lowQualScore : 11111111111111111111
lowQualScore : 1 1 22222 111 1 2222 333 11 333 222222222 1 444444444 11 1111111 22222222 1 2 222222 111 333 3333333333333 11 111 1 1 22 1111111111 1 22222222222222 333333333333333333333333333333333333333333333333333333333333333 11 33333333333 33333333333333 11 22 2222222222222 33 11 1 111 2 111 111 11 1 1 2 66666666666666666666 2 1 4444444444444 44444444444 1 111 22 1 1 11 222 1 44444444 1 1 1 11111 1 11 22 1 11 3333333 1
lowQualScore : 3 2 11111 777 0 3333 111 3 77 33 55 000 444444444 1 0 222222222 33 2 66 1 4444444 6 99999999 99 6 4 444444 66 666 6 111 2222222222222 999 55 6 6 6 99 2 333 0 3 6 77 8888888888 0 6 5 0 5 5 88888888888888 111111111111111111111111111111111111111111111111111111111111111 5 99999999 5 4 22 33333333333 2 77777777777777 3 7777 3 77 1 8 44 22 6 3 8 3 4 777 8888888888888 4 77 44 77 8 8 33 3 3 88 66 0 5 5 5 99 111 0 2 444 444 8 99 7 5 6 3 888 0 22222222222222222222 0 5 4444444444444 3 3 6 77777777777 2 0 0 555 44 2 33 2 4 0 2 0 33 0 777 9 00000000 0 6 8 8 6 55555 0 5 1 11 44 8 6 11 5555555 1
lowQualScore : . . ..... ... . .... ... . .. .. .. ... ......... . . ......... .. . .. . ....... . ........ .. . . ...... .. ... . ... ............. ... .. . . . .. . ... . . . .. .......... . . . . . . .............. ............................................................... . ........ . . .. ........... . .............. . .... . .. . . .. .. . . . . . ... ............. . .. .. .. . . .. . . .. .. . . . . .. ... . . ... ... . .. . . . . ... . .................... . . ............. . . . ........... . . . ... .. . .. . . . . . .. . ... . ........ . . . . . ..... . . . .. .. . . .. ....... .
lowQualScore : 3 0 55555 555 0 8888 222 2 99 66 66 666 444444444 4 4 666666666 66 0 99 0 3333333 7 55555555 77 5 2 888888 33 888 7 777 7777777777777 888 88 7 7 7 22 2 222 7 3 7 55 7777777777 4 0 7 1 7 0 44444444444444 444444444444444444444444444444444444444444444444444444444444444 7 11111111 7 0 33 77777777777 1 66666666666666 3 1111 3 88 3 7 66 00 7 3 9 2 0 000 6666666666666 0 55 88 44 0 0 66 6 6 77 11 1 7 7 7 22 777 0 8 000 000 0 00 3 0 7 3 000 0 55555555555555555555 0 0 7777777777777 2 5 5 00000000000 5 0 8 000 00 2 88 5 5 0 5 0 88 2 000 2 55555555 0 0 0 0 0 22222 8 4 4 00 88 0 0 00 0000000 6
consensus : AGTCT-TAGCTCAAAAAGCGCC--GAAGCGC---GGT-AG--G-CTC-G-AAAATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTG---CG----CTT-TCA-T---A---AT--AACTCTTT--TACTT---NA--AA-TATA-TTGTGAATAAN-ATGTAGAA-CAAAAGTGA--TACGGTTTTT--NGAC-GAG--CTTTTCT----AT---GACATC--GAGAAAAA--GG-G-GCTGGTCC--TTTAAAN--AGGGGTC-T-AGAAGGG--CTGG----AAGTNAAAATCAGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ANAAGAAAATG-TCGA-TC--TTAAC-A-A-CGTCTAAT-CTGTG-CA-----T----TANCAAATTTTT-GGGTCA-TA-ATG-TT----A-CG-TAATAAGG--GA-TTTTAGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-CTC--G---TA-TAT-CTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---GC-A--TTTTCATTTCTT-GCTAAAT-GCCNNNTATAGGACAGAAACGCGGTCGGCCCCTAAAAGTTCCTCTCTTTGATATCCTCAAAACGGATCAAA-GAT-TT-TCCGAATACTTGTAGAACAAAACA--------T--TTTTGA-AACG--ACGAGACCTTT-CTTGTGATACC-AANA-AAA--GGGGCTGGCCCCT-CTAAATTAGGG-CCAGAAAGGG---T--NAAAGTCTTTTATAACAT-ATCTT-TTTACCT---G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA--CTGTCAATCTG-A----CAATTCCAATC
Reference ( gi|3 ) : AGTCT-TAGCTCAAAAAGCATC--GAAGCGC---GGT-AG--G-CTC---AAAATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTA---TG----TTT-TCA-T---G---AT--AACTCCTT--TACTT---CA--AA-TATAATTGTGGATAAA-ATGTTGAATCAAAAGTGG--TGTGGTTTTT--TGAC-GA---CTTTTAT----AT---G-CATC--GAGAAAAA--GG-G-GCTGGTCC--TTTGAAA--AGGGATC-T-AGA--GG--CTAG----AAGTAAAAATCAGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAAAATG-TTGA-TC--TTAAC-A-A-CGTCTAAT-CTGTA-CA-----T----TAACAAATTTTTCGGGTCA-TAAATG-TT----A-CT-TAATAAAG--GAATTTTAGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-CTT--G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---GC-A--TTTTCATTTCTTCGCTAAAT-GCCGGTTA-AGGA--------------------AAAAGTTCCTCTCTTT-ATATCCTCAAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACA--------T--TTTTGA-AATG--ACAAGATCTT--CTTGTAATACC-AACA-AAA--GGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGG----T--GAAAGTCTTTTA-AACAT-ATCTT-TTT-CCT---G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA--CTGTCAATCT--A----CAATTCTAATC
gi|2 : AGTCT-TAGCTCAAAAAGCATC--GAAGCGC---GGT-AG--G-CTC---AAAATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTA---TG----TTT-TCA-T---G---AT--AACTCCTT--TACTT---CA--AA-TATAATTGTGGATAAA-ATGTTGAATCAAAAGTGG--TGTGGTTTTT--TGAC-GA---CTTTTAT----AT---G-CATC--GAGAAAAA--GG-G-GCTGGTCC--TTTGAAA--AGGGATC-T-AGA--GG--CTAG----AAGTAAAAATCAGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAAAATG-TTGA-TC--TTAAC-A-A-CGTCTAAT-CTGTA-CA-----T----TAACAAATTTTTCGGGTCA-TAAATG-TT----A-CT-TAATAAAG--GAATTTTAGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-CTT--G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---GC-A--TTTTCATTTCTTCGCTAAAT-GCCGGTTA-AGGA--------------------AAAAGTTCCTCTCTTT-ATATCCTCAAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACA--------T--TTTTGA-AATG--ACAAGATCTT--CTTGTAATACC-AACA-AAA--GGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGG----T--GAAAGTCTTTTA-AACAT-ATCTT-TTT-CCT---G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA--CTGTCAATCT--A----CAATTCTAATC
gi|1 : aGTCTCTAACGTAAAAAGCAGCCGGAAGCGCCGGGGTTAG--GTCTC---AAAG-CGAG--TTTCGAAAAAAGCGCCC--TATTTTTTGCA---CT----TTTATCAGC---A---ATA-AACTCTTT--TCCTG---AA--AA-TAT--TTGTGATTAAC-ATAT--AAACAAAA-TAA--TA-GATTTTT--AAAC-GAG--CTTTTTT----ATTTGA-CATC--AAAAAAAATTGA-G-GCT-GTCCCTTTTTAAATTAGGGGTCTT-AGA--GGGACTGA----AAGTCAAAAGCTCA-ATAT-TC-TTAAAA-CGGTA--ACTACAATTC--T--------GT-AATCCA---AG-CAT------AT-A-ATAATCTAATG-TTAA-------AAC-ACACCATCTCAT-TTGTC-CA-----CCCCATGAT-AGTTTTTTG---C--TACAT--TT----A-CG-TAA------------TTA--GGCC-AGAA--AAGTAAACTTT-TCGGG--A-CAC--A---TA-TAG-CTAG-AAAAGTAAGAG-ATA-TAAT--G-TAAGAGC-ATCCTATATAACAAAAAGTTG-CTTCAA--AATATCCCT-CTTCCTCTAAACGAATATGGC-AT-TTTTCAATTTTTGG--AAAT-
gi|5 : gattgaagttgtgcacctgggttttaagt-TAGCT-AAAAAGCGCG--AAAGCGC---GGT-AG--GGCTCGACAATATCGATCTTT--GGAAAAAGCGTC-GAT---TTTTTAA---TAGTCTTTT-TCA-T---ACGAAT--AAT--CTT--TA--T---CATGAA-TATA--TGTG-ATAAC-ATGTAGAAACAAAAGTGG--TGTAGTTTTT--GAAC-GAC--CTTTTAC----AT---GACATC--GAGAAAAAG-GG-G-GCTGGTCC--TTTGATA--AGGGCT--T-AGAGGGG--CTAG----AAGCAAAAATCAGATAT-TCTTGTTAAAC-CA-TA--A--AC-ATTT--T--------TA-A--TCA---AT-TAT------AG-ATACAAGAAAATGTTTGA-TC---TA---A-A-CG--TAAT-CTatacatattaaacgactccaaaggtagtatacgggacgtcccggcctctaaaattactcctgaataacccaaaaaaacgtgtaagaaatcttatccaacacttgtttaacaaaaatgctcttgaaactttcagacctttgtgccttatcaagggaaaggagttggccctttcaattaggggtcaaaaaggatcccaaaagtcttttaaaataatcttataccctactcaaattgttacaagcaaaatgtagctcttgacaactcgaat
gi|6 : gactgaagtattatacctattgagtctcaagctacAAAAAGC-CC--GGAGCGC---GGT-AGCGG-CTTCG-AAAATCGAG--AT--TCGAAAAGCGCCCGA---TTTTTTTG---CA----CTT-TTA-T---AGC-AT--AACTCTTT--TACCTGTGAA--AG-TATCTTTGT-AATAAC-ATATAGAA--AAAAATAAT-TACGCTTTTT--AGGC-GAG--CTTTTCT----TT---GACATCAAAAGAAAAA--GGAG-GCT-GTCC--TTTAAAT--TGGGGTC-TGAGAAGGG--CTGGGAACAAGTCAAAATC-GA-ATATCTT-TAAAACGG--TA--C--ACAATTTTGT--------CTAA--TCAAGTAT-TAT------AG---------TAATG-TTTA-AA--ATAAC-A-T-TCTTTTGT-CT-TG-CC-----C----TGATAGTTTTTT--GTTCA-C--ATGATT----A-C--TAATTAGG--GAG-TTTAGGGGCC-AGGG-AGTGTCAATTGTAT---GGAA-C----A---TA-TAG-CTAG-AAAA-GTAGAA-ATA-ATTT--G-AAAG-GC-AT--TATtataaaagggattttagggcagaacggtctatctttgacctcgtaatatctcgaaatcgaaaactttttgcaaagggttattgaacaaaagttcttttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|15 : gttttaagtgctctagacgtCGAG--TTC-GAAAA--GCGCCCGAT---TTTTTTG---CA----CTT-TTA-T---AGCAAT--AACTCTTT--T
gi|16 : GAG--TT--CGAAAAAGCGCCCGA---TTTTTTTG---CA----CTT-TTA-TAGCA---AT--AACTCTTT--T
gi|7 : --TC--GAAAAAAGCGCCCGAT-TTTTTTTTGCACTG----TTTATAG-C---A---ATCCAACTCTTT--TCCTG---AA--AAATATAGT----AATCAACATATAGAA-CAAAA-TAAATTACGGTTTTTAGGGGC-GAGGCCTTTTCT----TT---GACATC--AAGAAAAA--AG-GAGCTGGTCC--TTTAAAT--TAGGGTC-T-AGAAGGG--CTGA----AAG
gi|4 : gtCTCTTTGATATCT---CA--AA-AACGATCA-----AGA-ATGTAGAA-CAAAACAGT--TTTGACAATG--TGACAGA---CCTTTCTTGTGAT---A-CCT---AACAAAAA--GG-G-G-TGGCCC--CTTAATT--AGGG-TCAT-A-A--GG------------GT-----TCAAA-A-GTCTT-TTAAAC-A--TA--T---C-GTTT--TACCGTGGTCA-A--TCA---AT-TCTGTTGTAAGTG-ATAAGAA---G-CAGAGTCCGTCAATTG-A-CGCCCAATTCAATA-TAATTAGT----TATCAAATT----AGGTCACTC--TG-TTCAGTA-AT-TA-TAAGGTGGATTTTTAGGGGCC-AAAATCGGGCAAATCTT-T---G--A-CTC--GACATA-TAATCTCTTAAAA-TGACAA-ACA-ATTTA-G-AAAA-GC-AT--TATTGACA-AAAAGTTGTCTT-GAGTAAT---CAT-
gi|8 : ttgaaaagcgttattgaacaaaagttgcccgaaatcatgttctctctaaaatacaatttttcattcttgctaaattgccccgtataggacagaaacgcggtcggcccctaaaaatttct-ATATCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAAC-TG-TCAA-TC--T-GAC-A-A-TCTC-AAT-CTATGTCA-----T-----ATCAAATTT---AGGTCA-T---TG-TT----A-CG-TAATAG-G--GA---TTAGGGGCC-AAAA-CAGaatcttaacaagatgccattt
gi|9 : aattagggccagaaagggtcaaagtttttataac-ATATCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAAC-TG-TCAA-TC--T-GAC-A-A-TCTC-AAT-CTATGTCA-----T-----ATCAAATTT---AGGTCA-T---TG-TT----A-CG-TAATAG-G--GA---TTAGGGGCC-AAAA-CAGcaaatcttgaaactc
gi|12 : attagggccagaaagggtcaaagtttttataacGTA-CA-----T-----AACAAATTTT--GGGTCA-TA--TG-TT----A-TG-TAA-GGAG--GGATTTTAGGGACC-AGAA-CGGGTCTATCTT-T---G--ACCTC--G---TA-TAT-CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAA-GC-AT--Tcaaatcttgaaactcg
gi|5 : AAATGTTT--GATC--TAAACG-TA----ATCT-TATAAAAG--GGATTTTAGGG--C-AGAA-CGG-TCTATCTT-T---G--A-CCTC-G---TAATAT-CTCG-AAAT-CGA-AA-ACT-TTTT--GCAAAG-G--GT--TATTGAAC-AAAAGTT--CTT-
gi|10 : gactgaagtattatacctattgagtctcaagctactagctaaaaagcgcgaaagcgcggtagggctcgacaatatcgatctttggaaaaagcgtcgattttttaatagtctttttcatacgaataatctttatcatgaatatatgtgataacatgtagaaacaaaagtggtgtagtttttgaacgaccttttacatgacatcgagaaaaagggggctggtcctttgataagggcttagaggggctagaagcaaaaatcagatattcttgttaaaccataaacatttttaatcaattatagatacaagaGGTCA-TA--TG-CT----A-CGGTAATAAGG--GA-TTTT-GTGGCC--GAA-CGGGTCTATCTT-T---G--A-CCTCCG---TA-TAT-CTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---GCAA--TTTTttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|11 : GGTCA-TA--TG-CT----A-CGGTAATAAGG--GA-TTTT-GTGGCC--GAA-CGGGTCTATCTT-T---G--A-CCTCCG---TA-TAT-CTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---GC-A--ATTT
gi|13 : -TT----A-CG-TAATAAGG--GA-TTTTAGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-CTCG-G---TA-TAT-CTCG--AAA-CGACAACACATTTTT--G-AAAA-GC-
gi|14 : gt-TT----A-CG-TAATAAGG--GA-TTTTAGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-CTCG-G---TA-TAT-CTCG--AAA-CGACAACACATTTTT--G-AAAA-G
gi|4 : gtTT--G-AAAA-GC-GT--TATTGAAC-AAAAGTTG-CCC-GA--AAT---CATGTTCTCTCTAA---AAT---AC-AATTTTTCATT-CTT-GCTAAATTGCCCCGTATAGGACAGAAACGCGGTCGGCCCCTAAAAATTTCTCTCTTTGATATC-TCAAAAACGATCAA------------GAAT----GTAGAACAAAACA--------G--TTTTGACAATGTGACA-GACCTTT-CTTGTGATACCTAACA-AAA--AGGGGTGGCCCCT--TAA-TTAGGG-TCATAAGGG----TTCAAAAGTCTTTTA-AACAT-ATCGT-TTT-ACCGTGG-TCAATCAATTCTGTTGTAAGTGATAAGAAGC-AGAGTCCGTCAATTG--ACGCCCAATTC-AAT
gi|1 : AAAACGTGTAAGA-AATCTTATCC-AACACTTGTTTAACAAAA-A--------TGCTCTTGA-AACT--TTCAGACCTT--TGTGCCTTATC-AAGGGAAA--GGAGTTGGCCCTTTC--AATTAGGGGTCAAAAAGGATCCC--AAAAGTCTTTTA-AA-ATAATCTTATAC-CCT---ACTC---AAAT--TGTTAC----------AAGC-AAA--ATGTAGCTCTTGA----CAACTCGAATataattagttatcaaattaggtcactctgttcagtaattataaggtggatttttaggggccaaaatcgggcaaatctttgactcgacatataatctcttaaaatgacaaacaatttagaaaagcattattgacaaaaagttgtcttgagtaatcataatcttaacaagatgccattt
gi|7 : gattgaagttgtgcacctgggttttaagtgtctctaacgtaaaaagcagccggaagcgccggggttaggtctcaaagcgagtttcgaaaaaagcgccctattttttgcacttttatcagcaataaactcttttcctgaaaatatttgtgattaacatataaacaaaataatagatttttaaacgagcttttttatttgacatcaaaaaaaattgaggctgtccctttttaaattaggggtcttagagggactgaaagtcaaaagctcaatattcttaaaacggtaactacaattctgtaatccaagcatataataatctaatgttaaaacacaccatctcatttgtccaccccatgatagttttttgctacatttacgtaattaggccagaaaagtaaacttttcgggacacatatagctagaaaagtaagagatataatgtaagagcatcctatataacaaaaagttgcttcaaaatatccctcttcctctaaacgaatatggcatttttcaatttttggaaatatacatattaaacgactccaaaggtagtatacgggacgtcccggcctctaaaattactcctgaataacccaaaACATATAGAACAAAATAAATTACGGT--TTTT---AGGG--GCGAGGCCTTTTCTT-TGACATC-AAGA-AAAAAGGAGCTGGTCCTT--TAAATTAGGGTCTAGAAGGGC---T--GAAAG
gi|8 : gttcgaaaaaagcgcccgatttttttttgcactgtttatagcaatccaactcttttcctgaaaaatatagtaatcaAATTAGGG-CCAGAAAGGG---T--CAAAGT-TTTTATAACAT-ATCTT-TTTACCT---G-TCAAT-ATT--TGTTATAAGTG-TAAGAAGCAGAA--CTGTCAATCTG-A----CAATCTCAATC
gi|9 : ATTAGGG-CCAGAAAGGG---T--CAAAGT-TTTTATAACAT-ATCTT-TTTACCT---G-TCAAT-ATT--TGTTATAAGTG-TAAGAAGCAGAA--CTGTCAATCTG-A----CAATCTCAATCtatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATGGACACATATAGCTAGAAAGTAGAAATAATTTGAAAAGCATTATA
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 1 11 111 1111 222 11 11 44444444 11 1111 11111 1 2222222222 11111 111 111 111111 111 333333333 1111 11111111 22222222222222 1 1111111 2222222 222222222222222222222222222222 333 11111 11 1111 11 111 1 111 111 11 2 1 1 2 5555555555555555555555555555555555 22 111 55555555555 11 1 2222222 11 11 1 11 2222 2 2222 1 1 1111
lowQualScore : 0 6 44 8 444 8 7777 8 333 8 66 11 99 0 66 3 5 77777777 11 3 2222 77777 1 7 1 7 2222222222 44444 66 77 5 999 5 888 5 888 5 77 5 5 5 4 000 888 1 999 5 000000 555 1 0 333333333 5 3 3333 99999999 33333333333333 66 888 0 7777777 999 2 9999 3333333 8888888 5 5 777777777777777777777777777777 3 111 3 6 55555 44 2 3 6 3 1 2 3 555 33 3 0000 6 555 3 77 3 888 7 7 22 3 3 7 55 5 5 5 77 000 0 000 000 5 5 33 3 0 0 0 333 2 9999999999999999999999999999999999 6 0 3 55 2 3 777 66666666666 66 7 2 33 0 0000000 88 33 0 11 0 2 4444 0 0 6 1111 6 9 1 6 6 6 7 99 7 6 7 6 2 6 4444 3
lowQualScore : . . .. . ... . .... . ... . .. .. .. . .. . . ........ .. . .... ..... . . . . .......... ..... .. .. . ... . ... . ... . .. . . . . ... ... . ... . ...... ... . . ......... . . .... ........ .............. .. ... . ....... ... . .... ....... ....... . . .............................. . ... . . ..... .. . . . . . . . ... .. . .... . ... . .. . ... . . .. . . . .. . . . .. ... . ... ... . . .. . . . . ... . .................................. . . . .. . . ... ........... .. . . .. . ....... .. .. . .. . . .... . . . .... . . . . . . . .. . . . . . . .... .
lowQualScore : 0 5 44 0 000 0 0000 0 888 0 99 99 44 4 99 1 0 22222222 99 2 7777 77777 0 8 0 1 3333333333 33333 77 99 7 333 3 444 0 333 7 99 7 7 7 3 000 444 7 444 2 222222 666 0 1 666666666 0 2 1111 00000000 66666666666666 99 888 0 6666666 000 8 0000 8888888 6666666 1 0 666666666666666666666666666666 6 555 1 2 55555 22 2 1 2 1 0 3 3 888 88 3 3333 7 888 6 99 6 444 3 3 55 3 3 3 55 0 0 0 99 000 1 000 000 7 7 66 2 0 0 0 000 0 8888888888888888888888888888888888 5 2 2 00 5 2 555 55555555555 88 0 5 88 0 2222222 88 88 0 00 2 5 2222 0 7 7 8888 7 8 3 7 7 7 3 22 3 7 3 7 5 7 2222 7
consensus : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTG--CGCT-TTTAT----A---AT--AACTCTTTTACCTN---AAATATA-TT-GTGAATAACATGTAGAA-CAAAAGTGG--T-GCGGTTTT-----TN-GA--C-GAG--CTTTTNTA--TGACATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAAATC-----AGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATGTCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGT-CAT-A-TG-TTACG-TAAT---AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCGCTAA-AT-GCCNGTTA-AGGAC-----AG-----A-ACG-G--GT--CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTT--TCCGAATACTTGTAGAACAAAACAT--TTTTGA-AA--TGACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---NAAAGTCTTTTA-AACATATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
Reference ( family-2148 ) : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTG--CGCT-TTCAT----A---AT--AACTCTTTTACTTN---AAATATA-TT-GTGAATAANATGTAGAA-CAAAAGTGA--T-ACGGTTTT-----TN-GA--C-GAG--CTTTTCTA--TGACATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTAAA-NAGGGGTC-T-AGAAGGGCTGG----AA---GTNAAAATC-----AGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ANAAGAA--AATGTCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGT-CAT-AATG-TTACG-TAAT---AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTT-GCTAA-AT-GCCNNNTATAGGAC-----AG-----AAACGCG--GT--CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAA-G--ATTT--TCCGAATACTTGTAGAACAAAACAT--TTTTGA-AA--CGACGAGACCTTTCTTGTGA--TACC-AA-NAAAAGGGGCTGGCCCCT-CTAAATTA-GGGCCAGAAAGGGT---NAAAGTCTTTTATAACATATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
gi|1 : GTCTCTAACGTAAAAAGCAGCCGGAAGCGCCGGGGTTAG--GTCT-C---AA-AGCGAG--TTTCGAAAAAAGCGCCCTA----TTTTTTG--CACT-TTTATCAGCA---ATA-AACTCTTTTCCTGA---AAATAT--TT-GTGATTAACATATA-AA-CAAAA-TAA--T-A-GATTTT-----TA-AA--C-GAG--CTTTTTTATTTGACATC--AAA-AAAAATTGA-G-G-CT-GTCCCTTTTTAAATTAGGGGTCTT-AGAGGGACTGA----AA---GTCAAAAGC-----TCA-ATAT-TC-TTAAAA-CGGTA--ACTACAATTC--T--------GT-AATCCA---AG-CAT------AT-A-ATAATCT--AATGTTAA----AAC-ACACCATCTCAT-TTGTC-CA-----CC-CCATGATAGTTTTT-TGCTACAT------TTACG-TAA--------------TT-A--GGCC-AGAA--AAGTAAACTTT-TCGGG--A-C-A--C-A---TA-TA-GCTAG-AAAAGTAAGAG-ATA-TAAT--G-TAAGAGC-ATCCTATATAACAAAAAGTTG-CTTCAA--AATATCCCTCTTC-CTCTAAACGAATATGG-C-AT-TTTTCAATTTTT-GGAAATAT-ACATATTAAACGACTCCAAAGGTAGTATACGGGACGTCCCGGCCTCTAAAA-TTACTC---CTGAATAACC-CAAAAAAACGTGTAAGA-A--ATCTTATCC-AACACTTGTTTAACAAAA-ATGCTCTTGA-AA--CTTTCAGACCT---TTGTGCCTTATC-AAGGGAAAGGAGTTGG-CCCT-TTCAATTAGGGGTCAAAAAGGATCCCAAAAGTCTTTTAAAATA-ATCTTATACCC-T-ACTC---AAAT--TGTTACAA--G-CAAAATGTAG---CTCT-----TGA----CAACTCGAAT
gi|10 : gattgaagttgtgcacctgggttttaagtGGT-CAT-A-TG-CTACGGTAAT---AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-CAA--TTTT
gi|11 : GGT-CAT-A-TG-CTACGGTAAT---AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--ATTT
gi|12 : GTA-CA-----T-AACA----AATTTT--GGGT-CAT-A-TG-TTATG-TAAG---GAGG--GATTTT-AGGGACC-AGAA-CGGGTCTATCTT-T---G--ACC-T--C-G---TA-TA-TCTCG-AAAA-TGACAA-ACA-TTTT--G-AAAA-GC-AT--T
gi|13 : -TTACG-TAAT---AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-GC-
gi|14 : gt-TTACG-TAAT---AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-G
gi|15 : gtCGAG--TTC-GAAAA--GCGCCCGA---TTTTTTTG--CACT-TTTATAGC-A---AT--AACTCTTTT
gi|16 : GAG--TT--CGAAAAAGCGCCCGA---TTTTTTTG--CACT-TTTATAGC-A---AT--AACTCTTTT
gi|2 : AGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTA--TGTT-TTCAT----G---AT--AACTCCTTTACTTC---AAATATAATT-GTGGATAAAATGTTGAATCAAAAGTGG--T-GTGGTTTT-----TT-GA--C-GA---CTTTTATA--TG-CATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAAATC-----AGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATGTTGATCTTAAC-A-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGT-CATAAATG-TTACT-TAATA--AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCGCTAA-AT-GCCGGTTA-AGGA----------------------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTT--TCTGAATACTTGTAGAACAAAACAT--TTTTGA-AA--TGACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---GAAAGTCTTTTA-AACATATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|3 : aAGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTA--TGTT-TTCAT----G---AT--AACTCCTTTACTTC---AAATATAATT-GTGGATAAAATGTTGAATCAAAAGTGG--T-GTGGTTTT-----TT-GA--C-GA---CTTTTATA--TG-CATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAAATC-----AGA-ATATCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATGTTGATCTTAAC-A-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGT-CATAAATG-TTACT-TAATA--AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCGCTAA-AT-GCCGGTTA-AGGA----------------------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTT--TCTGAATACTTGTAGAACAAAACAT--TTTTGA-AA--TGACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---GAAAGTCTTTTA-AACATATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|4 : TT--G-AAAA-GC-GT--TATTGAAC-AAAAGTTG-CCC-GA--AAT---CATGTTCTCTCTAA---AAT---A-C-AATTTTTCATT-CTT-GCTAA-ATTGCCCCGTATAGGAC-----AG-----AAACGCG--GT--CGGCCCCTAAAAATTTCTCTCTTTG-ATAT-CTC---AAAAACGATCAA--------------GAA----TGTAGAACAAAACAG--TTTTGACAATGTGAC-AGACCTTTCTTGTGA--TACCTAA-CAAAAAGGGGTGGCCCCT-T--AATTA-GGGTCAT-AAGGGTTC-AAAAGTCTTTTA-AACATATCGTTTTACCGTGG-TCAATCAATTCTGTTGTAAGTGATAAGAAGCAGAGTCCGTCAAT-TGACGCCCAATT-CAAT
gi|4 : AGAATGTAGAA-CAAAA---------CAGTTTTGACAATGTGA--CAGAC--CTTTCTTG--TGATACC--TAACAAAAA--GG-G-G--TGGCCC---CTTAAT-TAGGG-TC---ATAAGGGTT-------------CAAAA-------------GTCTT-TTAAAC-A--TA--T---C-GTTT--TACCGTGGTCA-A--TCA---AT-TCTGTTGTAAGTG-ATAAGAAGCAGAGTCCGTC--AATTG-A-CGCCCAATTCAATA-TAATTAGTTATCA----AATT----AGGT-CAC-TCTG-TTCAG-TAATTATAAGGTGGATTTTTAGGGGCC-AAAATCGGGCAAATCTT-T---G--A-C-T--C-GACATA-TAATCTCTTAAAA-TGACAA-ACA-ATTTA-G-AAAA-GC-AT--TATTGACA-AAAAGTTGTCTT-GAGTAAT---CATAATCTTAACAA---GAT---GCC-A--TTTataattagttatcaaattaggtcactctgttcagtaattataaggtggatttttaggggccaaaatcgggcaaatctttgactcgacatataatctcttaaaatgacaaacaatttagaaaagcattattgacaaaaagttgtcttgagtaatcataatcttaacaagatgccattt
gi|5 : ttgaaaagcgttattgaacaaaagttgcccgaaatcatgttctctctaaaatacaatttttcattcttgctaaattgccccgtataggacagaaacgcggtcggcccctaaaaatttctctctttgatatctcaaaaacgatca-TAGCT-AAAAAGC-GCGA-AAGCGC---GGT-AG--GGCT-CGACAATATCGATCTTT--GGAAAAAGCGTC-GAT-TTTTTAATAGTCTTT-TTCAT----ACGAAT--AA-TCTTT-ATCAT---GAATATA-T--GTGA-TAACATGTAGAAACAAAAGTGG--T-GTAGTTTT-----TG-AA--C-GAC--CTTTTACA--TGACATC--GAG-AAAAA--GG-G-GGCTGGTCC---TTTGA--TAAGGGCT-T-AGAGGGGCTAG----AA---GCAAAAATC-----AGATAT-TCTTGTTAAAC-CA-TA--A--AC-ATTT--T--------TA-A--TCA---AT-TAT------AG-ATACAAGAA--AAT------------------GTTTGAT-CT----------------A----AA-----------CGT-AATC-TTA---TAA----AAGG--GATTTT-AGGG--C-AGAA-CGG-TCTATCTT-T---G--A-CCT--C-G---TAATA-TCTCG-AAAT-CGA-AA-ACT-TTTT--GCAAAG-G--GT--TATTGAAC-AAAAGTT--CTT-
gi|6 : gactgaagtattatacctattgagtctcaagctacAAAAAGC--CCG-GAGCGC---GGT-AGCGG-CTTCGA-AA-ATCGAG--AT--TCGAAAAGCGCCCGAT-TTTTTT--G--CACT-TTTAT----AGC-AT--AACTCTTTTACCTGTGAAAGTATC-TTTGT-AATAACATATAGAA--AAAAATAA--TTACGCTTTT-----TA-GG--C-GAG--CTTTTCTT--TGACATCAAAAG-AAAAA--GGAG-G-CT-GTCC---TTTAAA-TTGGGGTC-TGAGAAGGGCTGGGAACAA---GTCAAAATC------GA-ATATCTT-TAAAACGG--TA--C--ACAATTTTGT--------CTAA--TCAAGTAT-TAT------AG---------T--AATGTTTAAAATAAC-A-T-TCTTTTGT-CT-TG-CC-----CTGAT-----AGTTTTT-TGTT-CAC--ATGATTAC--TAAT---TAGG--GAGTTT-AGGGGCC-AGGG-AGTGTCAATTGTAT---G--G-A-A--C-A---TA-TA-GCTAG-AAAA-GTAGAA-ATA-ATTT--G-AAAG-GC-AT--TATttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|7 : gttttaagtgctctagacgt--TC--GAAAAAAGCGCCCGAT-TTTTTTTTG--CACTGTTTAT----AGCAATCCAACTCTTTT-CCTG---AAAAATA-TA-GTAATCAACATATAGAA-CAAAA-TAAATT-ACGGTTTT-----TA-GGGGC-GAGGCCTTTTCTT--TGACATC--AAG-AAAAA--AG-GAG-CTGGTCC---TTTAAA-TTAGGGTC-T-AGAAGGGCTGA----AA---G
gi|8 : gtAATTA-GGGCCAGAAAGGGT---CAAAGT-TTTTATAACATATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATC
gi|8 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAAC-ATATCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TGTCAATCT-GAC-A-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGT-CAT---TG-TTACG-TAAT----AGG--GA--TT-AGGGGCC-AAAA-CAGtatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactc
gi|9 : aattATTA-GGGCCAGAAAGGGT---CAAAGT-TTTTATAACATATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATCcaaatcttgaaactc
gi|9 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAAC-ATATCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TGTCAATCT-GAC-A-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGT-CAT---TG-TTACG-TAAT----AGG--GA--TT-AGGGGCC-AAAA-CAG--CAAATCT-T---GAAA-C-T--C-G---tatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactcg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATGGACACATATAGCTAGAAAGTAGAAATAATTTGAAAAGCATTATA
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 1 11 111 1111 222 11 11 44444444 1111 111 1 222222 11111 111 11 1 111 33333333 1111 11111 22222222222222 1 1111111 11 11 1111111 1111 2222 111 22222222 11 1111 11 111 1 111 111 11 44444444444 1 1 222222222222222222222222222 22 111 11 1 11 11 11 1 1 1 222222 1 1 1111
lowQualScore : 0 6 44 8 444 8 7777 8 333 8 66 11 99 0 3 5 66 77777777 66 4 7777 1111 5 888 3 666 0 7 222222 44 44444 66 77 5 999 1 0 77 5 888 5 33 5 5 77 5 1 1 5 1 9999 555 0 44444444 5 5 3 3333 77777 5 5 33333333333333 66 888 0 7777777 999 3 9999 5 2 0 88 5 5 66 5 5 2 11 8888888 1 0000 4444 4 444 3 6 77777777 44 2 3 6 3 1 2 3 555 33 3 0000 6 555 3 77 3 888 7 7 22 3 3 7 55 5 5 5 77 000 0 000 000 5 5 33 3 8 77777777777 0 444 0 777777777777777777777777777 6 0 3 55 55 777 2 999 3 3 66 3 2 33 0 33 3 88 33 0 0 0 8 3 5 6 111111 6 3 6 1 6 6 6 7 99 7 6 7 6 2 6 4444 3
lowQualScore : . . .. . ... . .... . ... . .. .. .. . . . .. ........ .. . .... .... . ... . ... . . ...... .. ..... .. .. . ... . . .. . ... . .. . . .. . . . . . .... ... . ........ . . . .... ..... . . .............. .. ... . ....... ... . .... . . . .. . . .. . . . .. ....... . .... .... . ... . . ........ .. . . . . . . . ... .. . .... . ... . .. . ... . . .. . . . .. . . . .. ... . ... ... . . .. . . ........... . ... . ........................... . . . .. .. ... . ... . . .. . . .. . .. . .. .. . . . . . . . ...... . . . . . . . . .. . . . . . . .... .
lowQualScore : 0 5 44 0 000 0 0000 0 888 0 99 99 44 4 1 0 99 22222222 99 4 6666 0000 7 666 9 444 7 1 666666 44 33333 77 99 7 333 0 6 99 0 333 7 66 7 7 99 7 7 4 2 4 4444 666 1 88888888 0 0 2 1111 99999 0 0 66666666666666 99 888 0 6666666 000 4 0000 0 2 4 88 0 0 44 1 0 2 11 5555555 0 6666 6666 0 222 3 2 00000000 22 2 1 2 1 0 3 3 888 88 3 3333 7 888 6 99 6 444 3 3 55 3 3 3 55 0 0 0 99 000 1 000 000 7 7 66 2 8 55555555555 0 222 0 555555555555555555555555555 5 2 2 00 88 555 5 888 0 5 88 2 5 88 0 88 2 88 88 0 0 2 8 2 0 7 888888 7 3 7 3 7 7 7 3 22 3 7 3 7 5 7 2222 7
consensus : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AA-CTCTTT--TACCT---NAAA-TAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTAT--GACATC--GAG-AAAAA--GG-G-GCTGGTCCTTT--GAAT-AGGGGTCT-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-A-TTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-AC-GTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAACAAAA-GTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG---CCGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
Reference ( family-2148 ) : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AA-CTCTTT--TACCT---NAAA-TAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTAT--GACATC--GAG-AAAAA--GG-G-GCTGGTCCTTT--GAAT-AGGGGTCT-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-A-TTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-AC-GTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAACAAAA-GTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNGTTA-AGG------ACAGAA-CG-GGTCGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
gi|1 : GTCTCTAACGTAAAAAGCAGCCGGAAGCGCCGGGGTTAG--GTCT-C---AA-AGCGAG--TTTCGAAAAAAGCGCCCTAT-TTTTT---GCACT-TTT--ATCAGCA---AT--AAACTCTTT--T-CCT---GAAAATAT---TTGTG-ATTAACATATA-AA-CAAAA-TAA--TA-GATTTT-----TA-AA--C-GAG--CTTTTTTATTTGACATC--AAA-AAAAATTGA-G-GCTGTCCCTTTTTAAATTAGGGGTCTTAGAGGGACTGA----AA---GTCAAAAGC-----TCAATA-T-TC-TTAAAA-CGGTA--ACTAC-AATTC--T--------GT-AATCCA---AG-CAT------AT-A-ATAATCT--AATG-TTAA----AAC-ACACCATCTCAT-TTGTC-CA-----CC-CCATGATAGTTTTT-TGCT-A-C--AT--TTACG-TAAT------------------T-AGG--CC-AGAA--AAGTAAACTTT-TCGGG--A-C-A--C-A---TA-TA-GCTAG-AAAAGTAAGAG-ATA-TAAT--G-TAAGAGC-ATCCTATATAACAAAAAGTTG-CTTCAA--AATATCCCTCTTC-CTCTAAACGAATATGG-C-AT-TTTTCAATTTTTGGAAATATACATATTAAAC-GACTCCAA-AGGTAGTATACGGGA-CG-TCCCGGCCTCTAAAA-TTACTC---CTGAATAACC-CAAAAAAACGTGT-AAGAAATCTTATCC-AACACTTGTTTAACAAAA-ATGCTCTTGA-AACT--TTCAGACCT---TTGTGCCTTATC-AAGGGAAAGGAGTTGGCCCTTTC--AATTAGGGGTCAAAAAGGATCCCA--AAAGTCTTTTA-AA-ATAATCTTATACCC-T-ACTC---AAAT--TGTTACAA--G-CAAAATGTAG---CTCT-----TGA----CAACTCGAAT
gi|10 : gattgaagttgtgcacctgggttttaagtGGTCA-T--ATG-CTACGGTAAT-------AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAACAAAA-GTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-CAA--TTTT
gi|11 : GGTCA-T--ATG-CTACGGTAAT-------AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAACAAAA-GTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--ATTT
gi|12 : GTA-CA-----T-AACA----AATTTT--GGGTCA-T--ATG-TTATG-TAAG-------GAGG--GATTTT-AGGGACC-AGAA-CGGGTCTATCTT-T---G--ACC-T--C-G---TA-TA-TCTCG-AAAA-TGACAA-ACA-TTTT--G-AAAA-GC-AT--T
gi|13 : -TTACG-TAAT-------AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-GC-
gi|14 : gt-TTACG-TAAT-------AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-G
gi|15 : gtCGAG--TTC-GAAAA--GCGCCCGA---TTTTTTTGCACT-TTT--ATAGC-A---AT--AA-CTCTTT--T
gi|16 : GAG--TT--CGAAAAAGCGCCCGA---TTTTTTTGCACT-TTT--ATAGC-A---AT--AA-CTCTTT--T
gi|2 : AGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----G---AT--AA-CTCCTT--TACTT---CAAA-TAT-AATTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTT-----TT-GA--C-GA---CTTTTATAT--G-CATC--GAG-AAAAA--GG-G-GCTGGTCCTTT--GAAA-AGGGATCT-AGA--GGCTAG----AA---GTAAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-A-TTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAAC-A-AC-GTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA------AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAACAAAA-GTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A--------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|3 : aAGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----G---AT--AA-CTCCTT--TACTT---CAAA-TAT-AATTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTT-----TT-GA--C-GA---CTTTTATAT--G-CATC--GAG-AAAAA--GG-G-GCTGGTCCTTT--GAAA-AGGGATCT-AGA--GGCTAG----AA---GTAAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-A-TTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAAC-A-AC-GTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA------AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAACAAAA-GTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A--------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|4 : TT--G-AAAA-GC-GT--TATTGAACAAAA-GTTG-CCC-GA--AAT---CATGTTCTCTCTAA---AAT---A-C-AATTTTTCATT-CTT-G-----------CTAAATTGCCCCGTATAGG------ACAGAAACGCGGTCGGCCCCTAAAAATTTCTCTCTTTG-ATATC-TC---AAAAACGATCAA------------GAAT----GTAGAACAAAACAG--TTTTGACAATGTGACA-GACCTTTCTTGTGA--TACCTAA-CAAAAAGGGGTGGCCCCT--TAA-TTAGGG-TCATAA-GGGT---TCAAAAGTCTTTTA-AACAT-ATCGTTTTACCGTGG-TCAATCAATTCTGTTGTAAGTGATAAGAAGCAGAGTCCGTCAAT-TGACGCCCAATT-CAAT
gi|4 : -CTCTTTGATATCT---CAAA-AACGA-TCAAG-AAT-----GTAGAA-CAAAA--------CAGTTTTGACAATGTGA--CAGAC--CTTTCTTGT--GATACC--TAACAAAAA--GG-G-G-TGGCCCCTT--AATT-AGGG-TC--ATAAGGGTT-------------CAAAA------------G-TCTT-TTAAAC-A--TA--T---C-G-TTT--TACCGTGGTCA-A--TCA---AT-TCTGTTGTAAGTG-ATAAGAAGCAGAG-TCCGTC--AATTG-AC-GCCCAATTCAATA-TAATTAGTTATCA----AATT----AGGTCACT--CTG-TTCAG-TAATTAT----AAGGTGGATTTTTAGGGGCC-AAAATCGGGCAAATCTT-T---G--A-C-T--C-GACATA-TAATCTCTTAAAA-TGACAA-ACA-ATTTA-G-AAAA-GC-AT--TATTGACAAAAA-GTTGTCTT-GAGTAAT---CATAATCTTAACAA---GAT---GCC-A--TTTataattagttatcaaattaggtcactctgttcagtaattataaggtggatttttaggggccaaaatcgggcaaatctttgactcgacatataatctcttaaaatgacaaacaatttagaaaagcattattgacaaaaagttgtcttgagtaatcataatcttaacaagatgccattt
gi|5 : ttgaaaagcgttattgaacaaaagttgcccgaaatcatgttctctctaaaatacaatttttcattcttgctaaattgccccgtataggacagaaacgcggtcggcccctaaaaatttct-TAGCT-AAAAAGC-GCGA-AAGCGC---GGT-AG--GGCT-CGACAATATCGATCTTT--GGAAAAAGCGTC-GAT-TTTTTAATAGTCT-TTTTCAT----ACGAAT--AA--TCTTT---ATCA---TGAA-TAT-A-T-GTG-A-TAACATGTAGAAACAAAAGTGG--TGTAGTTTT-----TG-AA--C-GAC--CTTTTACAT--GACATC--GAG-AAAAAG-GG-G-GCTGGTCCTTT--G-AT-AAGGGCTT-AGAGGGGCTAG----AA---GCAAAAATC-----AG-ATATTCTTGTTAAAC-CA-TA--A--AC-A-TTT--T--------TA-A--TCA---AT-TAT------AG-ATACAAGAA--AATGTTTGATC-TA---A-AC-G--TAAT-CT
gi|5 : gactgaagtattatacctattgagtctcaagctacACG-TAATCTTATAAAAGG--GATTTT-AGGG--C-AGAA-CGG-TCTATCTT-T---G--A-CCT--C-G---TAATA-TCTCG-AAAT-CGA-AA-ACT-TTTT--GCAAAG-G--GT--TATTGAACAAAA-GTT--CTT-tataaaagggattttagggcagaacggtctatctttgacctcgtaatatctcgaaatcgaaaactttttgcaaagggttattgaacaaaagttcttttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|6 : gactgaagtattatacctattgagtctcaagctactagctaaaaagcgcgaaagcgcggtagggctcgacaatatcgatctttggaaaaagcgtcgattttttaatagtctttttcatacgaataatctttatcatgaatatatgtgataacatgtagaaacaaaagtggtgtagtttttgaacgaccttttacatgacatcgagaaaaagggggctggtcctttgataagggcttagaggggctagaagcaaaaatcagatattcttgttaaaccataaacatttttaatcaattatagatacaagaaaatgtttgatctaaAAAAAGC--CCG-GAGCGC---GGT-AGCGG-CTTCGA-AA-ATCGAG--AT--TCGAAAAGCGCCCGA---TTTTTTTGCACT-TTT--AT----AGC-AT--AA-CTCTTT--TACCTGTGAAAG-TAT-C-TT-TGTAATAACATATAGAA--AAAAATAAT-TACGCTTTT-----TA-GG--C-GAG--CTTTTCTTT--GACATCAAAAG-AAAAA--GGAG-GCT-GTCCTTT--AAAT-TGGGGTCTGAGAAGGGCTGGGAACAA---GTCAAAATC------GAATA-TCTT-TAAAACGG--TA--C--ACAA-TTTTGT--------CTAA--TCAAGTAT-TAT------AG---------T--AATG-TTTAAAATAAC-A-TT-CTTTTGT-CT-TG-CC-----CTGAT-----AGTTTTT-TGTTCA-C--ATGATTAC--TAAT-------TAGG--GAGTTT-AGGGGCC-AGGG-AGTGTCAATTGTAT---G--G-A-A--C-A---TA-TA-GCTAG-AAAA-GTAGAA-ATA-ATTT--G-AAAG-GC-AT--TATttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|7 : gttttaagtgctctagacgt--TC--GAAAAAAGCGCCCGAT-TTTTTTTTGCACTGTTT--AT----AGCAATCCAA-CTCTTT--T-CCT---GAAA-AAT-A-TAGTA-ATCAACATATAGAA-CAAAA-TAAATTACGGTTTT-----TA-GGGGC-GAGGCCTTTTCTTT--GACATC--AAG-AAAAA--AG-GAGCTGGTCCTTT--AAAT-TAGGGTCT-AGAAGGGCTGA----AA---G
gi|8 : gtAATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATC
gi|8 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAACATA-TCTT-TTTA-C-C--TGTCA--AT-A-TTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATCT-GAC-A-AT-CTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT--------AGG--GA--TT-AGGGGCC-AAAA-CAGtatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactc
gi|9 : aattATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATCcaaatcttgaaactc
gi|9 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAACATA-TCTT-TTTA-C-C--TGTCA--AT-A-TTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATCT-GAC-A-AT-CTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT--------AGG--GA--TT-AGGGGCC-AAAA-CAG--CAAATCT-T---GAAA-C-T--C-G---tatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactcg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATGGACACATATAGCTAGAAAGTAGAAATAATTTGAAAAGCATTATA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 11 111 1111 222 11 222 44444444 11 1111 111 1 222222 11111 111 11 111 111 33333333 1111 11111111 22222222222222 1 1111111 11 11 1111111 1111 2222 111 22222222 11 1111 11 111 1 111 111 11 44444444444 1 1 22222222222222222222222222222 22 111 11 1 11 11 11 1 1 1 222222 1 1 1111
lowQualScore : 0 6 44 8 444 8 7777 8 333 8 66 11 888 3 5 66 77777777 11 7777 1111 5 777 3 666 0 7 222222 44 44444 66 77 5 999 1 888 5 888 5 33 5 5 4 000 5 1 999 5 1 9999 555 0 44444444 5 5 3 3333 99999999 33333333333333 66 888 0 7777777 999 3 9999 5 2 0 88 5 5 5 1 5 5 2 11 8888888 1 0000 4444 4 444 3 6 55555555 44 2 3 6 3 1 2 3 555 33 3 0000 6 555 3 77 3 888 7 7 22 3 3 7 55 5 5 5 77 000 0 000 000 5 5 33 3 8 77777777777 0 222 0 66666666666666666666666666666 6 0 3 55 55 777 2 999 3 3 66 3 2 33 0 33 3 88 33 0 0 0 8 3 5 6 111111 6 3 6 1 6 6 6 7 99 7 6 7 6 2 6 4444 3
lowQualScore : . . .. . ... . .... . ... . .. .. ... . . .. ........ .. .... .... . ... . ... . . ...... .. ..... .. .. . ... . ... . ... . .. . . . ... . . ... . . .... ... . ........ . . . .... ........ .............. .. ... . ....... ... . .... . . . .. . . . . . . . .. ....... . .... .... . ... . . ........ .. . . . . . . . ... .. . .... . ... . .. . ... . . .. . . . .. . . . .. ... . ... ... . . .. . . ........... . ... . ............................. . . . .. .. ... . ... . . .. . . .. . .. . .. .. . . . . . . . ...... . . . . . . . . .. . . . . . . .... .
lowQualScore : 0 5 44 0 000 0 0000 0 888 0 99 99 555 1 0 99 22222222 99 6666 0000 4 333 9 444 7 1 666666 44 33333 77 99 7 333 0 444 0 333 7 66 7 7 3 000 7 7 444 2 4 4444 666 1 88888888 0 0 2 1111 00000000 66666666666666 99 888 0 6666666 000 4 0000 0 2 4 88 0 0 0 4 1 0 2 11 5555555 0 6666 6666 0 222 3 2 11111111 22 2 1 2 1 0 3 3 888 88 3 3333 7 888 6 99 6 444 3 3 55 3 3 3 55 0 0 0 99 000 1 000 000 7 7 66 2 8 55555555555 0 888 0 55555555555555555555555555555 5 2 2 00 88 555 5 888 0 5 88 2 5 88 0 88 2 88 88 0 0 2 8 2 0 7 888888 7 3 7 3 7 7 7 3 22 3 7 3 7 5 7 2222 7
consensus : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTA--TGACATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
Reference ( family-2148 ) : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTA--TGACATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
gi|1 : GTCTCTAACGTAAAAAGCAGCCGGAAGCGCCGGGGTTAG--GTCT-C---AA-AGCGAG--TTTCGAAAAAAGCGCCCTA----TTTTTTGCACT-TTT--ATCAGCA---ATA-AACTCTTT--T-CCT---GAAA-AT-ATTTGTG-ATTAACATATA-AA-CAAAA-TAA--TA-GATTTT-----TA-AA--C-GAG--CTTTTTTATTTGACATC--AAA-AAAAATTGA-G-GCT-GTCCCTTTTTAAATTAGGGGTCTT-AGAGGGACTGA----AA---GTCAAAAGC-----TCAATA-T-TC-TTAAAA-CGGTA--ACTACAATTC--T--------GT-AATCCA---AG-CAT------AT-A-ATAATCT--AATG-TTAA----AAC-ACACCATCTCAT-TTGTC-CA-----CC-CCATGATAGTTTTT-TGCT-A-C--AT--TTACG-TAA------------------TT-A--GGCC-AGAA--AAGTAAACTTT-TCGGG--A-C-A--C-A---TA-TA-GCTAG-AAAAGTAAGAG-ATA-TAAT--G-TAAGAGC-ATCCTATATAACAAAAAGTTG-CTTCAA--AATATCCCTCTTC-CTCTAAACGAATATGG-C-AT-TTTTCAATTTTTGGAAATATACATATTAAAC-GACTCCAA-AGGTAGTATACGGGA-CGTCC---CGGCCTCTAAAA-TTACTC---CTGAATAACC-CAAAAAAACGTGT-AAGAAATCTTATCC-AACACTTGTTTAACAAAA-ATGCTCTTGA-AACT--TTCAGACCT---TTGTGCCTTATC-AAGGGAAAGGAGTTGGCCCTTTC--AATTAGGGGTCAAAAAGGATCCCA--AAAGTCTTTTA-AA-ATAATCTTATACCC-T-ACTC---AAAT--TGTTACAA--G-CAAAATGTAG---CTCT-----TGA----CAACTCGAAT
gi|10 : gattgaagttgtgcacctgggttttaagtGGTCA-T--ATG-CTACGGTAAT-------AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-CAA--TTTT
gi|11 : GGTCA-T--ATG-CTACGGTAAT-------AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--ATTT
gi|12 : GTA-CA-----T-AACA----AATTTT--GGGTCA-T--ATG-TTATG-TAAG-------GAGG--GATTTT-AGGGACC-AGAA-CGGGTCTATCTT-T---G--ACC-T--C-G---TA-TA-TCTCG-AAAA-TGACAA-ACA-TTTT--G-AAAA-GC-AT--T
gi|13 : -TTACG-TAAT-------AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-GC-
gi|14 : gt-TTACG-TAAT-------AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-G
gi|15 : gtCGAG--TTC-GAAAA--GCGCCCGA---TTTTTTTGCACT-TTT--ATAGC-A---AT--AACTCTTT--T
gi|16 : GAG--TT--CGAAAAAGCGCCCGA---TTTTTTTGCACT-TTT--ATAGC-A---AT--AACTCTTT--T
gi|2 : AGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----G---AT--AACTCCTT--TACTT---CAAATAT-AATTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTT-----TT-GA--C-GA---CTTTTATA--TG-CATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAAC-A-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA------AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A----------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|3 : aAGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----G---AT--AACTCCTT--TACTT---CAAATAT-AATTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTT-----TT-GA--C-GA---CTTTTATA--TG-CATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAAC-A-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA------AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A----------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|4 : TT--G-AAAA-GC-GT--TATTGAAC-AAAAGTTG-CCC-GA--AAT---CATGTTCTCTCTAA---AAT---A-C-AATTTTTCATT-CTT-G-----------CTAAATTGCCCCGTATAGG------ACAGAAACG--CGGTCGGCCCCTAAAAATTTCTCTCTTTG-ATATC-TC---AAAAACGATCAA------------GAAT----GTAGAACAAAACAG--TTTTGACAATGTGACA-GACCTTTCTTGTGA--TACCTAA-CAAAAAGGGGTGGCCCCT--TAA-TTAGGG-TCATAA-GGGT---TCAAAAGTCTTTTA-AACAT-ATCGTTTTACCGTGG-TCAATCAATTCTGTTGTAAGTGATAAGAAGCAGAGTCCGTCAAT-TGACGCCCAATT-CAAT
gi|4 : CTCTTTGATATCT---CAAAAACGA-TCAAG-AAT-----GTAGAA-CAAAA--------CAGTTTTGACAATGTGA--CAGAC--CTTTCTTG--TGATACC--TAACAAAAA--GG-G-G-TGGCCC---CTTAAT-TAGGG-TC---ATAAGGGTT-------------CAAAA------------G-TCTT-TTAAAC-A--TA--T---C-GTTT--TACCGTGGTCA-A--TCA---AT-TCTGTTGTAAGTG-ATAAGAAGCAGAG-TCCGTC--AATTG-A-CGCCCAATTCAATA-TAATTAGTTATCA----AATT----AGGTCACT--CTG-TTCAG-TAATTAT----AAGGTGGATTTTTAGGGGCC-AAAATCGGGCAAATCTT-T---G--A-C-T--C-GACATA-TAATCTCTTAAAA-TGACAA-ACA-ATTTA-G-AAAA-GC-AT--TATTGACA-AAAAGTTGTCTT-GAGTAAT---CATAATCTTAACAA---GAT---GCC-A--TTTataattagttatcaaattaggtcactctgttcagtaattataaggtggatttttaggggccaaaatcgggcaaatctttgactcgacatataatctcttaaaatgacaaacaatttagaaaagcattattgacaaaaagttgtcttgagtaatcataatcttaacaagatgccattt
gi|5 : ttgaaaagcgttattgaacaaaagttgcccgaaatcatgttctctctaaaatacaatttttcattcttgctaaattgccccgtataggacagaaacgcggtcggcccctaaaaatttct-TAGCT-AAAAAGC-GCGA-AAGCGC---GGT-AG--GGCT-CGACAATATCGATCTTT--GGAAAAAGCGTC-GAT-TTTTTAATAGTCT-TTTTCAT----ACGAAT--AA-TCTTT---ATCA---TGAATAT-A-T-GTG-A-TAACATGTAGAAACAAAAGTGG--TGTAGTTTT-----TG-AA--C-GAC--CTTTTACA--TGACATC--GAG-AAAAAG-GG-G-GCTGGTCC---TTTG-A-TAAGGGCT-T-AGAGGGGCTAG----AA---GCAAAAATC-----AG-ATATTCTTGTTAAAC-CA-TA--A--AC-ATTT--T--------TA-A--TCA---AT-TAT------AG-ATACAAGAA--AATGTTTGATC-TA---A-A-CG--TAAT-CT
gi|5 : gactgaagtattatacctattgagtctcaagctacACG-TAATCTTATAAAAGG--GATTTT-AGGG--C-AGAA-CGG-TCTATCTT-T---G--A-CCT--C-G---TAATA-TCTCG-AAAT-CGA-AA-ACT-TTTT--GCAAAG-G--GT--TATTGAAC-AAAAGTT--CTT-tataaaagggattttagggcagaacggtctatctttgacctcgtaatatctcgaaatcgaaaactttttgcaaagggttattgaacaaaagttcttttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|6 : gactgaagtattatacctattgagtctcaagctactagctaaaaagcgcgaaagcgcggtagggctcgacaatatcgatctttggaaaaagcgtcgattttttaatagtctttttcatacgaataatctttatcatgaatatatgtgataacatgtagaaacaaaagtggtgtagtttttgaacgaccttttacatgacatcgagaaaaagggggctggtcctttgataagggcttagaggggctagaagcaaaaatcagatattcttgttaaaccataaacatttttaatcaattatagatacaagaaaatgtttgatctaaAAAAAGC--CCG-GAGCGC---GGT-AGCGG-CTTCGA-AA-ATCGAG--AT--TCGAAAAGCGCCCGA---TTTTTTTGCACT-TTT--AT----AGC-AT--AACTCTTT--TACCTGTGAAAGTAT-C-TT-TGTAATAACATATAGAA--AAAAATAAT-TACGCTTTT-----TA-GG--C-GAG--CTTTTCTT--TGACATCAAAAG-AAAAA--GGAG-GCT-GTCC---TTTAAA-TTGGGGTC-TGAGAAGGGCTGGGAACAA---GTCAAAATC------GAATA-TCTT-TAAAACGG--TA--C--ACAATTTTGT--------CTAA--TCAAGTAT-TAT------AG---------T--AATG-TTTAAAATAAC-A-T-TCTTTTGT-CT-TG-CC-----CTGAT-----AGTTTTT-TGTTCA-C--ATGATTAC--TAAT-------TAGG--GAGTTT-AGGGGCC-AGGG-AGTGTCAATTGTAT---G--G-A-A--C-A---TA-TA-GCTAG-AAAA-GTAGAA-ATA-ATTT--G-AAAG-GC-AT--TATttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|7 : gttttaagtgctctagacgt--TC--GAAAAAAGCGCCCGAT-TTTTTTTTGCACTGTTT--AT----AGCAATCCAACTCTTT--T-CCT---GAAAAAT-A-TAGTA-ATCAACATATAGAA-CAAAA-TAAATTACGGTTTT-----TA-GGGGC-GAGGCCTTTTCTT--TGACATC--AAG-AAAAA--AG-GAGCTGGTCC---TTTAAA-TTAGGGTC-T-AGAAGGGCTGA----AA---G
gi|8 : gtAATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATC
gi|8 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAACATA-TCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATCT-GAC-A-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT--------AGG--GA--TT-AGGGGCC-AAAA-CAGtatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactc
gi|9 : aattATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATCcaaatcttgaaactc
gi|9 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAACATA-TCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATCT-GAC-A-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT--------AGG--GA--TT-AGGGGCC-AAAA-CAG--CAAATCT-T---GAAA-C-T--C-G---tatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactcg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATGGACACATATAGCTAGAAAGTAGAAATAATTTGAAAAGCATTATA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 11 111 1111 222 11 222 44444444 11 1111 111 1 222222 11111 111 11 111 111 33333333 1111 11111111 22222222222222 1 1111111 11 11 1111111 1111 2222 111 22222222 11 1111 11 111 1 111 111 11 44444444444 1 1 22222222222222222222222222222 22 111 11 1 11 11 11 1 1 1 222222 1 1 1111
lowQualScore : 0 6 44 8 444 8 7777 8 333 8 66 11 888 3 5 66 77777777 11 7777 1111 5 777 3 666 0 7 222222 44 44444 66 77 5 999 1 888 5 888 5 33 5 5 4 000 5 1 999 5 1 9999 555 0 44444444 5 5 3 3333 99999999 33333333333333 66 888 0 7777777 999 3 9999 5 2 0 88 5 5 5 1 5 5 2 11 8888888 1 0000 4444 4 444 3 6 55555555 44 2 3 6 3 1 2 3 555 33 3 0000 6 555 3 77 3 888 7 7 22 3 3 7 55 5 5 5 77 000 0 000 000 5 5 33 3 8 77777777777 0 222 0 66666666666666666666666666666 6 0 3 55 55 777 2 999 3 3 66 3 2 33 0 33 3 88 33 0 0 0 8 3 5 6 111111 6 3 6 1 6 6 6 7 99 7 6 7 6 2 6 4444 3
lowQualScore : . . .. . ... . .... . ... . .. .. ... . . .. ........ .. .... .... . ... . ... . . ...... .. ..... .. .. . ... . ... . ... . .. . . . ... . . ... . . .... ... . ........ . . . .... ........ .............. .. ... . ....... ... . .... . . . .. . . . . . . . .. ....... . .... .... . ... . . ........ .. . . . . . . . ... .. . .... . ... . .. . ... . . .. . . . .. . . . .. ... . ... ... . . .. . . ........... . ... . ............................. . . . .. .. ... . ... . . .. . . .. . .. . .. .. . . . . . . . ...... . . . . . . . . .. . . . . . . .... .
lowQualScore : 0 5 44 0 000 0 0000 0 888 0 99 99 555 1 0 99 22222222 99 6666 0000 4 333 9 444 7 1 666666 44 33333 77 99 7 333 0 444 0 333 7 66 7 7 3 000 7 7 444 2 4 4444 666 1 88888888 0 0 2 1111 00000000 66666666666666 99 888 0 6666666 000 4 0000 0 2 4 88 0 0 0 4 1 0 2 11 5555555 0 6666 6666 0 222 3 2 11111111 22 2 1 2 1 0 3 3 888 88 3 3333 7 888 6 99 6 444 3 3 55 3 3 3 55 0 0 0 99 000 1 000 000 7 7 66 2 8 55555555555 0 888 0 55555555555555555555555555555 5 2 2 00 88 555 5 888 0 5 88 2 5 88 0 88 2 88 88 0 0 2 8 2 0 7 888888 7 3 7 3 7 7 7 3 22 3 7 3 7 5 7 2222 7
consensus : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTA--TGACATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
Reference ( family-2148 ) : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTA--TGACATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
gi|1 : GTCTCTAACGTAAAAAGCAGCCGGAAGCGCCGGGGTTAG--GTCT-C---AA-AGCGAG--TTTCGAAAAAAGCGCCCTA----TTTTTTGCACT-TTT--ATCAGCA---ATA-AACTCTTT--T-CCT---GAAA-AT-ATTTGTG-ATTAACATATA-AA-CAAAA-TAA--TA-GATTTT-----TA-AA--C-GAG--CTTTTTTATTTGACATC--AAA-AAAAATTGA-G-GCT-GTCCCTTTTTAAATTAGGGGTCTT-AGAGGGACTGA----AA---GTCAAAAGC-----TCAATA-T-TC-TTAAAA-CGGTA--ACTACAATTC--T--------GT-AATCCA---AG-CAT------AT-A-ATAATCT--AATG-TTAA----AAC-ACACCATCTCAT-TTGTC-CA-----CC-CCATGATAGTTTTT-TGCT-A-C--AT--TTACG-TAA------------------TT-A--GGCC-AGAA--AAGTAAACTTT-TCGGG--A-C-A--C-A---TA-TA-GCTAG-AAAAGTAAGAG-ATA-TAAT--G-TAAGAGC-ATCCTATATAACAAAAAGTTG-CTTCAA--AATATCCCTCTTC-CTCTAAACGAATATGG-C-AT-TTTTCAATTTTTGGAAATATACATATTAAAC-GACTCCAA-AGGTAGTATACGGGA-CGTCC---CGGCCTCTAAAA-TTACTC---CTGAATAACC-CAAAAAAACGTGT-AAGAAATCTTATCC-AACACTTGTTTAACAAAA-ATGCTCTTGA-AACT--TTCAGACCT---TTGTGCCTTATC-AAGGGAAAGGAGTTGGCCCTTTC--AATTAGGGGTCAAAAAGGATCCCA--AAAGTCTTTTA-AA-ATAATCTTATACCC-T-ACTC---AAAT--TGTTACAA--G-CAAAATGTAG---CTCT-----TGA----CAACTCGAAT
gi|10 : gattgaagttgtgcacctgggttttaagtGGTCA-T--ATG-CTACGGTAAT-------AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-CAA--TTTT
gi|11 : GGTCA-T--ATG-CTACGGTAAT-------AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--ATTT
gi|12 : GTA-CA-----T-AACA----AATTTT--GGGTCA-T--ATG-TTATG-TAAG-------GAGG--GATTTT-AGGGACC-AGAA-CGGGTCTATCTT-T---G--ACC-T--C-G---TA-TA-TCTCG-AAAA-TGACAA-ACA-TTTT--G-AAAA-GC-AT--T
gi|13 : -TTACG-TAAT-------AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-GC-
gi|14 : gt-TTACG-TAAT-------AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-G
gi|15 : gtCGAG--TTC-GAAAA--GCGCCCGA---TTTTTTTGCACT-TTT--ATAGC-A---AT--AACTCTTT--T
gi|16 : GAG--TT--CGAAAAAGCGCCCGA---TTTTTTTGCACT-TTT--ATAGC-A---AT--AACTCTTT--T
gi|2 : AGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----G---AT--AACTCCTT--TACTT---CAAATAT-AATTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTT-----TT-GA--C-GA---CTTTTATA--TG-CATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAAC-A-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA------AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A----------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|3 : aAGTCT-TAGCTCAAAAAGC-ATCG-AAGCGC---GGT-AG--G-CT-C-A-AA-ATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----G---AT--AACTCCTT--TACTT---CAAATAT-AATTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTT-----TT-GA--C-GA---CTTTTATA--TG-CATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAAC-A-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA------AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A----------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|4 : TT--G-AAAA-GC-GT--TATTGAAC-AAAAGTTG-CCC-GA--AAT---CATGTTCTCTCTAA---AAT---A-C-AATTTTTCATT-CTT-G-----------CTAAATTGCCCCGTATAGG------ACAGAAACG--CGGTCGGCCCCTAAAAATTTCTCTCTTTG-ATATC-TC---AAAAACGATCAA------------GAAT----GTAGAACAAAACAG--TTTTGACAATGTGACA-GACCTTTCTTGTGA--TACCTAA-CAAAAAGGGGTGGCCCCT--TAA-TTAGGG-TCATAA-GGGT---TCAAAAGTCTTTTA-AACAT-ATCGTTTTACCGTGG-TCAATCAATTCTGTTGTAAGTGATAAGAAGCAGAGTCCGTCAAT-TGACGCCCAATT-CAAT
gi|4 : CTCTTTGATATCT---CAAAAACGA-TCAAG-AAT-----GTAGAA-CAAAA--------CAGTTTTGACAATGTGA--CAGAC--CTTTCTTG--TGATACC--TAACAAAAA--GG-G-G-TGGCCC---CTTAAT-TAGGG-TC---ATAAGGGTT-------------CAAAA------------G-TCTT-TTAAAC-A--TA--T---C-GTTT--TACCGTGGTCA-A--TCA---AT-TCTGTTGTAAGTG-ATAAGAAGCAGAG-TCCGTC--AATTG-A-CGCCCAATTCAATA-TAATTAGTTATCA----AATT----AGGTCACT--CTG-TTCAG-TAATTAT----AAGGTGGATTTTTAGGGGCC-AAAATCGGGCAAATCTT-T---G--A-C-T--C-GACATA-TAATCTCTTAAAA-TGACAA-ACA-ATTTA-G-AAAA-GC-AT--TATTGACA-AAAAGTTGTCTT-GAGTAAT---CATAATCTTAACAA---GAT---GCC-A--TTTataattagttatcaaattaggtcactctgttcagtaattataaggtggatttttaggggccaaaatcgggcaaatctttgactcgacatataatctcttaaaatgacaaacaatttagaaaagcattattgacaaaaagttgtcttgagtaatcataatcttaacaagatgccattt
gi|5 : ttgaaaagcgttattgaacaaaagttgcccgaaatcatgttctctctaaaatacaatttttcattcttgctaaattgccccgtataggacagaaacgcggtcggcccctaaaaatttct-TAGCT-AAAAAGC-GCGA-AAGCGC---GGT-AG--GGCT-CGACAATATCGATCTTT--GGAAAAAGCGTC-GAT-TTTTTAATAGTCT-TTTTCAT----ACGAAT--AA-TCTTT---ATCA---TGAATAT-A-T-GTG-A-TAACATGTAGAAACAAAAGTGG--TGTAGTTTT-----TG-AA--C-GAC--CTTTTACA--TGACATC--GAG-AAAAAG-GG-G-GCTGGTCC---TTTG-A-TAAGGGCT-T-AGAGGGGCTAG----AA---GCAAAAATC-----AG-ATATTCTTGTTAAAC-CA-TA--A--AC-ATTT--T--------TA-A--TCA---AT-TAT------AG-ATACAAGAA--AATGTTTGATC-TA---A-A-CG--TAAT-CT
gi|5 : gactgaagtattatacctattgagtctcaagctacACG-TAATCTTATAAAAGG--GATTTT-AGGG--C-AGAA-CGG-TCTATCTT-T---G--A-CCT--C-G---TAATA-TCTCG-AAAT-CGA-AA-ACT-TTTT--GCAAAG-G--GT--TATTGAAC-AAAAGTT--CTT-tataaaagggattttagggcagaacggtctatctttgacctcgtaatatctcgaaatcgaaaactttttgcaaagggttattgaacaaaagttcttttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|6 : gactgaagtattatacctattgagtctcaagctactagctaaaaagcgcgaaagcgcggtagggctcgacaatatcgatctttggaaaaagcgtcgattttttaatagtctttttcatacgaataatctttatcatgaatatatgtgataacatgtagaaacaaaagtggtgtagtttttgaacgaccttttacatgacatcgagaaaaagggggctggtcctttgataagggcttagaggggctagaagcaaaaatcagatattcttgttaaaccataaacatttttaatcaattatagatacaagaaaatgtttgatctaaAAAAAGC--CCG-GAGCGC---GGT-AGCGG-CTTCGA-AA-ATCGAG--AT--TCGAAAAGCGCCCGA---TTTTTTTGCACT-TTT--AT----AGC-AT--AACTCTTT--TACCTGTGAAAGTAT-C-TT-TGTAATAACATATAGAA--AAAAATAAT-TACGCTTTT-----TA-GG--C-GAG--CTTTTCTT--TGACATCAAAAG-AAAAA--GGAG-GCT-GTCC---TTTAAA-TTGGGGTC-TGAGAAGGGCTGGGAACAA---GTCAAAATC------GAATA-TCTT-TAAAACGG--TA--C--ACAATTTTGT--------CTAA--TCAAGTAT-TAT------AG---------T--AATG-TTTAAAATAAC-A-T-TCTTTTGT-CT-TG-CC-----CTGAT-----AGTTTTT-TGTTCA-C--ATGATTAC--TAAT-------TAGG--GAGTTT-AGGGGCC-AGGG-AGTGTCAATTGTAT---G--G-A-A--C-A---TA-TA-GCTAG-AAAA-GTAGAA-ATA-ATTT--G-AAAG-GC-AT--TATttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|7 : gttttaagtgctctagacgt--TC--GAAAAAAGCGCCCGAT-TTTTTTTTGCACTGTTT--AT----AGCAATCCAACTCTTT--T-CCT---GAAAAAT-A-TAGTA-ATCAACATATAGAA-CAAAA-TAAATTACGGTTTT-----TA-GGGGC-GAGGCCTTTTCTT--TGACATC--AAG-AAAAA--AG-GAGCTGGTCC---TTTAAA-TTAGGGTC-T-AGAAGGGCTGA----AA---G
gi|8 : gtAATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATC
gi|8 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAACATA-TCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATCT-GAC-A-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT--------AGG--GA--TT-AGGGGCC-AAAA-CAGtatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactc
gi|9 : aattATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATCcaaatcttgaaactc
gi|9 : AGGGCCAG----AAAGGGTCAAAGTTTTTATAACATA-TCTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATCT-GAC-A-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT--------AGG--GA--TT-AGGGGCC-AAAA-CAG--CAAATCT-T---GAAA-C-T--C-G---tatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactcg
blockSeqs : . C A . . . CGG T GAC T CT C TGT A G TC AGCA CC GATA GTGA T AA T TAA T ATAAT GT GACAA GT GG A GGC A A A AAA C G A A G . . A TG A A GAAC AGG TTTATAAC T G A CA TCAAT TACCGTGGTCA . AGT G TGTTGTA TG C GCAG T G TT T . . G T T G GT ATTAGTT A . TTCG C AAA A G CTTATAAA TG T T T T T C A . AA C CTC G ACA A AT T AT C T TG C . C . . T . GT . G . . C A AT T C . T GGT T ACAGAAACGCGGTCGGCCCCT G T G CT . C ACG A T TG A C . C TG A TT . T . G T G G TCA C T . A G G . A TC A A A T C G CGCC C
blockSeqs : . C A . . . GG . GA . . . TGT A . . AGCA . TA C T AA T GA T TAAAT GT . T . . C A A A G . . . . G . . A T G A . AGG TTTATAAC . . A GG TCAAT TGTCTA . . G T AT C AA . G TT . . . G T . G GT TT A . TTCG . AAA . G TATA . T . T . T C . . AA . CTC G . . T . AC C T TG . . C . . . . . . G . . . . . T C . . GGT . A G T . CT . C ACG A T TG A C . . . A T . . . G T G G G C T . A . . . A . A . A . C G . C
blockSeqs : . . G . . . G . A . . . TT G . . ACGA . TA C A GA C GA A GTGG GT . T . . C T G A G . . . . G . . G T A A . . AGA . . A C CACA TCT . . . T A T AA . C AT . . . G C . G A TT A . TTT . A . . AA . T . . . T C . . AA . CT . . . T . AC . . A . . . . . . . . . G . . . . . . . . . CCG . A A T . T . C . . . G . C . . . . T . . . . T . G G C . . A . . . A . A . A . C G . T
blockSeqs : . . . . G . A . . . TT G . . AGCA . TA C T A T AA . GTGG AC . G . . G A A A T . . . . G . . G T A G . . AGA . . A C AAC TCT . . . T A C AA . G T . . . G T . A A CT T . TG . A . . AA . T . . . A C . . . . T . . . T . AT . . . . . . . . . . . . A . . . . . . . C . . . . . . . . . . . . . C . . T
blockSeqs : . . . T . . AGC . A T T C A AT . GTGG AC . A . . . C T . G . . . . G . . G T A G . . AG . . A A AAC TTA . . . T A G AA . T T . . . C T . A A T A . A . A . . A . T . . . A C . . . . T . . . T . AT . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . G . T G A A . A . . C . A . . . C T . A . . . . . . . . . A A . . GA . . . C AAC GTT . . . . A G C . A T . . . C . . A A T T . A . C . . A . T . . . C C . . . . T . . . T . AT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . G . . A . . . . . . C TC GTT . . . . . . C . A . . . . C . . . G T T . A . A . . G . T . . . C C . . . . T . . . T . TC . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . . A T . . . . T . . . G . AG . . . . . . .
blockSeqs : . . . . A . T . . . T T . . . . T . . . . . T . . . . . . .
blockSeqs : . . T . G . . . A . . . . . A . . . . . T . . . . . .
blockSeqs : . . . . . . . . A . . . . . T . . . . .
blockSeqs : . . . . . . .
blockSeqCons : A* *** G*** A** ** AGCA**** ** TA** GTGG** GT N** ** *** T** AG****** C*** AAC***** ** T* **** TA** A******* *** AC* ** *** *** *** ** N*****
originalCons : AGTCT-TAGCTCAAAAAGC-GCCG-AAGCGC---GGT-AG--G-CT-CGA-AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT----A---AT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTT-----TN-GA--C-GAG--CTTTTNTA--TGACATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAAATC-----AGAATA-TCTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCTTAAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTT-GGGTCA-T--ATG-TTACG-TAAT-------AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
finalCons : AGTCT-TAGCTCAAAAAGCA-CCG-AAGCGC---GGT-AGG---CT-CA--AA-ATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--ATAGCA----AT--AACTCTTTTA--CCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGTGGTTTT-----TN-GA--C-GAG--CTTTTNTN--TGACATC--GAG-AAAAA--GG-G-GCTGGTCC---TTTGAA-TAGGGGTCT--AGAAGGGCTAG----AA---GTCAAAATCAG------ATA-TCTT-TTAAACC---TAAAC-----ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATCT-AAC-A-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTTA--GGTCA-T--ATG-TTACG-TAATA-------AGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAAC-GACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGTN-----AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATGGACACATATAGCTAGAAAGTAGAAATAATTTGAAAAGCATTATA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 11 111 1111 222 11 11 11 1111 111 1 111111 111 111 111 33333333333333 1111 11111111 22222222222222 1 1111111 1111111 11 222222222 1111 111 11111 11 1111 11 111 1 111 111 11 44444444444 1 1 22222222222222222222222222222 22 111 11 1 11 11 11 1 1 1 222222 1 1 1111
lowQualScore : 0 6 11 8 444 8 7777 555 0 66 11 33 6 3 5 66 88 0 11 7777 1111 5 777 3 666 0 7 555555 22 1 77 5 999 77 1 1 5 888 5 77 5 5 5 4 000 77 1 999 5 1 9999 555 66666666666666 5 5 3 3333 99999999 33333333333333 66 888 0 7777777 999 3 9999 5 4444444 77777 5 5 2 00 333333333 9999 8888 3 444 3 6 55555 44 2 3 6 3 1 2 3 555 33 3 0000 6 555 3 77 3 888 7 7 22 3 3 7 55 5 5 5 77 000 0 000 000 5 5 33 3 8 77777777777 0 222 0 66666666666666666666666666666 6 0 3 55 55 777 2 999 3 3 66 3 2 33 0 33 3 88 33 0 0 0 8 3 5 6 111111 6 3 6 1 6 6 6 7 99 7 6 7 6 2 6 4444 3
lowQualScore : . . .. . ... . .... ... . .. .. .. . . . .. .. . .. .... .... . ... . ... . . ...... .. . .. . ... .. . . . ... . .. . . . . ... .. . ... . . .... ... .............. . . . .... ........ .............. .. ... . ....... ... . .... . ....... ..... . . . .. ......... .... .... . ... . . ..... .. . . . . . . . ... .. . .... . ... . .. . ... . . .. . . . .. . . . .. ... . ... ... . . .. . . ........... . ... . ............................. . . . .. .. ... . ... . . .. . . .. . .. . .. .. . . . . . . . ...... . . . . . . . . .. . . . . . . .... .
lowQualScore : 0 5 88 0 000 0 0000 000 8 99 99 22 5 1 0 99 22 9 99 6666 0000 4 333 9 444 7 1 777777 77 0 99 7 333 99 0 0 0 333 7 99 7 7 7 3 000 44 7 444 2 4 4444 666 66666666666666 0 0 2 1111 00000000 66666666666666 99 888 0 6666666 000 4 0000 0 2222222 88888 1 0 7 66 222222222 4444 6666 6 333 1 2 55555 22 2 1 2 1 0 3 3 888 88 3 3333 7 888 6 99 6 444 3 3 55 3 3 3 55 0 0 0 99 000 1 000 000 7 7 66 2 8 55555555555 0 888 0 55555555555555555555555555555 5 2 2 00 88 555 5 888 0 5 88 2 5 88 0 88 2 88 88 0 0 2 8 2 0 7 888888 7 3 7 3 7 7 7 3 22 3 7 3 7 5 7 2222 7
consensus : AGTCT-TAGCTCAAAAAGCA-CCG-AAGCGC---GGT-AG--G-CTC---AAAATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT-AGCGAT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGCGGTTTTTNGA--C-GAG--C--TTTTATNTGACATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAA------A--TCAG-ATAT-CTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATC-TAACA-A-CGTCTAAT-CTGTA-CA-----TTANCA----AATTTT--GGGTCA-T--ATG-TTACG-TAAT---AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
Reference ( family-2148 ) : AGTCT-TAGCTCAAAAAGCA-CCG-AAGCGC---GGT-AG--G-CTC---AAAATCGAG--TT--GAAAAAAGCGCCCGAT-TTTTTTTTGCGCT-TTT--AT-AGCAAT--AACTCTTT--TACCT---NAAATAT-A-TTGTG-AATAACATGTAGAA-CAAAAGTGG--TGTGGTTTTTNGA--C-GAG--C--TTTTNTNTGACATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-TAGGGGTC-T-AGAAGGGCTAG----AA---GTCAAA------A--TCAG-ATAT-CTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TCGATC-TAACA-A-CGTCTAAT-CTGTG-CA-----TTANCA----AATTTT--AGGTCA-T--ATG-TTACG-TAAT---AAGG--GATTTT-AGGGGCC-AGAA-CGGGTCNATCTT-T---G--A-C-T--C-G---TA-TA-TCTCG-AAAA-CGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCNNTTA-AGG------ACGGGA-CG--C---CGGCCCCTAAAAGTTCCTCTCTTTG-ATATCCTC---AAAACGGATCAAACGATATTTTCCGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGACCTTTCTTGTGA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAAGGGT---N--AAAGTCTTTTA-AACAT-ATCTTTTTACC-T-G-TCAATAAAT--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATTCCAATC
gi|1 : GTCTCTAACGTAAAAAGCAGCCGGAAGCGCCGGGGTTAG--GTCTC---AAAG-CGAG--TTTCGAAAAAAGCGCCCTA----TTTTTTGCACT-TTT--ATCAGCAATA-AACTCTTT--T-CCT---GAAA-AT-ATTTGTG-ATTAACATATA-AA-CAAAA-TAA--TA-GATTTTTAAA--C-GAG--CTTTTTTATTTGACATC--AAA-AAAAATTGA-G-G-CT-GTCCCTTTTTAAATTAGGGGTCTT-AGAGGGACTGA----AA---GTCAAA------AGCTCA--ATAT--TC-TTAAAA-CGGTA--ACTACAATTC--T--------GT-AATCCA---AG-CAT------AT-A-ATAATCT--AATG-TTAA----AACACACCATCTCAT-TTGTC-CA-----CC-CCATGATAGTTTT--TTGCTA-C--AT--TTACG-TAA--------------TT-A--GGCC-AGAA--AAGTAAACTTT-TCGGG--A-C-A--C-A---TA-TA-GCTAG-AAAAGTAAGAG-ATA-TAAT--G-TAAGAGC-ATCCTATATAACAAAAAGTTG-CTTCAA--AATATCCCTCTTC-CTCTAAACGAATATGG-C-AT-TTTTCAATTTTTGGAAATATACATATTAAAC-GACTCCAA-AGGTAGTATACGGGA-CGTCC---CGGCCTCTAAAA-TTACTC---CTGAATAACC-CAAAAAAACGTGT-AAGAAATCTTATCC-AACACTTGTTTAACAAAA-ATGCTCTTGA-AACT--TTCAGACCT---TTGTGCCTTATC-AAGGGAAAGGAGTTGGCCCTTTC--AATTAGGGGTCAAAAAGGATCCCA--AAAGTCTTTTA-AA-ATAATCTTATACCC-T-ACTC---AAAT--TGTTACAA--G-CAAAATGTAG---CTCT-----TGA----CAACTCGAAT
gi|10 : gattgaagttgtgcacctgggttttaagtGGTCA-T--ATG-CTACGGTAAT---AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-CAA--TTTT
gi|11 : GGTCA-T--ATG-CTACGGTAAT---AAGG--GATTTT--GTGGCC--GAA-CGGGTCTATCTT-T---G--A-C-CTCC-G---TA-TA-TCTCG-AAA--TGACAA-TCA-TTTTTGA-AAAG-GCCAT--TATTGAAC-AAAAGTTG-CTT-AA--AAT---CATGTTCTCTCTAA---AAT---G-C-A--ATTT
gi|12 : GTA-CA-----T-AACA----AATTTT--GGGTCA-T--ATG-TTATG-TAAG---GAGG--GATTTT-AGGGACC-AGAA-CGGGTCTATCTT-T---G--ACC-T--C-G---TA-TA-TCTCG-AAAA-TGACAA-ACA-TTTT--G-AAAA-GC-AT--T
gi|13 : -TTACG-TAAT---AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-GC-
gi|14 : gt-TTACG-TAAT---AAGG--GATTTT-AGGGGCCTAAAA-CCAGCAAAT-TT-T---GAAA-C-T--CGG---TA-TA-TCTCG--AAA-CGACAACACATTTTT--G-AAAA-G
gi|15 : gtCGAG--TTC-GAAAA--GCGCCCGAT-TTTTTT--GCACT-TTT--AT-AGCAAT--AACTCTTT--T
gi|16 : GAG--TT--CGAAAAAGCGCCCGAT-TTTTTT--GCACT-TTT--AT-AGCAAT--AACTCTTT--T
gi|2 : AGTCT-TAGCTCAAAAAGCA-TCG-AAGCGC---GGT-AG--G-CTC---AAAATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----GAT--AACTCCTT--TACTT---CAAATATAA-TTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTTTTGA--C-GA---C--TTTTATATG-CATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAA------A--TCAGAATAT-CTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAACA-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA--AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A----------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|3 : aAGTCT-TAGCTCAAAAAGCA-TCG-AAGCGC---GGT-AG--G-CTC---AAAATCGAG--TT--GAAAAAAGCATCCGATGTTTTTTTTATGTT-TTC--AT----GAT--AACTCCTT--TACTT---CAAATATAA-TTGTG-GATAAAATGTTGAATCAAAAGTGG--TGTGGTTTTTTGA--C-GA---C--TTTTATATG-CATC--GAG-AAAAA--GG-G-G-CTGGTCC---TTTGAA-AAGGGATC-T-AGA--GGCTAG----AA---GTAAAA------A--TCAGAATAT-CTT-TTAAAC-C--TA--A--AC-ATTT--T--------CT-A--TCA---AT-TAT------AG-A-ACAAGAA--AATG-TTGATCTTAACA-A-CGTCTAAT-CTGTA-CA-----TTAACA----AATTTTTCGGGTCA-TAAATG-TTACT-TAATA--AAGG--AATTTT-AGGGGCC-AGAA-CGGGTCCATCTT-T---G--A-C-T--T-G---TA-TA--CTCG-AAAA-TGACAA-ACA-TTTT--G-AAAG-GC-GT--TATTCAAC-AAAAGTTG-CTT-AA--AAT---CAT-TTCTCTCTGA---AAT---G-C-A--TTTTCATTTCTTCG-----------CTAAAT-GCCGGTTA-AGG------A----------------------AAAAGTTCCTCTCTTT--ATATCCTC---AAAACGGATCAAACGATATTTTCTGAATACTTGTAGAACAAAACAT--TTTTGA-AATG--ACAAGATC-TTCTTGTAA--TACC-AA-CAAAAGGGGCTGGCCCCTGCTAAATTAGGGGTCAGAAA-GGT---G--AAAGTCTTTTA-AACAT-ATCTTTTT-CC-T-G-TCAATAAAT--TGTTAT-AGTG-TAAGAAGC-GAA-CTGTCAATCT-A----CAATTCTAATC
gi|4 : TT--G-AAAA-GC-GT--TATTGAAC-AAAAGTTG-CCC-GA--AAT---CATGTTCTCTCTAA---AAT---A-C-AATTTTTCATT-CTT-G-----------CTAAATTGCCCCGTATAGG------ACAGAAACG--CGGTCGGCCCCTAAAAATTTCTCTCTTTG-ATATC-TC---AAAAACGATCAA------------GAAT----GTAGAACAAAACAG--TTTTGACAATGTGACA-GACCTTTCTTGTGA--TACCTAA-CAAAAAGGGGTGGCCCCT--TAA-TTAGGG-TCATAA-GGGT---TCAAAAGTCTTTTA-AACAT-ATCGTTTTACCGTGG-TCAATCAATTCTGTTGTAAGTGATAAGAAGCAGAGTCCGTCAAT-TGACGCCCAATT-CAAT
gi|4 : CTCTTTGATATCT---CAAAAACGA-TCAAG-AAT-----GTAGAA-CAAAACAGT--TTTGACAATGTGA--CAGAC--C--TTTCTTGTGATACC--TAACAAAAA--GG-G-G--TGGCCC---CTTAAT-TAGGG-TC---ATAAGGGTT-------------CAAA------A---------GT-CTT-TTAAAC-A--TA--T---C-GTTT--TACCGTGGTCA-A--TCA---AT-TCTGTTGTAAGTG-ATAAGAAGCAGAG-TCCGTC-AATTG-A-CGCCCAATTCAATA-TAATTAGTTATCA----AATT----AGGTCACT--CTG-TTCAG-TAATTATAAGGTGGATTTTTAGGGGCC-AAAATCGGGCAAATCTT-T---G--A-C-T--C-GACATA-TAATCTCTTAAAA-TGACAA-ACA-ATTTA-G-AAAA-GC-AT--TATTGACA-AAAAGTTGTCTT-GAGTAAT---CATAATCTTAACAA---GAT---GCC-A--TTTataattagttatcaaattaggtcactctgttcagtaattataaggtggatttttaggggccaaaatcgggcaaatctttgactcgacatataatctcttaaaatgacaaacaatttagaaaagcattattgacaaaaagttgtcttgagtaatcataatcttaacaagatgccattt
gi|5 : ttgaaaagcgttattgaacaaaagttgcccgaaatcatgttctctctaaaatacaatttttcattcttgctaaattgccccgtataggacagaaacgcggtcggcccctaaaaatttct-TAGCT-AAAAAGCG-CGA-AAGCGC---GGT-AG--GGCTCGACAATATCGATCTTT--GGAAAAAGCGTC-GAT-TTTTTAATAGTCT-TTTTCAT-ACGAAT--AA-TCTTT---ATCA---TGAATAT-A-T-GTG-A-TAACATGTAGAAACAAAAGTGG--TGTAGTTTTTGAA--C-GAC--C--TTTTACATGACATC--GAG-AAAAA--GG-G-GGCTGGTCC---TTTGA--TAAGGGCT-T-AGAGGGGCTAG----AA---GCAAAA------A--TCAG-ATATTCTTGTTAAAC-CA-TA--A--AC-ATTT--T--------TA-A--TCA---AT-TAT------AG-ATACAAGAA--AAT------------------GTTTGAT-CTAAA-CG-----T---------AATCTT--A-------------------TAA----AAGG--GATTTT-AGGG--C-AGAA-CGG-TCTATCTT-T---G--A-CCT--C-G---TAATA-TCTCG-AAAT-CGA-AA-ACT-TTTT--GCAAAG-G--GT--TATTGAAC-AAAAGTT--CTT-
gi|6 : gactgaagtattatacctattgagtctcaagctacAAAAAGC--CCG-GAGCGC---GGT-AGCGG-CTTCG-AAAATCGAG--AT--TCGAAAAGCGCCCGA---TTTTTTTGCACT-TTT--AT-AGC-AT--AACTCTTT--TACCTGTGAAAGTAT-C-TT-TGTAATAACATATAGAA--AAAAATAAT-TACGCTTTTTAGG--C-GAG--C--TTTTCTTTGACATCAAAAG-AAAAA--GGAG-G-CT-GTCC---TTTAAA-TTGGGGTC-TGAGAAGGGCTGGGAACAA---GTCAAA------A--TCGA-ATAT-CTT-TAAAACGG--TA--C--ACAATTTTGT--------CTAA--TCAAGTAT-TAT------AG---------T--AATGTTTAAAA-TAACA-T-TCTTTTGT-CT-TG-CC-----CTGATA----GTTTTT--TGTTCA-C--ATGATTAC--TAAT---TAGG--GAGTTT-AGGGGCC-AGGG-AGTGTCAATTGTAT---G--G-A-A--C-A---TA-TA-GCTAG-AAAA-GTAGAA-ATA-ATTT--G-AAAG-GC-AT--TATttccaaatttttaaccctggtacttttagtttcgtatcgcaatggacaagggaa
gi|7 : gttttaagtgctctagacgt--TC--GAAAAAAGCGCCCGAT-TTTTTTTTGCACTGTTT--AT-AGCAATCCAACTCTTT--T-CCT---GAAAAAT-A-TAGTA-ATCAACATATAGAA-CAAAA-TAAATTACGGTTTTTAGGGGC-GAGGCC--TTTTCTTTGACATC--AAG-AAAAA--AG-GAG-CTGGTCC---TTTAAA-TTAGGGTC-T-AGAAGGGCTGA----AA---G
gi|8 : gtAATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATC
gi|8 : AGGGCCAG----AAAGGGTCAAAGTTTTTA--TAAC-ATAT-CTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATC-TGACA-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT----AGG--GA--TT-AGGGGCC-AAAA-CAGtatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactc
gi|9 : aattATTAGGG-CCAGAAAGGGT---C--AAAGT-TTTTATAACAT-ATCTTTTTACC-T-G-TCAATAT-T--TGTTATAAGTG-TAAGAAGCAGAA-CTGTCAATCTGA----CAATCTCAATCcaaatcttgaaactc
gi|9 : AGGGCCAG----AAAGGGTCAAAGTTTTTA--TAAC-ATAT-CTT-TTTA-C-C--TGTCA--AT-ATTT--G--------TT-A--TAA---GTGTA-------AG-A-AGCAGAA--C-TG-TCAATC-TGACA-A-TCTC-AAT-CTATGTCA-----T-ATCA----AATTT---AGGTCA-T---TG-TTACG-TAAT----AGG--GA--TT-AGGGGCC-AAAA-CAG--CAAATCT-T---GAAA-C-T--C-G---tatgtcatatcaaatttaggtcattgttacgtaatagggattaggggccaaaacagcaaatcttgaaactcg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATGGACACATATAGCTAGAAAGTAGAAATAATTTGAAAAGCATTATA