAAACCCCGGAGATCCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGG-TTCAAAACAGCGCGCGTCAC-ATTGT-TCATTAGATTTTCCCCATCTCTCC---TGA-TGCATA---CTTGGAG-A-TGTCTAACGATAATCGTAA--ATAACACCCGGTGACTTAT--CATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGATCTCCTTCAA--CCGTTTCTTCTACCGT--GCGCTGCATCTCAGT-AA-TGGATGGACATTTCCG-TTACAATTGACGTTCCATTACCAGTGGACCGACC--AACATGAAG--AAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-ACCATACCTGCTAT-GTCAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--ATAAAAACCAAATTAATGAATCTGTC--AGATAG
gi|3 : aaaAG-TATTGATGTAGT-TGGGAAATA------ACCGAAT----ATGTATCAGCCACGTAAAGTATGATAAAA--TA-CT------ATAA-G---TATAGTTCTCTTGAATCTGAGGCATAAAACGCCAAAGTGT-------------G-AC----GG--AGGACAG-AT-----------C-------GGG-----GTGAACGAGA--GAG-----ACAAGAGATGG-AA-GA-AG-ACGATGA--CAA--ACACTATAATAT-GCCCGC-G-----CCATAGTATT--CATGGCGAGGAG-TGAAAATA---------------TTTA-TT-C-------------ATGTAACACTAGAA---------GT-----A-------GAAT-AAGAGCACCGTAAACAGA-TGCGCACCATTATTC--TATAATACCCAA-TAAA-TG-CA-TAA-TCTACTTTCATTTGT--T-AT--TTTGGTTCCAGCCTATTGTGACG-AATAAG--AGGCGTCA-GTTCATATGGAGGTCTTTACAAACGTCACGTAAA-ACCCGGATGTAAAACC--TATGCAACAC-TCA-TCA-GCGGACGGCC--TTTCCGA--TGTTGTG-GTTC-TGCATACGTTTGTTGATATATCTTTCCAGG-AGATTGTT-ATCACC-GGA---GTGC-AGAGGGTCTCATCACC----CAGG---AGAACAAAACAT--ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCATTCAT-ACA-----ATGCTT-------TTTGTCGG-CT--TAAGG--G-TCAAA----TCCC-CTTACTAT-AGGGCAG-------AGCATGCTGC-TCTGGCAG-G-TGAAATGGC-CCA-GTGC----CTATATTGT---CCA----------TGGGCTCA----------ACACGGTTCTATAAGTTACAGCCG-CCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCA-ATC-ACTGCAGGCCCAAATCCCGGAGT-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGCTTTCAAAACAGCGCGCGTCAC-ATTGTATCAT-AGATTTT-CCCATCTCTCCCCTTGAATGCATA-CTCTTGGAGTACTGTCTAACGATA-TCGT-A--ATA-CACACGGTG---CACTATATGGTCGGAC--AAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAAACCCGTT-CTTCTAC-ATCTGCGCTGCATC-CAGT-AATTGGATGAAC-TTTCCGTTTACAAT-GACGT--CATTACCAGTGGACCGACCAAAAC-TGAAGCCAAAACAGAT-GGT-GAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCATACCATACCTGCTATGG-CATCCCTTCCTTAATTTTTGTACAACCCACTGGGGAATGCCTTCCAGTGTG-ACGCCAAACCTTG---AAATTAATAAAACCAAATTAA-GAATCTGTTCAGAATAGGAGAGTCAAATTGGCCAATTCGACAAag
gi|4 : acGAATAG-TTGAGGTCA----AGGACA-AAGTCA----ATGATAAGGTGAAAAACATTGATGCAAT-TGATATAGA--TGTCACC-AAT----ATGTATCATC-ACGTAGAGTTTGATCAAC-ATATCT------TTAA-ATATATT--TTCT-TGGAAACTGAGCTA---AACAC-AAAGTAT-------------G-ACGGAAGG--A---TAG-A------------CCCGTGATGGA-----C-----GA-AAGGAGAC---A--AA-GATGG-AA-GACAG-AC-ATAG--CAA--A-AC-----------------------------------ATGGCGGGACA-TGAAAATGAC----CACATTTTTTTCATTT-CTCTCTATTCATATGTGTGACAT----A---------TA-----TGTGAAGAGTATCAA-------GTAAAAAGA-TGCGTGCCATTATCC--TATAATA--CAG-CAAA-TGCCC-T-A-CCCAATTCCATTAATTCT-ATAATTTGGTTC--ATCTATTGTGACG-AGT-AG--A-GTGTCATGTTCAT-TGTAC-TCTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACATCA-TCA-GCGGATGGCC-TTTTCTGA-GGGTCATA-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AG-AGACTG-T-ATCACCGAGA---GTGC-AGAGGGT-TAATCACC----CAGGA--AGAAC-AAACAT--ACA--TAGGGAAT---TTTAGA-AATTTAAATTTTTTC-ATCAT-ACAATGGCA----T-------TTTGTCGG-CT--TGA---------AA----TTCCTCTTT--AT-AGGGCC--------A-TA-GCTGC-TCTGG-GGCA-AGGAA-GTTGCCA--TG------CA-ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGTCG-CCTGTTTGTTCCATTCAAAAATAAGGTTTCTAAAGAATCCACATC-ACTG-AGCACCAAACa
gi|5 : tcatcaaataatgacaacgttCCAAATAG----GGAATATAGTGAGGTCAA---GATCACAGGGAAGGTCAAGGTCAGAAAATAAATCCATAG--------------TTGAGTAGC------TATAT--ATGTAACCACTAATATGTCCAAGTGTAAAAGATT-TCATAAAAATATTGCTTTCAAACCGAGCTTGACAAAAAAATATGGAAAAG-T-GCAGTCA----AGGTCA-AAAGAA----ATGg
gi|6 : gttgataatgaggatgtcctgtagcggaatcagttcattgcaaagagccagtagatagtagaaccctaaatctttgttggtatttttgtttgttacttgttgaaatcaaggtgaaaatttaacaaatctttttaaaagccagtgtttcacattgatgaatttctttttaatcactttcaattC-ATCAAATATAGAATAG-T-GAACTCATTGAAGGTCA-AAGGAA----ATGTCTTGGTCAAA--TATTGATGCAGT-TG-AATAGA--TGTCACC-AAT----ATGTATCAGC-ATACAAAGTATGATATAA-ATATCTTCTGGATCAA-T---AGA--GTCT-TTAAAACTGAGCTA---AATGC-AAAGTGTAAACAAAAAAAAGG-AC----AG--A---CAG-A------------A-------GGACATGGG-----GT-A--GAAACCTCA--AG-GATGA-AAGGACAGAAG-ATAG-------ACAT----------------G-----ACA---TATT--CATGGCAGGGCA-TGAAAAgacatattgtaatgaacattgtaattcatcaggaccctggaatttgctacagatgtattaacag
gi|7 : TACCAAATAGCTAGGGAACA--GTGAGATCAA---GGTCACAGGGAAGGTCAAGGTCAAAAAATAAGGTCACAG--------------TTGAATAGCTACCACTATATCAGTGTA------CGAGTTTTCA--TG--AAATa
gi|8 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgtgaaAAACAAACTAAAC-ACTAAATCCAGAAAAG-T-GAGGTCA----AGGTCATATGGAAAGTGATGTAAAG----AAA-TG-TGGTGTAGA-AGTCACAAACTTATCA---AAA----ATGTATCTGT-GTATGAAGGATGATGAAA-GCACCT------TTAA-------T--GTAC-TGAAAATTGAGCTA---AATAA-AAAG--------------------------------CAG-A------------C----------------------------AG-----A--AG-G-TGG-A------------------AA--ATACTACTATAT-GCCCCT-G-----CCA---TTTA--CATGAC
gi|9 : AGCTA---A-CGC-AAAGTGT-------------GGAC----GA--AA--CAGGA------------C-------AGA-----C--------A--GAC-----A--GT-TACAG-AA-GACGG-AC-TGAGGTCAATTACAC--CTATATTGCCCCG-G-----CCA---TATT--CATGGCGGAATA-TAGAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATGTTTAAATCCAAGTGATATAACAAGTCTTTTTGAAAACTTTCTCATGTGTAGACGATTTTCTTTACGAGTCACTTTGAATACCAAATAAAGAA
Unaligned ( gi|13 ): TTAAAGGTCATTATCTTTGTGAGATTGGACCACTTTTGTGAATAGTTCAATTGTCCATGCCTCAAGAGGCTCGATTAACTGTCTTCTAGTCTA
Unaligned ( gi|17 ): TTTATAGGGCCAGAGCTGCTCTGGGGCAGGGAAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 11 111 1111 888888888888888 222222 11 11 1 2222 1 1111 1111 111 11 1111 1 555555555555555555555555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111 2222222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 11 11 1 1 22222222 1 11 22222 1 1 1111 22 1 1 1111111 1 1 1 11 11 1 1 1 1 22222 111 2222 1 1 33333 222 1 22 11 111 1 11 1 777777777777777777 1 44444444444444444444 1 11111 6666666666666 1 99999999999999999999999999999999999999999999999999999999999999999999999 1 222222 1 1 1 11 33 1 11 1 222 11 22 1 1111111 11 1 22222222 111 11 1 1 111 1 1 11 22 1 1 11 11 1 222 1 11 222 111 2222222 1 1 1 222 11 111
lowQualScore : 1111 33 777 3333 0 0 111111111111111 66 888888 1 33 11 5 1 4444 1 1 0 0 1 5 5 2222 5 2222 1 1 555 0 0 2 5 55 66 11 5 0000 0 1 4 000000000000000000000000 8 888 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 5 5 22222222222222222 66 1 6666666666666666666666 888 66 1 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0 2 33 77 0 0 11111111 1 3 0 33 00000 0 0 4444 6 9 1 33 5 0 8888888 9 0 0 2 33 22 0 66 5 3 0 5 22222 0 444 2 0000 0 0 1 44444 333 0 55 33 2 0 777 0 0 11 0 000000000000000000 0 22222222222222222222 1 0 77777 0000000000000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 888888 2 0 55 8 0 5 22 6 44 7 7 7 11 0 3 44 3 6 555 7 88 55 6 7 3 4444444 7 88 3 6 44444444 6 333 7 88 2 3 222 6 3 3 44 00 3 3 88 6 6 88 3 777 6 6 7 3 88 333 777 7 6666666 3 3 7 3 333 88 7 7 999 9999 22 22 1
lowQualScore : .... .. ... .... . . ............... .. ...... . .. .. . . .... . . . . . . . .... . .... . . ... . . . . .. .. .. . .... . . . ........................ . ... . .................................................................................. .. . . ................. .. . ...................... ... .. . . .......................................................................................... .. . . .. .. . . ........ . . . .. ..... . . .... . . . .. . . ....... . . . . .. .. . .. . . . . ..... . ... . .... . . . ..... ... . .. .. . . ... . . .. . .................. . .................... . . ..... ............. . . ....................................................................... . ...... . . .. . . . .. . .. . . . .. . . .. . . ... . .. .. . . . ....... . .. . . ........ . ... . .. . . ... . . . .. .. . . .. . . .. . ... . . . . .. ... ... . ....... . . . . ... .. . . ... .... .. .. .
lowQualScore : 2222 88 555 8888 8 8 222222222222222 88 888888 0 88 00 0 0 5555 0 0 0 2 0 7 7 1111 7 1111 7 4 999 1 1 2 0 22 99 66 0 6666 0 0 4 777777777777777777777777 3 888 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 99 0 0 66666666666666666 99 4 8888888888888888888888 888 99 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 0 0 88 55 0 0 00000000 0 2 0 88 88888 0 0 8888 5 8 0 88 5 0 5555555 0 0 0 5 22 55 0 55 5 2 0 5 00000 8 888 5 0000 0 0 0 22222 555 0 55 88 5 2 555 2 0 55 0 888888888888888888 0 55555555555555555555 0 0 88888 2222222222222 0 2 22222222222222222222222222222222222222222222222222222222222222222222222 0 888888 5 0 00 8 0 0 00 5 33 3 3 3 77 7 3 77 3 7 000 3 33 33 7 3 3 3333333 3 33 3 7 00000000 7 777 3 33 0 3 333 7 3 3 00 77 3 3 33 7 7 33 3 333 7 7 3 3 33 333 777 3 7777777 3 3 3 3 333 33 3 3 000 2222 00 00 0
consensus : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT---------TAA----A---GTTTTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
Reference ( family-2158 ) : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG------C-------TGTATCGGTGTA------AGNGTTTTCA--TG-NAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT---------TAA----A---GNTTTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--ATAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
gi|1 : TACCAAATAG----GAAATA--GGGAGATCAATTGGGTCAACGGGAAGGTCATGGTAAAAAAATAA-------------TA---------------TGTATCAGTGTA------AGCATTTTCA--TA-CAAATATTGTCATTG----GTTGCTTTGAAAGTGAGCTAAAC-ACCGAATTTGGGAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGCTAAGGTCAAAACTATTGATGCAGT-TGGGATAGA--TGTTACC-AAT----ATCTATCAGC-ACGTGGAGTTTGATAAAG-ATATATT---------GAA----A---GGTTTCTTTGAAACTGAGCTA---AACAC-AGCGTGT-------------G-AC----GG--A---TAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-ACTCCG-G-----CCA---TACT--CATGGCGAGGAA-TGAAAATGACCTTACAC---TTTTTTATTT-C-------------A-GTGACAT----A---------CT-----C-------GCAT-AA-------GTAG--AGA-TGCACACCATTGTCC--TATAATA--CAG-CAAATTA-CC-T-T-TCCAATTTCATTTGTTCT-AT--TTTGGTT------TATTATGACG-AGT-AG--A-GTGTCACGTTCATTTTAC--TTTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AGCAGAGGG-C-AGCGCGGAGGCATGTGCAAGAAGGG-GGAGCACTCTTACAGGTAAAGAAC-AAACATA-ACATTTC-AGTATGGGTTCTCA-AAGGTCAATTTTTGTGAGCATGACA-----AG---T-------TTTGGCAG-CT--GACGGCTG-GC-AA----TGCC-CTCA--AG-AGGGCCT-------ATTA-GCTGCTTCTTGTCGTACTAGAATATCACCATGTA---------ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGCTG-CTTGTTTGTTCCATTCAACAAAATGGTTTCTATAGAATCCAAATC-GCTG-AGCACCAAA---CGGAAG-TCTTCTGTT----AGGAATTGCTG-TG-TTAATTTG--TTCAAAAAAAGATGCGTCGCAATTGTA-CAT-AGATTTTCCCAATCTCTCCC--TGAATGCTAGTAC-TTT-GAGTA-TGTCTA--------CGTAATTATA-CACA-GGTG---CAT--TCTGGTC-GACAA--------AGTATTGTAGGC-GGGGTATTCTTTCAA--CCGTTCTTTTTAC-GTCT-CG-TGCATC-CAGTAAA-CGGATGAAC--TTCCG-TTACAAT-GACGT--CATTA-CAGT-GACCGACC--AAC-TGAAG-C-AAACCGATGGTTGG-AAGAAGTTCTTCA-TGAGATCTATTCCCCGCTAAAGTAGCAATAATGGGTGACA-AGTCAT------TTT-T-CA--CATTCCTTAATTTTTTGACAA-CCAC-GGGAAATGTCTTCCAGTGTGAGAGCAAAACC-TGTAAAAA--AAAAAAACC-AACCAATGAATGTGTT--GAAT---CGAGCCCTATATGTCAATTCTACAA
gi|10 : aacCAAATCCAGAAAAG-T-GAGGTCA----TGGTCA-TACGCA----GGGTCAAGGTT--AA-TATTAA---AATATGGCATAG---TGAC-CC-AGTAAAGATGTATCTGT-GTATAAAGTTTGATGAAA-GCATCCC---------TAA----
gi|11 : CAAATAG----GGAATG--GTAAGGTCAA---GGTCACAAAGAAGGTCAAGATCAGAAAATAATGCTATAGTTGAACAGATAT--CATTAATATGTATCGATGTA------AGAGTTTTCA--CG-AAAGT
gi|14 : GGAAAAGGT-GAGGTCA----AGGTCA-AAGGAA----ATGTGAAGGTCAA--------------------ATAGA--TGTCGCC-AAT----ATGTATCAGG-GTGTAAGGTTTGAGAAAC-ATATg
gi|15 : ----GG--A---CAG-A------------C-------AGA-----A-----GG-A--GAG-----A--AG--ATGG-A---------C-ATGA--CAA--ACA---CTATAT-TCCTCA-GTCTGCCCA---TATT--CATGGCGATGCA-TAAAAAT
gi|16 : AGTTTGATAAAA-ATATCTT---------T-------------------GAAAGTGAGCTA---AACGC-TTCGTGT-------------G-ACA---GG--A---C-G-A------------C-------AGAT----G-----GA-
gi|2 : cTCGAGGTCACAG--ATTGATGTAGT-TG------A--T---ACC-AAT----ATGTATCAGCCACGTAAAGTATGATAAAATATATATTG--------TAT----A---GTCTTCTTTGAATCTGAGCTA---AACAG-AAAGTGTC------------G-AC----GGGGA---CAG-ATCGCGGAGTGAAC-------GGA-----A-----GG-A--GAC-----A--AG-GATGGCAA-GA-AG-AC-G-AG--CAC--AAAC-ACTATAT-AGCCCGCG-----CCA---TGTTATCATGGCAGAGTAGTGAAAAT----------------TTTATTCAC-------------A-GTAACAT----AGAAAGTGAATTAAAAGC-------GCAC-C--------GTAAACAGAATGCGCACCATTATTCCTTATAATACCCAAATAAA-TG-GCAT-AATCTACTTTCATTTGTTCTCAT--TTGTGTTC--ACCTATTGTGACGTAAT-AAGCA-GCGTCACGTTCATATGCA--TCTTTACAAACGTCACGTAAACACCCGGATGTAAA--CACT-TGCAACAC-TCAATCACGCG-ACGGCCCTTTTCCGATGGGTTGTGCGTTCT-GCATACGTT-G-TGATATATCTTTC--CA-AGATTG-TTATCACCGGAG----TGC-AGAGGGT-TCATCACCCT---AGGT--AGAAC-AAGCACATACA--TCGGGCAT---TTTCCAGAATTTCAACTTTTTCATTCAT-ACA-----A----TGGCGATTTTTGTCGGGCTAACAAGGC-GGTC-AAAATCCGCT-CTCA--CTCAGGAGCGTAGGATCA-T--GCTGC-TCTAGGGGTGC-A-AATG--GC-A-GTGCACTCTCATATTGTGTTCCGATGGAGCGGTCAGACTCATCGTGCTTCTATAC-ATTTTAC------TA-CCGTCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCCACATCAGCTGCAGGCCCAAACCCCGGAGATCCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGG-TTCAAAACAGCGCGCGTCAC-ATTGT-TCATTAGATTTTCCCCATCTCTCC---TGA-TGC--ATAC--TTGGAG-A-TGTCTAACGATAATCGTAA--ATAACACCCGGTGACTTAT--CATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGATCTCCTTCAA--CCGTTTCTTCTACCGT--GCGCTGCATCTCAGT-AA-TGGATGGACATTTCCG-TTACAATTGACGTTCCATTACCAGTGGACCGACC--AACATGAAG--AAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-GTCAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--ATAAAAACCAAATTAATGAATCTGTC--AGATAG
gi|3 : aaaAG-TATTGATGTAGT-TGGGAAATA------ACCGAAT----ATGTATCAGCCACGTAAAGTATGATAAAA--TA-CTA---------TAAGTATA---GTTCTCTT-GAATCTGAGGCATAAAACGCCAAAGTGT-------------G-AC----GG--AGGACAG-AT-----------C-------GGG-----GTGAACGAGA--GAG-----ACAAGAGATGG-AA-GA-AG-ACGATGA--CAA--ACACTATAATAT-GCCCGC-G-----CCATAGTATT--CATGGCGAGGAG-TGAAAATA---------------TTTA-TT-C-------------ATGTAACACTAGAA---------GT-----A-------GAAT-AAGAGCACCGTAAACAGA-TGCGCACCATTATTC--TATAATACCCAA-TAAA-TG-CA-TAA-TCTACTTTCATTTGT--T-AT--TTTGGTTCCAGCCTATTGTGACG-AATAAG--AGGCGTCA-GTTCATATGGAGGTCTTTACAAACGTCACGTAAA-ACCCGGATGTAAAACC--TATGCAACAC-TCA-TCA-GCGGACGGCC--TTTCCGA--TGTTGTG-GTTC-TGCATACGTTTGTTGATATATCTTTCCAGG-AGATTGTT-ATCACC-GGA---GTGC-AGAGGGTCTCATCACC----CAGG---AGAACAAAACAT--ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCATTCAT-ACA-----ATGCTT-------TTTGTCGG-CT--TAAGG--G-TCAAA----TCCC-CTTACTAT-AGGGCAG-------AGCATGCTGC-TCTGGCAG-GT-GAAATGGC-CCA-GTGC----CTATATTGT---CCA----------TGGGCTCA----------ACACGGTTCTATAAGTTACAGCCG-CCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCA-ATC-ACTGCAGGCCCAAATCCCGGAGT-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGCTTTCAAAACAGCGCGCGTCAC-ATTGTATCAT-AGATTTT-CCCATCTCTCCCCTTGAATGC--ATACTCTTGGAGTACTGTCTAACGATA-TCGT-A--ATA-CACACGGTG---CACTATATGGTCGGAC--AAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAAACCCGTT-CTTCTAC-ATCTGCGCTGCATC-CAGT-AATTGGATGAAC-TTTCCGTTTACAAT-GACGT--CATTACCAGTGGACCGACCAAAAC-TGAAGCCAAAACAGAT-GGT-GAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCATA-CCATACCTGCTATGG-CATCCCTTCCTTAATTTTTGTACAACCCACTGGGGAATGCCTTCCAGTGTG-ACGCCAAACCTTG---AAATTAATAAAACCAAATTAA-GAATCTGTTCAGAATAGGAGAGTCAAATTGGCCAATTCGACAAag
gi|4 : acGAATAG-TTGAGGTCA----AGGACA-AAGTCA----ATGATAAGGTGAAAAACATTGATGCAAT-TGATATAGA--TGTCACC-AAT----ATGTATCATC-ACGTAGAGTTTGATCAAC-ATATCTT---------TAA----ATATATTTTCTTGGAAACTGAGCTA---AACAC-AAAGTAT-------------G-ACGGAAGG--A---TAG-A------------CCCGTGATGGA-----C-----GA-AAGGAGAC---A--AA-GATGG-AA-GACAG-AC-ATAG--CAA--A-AC-----------------------------------ATGGCGGGACA-TGAAAATGAC----CACATTTTTTTCATTT-CTCTCTATTCATATGTGTGACAT----A---------TA-----TGTGAAGAGTATCAA-------GTAAAAAGA-TGCGTGCCATTATCC--TATAATA--CAG-CAAA-TGCCC-T-A-CCCAATTCCATTAATTCT-ATAATTTGGTTC--ATCTATTGTGACG-AGT-AG--A-GTGTCATGTTCAT-TGTAC-TCTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACATCA-TCA-GCGGATGGCC-TTTTCTGA-GGGTCATA-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AG-AGACTG-T-ATCACCGAGA---GTGC-AGAGGGT-TAATCACC----CAGGA--AGAAC-AAACAT--ACA--TAGGGAAT---TTTAGA-AATTTAAATTTTTTC-ATCAT-ACAATGGCA----T-------TTTGTCGG-CT--TGA---------AA----TTCCTCTTT--AT-AGGGCC--------A-TA-GCTGC-TCTGG-GGCAA-GGAA-GTTGCCA--TG------CA-ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGTCG-CCTGTTTGTTCCATTCAAAAATAAGGTTTCTAAAGAATCCACATC-ACTG-AGCACCAAACa
gi|5 : tcatcaaataatgacaacgttCCAAATAG----GGAATATAGTGAGGTCAA---GATCACAGGGAAGGTCAAGGTCAGAAAATAAATCCATAGTTGAGTAG------C-------TATAT--ATGTAACCACTAATATGTCCAAGTGTAAAAGATT-TCATAAAAATATTGCTTTCAAACCGAGCTTGACAAAAAAATATGGAAAAG-T-GCAGTCA----AGGTCA-AAAGAA----ATGg
gi|6 : gttgataatgaggatgtcctgtagcggaatcagttcattgcaaagagccagtagatagtagaaccctaaatctttgttggtatttttgtttgttacttgttgaaatcaaggtgaaaatttaacaaatctttttaaaagccagtgtttcacattgatgaatttctttttaatcactttcaattC-ATCAAATATAGAATAG-T-GAACTCATTGAAGGTCA-AAGGAA----ATGTCTTGGTCAAA--TATTGATGCAGT-TG-AATAGA--TGTCACC-AAT----ATGTATCAGC-ATACAAAGTATGATATAA-ATATCTTCTGGATCAATAG----A---G---TCTTTAAAACTGAGCTA---AATGC-AAAGTGTAAACAAAAAAAAGG-AC----AG--A---CAG-A------------A-------GGACATGGG-----GT-A--GAAACCTCA--AG-GATGA-AAGGACAGAAG-ATAG-------ACAT----------------G-----ACA---TATT--CATGGCAGGGCA-TGAAAAgacatattgtaatgaacattgtaattcatcaggaccctggaatttgctacagatgtattaacag
gi|7 : TACCAAATAGCTAGGGAACA--GTGAGATCAA---GGTCACAGGGAAGGTCAAGGTCAAAAAATAAGGTCACAGTTGAATAGCTACCAC-------TATATCAGTGTA------CGAGTTTTCA--TG-AAAa
gi|8 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgtgaaAAACAAACTAAAC-ACTAAATCCAGAAAAG-T-GAGGTCA----AGGTCATATGGAAAGTGATGTAAAG----AAA-TG-TGGTGTAGA-AGTCACAAACTTATCA---AAA----ATGTATCTGT-GTATGAAGGATGATGAAA-GCACCTT---------TAA----------TGTACTGAAAATTGAGCTA---AATAA-AAAG--------------------------------CAG-A------------C----------------------------AG-----A--AG-G-TGG-A------------------AA--ATACTACTATAT-GCCCCT-G-----CCA---TTTA--CATGACt
gi|9 : AGCTA---A-CGC-AAAGTGT-------------GGAC----GA--AA--CAGGA------------C-------AGA-----C--------A--GAC-----A--GT-TACAG-AA-GACGG-AC-TGAGGTCAATTACAC--CTATATTGCCCCG-G-----CCA---TATT--CATGGCGGAATA-TAGAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATGTTTAAATCCAAGTGATATAACAAGTCTTTTTGAAAACTTTCTCATGTGTAGACGATTTTCTTTACGAGTCACTTTGAATACCAAATAAAGAA
Unaligned ( gi|13 ): TTAAAGGTCATTATCTTTGTGAGATTGGACCACTTTTGTGAATAGTTCAATTGTCCATGCCTCAAGAGGCTCGATTAACTGTCTTCTAGTCTA
Unaligned ( gi|17 ): TTTATAGGGCCAGAGCTGCTCTGGGGCAGGGAAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 11 111 1111 77777777777777 222222 11 1 1 2222 1 1111 1111 111 11 1111 1 444444444444444444444444 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111 2222222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 11 11 1 1 22222222 1 11 22222 1 1 1111 22 1 1 1111111 1 1 1 11 11 1 1 1 1 22222 111 2222 1 1 33333 222 1 22 11 111 1 11 1 777777777777777777 1 44444444444444444444 1 11111 6666666666666 1 99999999999999999999999999999999999999999999999999999999999999999999999 1 222222 1 1 1 11 33 1 11 1 222 111 22 1 1111111 11 1 22222222 111 11 1 1 111 1 1 11 22 1 1 11 11 1 222 1 11 222 111 2222222 1 1 1 222 11 111
lowQualScore : 1111 33 777 3333 0 11 55555555555555 66 888888 1 33 0 5 1 4444 1 1 0 0 1 5 5 2222 5 2222 1 1 555 0 0 2 5 55 66 11 5 0000 0 1 4 888888888888888888888888 8 888 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 5 5 22222222222222222 66 1 6666666666666666666666 888 66 1 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0 2 33 77 0 0 11111111 1 3 0 33 00000 0 0 4444 6 9 1 33 5 0 8888888 9 0 0 2 33 22 0 66 5 3 0 5 22222 0 444 2 0000 0 0 1 44444 333 0 55 33 2 0 777 0 0 11 0 000000000000000000 0 22222222222222222222 1 0 77777 0000000000000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 888888 2 0 55 8 0 5 22 6 44 7 7 7 11 0 3 44 3 6 555 7 999 55 6 7 3 4444444 7 88 3 6 44444444 6 333 7 88 2 3 222 6 3 3 44 00 3 3 88 6 6 88 3 777 6 6 7 3 88 333 777 7 6666666 3 3 7 3 333 88 7 7 999 9999 22 22 1
lowQualScore : .... .. ... .... . .. .............. .. ...... . .. . . . .... . . . . . . . .... . .... . . ... . . . . .. .. .. . .... . . . ........................ . ... . .................................................................................. .. . . ................. .. . ...................... ... .. . . .......................................................................................... .. . . .. .. . . ........ . . . .. ..... . . .... . . . .. . . ....... . . . . .. .. . .. . . . . ..... . ... . .... . . . ..... ... . .. .. . . ... . . .. . .................. . .................... . . ..... ............. . . ....................................................................... . ...... . . .. . . . .. . .. . . . .. . . .. . . ... . ... .. . . . ....... . .. . . ........ . ... . .. . . ... . . . .. .. . . .. . . .. . ... . . . . .. ... ... . ....... . . . . ... .. . . ... .... .. .. .
lowQualScore : 2222 88 555 8888 8 55 55555555555555 88 888888 0 88 0 0 0 5555 0 0 0 2 0 7 7 1111 7 1111 7 4 999 1 1 2 0 22 99 66 0 6666 0 0 4 444444444444444444444444 3 888 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 99 0 0 66666666666666666 99 4 8888888888888888888888 888 99 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 0 0 88 55 0 0 00000000 0 2 0 88 88888 0 0 8888 5 8 0 88 5 0 5555555 0 0 0 5 22 55 0 55 5 2 0 5 00000 8 888 5 0000 0 0 0 22222 555 0 55 88 5 2 555 2 0 55 0 888888888888888888 0 55555555555555555555 0 0 88888 2222222222222 0 2 22222222222222222222222222222222222222222222222222222222222222222222222 0 888888 5 0 00 8 0 0 00 5 33 3 3 3 77 7 3 77 3 7 000 3 000 33 7 3 3 3333333 3 33 3 7 00000000 7 777 3 33 0 3 333 7 3 3 00 77 3 3 33 7 7 33 3 333 7 7 3 3 33 333 777 3 7777777 3 3 3 3 333 33 3 3 000 2222 00 00 0
consensus : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT---------TAA----A---GTTTTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
Reference ( family-2158 ) : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT---------TAA----A---GTTTTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
gi|1 : TACCAAATAG----GAAATA--GGGAGATCAATTGGGTCAACGGGAAGGTCATGGTAAAAAAATAA-----------------TA-----------TGTATCAGTGTA------AGCATTTTCA--TA-CAAATATTGTCATTG----GTTGCTTTGAAAGTGAGCTAAAC-ACCGAATTTGGGAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGCTAAGGTCAAAACTATTGATGCAGT-TGGGATAGA--TGTTACC-AAT----ATCTATCAGC-ACGTGGAGTTTGATAAAG-ATATATT---------GAA----A---GGTTTCTTTGAAACTGAGCTA---AACAC-AGCGTGT-------------G-AC----GG--A---TAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-ACTCCG-G-----CCA---TACT--CATGGCGAGGAA-TGAAAATGACCTTACAC---TTTTTTATTT-C-------------A-GTGACAT----A---------CT-----C-------GCAT-AA-------GTAG--AGA-TGCACACCATTGTCC--TATAATA--CAG-CAAATTA-CC-T-T-TCCAATTTCATTTGTTCT-AT--TTTGGTT------TATTATGACG-AGT-AG--A-GTGTCACGTTCATTTTAC--TTTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AGCAGAGGG-C-AGCGCGGAGGCATGTGCAAGAAGGG-GGAGCACTCTTACAGGTAAAGAAC-AAACATA-ACATTTC-AGTATGGGTTCTCA-AAGGTCAATTTTTGTGAGCATGACA-----AG---T-------TTTGGCAG-CT--GACGGCTG-GC-AA----TGCC-CTCA--AG-AGGGCCT-------ATTA-GCTGCTTCTTGTCGTACTAGAATATCACCATGTA---------ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGCTG-CTTGTTTGTTCCATTCAACAAAATGGTTTCTATAGAATCCAAATC-GCTG-AGCACCAAA---CGGAAG-TCTTCTGTT----AGGAATTGCTG-TG-TTAATTTG--TTCAAAAAAAGATGCGTCGCAATTGTA-CAT-AGATTTTCCCAATCTCTCCC--TGAATGCTAGTAC-TTT-GAGTA-TGTCTA--------CGTAATTATA-CACA-GGTG---CAT--TCTGGTC-GACAA--------AGTATTGTAGGC-GGGGTATTCTTTCAA--CCGTTCTTTTTAC-GTCT-CG-TGCATC-CAGTAAA-CGGATGAAC--TTCCG-TTACAAT-GACGT--CATTA-CAGT-GACCGACC--AAC-TGAAG-C-AAACCGATGGTTGG-AAGAAGTTCTTCA-TGAGATCTATTCCCCGCTAAAGTAGCAATAATGGGTGACA-AGTCAT------TTT-T-CA--CATTCCTTAATTTTTTGACAA-CCAC-GGGAAATGTCTTCCAGTGTGAGAGCAAAACC-TGTAAAAA--AAAAAAACC-AACCAATGAATGTGTT--GAAT---CGAGCCCTATATGTCAATTCTACAA
gi|10 : aacCAAATCCAGAAAAG-T-GAGGTCA----TGGTCA-TACGCA----GGGTCAAGGTT--AA-TATTAA---AATATGGCATAG---TGAC-CC-AGTAAAGATGTATCTGT-GTATAAAGTTTGATGAAA-GCATCCC---------TAA----
gi|11 : CAAATAG----GGAATG--GTAAGGTCAA---GGTCACAAAGAAGGTCAAGATCAGAAAATAATGCTATAGTTGAACAGATAT--CATTAATATGTATCGATGTA------AGAGTTTTCA--CG-AAAGT
gi|14 : GGAAAAGGT-GAGGTCA----AGGTCA-AAGGAA----ATGTGAAGGTCAA--------------------ATAGA--TGTCGCC-AAT----ATGTATCAGG-GTGTAAGGTTTGAGAAAC-ATATg
gi|15 : ----GG--A---CAG-A------------C-------AGA-----A-----GG-A--GAG-----A--AG--ATGG-A---------C-ATGA--CAA--ACA---CTATAT-TCCTCA-GTCTGCCCA---TATT--CATGGCGATGCA-TAAAAAT
gi|16 : AGTTTGATAAAA-ATATCTT---------T-------------------GAAAGTGAGCTA---AACGC-TTCGTGT-------------G-ACA---GG--A---C-G-A------------C-------AGAT----G-----GA-
gi|2 : cTCGAGGTCACAG--ATTGATGTAGT-TG------A--T---ACC-AAT----ATGTATCAGCCACGTAAAGTATGATAAAATATATATTG--------TAT----A---GTCTTCTTTGAATCTGAGCTA---AACAG-AAAGTGTC------------G-AC----GGGGA---CAG-ATCGCGGAGTGAAC-------GGA-----A-----GG-A--GAC-----A--AG-GATGGCAA-GA-AG-AC-G-AG--CAC--AAAC-ACTATAT-AGCCCGCG-----CCA---TGTTATCATGGCAGAGTAGTGAAAAT----------------TTTATTCAC-------------A-GTAACAT----AGAAAGTGAATTAAAAGC-------GCAC-C--------GTAAACAGAATGCGCACCATTATTCCTTATAATACCCAAATAAA-TG-GCAT-AATCTACTTTCATTTGTTCTCAT--TTGTGTTC--ACCTATTGTGACGTAAT-AAGCA-GCGTCACGTTCATATGCA--TCTTTACAAACGTCACGTAAACACCCGGATGTAAA--CACT-TGCAACAC-TCAATCACGCG-ACGGCCCTTTTCCGATGGGTTGTGCGTTCT-GCATACGTT-G-TGATATATCTTTC--CA-AGATTG-TTATCACCGGAG----TGC-AGAGGGT-TCATCACCCT---AGGT--AGAAC-AAGCACATACA--TCGGGCAT---TTTCCAGAATTTCAACTTTTTCATTCAT-ACA-----A----TGGCGATTTTTGTCGGGCTAACAAGGC-GGTC-AAAATCCGCT-CTCA--CTCAGGAGCGTAGGATCA-T--GCTGC-TCTAGGGGTGC-A-AATG--GC-A-GTGCACTCTCATATTGTGTTCCGATGGAGCGGTCAGACTCATCGTGCTTCTATAC-ATTTTAC------TA-CCGTCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCCACATCAGCTGCAGGCCCAAACCCCGGAGATCCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGG-TTCAAAACAGCGCGCGTCAC-ATTGT-TCATTAGATTTTCCCCATCTCTCC---TGA-TGC--ATAC--TTGGAG-A-TGTCTAACGATAATCGTAA--ATAACACCCGGTGACTTAT--CATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGATCTCCTTCAA--CCGTTTCTTCTACCGT--GCGCTGCATCTCAGT-AA-TGGATGGACATTTCCG-TTACAATTGACGTTCCATTACCAGTGGACCGACC--AACATGAAG--AAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-GTCAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--ATAAAAACCAAATTAATGAATCTGTC--AGATAG
gi|3 : aaaAG-TATTGATGTAGT-TGGGAAATA------ACCGAAT----ATGTATCAGCCACGTAAAGTATGATAAAA--TA-CTA---------TAAGTATA---GTTCTCTT-GAATCTGAGGCATAAAACGCCAAAGTGT-------------G-AC----GG--AGGACAG-AT-----------C-------GGG-----GTGAACGAGA--GAG-----ACAAGAGATGG-AA-GA-AG-ACGATGA--CAA--ACACTATAATAT-GCCCGC-G-----CCATAGTATT--CATGGCGAGGAG-TGAAAATA---------------TTTA-TT-C-------------ATGTAACACTAGAA---------GT-----A-------GAAT-AAGAGCACCGTAAACAGA-TGCGCACCATTATTC--TATAATACCCAA-TAAA-TG-CA-TAA-TCTACTTTCATTTGT--T-AT--TTTGGTTCCAGCCTATTGTGACG-AATAAG--AGGCGTCA-GTTCATATGGAGGTCTTTACAAACGTCACGTAAA-ACCCGGATGTAAAACC--TATGCAACAC-TCA-TCA-GCGGACGGCC--TTTCCGA--TGTTGTG-GTTC-TGCATACGTTTGTTGATATATCTTTCCAGG-AGATTGTT-ATCACC-GGA---GTGC-AGAGGGTCTCATCACC----CAGG---AGAACAAAACAT--ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCATTCAT-ACA-----ATGCTT-------TTTGTCGG-CT--TAAGG--G-TCAAA----TCCC-CTTACTAT-AGGGCAG-------AGCATGCTGC-TCTGGCAG-GT-GAAATGGC-CCA-GTGC----CTATATTGT---CCA----------TGGGCTCA----------ACACGGTTCTATAAGTTACAGCCG-CCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCA-ATC-ACTGCAGGCCCAAATCCCGGAGT-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGCTTTCAAAACAGCGCGCGTCAC-ATTGTATCAT-AGATTTT-CCCATCTCTCCCCTTGAATGC--ATACTCTTGGAGTACTGTCTAACGATA-TCGT-A--ATA-CACACGGTG---CACTATATGGTCGGAC--AAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAAACCCGTT-CTTCTAC-ATCTGCGCTGCATC-CAGT-AATTGGATGAAC-TTTCCGTTTACAAT-GACGT--CATTACCAGTGGACCGACCAAAAC-TGAAGCCAAAACAGAT-GGT-GAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCATA-CCATACCTGCTATGG-CATCCCTTCCTTAATTTTTGTACAACCCACTGGGGAATGCCTTCCAGTGTG-ACGCCAAACCTTG---AAATTAATAAAACCAAATTAA-GAATCTGTTCAGAATAGGAGAGTCAAATTGGCCAATTCGACAAag
gi|4 : acGAATAG-TTGAGGTCA----AGGACA-AAGTCA----ATGATAAGGTGAAAAACATTGATGCAAT-TGATATAGA--TGTCACC-AAT----ATGTATCATC-ACGTAGAGTTTGATCAAC-ATATCTT---------TAA----ATATATTTTCTTGGAAACTGAGCTA---AACAC-AAAGTAT-------------G-ACGGAAGG--A---TAG-A------------CCCGTGATGGA-----C-----GA-AAGGAGAC---A--AA-GATGG-AA-GACAG-AC-ATAG--CAA--A-AC-----------------------------------ATGGCGGGACA-TGAAAATGAC----CACATTTTTTTCATTT-CTCTCTATTCATATGTGTGACAT----A---------TA-----TGTGAAGAGTATCAA-------GTAAAAAGA-TGCGTGCCATTATCC--TATAATA--CAG-CAAA-TGCCC-T-A-CCCAATTCCATTAATTCT-ATAATTTGGTTC--ATCTATTGTGACG-AGT-AG--A-GTGTCATGTTCAT-TGTAC-TCTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACATCA-TCA-GCGGATGGCC-TTTTCTGA-GGGTCATA-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AG-AGACTG-T-ATCACCGAGA---GTGC-AGAGGGT-TAATCACC----CAGGA--AGAAC-AAACAT--ACA--TAGGGAAT---TTTAGA-AATTTAAATTTTTTC-ATCAT-ACAATGGCA----T-------TTTGTCGG-CT--TGA---------AA----TTCCTCTTT--AT-AGGGCC--------A-TA-GCTGC-TCTGG-GGCAA-GGAA-GTTGCCA--TG------CA-ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGTCG-CCTGTTTGTTCCATTCAAAAATAAGGTTTCTAAAGAATCCACATC-ACTG-AGCACCAAACa
gi|5 : tcatcaaataatgacaacgttCCAAATAG----GGAATATAGTGAGGTCAA---GATCACAGGGAAGGTCAAGGTCAGAAAATAAATCCATAGTTGAGTAG------C-------TATAT--ATGTAACCACTAATATGTCCAAGTGTAAAAGATT-TCATAAAAATATTGCTTTCAAACCGAGCTTGACAAAAAAATATGGAAAAG-T-GCAGTCA----AGGTCA-AAAGAA----ATGg
gi|6 : gttgataatgaggatgtcctgtagcggaatcagttcattgcaaagagccagtagatagtagaaccctaaatctttgttggtatttttgtttgttacttgttgaaatcaaggtgaaaatttaacaaatctttttaaaagccagtgtttcacattgatgaatttctttttaatcactttcaattC-ATCAAATATAGAATAG-T-GAACTCATTGAAGGTCA-AAGGAA----ATGTCTTGGTCAAA--TATTGATGCAGT-TG-AATAGA--TGTCACC-AAT----ATGTATCAGC-ATACAAAGTATGATATAA-ATATCTTCTGGATCAATAG----A---G---TCTTTAAAACTGAGCTA---AATGC-AAAGTGTAAACAAAAAAAAGG-AC----AG--A---CAG-A------------A-------GGACATGGG-----GT-A--GAAACCTCA--AG-GATGA-AAGGACAGAAG-ATAG-------ACAT----------------G-----ACA---TATT--CATGGCAGGGCA-TGAAAAgacatattgtaatgaacattgtaattcatcaggaccctggaatttgctacagatgtattaacag
gi|7 : TACCAAATAGCTAGGGAACA--GTGAGATCAA---GGTCACAGGGAAGGTCAAGGTCAAAAAATAAGGTCACAGTTGAATAGCTACCAC-------TATATCAGTGTA------CGAGTTTTCA--TG-AAAa
gi|8 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgtgaaAAACAAACTAAAC-ACTAAATCCAGAAAAG-T-GAGGTCA----AGGTCATATGGAAAGTGATGTAAAG----AAA-TG-TGGTGTAGA-AGTCACAAACTTATCA---AAA----ATGTATCTGT-GTATGAAGGATGATGAAA-GCACCTT---------TAA----------TGTACTGAAAATTGAGCTA---AATAA-AAAG--------------------------------CAG-A------------C----------------------------AG-----A--AG-G-TGG-A------------------AA--ATACTACTATAT-GCCCCT-G-----CCA---TTTA--CATGACt
gi|9 : AGCTA---A-CGC-AAAGTGT-------------GGAC----GA--AA--CAGGA------------C-------AGA-----C--------A--GAC-----A--GT-TACAG-AA-GACGG-AC-TGAGGTCAATTACAC--CTATATTGCCCCG-G-----CCA---TATT--CATGGCGGAATA-TAGAAAT
blockSeqs : CTAG TA . TGCT AC ATATCATTAATA CG ACCACT A AG T . A AAAT C C A C G T TTGA T AGTG C A AAC T A GC CT GA G AAAG C T T CTGGATCAATAGAG T TAA C AAACAAAAAAAAGGACAGACAGAAGGACATGGGGTAGAAACCTC CA A C AGGACAGAAGATAG TT C CTATATTCCTCAGTCTGC TAG AT C G GACCACATTTTTTTCATTTCTCTCTATTCATATGTGTGACATATATGTGAAGAGTATCAA AC A A CT CC A . GCATAA C T C AA CCAGC T A GCA C A C GG A C ACCTA A A C G CT TG C TT A T T T CAGG TT G G . C C CT T A AT . G . G AT . ATGGCGATT G AACAAGGCGGTCAAAATC G T CTAT GTAGGATCAT . GGGTGCAAATGGCAGTGCACTCTCATATTGTGTTCCGATGGAGCGGTCAGACTCATCGTGCTTCT G AAGTTA G T CC C A C GC C AT A T T CT . AT T C CCT A A TC G T C ACGATAA A . A C ACTTAT G AAA A AC T C CTG C T . TT AT T T TC C G AA A CCA G G A G . . TA A GGCATC C T A T . TT A T TCA AGGA AA TG G
blockSeqs : . . . ATCC GT CTACCAC CA . T . . A . A . . . . . G A AT T . GG . GT . . C T . TAAGTATAGTTC G . . CGACGGGGACAGATCGCGGAGTGAACGGAAGGAGAC . . . AGACGGACTGAGGT . A ACTATATAGCCCGCG . . T . TTTATTCACAGTAACATAGAAAGTGAATTAAAAGCGCACC AC . A . CC . . CATAA C T . . CAC . . AG T A G C A . CACT . . . G T G . T A T . T CA TT G G . . C C A . . . G . . AT . ATGGCAT . TAAGGGTCAAA C . CTC GAGCAT . CAGGTGAAATGGCCCAGTGCCTATATTGTCCATGGGCTCA . . G . C C . C GC T T A T T G . T . . . . A . G . . ACGATA . . . C CACTA G A A . . . G C . . T T . . . C G . . A . . A . . . A A GTCAT . . . . . . A . C
blockSeqs : . . . GGTC AT C . . A . . . A . . . . . C A GT C . AT . GT . . . T . TAAATATATTT T . . GACGGAAGGATAGACCCGTGATGGACGAAAGGAGAC . . . AGAAGACGATGA . C TATAATATGCCCGCG . . A . ATTTATTCATGTAACACTAGAAGTAGAATAAGAGCACC AA . G . . . . CCCTA A . . . CAT . . A . . T . . . CT . . . . . . . T . . . . AG T . . . . A C . . . . G . . A . ATGCTT . TGAAA T . AT ATA . GGCAAGGAAGTTGCCATGCAATTCTCCCCAATCA . . . . C . . . CA C
blockSeqs : C . . . . . T A AT C . TC . GT . . . A . GTATAGTCT G . . GACGGAGGACAGATCGGGGTGAACGAGAGAG . . . AGACAGACATAG . C TACTATATGCCCCTG . . C .
blockSeqs : . . . . . C . G T . A . AT . . . A . TAATG . . . GGACGAAACAGGACAGACAGAC . . . AGAAGACGAG . T CTATATTGCCCCGG . . C .
blockSeqs : . . . . . A . T . . . . . . . . T . T . . . CAGACAG . . . CATGA . C G . . T .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . .
blockSeqs : A .
blockSeqCons : GT* TAAATATAGTTT************
originalCons : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAA-TATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT---------TAA----A---GTTTTCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
finalCons : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAA----ATGTCAAGGTCAAAGT-ATTGATGCAGT-TGGNATAGA--TGTCACC-AAT----ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTTTAAATATAGTTT------------TCTTTGAAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATGTTTAAATCCAAGTGATATAACAAGTCTTTTTGAAAACTTTCTCATGTGTAGACGATTTTCTTTACGAGTCACTTTGAATACCAAATAAAGAA
Unaligned ( gi|13 ): TTAAAGGTCATTATCTTTGTGAGATTGGACCACTTTTGTGAATAGTTCAATTGTCCATGCCTCAAGAGGCTCGATTAACTGTCTTCTAGTCTA
Unaligned ( gi|17 ): TTTATAGGGCCAGAGCTGCTCTGGGGCAGGGAAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 11 111 1111 77777777777777 222222 11 1 1 2222 1 1111 2222 11 333333333 1 44444444444444444 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111 2222222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 11 11 1 1 22222222 1 11 22222 1 1 1111 22 1 1 1111111 1 1 1 11 11 1 1 1 1 22222 111 2222 1 1 33333 222 1 22 11 111 1 11 1 777777777777777777 1 44444444444444444444 1 11111 6666666666666 1 99999999999999999999999999999999999999999999999999999999999999999999999 1 222222 1 1 1 11 33 1 11 1 222 111 22 1 1111111 11 1 22222222 111 11 1 1 111 1 1 11 22 1 1 11 11 1 222 1 11 222 111 2222222 1 1 1 222 11 111
lowQualScore : 1111 33 777 3333 0 11 55555555555555 66 888888 1 33 0 5 1 4444 1 1 0 0 1 5 5 2222 5 1 5 3 5555 0 0 6 0 5 22 0 0 5 000000000 0 1 4 11111111111111111 4 5 888 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 5 5 22222222222222222 66 1 6666666666666666666666 888 66 1 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0 2 33 77 0 0 11111111 1 3 0 33 00000 0 0 4444 6 9 1 33 5 0 8888888 9 0 0 2 33 22 0 66 5 3 0 5 22222 0 444 2 0000 0 0 1 44444 333 0 55 33 2 0 777 0 0 11 0 000000000000000000 0 22222222222222222222 1 0 77777 0000000000000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 888888 2 0 55 8 0 5 22 6 44 7 7 7 11 0 3 44 3 6 555 7 999 55 6 7 3 4444444 7 88 3 6 44444444 6 333 7 88 2 3 222 6 3 3 44 00 3 3 88 6 6 88 3 777 6 6 7 3 88 333 777 7 6666666 3 3 7 3 333 88 7 7 999 9999 22 22 1
lowQualScore : .... .. ... .... . .. .............. .. ...... . .. . . . .... . . . . . . . .... . . . . .... . . . . . .. . . . ......... . . . ................. . . ... . .................................................................................. .. . . ................. .. . ...................... ... .. . . .......................................................................................... .. . . .. .. . . ........ . . . .. ..... . . .... . . . .. . . ....... . . . . .. .. . .. . . . . ..... . ... . .... . . . ..... ... . .. .. . . ... . . .. . .................. . .................... . . ..... ............. . . ....................................................................... . ...... . . .. . . . .. . .. . . . .. . . .. . . ... . ... .. . . . ....... . .. . . ........ . ... . .. . . ... . . . .. .. . . .. . . .. . ... . . . . .. ... ... . ....... . . . . ... .. . . ... .... .. .. .
lowQualScore : 2222 88 555 8888 8 55 55555555555555 88 888888 0 88 0 0 0 5555 0 0 0 2 0 7 7 1111 7 4 3 0 0000 1 1 5 2 0 11 4 2 0 666666666 0 0 4 22222222222222222 9 7 888 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 99 0 0 66666666666666666 99 4 8888888888888888888888 888 99 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 0 0 88 55 0 0 00000000 0 2 0 88 88888 0 0 8888 5 8 0 88 5 0 5555555 0 0 0 5 22 55 0 55 5 2 0 5 00000 8 888 5 0000 0 0 0 22222 555 0 55 88 5 2 555 2 0 55 0 888888888888888888 0 55555555555555555555 0 0 88888 2222222222222 0 2 22222222222222222222222222222222222222222222222222222222222222222222222 0 888888 5 0 00 8 0 0 00 5 33 3 3 3 77 7 3 77 3 7 000 3 000 33 7 3 3 3333333 3 33 3 7 00000000 7 777 3 33 0 3 333 7 3 3 00 77 3 3 33 7 7 33 3 333 7 7 3 3 33 333 777 3 7777777 3 3 3 3 333 33 3 3 000 2222 00 00 0
consensus : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAAATGTCGAGGTCAAAG-TATTGATGCAGT-TGGNATAGATGTCACC-AAT---------ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT-----TAAATATAGTTTTCTTTG-AAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
Reference ( family-2158 ) : NNNTACCAAATAG----GGAATA--GTGAGGTCAA---GGTCACAGGGAAGGTCAAGGTCAGAAAATAANGCCATAGTTGAATAG-TAC--C-------TGTATCGGTGTA------AGNGTTTTCA--TG-AAAATATTGTCATNGAAATGTTGCTTTNAAANCGAGCTAAAC-ACCAAATNCGGAAAAG-T-GAGGTCA----AGGTCA-AAGGAAATGTCAAGGTCAAAG-TATTGATGCAGT-TGGNATAGATGTCACC-AAT---------ATGTATCAGC-GCGTAAAGTNTGATAAAA-ATATCTT-----TAAATATAGTTTTCTTTG-AAACTGAGCTA---AACGC-AAAGTGT-------------G-AC----GG--A---CAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-GCCCCG-G-----CCA---TATT--CATGGCGGGGCA-TGAAAATGAC----CAC---TTTTTTATTT-C-------------ATGTGACAT----A---------TT-----C-------GCAT-AA-------GTAAACAGA-TGCGCGCCATTATCC--TATAATACCCAG-CAAA-TG-CC-T-A-TCCANTTTCATTTGTTCT-AT--TTTGGTTC--GCCTATTGTGACG-AGT-AG--A-GCGTCACGTTCATATGNA--TCTTTACAAACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCATACGTTTG-TGATATATCTTTC--GG-AGATTG-T-ATCACCGGGG---GTGC-AGAGGGT-TNATCACCCT--CAGGT--AGAAC-AAACATA-ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCGNTCAT-ACA-----A----T-------TTTGTCGG-CT--TAAGGC-G-TC-AA----TNCC-CTCA--AT-AGGGCCG-------A-TA-GCTGC-TCTGGCGGCGC-GGAATGTCGCCA-GTGC----CCATATTNT---CCN----------CGGGCTCA----------GTAC-ATTTTAT------CAGCCG-CCTGTTTGTTCCATTCAAAAATATGGTTTCTATAGAATCCACATC-GCTGCAGNNCCAAACCCCGGAGN-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTG--TTCAAAACAGCGCGCGTCGC-ATTGTATCAT-AGATTTTCCCCATCTCTCCC--TGAATGC--GTAC-CTTGGAGTA-TGTCTAACGATA-TCGTAA--ATA-CACACGGTG---CAT--TATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAA--CCGTTCCTTCTAC-GTCTGCGCTGCATC-CAGT-AA-CGGATGAAC-TTTCCG-TTACAAT-GACGT--CATTACCAGTGGACCGACC--AAC-TGAAG-CAAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-G-CAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--AAAAAAACCAAATTAATGAATCTGTC--GAATAGGNGAGCCNNATNNGCCAATTCNACAA
gi|1 : TACCAAATAG----GAAATA--GGGAGATCAATTGGGTCAACGGGAAGGTCATGGTAAAAAAATAA-----------------TA-----------TGTATCAGTGTA------AGCATTTTCA--TA-CAAATATTGTCATTG----GTTGCTTTGAAAGTGAGCTAAAC-ACCGAATTTGGGAAAG-T-GAGGTCA----AGGTCA-AAGGAAATGCTAAGGTCAAAACTATTGATGCAGT-TGGGATAGATGTTACC-AAT---------ATCTATCAGC-ACGTGGAGTTTGATAAAG-ATATATT-----GAAA----GGTTTCTTTG-AAACTGAGCTA---AACAC-AGCGTGT-------------G-AC----GG--A---TAG-A------------C-------GGA-----G-----GA-A--GAG-----A--AG-GATGG-AA-GACAG-AC-ATAG--CAA--ACACTACTATAT-ACTCCG-G-----CCA---TACT--CATGGCGAGGAA-TGAAAATGACCTTACAC---TTTTTTATTT-C-------------A-GTGACAT----A---------CT-----C-------GCAT-AA-------GTAG--AGA-TGCACACCATTGTCC--TATAATA--CAG-CAAATTA-CC-T-T-TCCAATTTCATTTGTTCT-AT--TTTGGTT------TATTATGACG-AGT-AG--A-GTGTCACGTTCATTTTAC--TTTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACGTCA-TCA-GCGGACGGCC-TTTTCCGA-GGGTCGTG-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AGCAGAGGG-C-AGCGCGGAGGCATGTGCAAGAAGGG-GGAGCACTCTTACAGGTAAAGAAC-AAACATA-ACATTTC-AGTATGGGTTCTCA-AAGGTCAATTTTTGTGAGCATGACA-----AG---T-------TTTGGCAG-CT--GACGGCTG-GC-AA----TGCC-CTCA--AG-AGGGCCT-------ATTA-GCTGCTTCTTGTCGTACTAGAATATCACCATGTA---------ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGCTG-CTTGTTTGTTCCATTCAACAAAATGGTTTCTATAGAATCCAAATC-GCTG-AGCACCAAA---CGGAAG-TCTTCTGTT----AGGAATTGCTG-TG-TTAATTTG--TTCAAAAAAAGATGCGTCGCAATTGTA-CAT-AGATTTTCCCAATCTCTCCC--TGAATGCTAGTAC-TTT-GAGTA-TGTCTA--------CGTAATTATA-CACA-GGTG---CAT--TCTGGTC-GACAA--------AGTATTGTAGGC-GGGGTATTCTTTCAA--CCGTTCTTTTTAC-GTCT-CG-TGCATC-CAGTAAA-CGGATGAAC--TTCCG-TTACAAT-GACGT--CATTA-CAGT-GACCGACC--AAC-TGAAG-C-AAACCGATGGTTGG-AAGAAGTTCTTCA-TGAGATCTATTCCCCGCTAAAGTAGCAATAATGGGTGACA-AGTCAT------TTT-T-CA--CATTCCTTAATTTTTTGACAA-CCAC-GGGAAATGTCTTCCAGTGTGAGAGCAAAACC-TGTAAAAA--AAAAAAACC-AACCAATGAATGTGTT--GAAT---CGAGCCCTATATGTCAATTCTACAA
gi|10 : aacCAAATCCAGAAAAG-T-GAGGTCA----TGGTCA-TACGCAGGGTCAAGGTTAA---TATTAA---AATATGGCATAG-TGAC-CC-AGTAAAG-----ATGTATCTGT-GTATAAAGTTTGATGAAA-GCATCCC-----TAA
gi|11 : CAAATAG----GGAATG--GTAAGGTCAA---GGTCACAAAGAAGGTCAAGATCAGAAAATAATGCTATAGTTGAACAGATAT--CATTAATATGTATCGATGTA------AGAGTTTTCA--CG-AAAGT
gi|14 : GGAAAAGGT-GAGGTCA----AGGTCA-AAGGAAATGTGAAGGTCAA--------------------ATAGATGTCGCC-AAT---------ATGTATCAGG-GTGTAAGGTTTGAGAAAC-ATATg
gi|15 : ----GG--A---CAG-A------------C-------AGA-----A-----GG-A--GAG-----A--AG--ATGG-A---------C-ATGA--CAA--ACA---CTATAT-TCCTCA-GTCTGCCCA---TATT--CATGGCGATGCA-TAAAAAT
gi|16 : AGTTTGATAAAA-ATATCTT-----T----------------G-AAAGTGAGCTA---AACGC-TTCGTGT-------------G-ACA---GG--A---C-G-A------------C-------AGAT----G-----GA-
gi|2 : cTCGAGGTCACAG--ATTGATGTAGT-TG------AT---ACC-AAT---------ATGTATCAGCCACGTAAAGTATGATAAAATATATATT--------GTATAGTCTTCTTTG-AATCTGAGCTA---AACAG-AAAGTGTC------------G-AC----GGGGA---CAG-ATCGCGGAGTGAAC-------GGA-----A-----GG-A--GAC-----A--AG-GATGGCAA-GA-AG-AC-G-AG--CAC--AAAC-ACTATAT-AGCCCGCG-----CCA---TGTTATCATGGCAGAGTAGTGAAAAT----------------TTTATTCAC-------------A-GTAACAT----AGAAAGTGAATTAAAAGC-------GCAC-C--------GTAAACAGAATGCGCACCATTATTCCTTATAATACCCAAATAAA-TG-GCAT-AATCTACTTTCATTTGTTCTCAT--TTGTGTTC--ACCTATTGTGACGTAAT-AAGCA-GCGTCACGTTCATATGCA--TCTTTACAAACGTCACGTAAACACCCGGATGTAAA--CACT-TGCAACAC-TCAATCACGCG-ACGGCCCTTTTCCGATGGGTTGTGCGTTCT-GCATACGTT-G-TGATATATCTTTC--CA-AGATTG-TTATCACCGGAG----TGC-AGAGGGT-TCATCACCCT---AGGT--AGAAC-AAGCACATACA--TCGGGCAT---TTTCCAGAATTTCAACTTTTTCATTCAT-ACA-----A----TGGCGATTTTTGTCGGGCTAACAAGGC-GGTC-AAAATCCGCT-CTCA--CTCAGGAGCGTAGGATCA-T--GCTGC-TCTAGGGGTGC-A-AATG--GC-A-GTGCACTCTCATATTGTGTTCCGATGGAGCGGTCAGACTCATCGTGCTTCTATAC-ATTTTAC------TA-CCGTCCTGTTTGTTC-ATTCAAAAATATGGTTTCTATAGAATCCACATCAGCTGCAGGCCCAAACCCCGGAGATCCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGG-TTCAAAACAGCGCGCGTCAC-ATTGT-TCATTAGATTTTCCCCATCTCTCC---TGA-TGC--ATAC--TTGGAG-A-TGTCTAACGATAATCGTAA--ATAACACCCGGTGACTTAT--CATGGTCGGACAAAAATAAGCAATATTGTAGGCAGGGGATCTCCTTCAA--CCGTTTCTTCTACCGT--GCGCTGCATCTCAGT-AA-TGGATGGACATTTCCG-TTACAATTGACGTTCCATTACCAGTGGACCGACC--AACATGAAG--AAAACAGATGGGTGGAAAGAAGTTCTTCA-TGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCA-A-CCATACCTGCTAT-GTCAT-CCTTCCTTAATTTTTTGACAA-CCAC-GGGGAATGCCTTCCAGTGTGAACGCCAAACC-TG---AAA--ATAAAAACCAAATTAATGAATCTGTC--AGATAG
gi|3 : aaaAG-TATTGATGTAGT-TGGGAAATA----ACCGAAT---------ATGTATCAGCCACGTAAAGTATGATAAAA--TA-CTA-----TAAGTATAGTTCTCTT-G-AATCTGAGGCATAAAACGCCAAAGTGT-------------G-AC----GG--AGGACAG-AT-----------C-------GGG-----GTGAACGAGA--GAG-----ACAAGAGATGG-AA-GA-AG-ACGATGA--CAA--ACACTATAATAT-GCCCGC-G-----CCATAGTATT--CATGGCGAGGAG-TGAAAATA---------------TTTA-TT-C-------------ATGTAACACTAGAA---------GT-----A-------GAAT-AAGAGCACCGTAAACAGA-TGCGCACCATTATTC--TATAATACCCAA-TAAA-TG-CA-TAA-TCTACTTTCATTTGT--T-AT--TTTGGTTCCAGCCTATTGTGACG-AATAAG--AGGCGTCA-GTTCATATGGAGGTCTTTACAAACGTCACGTAAA-ACCCGGATGTAAAACC--TATGCAACAC-TCA-TCA-GCGGACGGCC--TTTCCGA--TGTTGTG-GTTC-TGCATACGTTTGTTGATATATCTTTCCAGG-AGATTGTT-ATCACC-GGA---GTGC-AGAGGGTCTCATCACC----CAGG---AGAACAAAACAT--ACA--TCGGGCAT---TTTCCA-AATTTCAACTTTTTCATTCAT-ACA-----ATGCTT-------TTTGTCGG-CT--TAAGG--G-TCAAA----TCCC-CTTACTAT-AGGGCAG-------AGCATGCTGC-TCTGGCAG-GT-GAAATGGC-CCA-GTGC----CTATATTGT---CCA----------TGGGCTCA----------ACACGGTTCTATAAGTTACAGCCG-CCTGTTTGTT-CATTCAAAAATATGGTTTCTATAGAATCCA-ATC-ACTGCAGGCCCAAATCCCGGAGT-CCTTCTGTTATCCAGGAATTGCTGTTGTTTAATTTGCTTTCAAAACAGCGCGCGTCAC-ATTGTATCAT-AGATTTT-CCCATCTCTCCCCTTGAATGC--ATACTCTTGGAGTACTGTCTAACGATA-TCGT-A--ATA-CACACGGTG---CACTATATGGTCGGAC--AAATAAGCAATATTGTAGGCAGGGGAATTCTTTCAAACCCGTT-CTTCTAC-ATCTGCGCTGCATC-CAGT-AATTGGATGAAC-TTTCCGTTTACAAT-GACGT--CATTACCAGTGGACCGACCAAAAC-TGAAGCCAAAACAGAT-GGT-GAAAGAAGTTCTTCAGTGAGATCTATTCCC--CTAAAGTAGCCATCTT---TTCCATA-CCATACCTGCTATGG-CATCCCTTCCTTAATTTTTGTACAACCCACTGGGGAATGCCTTCCAGTGTG-ACGCCAAACCTTG---AAATTAATAAAACCAAATTAA-GAATCTGTTCAGAATAGGAGAGTCAAATTGGCCAATTCGACAAag
gi|4 : acGAATAG-TTGAGGTCA----AGGACA-AAGTCAATGATAAGGTGAAAAACATTGATGCAAT-TGATATAGATGTCACC-AAT---------ATGTATCATC-ACGTAGAGTTTGATCAAC-ATATCTT-----TAAATATA-TTTTCTTGG-AAACTGAGCTA---AACAC-AAAGTAT-------------G-ACGGAAGG--A---TAG-A------------CCCGTGATGGA-----C-----GA-AAGGAGAC---A--AA-GATGG-AA-GACAG-AC-ATAG--CAA--A-AC-----------------------------------ATGGCGGGACA-TGAAAATGAC----CACATTTTTTTCATTT-CTCTCTATTCATATGTGTGACAT----A---------TA-----TGTGAAGAGTATCAA-------GTAAAAAGA-TGCGTGCCATTATCC--TATAATA--CAG-CAAA-TGCCC-T-A-CCCAATTCCATTAATTCT-ATAATTTGGTTC--ATCTATTGTGACG-AGT-AG--A-GTGTCATGTTCAT-TGTAC-TCTTTAC-AACGTCACGTAAA-ACCCGGATGTAAA--C--T-TGCAACACATCA-TCA-GCGGATGGCC-TTTTCTGA-GGGTCATA-GTTCTTGCAT-CGTTTG-TGA-ATATCTTTC--AG-AGACTG-T-ATCACCGAGA---GTGC-AGAGGGT-TAATCACC----CAGGA--AGAAC-AAACAT--ACA--TAGGGAAT---TTTAGA-AATTTAAATTTTTTC-ATCAT-ACAATGGCA----T-------TTTGTCGG-CT--TGA---------AA----TTCCTCTTT--AT-AGGGCC--------A-TA-GCTGC-TCTGG-GGCAA-GGAA-GTTGCCA--TG------CA-ATTCT---CCC----------CAA--TCA----------GTAC-ATTTTAT------CAGTCG-CCTGTTTGTTCCATTCAAAAATAAGGTTTCTAAAGAATCCACATC-ACTG-AGCACCAAACa
gi|5 : tcatcaaataatgacaacgttCCAAATAG----GGAATATAGTGAGGTCAA---GATCACAGGGAAGGTCAAGGTCAGAAAATAAATCCATAGTTGAGTAG------C-------TATAT--ATGTAACCACTAATATGTCCAAGTGTAAAAGATT-TCATAAAAATATTGCTTTCAAACCGAGCTTGACAAAAAAATATGGAAAAG-T-GCAGTCA----AGGTCA-AAAGAAATGg
gi|6 : gttgataatgaggatgtcctgtagcggaatcagttcattgcaaagagccagtagatagtagaaccctaaatctttgttggtatttttgtttgttacttgttgaaatcaaggtgaaaatttaacaaatctttttaaaagccagtgtttcacattgatgaatttctttttaatcactttcaattC-ATCAAATATAGAATAG-T-GAACTCATTGAAGGTCA-AAGGAAATGTCTTGGTCAAA--TATTGATGCAGT-TG-AATAGATGTCACC-AAT---------ATGTATCAGC-ATACAAAGTATGATATAA-ATATCTTCTGGATCAATAGAG---TCTTTA-AAACTGAGCTA---AATGC-AAAGTGTAAACAAAAAAAAGG-AC----AG--A---CAG-A------------A-------GGACATGGG-----GT-A--GAAACCTCA--AG-GATGA-AAGGACAGAAG-ATAG-------ACAT----------------G-----ACA---TATT--CATGGCAGGGCA-TGAAAAgacatattgtaatgaacattgtaattcatcaggaccctggaatttgctacagatgtattaacag
gi|7 : TACCAAATAGCTAGGGAACA--GTGAGATCAA---GGTCACAGGGAAGGTCAAGGTCAAAAAATAAGGTCACAGTTGAATAGCTACCAC-------TATATCAGTGTA------CGAGTTTTCA--TG-AAAa
gi|8 : tctaaagtagaaccataattcaatggtcgttttttaacatcttaattttctaagtgaaaacaggcttttttgaaagctgtcttgtacaattgaaattattcctgaatcactgtgaaAAACAAACTAAAC-ACTAAATCCAGAAAAG-T-GAGGTCA----AGGTCATATGGAAA-GT-GATGT-AAAG-AA---ATG-----TGGTGTAGAAGTCACA-AACTTATCAAAAATGTATCTGT-GTATGAAGGATGATGAAA-GCACCTT-----T-AATGTA-------CTGAAAATTGAGCTA---AATAA-AAAG--------------------------------CAG-A------------C----------------------------AG-----A--AG-G-TGG-A------------------AA--ATACTACTATAT-GCCCCT-G-----CCA---TTTA--CATGACt
gi|9 : AGCTA---A-CGC-AAAGTGT-------------GGAC----GA--AA--CAGGA------------C-------AGA-----C--------A--GAC-----A--GT-TACAG-AA-GACGG-AC-TGAGGTCAATTACAC--CTATATTGCCCCG-G-----CCA---TATT--CATGGCGGAATA-TAGAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATGTTTAAATCCAAGTGATATAACAAGTCTTTTTGAAAACTTTCTCATGTGTAGACGATTTTCTTTACGAGTCACTTTGAATACCAAATAAAGAA
Unaligned ( gi|13 ): TTAAAGGTCATTATCTTTGTGAGATTGGACCACTTTTGTGAATAGTTCAATTGTCCATGCCTCAAGAGGCTCGATTAACTGTCTTCTAGTCTA
Unaligned ( gi|17 ): TTTATAGGGCCAGAGCTGCTCTGGGGCAGGGAAAT